##// END OF EJS Templates
A SpectraProc se agrega:...
Daniel Valdez -
r445:ff1e0d352ade
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1 '''
1 '''
2
2
3 $Author: murco $
3 $Author: murco $
4 $Id: JROData.py 173 2012-11-20 15:06:21Z murco $
4 $Id: JROData.py 173 2012-11-20 15:06:21Z murco $
5 '''
5 '''
6
6
7 import os, sys
7 import os, sys
8 import copy
8 import copy
9 import numpy
9 import numpy
10 import datetime
10 import datetime
11
11
12 from jroheaderIO import SystemHeader, RadarControllerHeader
12 from jroheaderIO import SystemHeader, RadarControllerHeader
13
13
14 def hildebrand_sekhon(data, navg):
14 def hildebrand_sekhon(data, navg):
15 """
15 """
16 This method is for the objective determination of de noise level in Doppler spectra. This
16 This method is for the objective determination of de noise level in Doppler spectra. This
17 implementation technique is based on the fact that the standard deviation of the spectral
17 implementation technique is based on the fact that the standard deviation of the spectral
18 densities is equal to the mean spectral density for white Gaussian noise
18 densities is equal to the mean spectral density for white Gaussian noise
19
19
20 Inputs:
20 Inputs:
21 Data : heights
21 Data : heights
22 navg : numbers of averages
22 navg : numbers of averages
23
23
24 Return:
24 Return:
25 -1 : any error
25 -1 : any error
26 anoise : noise's level
26 anoise : noise's level
27 """
27 """
28
28
29 dataflat = data.copy().reshape(-1)
29 dataflat = data.copy().reshape(-1)
30 dataflat.sort()
30 dataflat.sort()
31 npts = dataflat.size #numbers of points of the data
31 npts = dataflat.size #numbers of points of the data
32 npts_noise = 0.2*npts
32 npts_noise = 0.2*npts
33
33
34 if npts < 32:
34 if npts < 32:
35 print "error in noise - requires at least 32 points"
35 print "error in noise - requires at least 32 points"
36 return -1.0
36 return -1.0
37
37
38 dataflat2 = numpy.power(dataflat,2)
38 dataflat2 = numpy.power(dataflat,2)
39
39
40 cs = numpy.cumsum(dataflat)
40 cs = numpy.cumsum(dataflat)
41 cs2 = numpy.cumsum(dataflat2)
41 cs2 = numpy.cumsum(dataflat2)
42
42
43 # data sorted in ascending order
43 # data sorted in ascending order
44 nmin = int((npts + 7.)/8)
44 nmin = int((npts + 7.)/8)
45
45
46 for i in range(nmin, npts):
46 for i in range(nmin, npts):
47 s = cs[i]
47 s = cs[i]
48 s2 = cs2[i]
48 s2 = cs2[i]
49 p = s / float(i);
49 p = s / float(i);
50 p2 = p**2;
50 p2 = p**2;
51 q = s2 / float(i) - p2;
51 q = s2 / float(i) - p2;
52 leftc = p2;
52 leftc = p2;
53 rightc = q * float(navg);
53 rightc = q * float(navg);
54 R2 = leftc/rightc
54 R2 = leftc/rightc
55
55
56 # Signal detect: R2 < 1 (R2 = leftc/rightc)
56 # Signal detect: R2 < 1 (R2 = leftc/rightc)
57 if R2 < 1:
57 if R2 < 1:
58 npts_noise = i
58 npts_noise = i
59 break
59 break
60
60
61
61
62 anoise = numpy.average(dataflat[0:npts_noise])
62 anoise = numpy.average(dataflat[0:npts_noise])
63
63
64 return anoise;
64 return anoise;
65
65
66 def sorting_bruce(data, navg):
66 def sorting_bruce(data, navg):
67
67
68 data = data.copy()
68 data = data.copy()
69
69
70 sortdata = numpy.sort(data)
70 sortdata = numpy.sort(data)
71 lenOfData = len(data)
71 lenOfData = len(data)
72 nums_min = lenOfData/10
72 nums_min = lenOfData/10
73
73
74 if (lenOfData/10) > 0:
74 if (lenOfData/10) > 0:
75 nums_min = lenOfData/10
75 nums_min = lenOfData/10
76 else:
76 else:
77 nums_min = 0
77 nums_min = 0
78
78
79 rtest = 1.0 + 1.0/navg
79 rtest = 1.0 + 1.0/navg
80
80
81 sum = 0.
81 sump = 0.
82
82
83 sumq = 0.
83 sumq = 0.
84
84
85 j = 0
85 j = 0
86
86
87 cont = 1
87 cont = 1
88
88
89 while((cont==1)and(j<lenOfData)):
89 while((cont==1)and(j<lenOfData)):
90
90
91 sum += sortdata[j]
91 sump += sortdata[j]
92
92
93 sumq += sortdata[j]**2
93 sumq += sortdata[j]**2
94
94
95 j += 1
95 j += 1
96
96
97 if j > nums_min:
97 if j > nums_min:
98 if ((sumq*j) <= (rtest*sum**2)):
98 if ((sumq*j) <= (rtest*sump**2)):
99 lnoise = sum / j
99 lnoise = sump / j
100 else:
100 else:
101 j = j - 1
101 j = j - 1
102 sum = sum - sordata[j]
102 sump = sump - sortdata[j]
103 sumq = sumq - sordata[j]**2
103 sumq = sumq - sortdata[j]**2
104 cont = 0
104 cont = 0
105
105
106 if j == nums_min:
106 if j == nums_min:
107 lnoise = sum /j
107 lnoise = sump /j
108
108
109 return lnoise
109 return lnoise
110
110
111 class JROData:
111 class JROData:
112
112
113 # m_BasicHeader = BasicHeader()
113 # m_BasicHeader = BasicHeader()
114 # m_ProcessingHeader = ProcessingHeader()
114 # m_ProcessingHeader = ProcessingHeader()
115
115
116 systemHeaderObj = SystemHeader()
116 systemHeaderObj = SystemHeader()
117
117
118 radarControllerHeaderObj = RadarControllerHeader()
118 radarControllerHeaderObj = RadarControllerHeader()
119
119
120 # data = None
120 # data = None
121
121
122 type = None
122 type = None
123
123
124 dtype = None
124 dtype = None
125
125
126 # nChannels = None
126 # nChannels = None
127
127
128 # nHeights = None
128 # nHeights = None
129
129
130 nProfiles = None
130 nProfiles = None
131
131
132 heightList = None
132 heightList = None
133
133
134 channelList = None
134 channelList = None
135
135
136 flagNoData = True
136 flagNoData = True
137
137
138 flagTimeBlock = False
138 flagTimeBlock = False
139
139
140 useLocalTime = False
140 useLocalTime = False
141
141
142 utctime = None
142 utctime = None
143
143
144 timeZone = None
144 timeZone = None
145
145
146 dstFlag = None
146 dstFlag = None
147
147
148 errorCount = None
148 errorCount = None
149
149
150 blocksize = None
150 blocksize = None
151
151
152 nCode = None
152 nCode = None
153
153
154 nBaud = None
154 nBaud = None
155
155
156 code = None
156 code = None
157
157
158 flagDecodeData = False #asumo q la data no esta decodificada
158 flagDecodeData = False #asumo q la data no esta decodificada
159
159
160 flagDeflipData = False #asumo q la data no esta sin flip
160 flagDeflipData = False #asumo q la data no esta sin flip
161
161
162 flagShiftFFT = False
162 flagShiftFFT = False
163
163
164 ippSeconds = None
164 ippSeconds = None
165
165
166 timeInterval = None
166 timeInterval = None
167
167
168 nCohInt = None
168 nCohInt = None
169
169
170 noise = None
170 noise = None
171
171
172 windowOfFilter = 1
172 windowOfFilter = 1
173
173
174 #Speed of ligth
174 #Speed of ligth
175 C = 3e8
175 C = 3e8
176
176
177 frequency = 49.92e6
177 frequency = 49.92e6
178
178
179 realtime = False
179 realtime = False
180
180
181 def __init__(self):
181 def __init__(self):
182
182
183 raise ValueError, "This class has not been implemented"
183 raise ValueError, "This class has not been implemented"
184
184
185 def copy(self, inputObj=None):
185 def copy(self, inputObj=None):
186
186
187 if inputObj == None:
187 if inputObj == None:
188 return copy.deepcopy(self)
188 return copy.deepcopy(self)
189
189
190 for key in inputObj.__dict__.keys():
190 for key in inputObj.__dict__.keys():
191 self.__dict__[key] = inputObj.__dict__[key]
191 self.__dict__[key] = inputObj.__dict__[key]
192
192
193 def deepcopy(self):
193 def deepcopy(self):
194
194
195 return copy.deepcopy(self)
195 return copy.deepcopy(self)
196
196
197 def isEmpty(self):
197 def isEmpty(self):
198
198
199 return self.flagNoData
199 return self.flagNoData
200
200
201 def getNoise(self):
201 def getNoise(self):
202
202
203 raise ValueError, "Not implemented"
203 raise ValueError, "Not implemented"
204
204
205 def getNChannels(self):
205 def getNChannels(self):
206
206
207 return len(self.channelList)
207 return len(self.channelList)
208
208
209 def getChannelIndexList(self):
209 def getChannelIndexList(self):
210
210
211 return range(self.nChannels)
211 return range(self.nChannels)
212
212
213 def getNHeights(self):
213 def getNHeights(self):
214
214
215 return len(self.heightList)
215 return len(self.heightList)
216
216
217 def getHeiRange(self, extrapoints=0):
217 def getHeiRange(self, extrapoints=0):
218
218
219 heis = self.heightList
219 heis = self.heightList
220 # deltah = self.heightList[1] - self.heightList[0]
220 # deltah = self.heightList[1] - self.heightList[0]
221 #
221 #
222 # heis.append(self.heightList[-1])
222 # heis.append(self.heightList[-1])
223
223
224 return heis
224 return heis
225
225
226 def getltctime(self):
226 def getltctime(self):
227
227
228 if self.useLocalTime:
228 if self.useLocalTime:
229 return self.utctime - self.timeZone*60
229 return self.utctime - self.timeZone*60
230
230
231 return self.utctime
231 return self.utctime
232
232
233 def getDatatime(self):
233 def getDatatime(self):
234
234
235 datatime = datetime.datetime.utcfromtimestamp(self.ltctime)
235 datatime = datetime.datetime.utcfromtimestamp(self.ltctime)
236 return datatime
236 return datatime
237
237
238 def getTimeRange(self):
238 def getTimeRange(self):
239
239
240 datatime = []
240 datatime = []
241
241
242 datatime.append(self.ltctime)
242 datatime.append(self.ltctime)
243 datatime.append(self.ltctime + self.timeInterval)
243 datatime.append(self.ltctime + self.timeInterval)
244
244
245 datatime = numpy.array(datatime)
245 datatime = numpy.array(datatime)
246
246
247 return datatime
247 return datatime
248
248
249 def getFmax(self):
249 def getFmax(self):
250
250
251 PRF = 1./(self.ippSeconds * self.nCohInt)
251 PRF = 1./(self.ippSeconds * self.nCohInt)
252
252
253 fmax = PRF/2.
253 fmax = PRF/2.
254
254
255 return fmax
255 return fmax
256
256
257 def getVmax(self):
257 def getVmax(self):
258
258
259 _lambda = self.C/self.frequency
259 _lambda = self.C/self.frequency
260
260
261 vmax = self.getFmax() * _lambda
261 vmax = self.getFmax() * _lambda
262
262
263 return vmax
263 return vmax
264
264
265 nChannels = property(getNChannels, "I'm the 'nChannel' property.")
265 nChannels = property(getNChannels, "I'm the 'nChannel' property.")
266 channelIndexList = property(getChannelIndexList, "I'm the 'channelIndexList' property.")
266 channelIndexList = property(getChannelIndexList, "I'm the 'channelIndexList' property.")
267 nHeights = property(getNHeights, "I'm the 'nHeights' property.")
267 nHeights = property(getNHeights, "I'm the 'nHeights' property.")
268 noise = property(getNoise, "I'm the 'nHeights' property.")
268 noise = property(getNoise, "I'm the 'nHeights' property.")
269 datatime = property(getDatatime, "I'm the 'datatime' property")
269 datatime = property(getDatatime, "I'm the 'datatime' property")
270 ltctime = property(getltctime, "I'm the 'ltctime' property")
270 ltctime = property(getltctime, "I'm the 'ltctime' property")
271
271
272 class Voltage(JROData):
272 class Voltage(JROData):
273
273
274 #data es un numpy array de 2 dmensiones (canales, alturas)
274 #data es un numpy array de 2 dmensiones (canales, alturas)
275 data = None
275 data = None
276
276
277 def __init__(self):
277 def __init__(self):
278 '''
278 '''
279 Constructor
279 Constructor
280 '''
280 '''
281
281
282 self.radarControllerHeaderObj = RadarControllerHeader()
282 self.radarControllerHeaderObj = RadarControllerHeader()
283
283
284 self.systemHeaderObj = SystemHeader()
284 self.systemHeaderObj = SystemHeader()
285
285
286 self.type = "Voltage"
286 self.type = "Voltage"
287
287
288 self.data = None
288 self.data = None
289
289
290 self.dtype = None
290 self.dtype = None
291
291
292 # self.nChannels = 0
292 # self.nChannels = 0
293
293
294 # self.nHeights = 0
294 # self.nHeights = 0
295
295
296 self.nProfiles = None
296 self.nProfiles = None
297
297
298 self.heightList = None
298 self.heightList = None
299
299
300 self.channelList = None
300 self.channelList = None
301
301
302 # self.channelIndexList = None
302 # self.channelIndexList = None
303
303
304 self.flagNoData = True
304 self.flagNoData = True
305
305
306 self.flagTimeBlock = False
306 self.flagTimeBlock = False
307
307
308 self.utctime = None
308 self.utctime = None
309
309
310 self.timeZone = None
310 self.timeZone = None
311
311
312 self.dstFlag = None
312 self.dstFlag = None
313
313
314 self.errorCount = None
314 self.errorCount = None
315
315
316 self.nCohInt = None
316 self.nCohInt = None
317
317
318 self.blocksize = None
318 self.blocksize = None
319
319
320 self.flagDecodeData = False #asumo q la data no esta decodificada
320 self.flagDecodeData = False #asumo q la data no esta decodificada
321
321
322 self.flagDeflipData = False #asumo q la data no esta sin flip
322 self.flagDeflipData = False #asumo q la data no esta sin flip
323
323
324 self.flagShiftFFT = False
324 self.flagShiftFFT = False
325
325
326
326
327 def getNoisebyHildebrand(self):
327 def getNoisebyHildebrand(self):
328 """
328 """
329 Determino el nivel de ruido usando el metodo Hildebrand-Sekhon
329 Determino el nivel de ruido usando el metodo Hildebrand-Sekhon
330
330
331 Return:
331 Return:
332 noiselevel
332 noiselevel
333 """
333 """
334
334
335 for channel in range(self.nChannels):
335 for channel in range(self.nChannels):
336 daux = self.data_spc[channel,:,:]
336 daux = self.data_spc[channel,:,:]
337 self.noise[channel] = hildebrand_sekhon(daux, self.nCohInt)
337 self.noise[channel] = hildebrand_sekhon(daux, self.nCohInt)
338
338
339 return self.noise
339 return self.noise
340
340
341 def getNoise(self, type = 1):
341 def getNoise(self, type = 1):
342
342
343 self.noise = numpy.zeros(self.nChannels)
343 self.noise = numpy.zeros(self.nChannels)
344
344
345 if type == 1:
345 if type == 1:
346 noise = self.getNoisebyHildebrand()
346 noise = self.getNoisebyHildebrand()
347
347
348 return 10*numpy.log10(noise)
348 return 10*numpy.log10(noise)
349
349
350 class Spectra(JROData):
350 class Spectra(JROData):
351
351
352 #data es un numpy array de 2 dmensiones (canales, perfiles, alturas)
352 #data es un numpy array de 2 dmensiones (canales, perfiles, alturas)
353 data_spc = None
353 data_spc = None
354
354
355 #data es un numpy array de 2 dmensiones (canales, pares, alturas)
355 #data es un numpy array de 2 dmensiones (canales, pares, alturas)
356 data_cspc = None
356 data_cspc = None
357
357
358 #data es un numpy array de 2 dmensiones (canales, alturas)
358 #data es un numpy array de 2 dmensiones (canales, alturas)
359 data_dc = None
359 data_dc = None
360
360
361 nFFTPoints = None
361 nFFTPoints = None
362
362
363 nPairs = None
363 nPairs = None
364
364
365 pairsList = None
365 pairsList = None
366
366
367 nIncohInt = None
367 nIncohInt = None
368
368
369 wavelength = None #Necesario para cacular el rango de velocidad desde la frecuencia
369 wavelength = None #Necesario para cacular el rango de velocidad desde la frecuencia
370
370
371 nCohInt = None #se requiere para determinar el valor de timeInterval
371 nCohInt = None #se requiere para determinar el valor de timeInterval
372
372
373 ippFactor = None
374
373 def __init__(self):
375 def __init__(self):
374 '''
376 '''
375 Constructor
377 Constructor
376 '''
378 '''
377
379
378 self.radarControllerHeaderObj = RadarControllerHeader()
380 self.radarControllerHeaderObj = RadarControllerHeader()
379
381
380 self.systemHeaderObj = SystemHeader()
382 self.systemHeaderObj = SystemHeader()
381
383
382 self.type = "Spectra"
384 self.type = "Spectra"
383
385
384 # self.data = None
386 # self.data = None
385
387
386 self.dtype = None
388 self.dtype = None
387
389
388 # self.nChannels = 0
390 # self.nChannels = 0
389
391
390 # self.nHeights = 0
392 # self.nHeights = 0
391
393
392 self.nProfiles = None
394 self.nProfiles = None
393
395
394 self.heightList = None
396 self.heightList = None
395
397
396 self.channelList = None
398 self.channelList = None
397
399
398 # self.channelIndexList = None
400 # self.channelIndexList = None
399
401
400 self.flagNoData = True
402 self.flagNoData = True
401
403
402 self.flagTimeBlock = False
404 self.flagTimeBlock = False
403
405
404 self.utctime = None
406 self.utctime = None
405
407
406 self.nCohInt = None
408 self.nCohInt = None
407
409
408 self.nIncohInt = None
410 self.nIncohInt = None
409
411
410 self.blocksize = None
412 self.blocksize = None
411
413
412 self.nFFTPoints = None
414 self.nFFTPoints = None
413
415
414 self.wavelength = None
416 self.wavelength = None
415
417
416 self.flagDecodeData = False #asumo q la data no esta decodificada
418 self.flagDecodeData = False #asumo q la data no esta decodificada
417
419
418 self.flagDeflipData = False #asumo q la data no esta sin flip
420 self.flagDeflipData = False #asumo q la data no esta sin flip
419
421
420 self.flagShiftFFT = False
422 self.flagShiftFFT = False
421
423
422 def getNoisebyHildebrand(self):
424 def getNoisebyHildebrand(self):
423 """
425 """
424 Determino el nivel de ruido usando el metodo Hildebrand-Sekhon
426 Determino el nivel de ruido usando el metodo Hildebrand-Sekhon
425
427
426 Return:
428 Return:
427 noiselevel
429 noiselevel
428 """
430 """
429
431
430 for channel in range(self.nChannels):
432 for channel in range(self.nChannels):
431 daux = self.data_spc[channel,:,:]
433 daux = self.data_spc[channel,:,:]
432 self.noise[channel] = hildebrand_sekhon(daux, self.nIncohInt)
434 self.noise[channel] = hildebrand_sekhon(daux, self.nIncohInt)
433
435
434 return self.noise
436 return self.noise
435
437
436 def getNoisebyWindow(self, heiIndexMin=0, heiIndexMax=-1, freqIndexMin=0, freqIndexMax=-1):
438 def getNoisebyWindow(self, heiIndexMin=0, heiIndexMax=-1, freqIndexMin=0, freqIndexMax=-1):
437 """
439 """
438 Determina el ruido del canal utilizando la ventana indicada con las coordenadas:
440 Determina el ruido del canal utilizando la ventana indicada con las coordenadas:
439 (heiIndexMIn, freqIndexMin) hasta (heiIndexMax, freqIndexMAx)
441 (heiIndexMIn, freqIndexMin) hasta (heiIndexMax, freqIndexMAx)
440
442
441 Inputs:
443 Inputs:
442 heiIndexMin: Limite inferior del eje de alturas
444 heiIndexMin: Limite inferior del eje de alturas
443 heiIndexMax: Limite superior del eje de alturas
445 heiIndexMax: Limite superior del eje de alturas
444 freqIndexMin: Limite inferior del eje de frecuencia
446 freqIndexMin: Limite inferior del eje de frecuencia
445 freqIndexMax: Limite supoerior del eje de frecuencia
447 freqIndexMax: Limite supoerior del eje de frecuencia
446 """
448 """
447
449
448 data = self.data_spc[:, heiIndexMin:heiIndexMax, freqIndexMin:freqIndexMax]
450 data = self.data_spc[:, heiIndexMin:heiIndexMax, freqIndexMin:freqIndexMax]
449
451
450 for channel in range(self.nChannels):
452 for channel in range(self.nChannels):
451 daux = data[channel,:,:]
453 daux = data[channel,:,:]
452 self.noise[channel] = numpy.average(daux)
454 self.noise[channel] = numpy.average(daux)
453
455
454 return self.noise
456 return self.noise
455
457
456 def getNoisebySort(self):
458 def getNoisebySort(self):
457
459
458 for channel in range(self.nChannels):
460 for channel in range(self.nChannels):
459 daux = self.data_spc[channel,:,:]
461 daux = self.data_spc[channel,:,:]
460 self.noise[channel] = sorting_bruce(daux, self.nIncohInt)
462 self.noise[channel] = sorting_bruce(daux, self.nIncohInt)
461
463
462 return self.noise
464 return self.noise
463
465
464 def getNoise(self, type = 1):
466 def getNoise(self, type = 1):
465
467
466 self.noise = numpy.zeros(self.nChannels)
468 self.noise = numpy.zeros(self.nChannels)
467
469
468 if type == 1:
470 if type == 1:
469 noise = self.getNoisebyHildebrand()
471 noise = self.getNoisebyHildebrand()
470
472
471 if type == 2:
473 if type == 2:
472 noise = self.getNoisebySort()
474 noise = self.getNoisebySort()
473
475
474 if type == 3:
476 if type == 3:
475 noise = self.getNoisebyWindow()
477 noise = self.getNoisebyWindow()
476
478
477 return noise
479 return noise
478
480
479
481
480 def getFreqRange(self, extrapoints=0):
482 def getFreqRange(self, extrapoints=0):
481
483
482 deltafreq = self.getFmax() / self.nFFTPoints
484 deltafreq = self.getFmax() / (self.nFFTPoints*self.ippFactor)
483 freqrange = deltafreq*(numpy.arange(self.nFFTPoints+extrapoints)-self.nFFTPoints/2.) - deltafreq/2
485 freqrange = deltafreq*(numpy.arange(self.nFFTPoints+extrapoints)-self.nFFTPoints/2.) - deltafreq/2
484
486
485 return freqrange
487 return freqrange
486
488
487 def getVelRange(self, extrapoints=0):
489 def getVelRange(self, extrapoints=0):
488
490
489 deltav = self.getVmax() / self.nFFTPoints
491 deltav = self.getVmax() / (self.nFFTPoints*self.ippFactor)
490 velrange = deltav*(numpy.arange(self.nFFTPoints+extrapoints)-self.nFFTPoints/2.) - deltav/2
492 velrange = deltav*(numpy.arange(self.nFFTPoints+extrapoints)-self.nFFTPoints/2.) - deltav/2
491
493
492 return velrange
494 return velrange
493
495
494 def getNPairs(self):
496 def getNPairs(self):
495
497
496 return len(self.pairsList)
498 return len(self.pairsList)
497
499
498 def getPairsIndexList(self):
500 def getPairsIndexList(self):
499
501
500 return range(self.nPairs)
502 return range(self.nPairs)
501
503
502 def getNormFactor(self):
504 def getNormFactor(self):
503 pwcode = 1
505 pwcode = 1
504 if self.flagDecodeData:
506 if self.flagDecodeData:
505 pwcode = numpy.sum(self.code[0]**2)
507 pwcode = numpy.sum(self.code[0]**2)
506 normFactor = min(self.nFFTPoints,self.nProfiles)*self.nIncohInt*self.nCohInt*pwcode
508 normFactor = min(self.nFFTPoints,self.nProfiles)*self.nIncohInt*self.nCohInt*pwcode
507
509
508 return normFactor
510 return normFactor
509
511
510 def getFlagCspc(self):
512 def getFlagCspc(self):
511
513
512 if self.data_cspc == None:
514 if self.data_cspc == None:
513 return True
515 return True
514
516
515 return False
517 return False
516
518
517 def getFlagDc(self):
519 def getFlagDc(self):
518
520
519 if self.data_dc == None:
521 if self.data_dc == None:
520 return True
522 return True
521
523
522 return False
524 return False
523
525
524 nPairs = property(getNPairs, "I'm the 'nPairs' property.")
526 nPairs = property(getNPairs, "I'm the 'nPairs' property.")
525 pairsIndexList = property(getPairsIndexList, "I'm the 'pairsIndexList' property.")
527 pairsIndexList = property(getPairsIndexList, "I'm the 'pairsIndexList' property.")
526 normFactor = property(getNormFactor, "I'm the 'getNormFactor' property.")
528 normFactor = property(getNormFactor, "I'm the 'getNormFactor' property.")
527 flag_cspc = property(getFlagCspc)
529 flag_cspc = property(getFlagCspc)
528 flag_dc = property(getFlagDc)
530 flag_dc = property(getFlagDc)
529
531
530 class SpectraHeis(JROData):
532 class SpectraHeis(JROData):
531
533
532 data_spc = None
534 data_spc = None
533
535
534 data_cspc = None
536 data_cspc = None
535
537
536 data_dc = None
538 data_dc = None
537
539
538 nFFTPoints = None
540 nFFTPoints = None
539
541
540 nPairs = None
542 nPairs = None
541
543
542 pairsList = None
544 pairsList = None
543
545
544 nIncohInt = None
546 nIncohInt = None
545
547
546 def __init__(self):
548 def __init__(self):
547
549
548 self.radarControllerHeaderObj = RadarControllerHeader()
550 self.radarControllerHeaderObj = RadarControllerHeader()
549
551
550 self.systemHeaderObj = SystemHeader()
552 self.systemHeaderObj = SystemHeader()
551
553
552 self.type = "SpectraHeis"
554 self.type = "SpectraHeis"
553
555
554 self.dtype = None
556 self.dtype = None
555
557
556 # self.nChannels = 0
558 # self.nChannels = 0
557
559
558 # self.nHeights = 0
560 # self.nHeights = 0
559
561
560 self.nProfiles = None
562 self.nProfiles = None
561
563
562 self.heightList = None
564 self.heightList = None
563
565
564 self.channelList = None
566 self.channelList = None
565
567
566 # self.channelIndexList = None
568 # self.channelIndexList = None
567
569
568 self.flagNoData = True
570 self.flagNoData = True
569
571
570 self.flagTimeBlock = False
572 self.flagTimeBlock = False
571
573
572 self.nPairs = 0
574 self.nPairs = 0
573
575
574 self.utctime = None
576 self.utctime = None
575
577
576 self.blocksize = None
578 self.blocksize = None
577
579
578 class Fits:
580 class Fits:
579
581
580 heightList = None
582 heightList = None
581
583
582 channelList = None
584 channelList = None
583
585
584 flagNoData = True
586 flagNoData = True
585
587
586 flagTimeBlock = False
588 flagTimeBlock = False
587
589
588 useLocalTime = False
590 useLocalTime = False
589
591
590 utctime = None
592 utctime = None
591
593
592 timeZone = None
594 timeZone = None
593
595
594 ippSeconds = None
596 ippSeconds = None
595
597
596 timeInterval = None
598 timeInterval = None
597
599
598 nCohInt = None
600 nCohInt = None
599
601
600 nIncohInt = None
602 nIncohInt = None
601
603
602 noise = None
604 noise = None
603
605
604 windowOfFilter = 1
606 windowOfFilter = 1
605
607
606 #Speed of ligth
608 #Speed of ligth
607 C = 3e8
609 C = 3e8
608
610
609 frequency = 49.92e6
611 frequency = 49.92e6
610
612
611 realtime = False
613 realtime = False
612
614
613
615
614 def __init__(self):
616 def __init__(self):
615
617
616 self.type = "Fits"
618 self.type = "Fits"
617
619
618 self.nProfiles = None
620 self.nProfiles = None
619
621
620 self.heightList = None
622 self.heightList = None
621
623
622 self.channelList = None
624 self.channelList = None
623
625
624 # self.channelIndexList = None
626 # self.channelIndexList = None
625
627
626 self.flagNoData = True
628 self.flagNoData = True
627
629
628 self.utctime = None
630 self.utctime = None
629
631
630 self.nCohInt = None
632 self.nCohInt = None
631
633
632 self.nIncohInt = None
634 self.nIncohInt = None
633
635
634 self.useLocalTime = True
636 self.useLocalTime = True
635
637
636 # self.utctime = None
638 # self.utctime = None
637 # self.timeZone = None
639 # self.timeZone = None
638 # self.ltctime = None
640 # self.ltctime = None
639 # self.timeInterval = None
641 # self.timeInterval = None
640 # self.header = None
642 # self.header = None
641 # self.data_header = None
643 # self.data_header = None
642 # self.data = None
644 # self.data = None
643 # self.datatime = None
645 # self.datatime = None
644 # self.flagNoData = False
646 # self.flagNoData = False
645 # self.expName = ''
647 # self.expName = ''
646 # self.nChannels = None
648 # self.nChannels = None
647 # self.nSamples = None
649 # self.nSamples = None
648 # self.dataBlocksPerFile = None
650 # self.dataBlocksPerFile = None
649 # self.comments = ''
651 # self.comments = ''
650 #
652 #
651
653
652
654
653 def getltctime(self):
655 def getltctime(self):
654
656
655 if self.useLocalTime:
657 if self.useLocalTime:
656 return self.utctime - self.timeZone*60
658 return self.utctime - self.timeZone*60
657
659
658 return self.utctime
660 return self.utctime
659
661
660 def getDatatime(self):
662 def getDatatime(self):
661
663
662 datatime = datetime.datetime.utcfromtimestamp(self.ltctime)
664 datatime = datetime.datetime.utcfromtimestamp(self.ltctime)
663 return datatime
665 return datatime
664
666
665 def getTimeRange(self):
667 def getTimeRange(self):
666
668
667 datatime = []
669 datatime = []
668
670
669 datatime.append(self.ltctime)
671 datatime.append(self.ltctime)
670 datatime.append(self.ltctime + self.timeInterval)
672 datatime.append(self.ltctime + self.timeInterval)
671
673
672 datatime = numpy.array(datatime)
674 datatime = numpy.array(datatime)
673
675
674 return datatime
676 return datatime
675
677
676 def getHeiRange(self):
678 def getHeiRange(self):
677
679
678 heis = self.heightList
680 heis = self.heightList
679
681
680 return heis
682 return heis
681
683
682 def isEmpty(self):
684 def isEmpty(self):
683
685
684 return self.flagNoData
686 return self.flagNoData
685
687
686 def getNHeights(self):
688 def getNHeights(self):
687
689
688 return len(self.heightList)
690 return len(self.heightList)
689
691
690 def getNChannels(self):
692 def getNChannels(self):
691
693
692 return len(self.channelList)
694 return len(self.channelList)
693
695
694 def getChannelIndexList(self):
696 def getChannelIndexList(self):
695
697
696 return range(self.nChannels)
698 return range(self.nChannels)
697
699
698 def getNoise(self, type = 1):
700 def getNoise(self, type = 1):
699
701
700 self.noise = numpy.zeros(self.nChannels)
702 self.noise = numpy.zeros(self.nChannels)
701
703
702 if type == 1:
704 if type == 1:
703 noise = self.getNoisebyHildebrand()
705 noise = self.getNoisebyHildebrand()
704
706
705 if type == 2:
707 if type == 2:
706 noise = self.getNoisebySort()
708 noise = self.getNoisebySort()
707
709
708 if type == 3:
710 if type == 3:
709 noise = self.getNoisebyWindow()
711 noise = self.getNoisebyWindow()
710
712
711 return noise
713 return noise
712
714
713 datatime = property(getDatatime, "I'm the 'datatime' property")
715 datatime = property(getDatatime, "I'm the 'datatime' property")
714 nHeights = property(getNHeights, "I'm the 'nHeights' property.")
716 nHeights = property(getNHeights, "I'm the 'nHeights' property.")
715 nChannels = property(getNChannels, "I'm the 'nChannel' property.")
717 nChannels = property(getNChannels, "I'm the 'nChannel' property.")
716 channelIndexList = property(getChannelIndexList, "I'm the 'channelIndexList' property.")
718 channelIndexList = property(getChannelIndexList, "I'm the 'channelIndexList' property.")
717 noise = property(getNoise, "I'm the 'nHeights' property.")
719 noise = property(getNoise, "I'm the 'nHeights' property.")
718 datatime = property(getDatatime, "I'm the 'datatime' property")
720 datatime = property(getDatatime, "I'm the 'datatime' property")
719 ltctime = property(getltctime, "I'm the 'ltctime' property")
721 ltctime = property(getltctime, "I'm the 'ltctime' property")
720
722
721 ltctime = property(getltctime, "I'm the 'ltctime' property") No newline at end of file
723 ltctime = property(getltctime, "I'm the 'ltctime' property")
@@ -1,3452 +1,3389
1 '''
1 '''
2
2
3 $Author: murco $
3 $Author: murco $
4 $Id: JRODataIO.py 169 2012-11-19 21:57:03Z murco $
4 $Id: JRODataIO.py 169 2012-11-19 21:57:03Z murco $
5 '''
5 '''
6
6
7 import os, sys
7 import os, sys
8 import glob
8 import glob
9 import time
9 import time
10 import numpy
10 import numpy
11 import fnmatch
11 import fnmatch
12 import time, datetime
12 import time, datetime
13 from xml.etree.ElementTree import Element, SubElement, ElementTree
13 from xml.etree.ElementTree import Element, SubElement, ElementTree
14 try:
14 try:
15 import pyfits
15 import pyfits
16 except:
16 except:
17 print "pyfits module has not been imported, it should be installed to save files in fits format"
17 print "pyfits module has not been imported, it should be installed to save files in fits format"
18
18
19 from jrodata import *
19 from jrodata import *
20 from jroheaderIO import *
20 from jroheaderIO import *
21 from jroprocessing import *
21 from jroprocessing import *
22
22
23 LOCALTIME = True #-18000
23 LOCALTIME = True #-18000
24
24
25 def isNumber(str):
25 def isNumber(str):
26 """
26 """
27 Chequea si el conjunto de caracteres que componen un string puede ser convertidos a un numero.
27 Chequea si el conjunto de caracteres que componen un string puede ser convertidos a un numero.
28
28
29 Excepciones:
29 Excepciones:
30 Si un determinado string no puede ser convertido a numero
30 Si un determinado string no puede ser convertido a numero
31 Input:
31 Input:
32 str, string al cual se le analiza para determinar si convertible a un numero o no
32 str, string al cual se le analiza para determinar si convertible a un numero o no
33
33
34 Return:
34 Return:
35 True : si el string es uno numerico
35 True : si el string es uno numerico
36 False : no es un string numerico
36 False : no es un string numerico
37 """
37 """
38 try:
38 try:
39 float( str )
39 float( str )
40 return True
40 return True
41 except:
41 except:
42 return False
42 return False
43
43
44 def isThisFileinRange(filename, startUTSeconds, endUTSeconds):
44 def isThisFileinRange(filename, startUTSeconds, endUTSeconds):
45 """
45 """
46 Esta funcion determina si un archivo de datos se encuentra o no dentro del rango de fecha especificado.
46 Esta funcion determina si un archivo de datos se encuentra o no dentro del rango de fecha especificado.
47
47
48 Inputs:
48 Inputs:
49 filename : nombre completo del archivo de datos en formato Jicamarca (.r)
49 filename : nombre completo del archivo de datos en formato Jicamarca (.r)
50
50
51 startUTSeconds : fecha inicial del rango seleccionado. La fecha esta dada en
51 startUTSeconds : fecha inicial del rango seleccionado. La fecha esta dada en
52 segundos contados desde 01/01/1970.
52 segundos contados desde 01/01/1970.
53 endUTSeconds : fecha final del rango seleccionado. La fecha esta dada en
53 endUTSeconds : fecha final del rango seleccionado. La fecha esta dada en
54 segundos contados desde 01/01/1970.
54 segundos contados desde 01/01/1970.
55
55
56 Return:
56 Return:
57 Boolean : Retorna True si el archivo de datos contiene datos en el rango de
57 Boolean : Retorna True si el archivo de datos contiene datos en el rango de
58 fecha especificado, de lo contrario retorna False.
58 fecha especificado, de lo contrario retorna False.
59
59
60 Excepciones:
60 Excepciones:
61 Si el archivo no existe o no puede ser abierto
61 Si el archivo no existe o no puede ser abierto
62 Si la cabecera no puede ser leida.
62 Si la cabecera no puede ser leida.
63
63
64 """
64 """
65 basicHeaderObj = BasicHeader(LOCALTIME)
65 basicHeaderObj = BasicHeader(LOCALTIME)
66
66
67 try:
67 try:
68 fp = open(filename,'rb')
68 fp = open(filename,'rb')
69 except:
69 except:
70 raise IOError, "The file %s can't be opened" %(filename)
70 raise IOError, "The file %s can't be opened" %(filename)
71
71
72 sts = basicHeaderObj.read(fp)
72 sts = basicHeaderObj.read(fp)
73 fp.close()
73 fp.close()
74
74
75 if not(sts):
75 if not(sts):
76 print "Skipping the file %s because it has not a valid header" %(filename)
76 print "Skipping the file %s because it has not a valid header" %(filename)
77 return 0
77 return 0
78
78
79 if not ((startUTSeconds <= basicHeaderObj.utc) and (endUTSeconds > basicHeaderObj.utc)):
79 if not ((startUTSeconds <= basicHeaderObj.utc) and (endUTSeconds > basicHeaderObj.utc)):
80 return 0
80 return 0
81
81
82 return 1
82 return 1
83
83
84 def isFileinThisTime(filename, startTime, endTime):
84 def isFileinThisTime(filename, startTime, endTime):
85 """
85 """
86 Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado.
86 Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado.
87
87
88 Inputs:
88 Inputs:
89 filename : nombre completo del archivo de datos en formato Jicamarca (.r)
89 filename : nombre completo del archivo de datos en formato Jicamarca (.r)
90
90
91 startTime : tiempo inicial del rango seleccionado en formato datetime.time
91 startTime : tiempo inicial del rango seleccionado en formato datetime.time
92
92
93 endTime : tiempo final del rango seleccionado en formato datetime.time
93 endTime : tiempo final del rango seleccionado en formato datetime.time
94
94
95 Return:
95 Return:
96 Boolean : Retorna True si el archivo de datos contiene datos en el rango de
96 Boolean : Retorna True si el archivo de datos contiene datos en el rango de
97 fecha especificado, de lo contrario retorna False.
97 fecha especificado, de lo contrario retorna False.
98
98
99 Excepciones:
99 Excepciones:
100 Si el archivo no existe o no puede ser abierto
100 Si el archivo no existe o no puede ser abierto
101 Si la cabecera no puede ser leida.
101 Si la cabecera no puede ser leida.
102
102
103 """
103 """
104
104
105
105
106 try:
106 try:
107 fp = open(filename,'rb')
107 fp = open(filename,'rb')
108 except:
108 except:
109 raise IOError, "The file %s can't be opened" %(filename)
109 raise IOError, "The file %s can't be opened" %(filename)
110
110
111 basicHeaderObj = BasicHeader(LOCALTIME)
111 basicHeaderObj = BasicHeader(LOCALTIME)
112 sts = basicHeaderObj.read(fp)
112 sts = basicHeaderObj.read(fp)
113 fp.close()
113 fp.close()
114
114
115 thisDatetime = basicHeaderObj.datatime
115 thisDatetime = basicHeaderObj.datatime
116 thisTime = basicHeaderObj.datatime.time()
116 thisTime = basicHeaderObj.datatime.time()
117
117
118 if not(sts):
118 if not(sts):
119 print "Skipping the file %s because it has not a valid header" %(filename)
119 print "Skipping the file %s because it has not a valid header" %(filename)
120 return None
120 return None
121
121
122 if not ((startTime <= thisTime) and (endTime > thisTime)):
122 if not ((startTime <= thisTime) and (endTime > thisTime)):
123 return None
123 return None
124
124
125 return thisDatetime
125 return thisDatetime
126
126
127 def getFileFromSet(path,ext,set):
127 def getFileFromSet(path,ext,set):
128 validFilelist = []
128 validFilelist = []
129 fileList = os.listdir(path)
129 fileList = os.listdir(path)
130
130
131 # 0 1234 567 89A BCDE
131 # 0 1234 567 89A BCDE
132 # H YYYY DDD SSS .ext
132 # H YYYY DDD SSS .ext
133
133
134 for file in fileList:
134 for file in fileList:
135 try:
135 try:
136 year = int(file[1:5])
136 year = int(file[1:5])
137 doy = int(file[5:8])
137 doy = int(file[5:8])
138
138
139
139
140 except:
140 except:
141 continue
141 continue
142
142
143 if (os.path.splitext(file)[-1].lower() != ext.lower()):
143 if (os.path.splitext(file)[-1].lower() != ext.lower()):
144 continue
144 continue
145
145
146 validFilelist.append(file)
146 validFilelist.append(file)
147
147
148 myfile = fnmatch.filter(validFilelist,'*%4.4d%3.3d%3.3d*'%(year,doy,set))
148 myfile = fnmatch.filter(validFilelist,'*%4.4d%3.3d%3.3d*'%(year,doy,set))
149
149
150 if len(myfile)!= 0:
150 if len(myfile)!= 0:
151 return myfile[0]
151 return myfile[0]
152 else:
152 else:
153 filename = '*%4.4d%3.3d%3.3d%s'%(year,doy,set,ext.lower())
153 filename = '*%4.4d%3.3d%3.3d%s'%(year,doy,set,ext.lower())
154 print 'the filename %s does not exist'%filename
154 print 'the filename %s does not exist'%filename
155 print '...going to the last file: '
155 print '...going to the last file: '
156
156
157 if validFilelist:
157 if validFilelist:
158 validFilelist = sorted( validFilelist, key=str.lower )
158 validFilelist = sorted( validFilelist, key=str.lower )
159 return validFilelist[-1]
159 return validFilelist[-1]
160
160
161 return None
161 return None
162
162
163
163
164 def getlastFileFromPath(path, ext):
164 def getlastFileFromPath(path, ext):
165 """
165 """
166 Depura el fileList dejando solo los que cumplan el formato de "PYYYYDDDSSS.ext"
166 Depura el fileList dejando solo los que cumplan el formato de "PYYYYDDDSSS.ext"
167 al final de la depuracion devuelve el ultimo file de la lista que quedo.
167 al final de la depuracion devuelve el ultimo file de la lista que quedo.
168
168
169 Input:
169 Input:
170 fileList : lista conteniendo todos los files (sin path) que componen una determinada carpeta
170 fileList : lista conteniendo todos los files (sin path) que componen una determinada carpeta
171 ext : extension de los files contenidos en una carpeta
171 ext : extension de los files contenidos en una carpeta
172
172
173 Return:
173 Return:
174 El ultimo file de una determinada carpeta, no se considera el path.
174 El ultimo file de una determinada carpeta, no se considera el path.
175 """
175 """
176 validFilelist = []
176 validFilelist = []
177 fileList = os.listdir(path)
177 fileList = os.listdir(path)
178
178
179 # 0 1234 567 89A BCDE
179 # 0 1234 567 89A BCDE
180 # H YYYY DDD SSS .ext
180 # H YYYY DDD SSS .ext
181
181
182 for file in fileList:
182 for file in fileList:
183 try:
183 try:
184 year = int(file[1:5])
184 year = int(file[1:5])
185 doy = int(file[5:8])
185 doy = int(file[5:8])
186
186
187
187
188 except:
188 except:
189 continue
189 continue
190
190
191 if (os.path.splitext(file)[-1].lower() != ext.lower()):
191 if (os.path.splitext(file)[-1].lower() != ext.lower()):
192 continue
192 continue
193
193
194 validFilelist.append(file)
194 validFilelist.append(file)
195
195
196 if validFilelist:
196 if validFilelist:
197 validFilelist = sorted( validFilelist, key=str.lower )
197 validFilelist = sorted( validFilelist, key=str.lower )
198 return validFilelist[-1]
198 return validFilelist[-1]
199
199
200 return None
200 return None
201
201
202 def checkForRealPath(path, foldercounter, year, doy, set, ext):
202 def checkForRealPath(path, foldercounter, year, doy, set, ext):
203 """
203 """
204 Por ser Linux Case Sensitive entonces checkForRealPath encuentra el nombre correcto de un path,
204 Por ser Linux Case Sensitive entonces checkForRealPath encuentra el nombre correcto de un path,
205 Prueba por varias combinaciones de nombres entre mayusculas y minusculas para determinar
205 Prueba por varias combinaciones de nombres entre mayusculas y minusculas para determinar
206 el path exacto de un determinado file.
206 el path exacto de un determinado file.
207
207
208 Example :
208 Example :
209 nombre correcto del file es .../.../D2009307/P2009307367.ext
209 nombre correcto del file es .../.../D2009307/P2009307367.ext
210
210
211 Entonces la funcion prueba con las siguientes combinaciones
211 Entonces la funcion prueba con las siguientes combinaciones
212 .../.../y2009307367.ext
212 .../.../y2009307367.ext
213 .../.../Y2009307367.ext
213 .../.../Y2009307367.ext
214 .../.../x2009307/y2009307367.ext
214 .../.../x2009307/y2009307367.ext
215 .../.../x2009307/Y2009307367.ext
215 .../.../x2009307/Y2009307367.ext
216 .../.../X2009307/y2009307367.ext
216 .../.../X2009307/y2009307367.ext
217 .../.../X2009307/Y2009307367.ext
217 .../.../X2009307/Y2009307367.ext
218 siendo para este caso, la ultima combinacion de letras, identica al file buscado
218 siendo para este caso, la ultima combinacion de letras, identica al file buscado
219
219
220 Return:
220 Return:
221 Si encuentra la cobinacion adecuada devuelve el path completo y el nombre del file
221 Si encuentra la cobinacion adecuada devuelve el path completo y el nombre del file
222 caso contrario devuelve None como path y el la ultima combinacion de nombre en mayusculas
222 caso contrario devuelve None como path y el la ultima combinacion de nombre en mayusculas
223 para el filename
223 para el filename
224 """
224 """
225 fullfilename = None
225 fullfilename = None
226 find_flag = False
226 find_flag = False
227 filename = None
227 filename = None
228
228
229 prefixDirList = [None,'d','D']
229 prefixDirList = [None,'d','D']
230 if ext.lower() == ".r": #voltage
230 if ext.lower() == ".r": #voltage
231 prefixFileList = ['d','D']
231 prefixFileList = ['d','D']
232 elif ext.lower() == ".pdata": #spectra
232 elif ext.lower() == ".pdata": #spectra
233 prefixFileList = ['p','P']
233 prefixFileList = ['p','P']
234 else:
234 else:
235 return None, filename
235 return None, filename
236
236
237 #barrido por las combinaciones posibles
237 #barrido por las combinaciones posibles
238 for prefixDir in prefixDirList:
238 for prefixDir in prefixDirList:
239 thispath = path
239 thispath = path
240 if prefixDir != None:
240 if prefixDir != None:
241 #formo el nombre del directorio xYYYYDDD (x=d o x=D)
241 #formo el nombre del directorio xYYYYDDD (x=d o x=D)
242 if foldercounter == 0:
242 if foldercounter == 0:
243 thispath = os.path.join(path, "%s%04d%03d" % ( prefixDir, year, doy ))
243 thispath = os.path.join(path, "%s%04d%03d" % ( prefixDir, year, doy ))
244 else:
244 else:
245 thispath = os.path.join(path, "%s%04d%03d_%02d" % ( prefixDir, year, doy , foldercounter))
245 thispath = os.path.join(path, "%s%04d%03d_%02d" % ( prefixDir, year, doy , foldercounter))
246 for prefixFile in prefixFileList: #barrido por las dos combinaciones posibles de "D"
246 for prefixFile in prefixFileList: #barrido por las dos combinaciones posibles de "D"
247 filename = "%s%04d%03d%03d%s" % ( prefixFile, year, doy, set, ext ) #formo el nombre del file xYYYYDDDSSS.ext
247 filename = "%s%04d%03d%03d%s" % ( prefixFile, year, doy, set, ext ) #formo el nombre del file xYYYYDDDSSS.ext
248 fullfilename = os.path.join( thispath, filename ) #formo el path completo
248 fullfilename = os.path.join( thispath, filename ) #formo el path completo
249
249
250 if os.path.exists( fullfilename ): #verifico que exista
250 if os.path.exists( fullfilename ): #verifico que exista
251 find_flag = True
251 find_flag = True
252 break
252 break
253 if find_flag:
253 if find_flag:
254 break
254 break
255
255
256 if not(find_flag):
256 if not(find_flag):
257 return None, filename
257 return None, filename
258
258
259 return fullfilename, filename
259 return fullfilename, filename
260
260
261 def isDoyFolder(folder):
261 def isDoyFolder(folder):
262 try:
262 try:
263 year = int(folder[1:5])
263 year = int(folder[1:5])
264 except:
264 except:
265 return 0
265 return 0
266
266
267 try:
267 try:
268 doy = int(folder[5:8])
268 doy = int(folder[5:8])
269 except:
269 except:
270 return 0
270 return 0
271
271
272 return 1
272 return 1
273
273
274 class JRODataIO:
274 class JRODataIO:
275
275
276 c = 3E8
276 c = 3E8
277
277
278 isConfig = False
278 isConfig = False
279
279
280 basicHeaderObj = BasicHeader(LOCALTIME)
280 basicHeaderObj = BasicHeader(LOCALTIME)
281
281
282 systemHeaderObj = SystemHeader()
282 systemHeaderObj = SystemHeader()
283
283
284 radarControllerHeaderObj = RadarControllerHeader()
284 radarControllerHeaderObj = RadarControllerHeader()
285
285
286 processingHeaderObj = ProcessingHeader()
286 processingHeaderObj = ProcessingHeader()
287
287
288 online = 0
288 online = 0
289
289
290 dtype = None
290 dtype = None
291
291
292 pathList = []
292 pathList = []
293
293
294 filenameList = []
294 filenameList = []
295
295
296 filename = None
296 filename = None
297
297
298 ext = None
298 ext = None
299
299
300 flagIsNewFile = 1
300 flagIsNewFile = 1
301
301
302 flagTimeBlock = 0
302 flagTimeBlock = 0
303
303
304 flagIsNewBlock = 0
304 flagIsNewBlock = 0
305
305
306 fp = None
306 fp = None
307
307
308 firstHeaderSize = 0
308 firstHeaderSize = 0
309
309
310 basicHeaderSize = 24
310 basicHeaderSize = 24
311
311
312 versionFile = 1103
312 versionFile = 1103
313
313
314 fileSize = None
314 fileSize = None
315
315
316 ippSeconds = None
316 ippSeconds = None
317
317
318 fileSizeByHeader = None
318 fileSizeByHeader = None
319
319
320 fileIndex = None
320 fileIndex = None
321
321
322 profileIndex = None
322 profileIndex = None
323
323
324 blockIndex = None
324 blockIndex = None
325
325
326 nTotalBlocks = None
326 nTotalBlocks = None
327
327
328 maxTimeStep = 30
328 maxTimeStep = 30
329
329
330 lastUTTime = None
330 lastUTTime = None
331
331
332 datablock = None
332 datablock = None
333
333
334 dataOut = None
334 dataOut = None
335
335
336 blocksize = None
336 blocksize = None
337
337
338 def __init__(self):
338 def __init__(self):
339
339
340 raise ValueError, "Not implemented"
340 raise ValueError, "Not implemented"
341
341
342 def run(self):
342 def run(self):
343
343
344 raise ValueError, "Not implemented"
344 raise ValueError, "Not implemented"
345
345
346 def getOutput(self):
346 def getOutput(self):
347
347
348 return self.dataOut
348 return self.dataOut
349
349
350 class JRODataReader(JRODataIO, ProcessingUnit):
350 class JRODataReader(JRODataIO, ProcessingUnit):
351
351
352 nReadBlocks = 0
352 nReadBlocks = 0
353
353
354 delay = 10 #number of seconds waiting a new file
354 delay = 10 #number of seconds waiting a new file
355
355
356 nTries = 3 #quantity tries
356 nTries = 3 #quantity tries
357
357
358 nFiles = 3 #number of files for searching
358 nFiles = 3 #number of files for searching
359
359
360 path = None
360 path = None
361
361
362 foldercounter = 0
362 foldercounter = 0
363
363
364 flagNoMoreFiles = 0
364 flagNoMoreFiles = 0
365
365
366 datetimeList = []
366 datetimeList = []
367
367
368 __isFirstTimeOnline = 1
368 __isFirstTimeOnline = 1
369
369
370 __printInfo = True
370 __printInfo = True
371
371
372 profileIndex = None
372 profileIndex = None
373
373
374 def __init__(self):
374 def __init__(self):
375
375
376 """
376 """
377
377
378 """
378 """
379
379
380 raise ValueError, "This method has not been implemented"
380 raise ValueError, "This method has not been implemented"
381
381
382
382
383 def createObjByDefault(self):
383 def createObjByDefault(self):
384 """
384 """
385
385
386 """
386 """
387 raise ValueError, "This method has not been implemented"
387 raise ValueError, "This method has not been implemented"
388
388
389 def getBlockDimension(self):
389 def getBlockDimension(self):
390
390
391 raise ValueError, "No implemented"
391 raise ValueError, "No implemented"
392
392
393 def __searchFilesOffLine(self,
393 def __searchFilesOffLine(self,
394 path,
394 path,
395 startDate,
395 startDate,
396 endDate,
396 endDate,
397 startTime=datetime.time(0,0,0),
397 startTime=datetime.time(0,0,0),
398 endTime=datetime.time(23,59,59),
398 endTime=datetime.time(23,59,59),
399 set=None,
399 set=None,
400 expLabel='',
400 expLabel='',
401 ext='.r',
401 ext='.r',
402 walk=True):
402 walk=True):
403
403
404 pathList = []
404 pathList = []
405
405
406 if not walk:
406 if not walk:
407 pathList.append(path)
407 pathList.append(path)
408
408
409 else:
409 else:
410 dirList = []
410 dirList = []
411 for thisPath in os.listdir(path):
411 for thisPath in os.listdir(path):
412 if not os.path.isdir(os.path.join(path,thisPath)):
412 if not os.path.isdir(os.path.join(path,thisPath)):
413 continue
413 continue
414 if not isDoyFolder(thisPath):
414 if not isDoyFolder(thisPath):
415 continue
415 continue
416
416
417 dirList.append(thisPath)
417 dirList.append(thisPath)
418
418
419 if not(dirList):
419 if not(dirList):
420 return None, None
420 return None, None
421
421
422 thisDate = startDate
422 thisDate = startDate
423
423
424 while(thisDate <= endDate):
424 while(thisDate <= endDate):
425 year = thisDate.timetuple().tm_year
425 year = thisDate.timetuple().tm_year
426 doy = thisDate.timetuple().tm_yday
426 doy = thisDate.timetuple().tm_yday
427
427
428 matchlist = fnmatch.filter(dirList, '?' + '%4.4d%3.3d' % (year,doy) + '*')
428 matchlist = fnmatch.filter(dirList, '?' + '%4.4d%3.3d' % (year,doy) + '*')
429 if len(matchlist) == 0:
429 if len(matchlist) == 0:
430 thisDate += datetime.timedelta(1)
430 thisDate += datetime.timedelta(1)
431 continue
431 continue
432 for match in matchlist:
432 for match in matchlist:
433 pathList.append(os.path.join(path,match,expLabel))
433 pathList.append(os.path.join(path,match,expLabel))
434
434
435 thisDate += datetime.timedelta(1)
435 thisDate += datetime.timedelta(1)
436
436
437 if pathList == []:
437 if pathList == []:
438 print "Any folder was found for the date range: %s-%s" %(startDate, endDate)
438 print "Any folder was found for the date range: %s-%s" %(startDate, endDate)
439 return None, None
439 return None, None
440
440
441 print "%d folder(s) was(were) found for the date range: %s - %s" %(len(pathList), startDate, endDate)
441 print "%d folder(s) was(were) found for the date range: %s - %s" %(len(pathList), startDate, endDate)
442
442
443 filenameList = []
443 filenameList = []
444 datetimeList = []
444 datetimeList = []
445
445
446 for i in range(len(pathList)):
446 for i in range(len(pathList)):
447
447
448 thisPath = pathList[i]
448 thisPath = pathList[i]
449
449
450 fileList = glob.glob1(thisPath, "*%s" %ext)
450 fileList = glob.glob1(thisPath, "*%s" %ext)
451 fileList.sort()
451 fileList.sort()
452
452
453 for file in fileList:
453 for file in fileList:
454
454
455 filename = os.path.join(thisPath,file)
455 filename = os.path.join(thisPath,file)
456 thisDatetime = isFileinThisTime(filename, startTime, endTime)
456 thisDatetime = isFileinThisTime(filename, startTime, endTime)
457
457
458 if not(thisDatetime):
458 if not(thisDatetime):
459 continue
459 continue
460
460
461 filenameList.append(filename)
461 filenameList.append(filename)
462 datetimeList.append(thisDatetime)
462 datetimeList.append(thisDatetime)
463
463
464 if not(filenameList):
464 if not(filenameList):
465 print "Any file was found for the time range %s - %s" %(startTime, endTime)
465 print "Any file was found for the time range %s - %s" %(startTime, endTime)
466 return None, None
466 return None, None
467
467
468 print "%d file(s) was(were) found for the time range: %s - %s" %(len(filenameList), startTime, endTime)
468 print "%d file(s) was(were) found for the time range: %s - %s" %(len(filenameList), startTime, endTime)
469 print
469 print
470
470
471 for i in range(len(filenameList)):
471 for i in range(len(filenameList)):
472 print "%s -> [%s]" %(filenameList[i], datetimeList[i].ctime())
472 print "%s -> [%s]" %(filenameList[i], datetimeList[i].ctime())
473
473
474 self.filenameList = filenameList
474 self.filenameList = filenameList
475 self.datetimeList = datetimeList
475 self.datetimeList = datetimeList
476
476
477 return pathList, filenameList
477 return pathList, filenameList
478
478
479 def __searchFilesOnLine(self, path, expLabel = "", ext = None, walk=True, set=None):
479 def __searchFilesOnLine(self, path, expLabel = "", ext = None, walk=True, set=None):
480
480
481 """
481 """
482 Busca el ultimo archivo de la ultima carpeta (determinada o no por startDateTime) y
482 Busca el ultimo archivo de la ultima carpeta (determinada o no por startDateTime) y
483 devuelve el archivo encontrado ademas de otros datos.
483 devuelve el archivo encontrado ademas de otros datos.
484
484
485 Input:
485 Input:
486 path : carpeta donde estan contenidos los files que contiene data
486 path : carpeta donde estan contenidos los files que contiene data
487
487
488 expLabel : Nombre del subexperimento (subfolder)
488 expLabel : Nombre del subexperimento (subfolder)
489
489
490 ext : extension de los files
490 ext : extension de los files
491
491
492 walk : Si es habilitado no realiza busquedas dentro de los ubdirectorios (doypath)
492 walk : Si es habilitado no realiza busquedas dentro de los ubdirectorios (doypath)
493
493
494 Return:
494 Return:
495 directory : eL directorio donde esta el file encontrado
495 directory : eL directorio donde esta el file encontrado
496 filename : el ultimo file de una determinada carpeta
496 filename : el ultimo file de una determinada carpeta
497 year : el anho
497 year : el anho
498 doy : el numero de dia del anho
498 doy : el numero de dia del anho
499 set : el set del archivo
499 set : el set del archivo
500
500
501
501
502 """
502 """
503 dirList = []
503 dirList = []
504
504
505 if not walk:
505 if not walk:
506 fullpath = path
506 fullpath = path
507 foldercounter = 0
507 foldercounter = 0
508 else:
508 else:
509 #Filtra solo los directorios
509 #Filtra solo los directorios
510 for thisPath in os.listdir(path):
510 for thisPath in os.listdir(path):
511 if not os.path.isdir(os.path.join(path,thisPath)):
511 if not os.path.isdir(os.path.join(path,thisPath)):
512 continue
512 continue
513 if not isDoyFolder(thisPath):
513 if not isDoyFolder(thisPath):
514 continue
514 continue
515
515
516 dirList.append(thisPath)
516 dirList.append(thisPath)
517
517
518 if not(dirList):
518 if not(dirList):
519 return None, None, None, None, None, None
519 return None, None, None, None, None, None
520
520
521 dirList = sorted( dirList, key=str.lower )
521 dirList = sorted( dirList, key=str.lower )
522
522
523 doypath = dirList[-1]
523 doypath = dirList[-1]
524 foldercounter = int(doypath.split('_')[1]) if len(doypath.split('_'))>1 else 0
524 foldercounter = int(doypath.split('_')[1]) if len(doypath.split('_'))>1 else 0
525 fullpath = os.path.join(path, doypath, expLabel)
525 fullpath = os.path.join(path, doypath, expLabel)
526
526
527
527
528 print "%s folder was found: " %(fullpath )
528 print "%s folder was found: " %(fullpath )
529
529
530 if set == None:
530 if set == None:
531 filename = getlastFileFromPath(fullpath, ext)
531 filename = getlastFileFromPath(fullpath, ext)
532 else:
532 else:
533 filename = getFileFromSet(fullpath, ext, set)
533 filename = getFileFromSet(fullpath, ext, set)
534
534
535 if not(filename):
535 if not(filename):
536 return None, None, None, None, None, None
536 return None, None, None, None, None, None
537
537
538 print "%s file was found" %(filename)
538 print "%s file was found" %(filename)
539
539
540 if not(self.__verifyFile(os.path.join(fullpath, filename))):
540 if not(self.__verifyFile(os.path.join(fullpath, filename))):
541 return None, None, None, None, None, None
541 return None, None, None, None, None, None
542
542
543 year = int( filename[1:5] )
543 year = int( filename[1:5] )
544 doy = int( filename[5:8] )
544 doy = int( filename[5:8] )
545 set = int( filename[8:11] )
545 set = int( filename[8:11] )
546
546
547 return fullpath, foldercounter, filename, year, doy, set
547 return fullpath, foldercounter, filename, year, doy, set
548
548
549 def __setNextFileOffline(self):
549 def __setNextFileOffline(self):
550
550
551 idFile = self.fileIndex
551 idFile = self.fileIndex
552
552
553 while (True):
553 while (True):
554 idFile += 1
554 idFile += 1
555 if not(idFile < len(self.filenameList)):
555 if not(idFile < len(self.filenameList)):
556 self.flagNoMoreFiles = 1
556 self.flagNoMoreFiles = 1
557 print "No more Files"
557 print "No more Files"
558 return 0
558 return 0
559
559
560 filename = self.filenameList[idFile]
560 filename = self.filenameList[idFile]
561
561
562 if not(self.__verifyFile(filename)):
562 if not(self.__verifyFile(filename)):
563 continue
563 continue
564
564
565 fileSize = os.path.getsize(filename)
565 fileSize = os.path.getsize(filename)
566 fp = open(filename,'rb')
566 fp = open(filename,'rb')
567 break
567 break
568
568
569 self.flagIsNewFile = 1
569 self.flagIsNewFile = 1
570 self.fileIndex = idFile
570 self.fileIndex = idFile
571 self.filename = filename
571 self.filename = filename
572 self.fileSize = fileSize
572 self.fileSize = fileSize
573 self.fp = fp
573 self.fp = fp
574
574
575 print "Setting the file: %s"%self.filename
575 print "Setting the file: %s"%self.filename
576
576
577 return 1
577 return 1
578
578
579 def __setNextFileOnline(self):
579 def __setNextFileOnline(self):
580 """
580 """
581 Busca el siguiente file que tenga suficiente data para ser leida, dentro de un folder especifico, si
581 Busca el siguiente file que tenga suficiente data para ser leida, dentro de un folder especifico, si
582 no encuentra un file valido espera un tiempo determinado y luego busca en los posibles n files
582 no encuentra un file valido espera un tiempo determinado y luego busca en los posibles n files
583 siguientes.
583 siguientes.
584
584
585 Affected:
585 Affected:
586 self.flagIsNewFile
586 self.flagIsNewFile
587 self.filename
587 self.filename
588 self.fileSize
588 self.fileSize
589 self.fp
589 self.fp
590 self.set
590 self.set
591 self.flagNoMoreFiles
591 self.flagNoMoreFiles
592
592
593 Return:
593 Return:
594 0 : si luego de una busqueda del siguiente file valido este no pudo ser encontrado
594 0 : si luego de una busqueda del siguiente file valido este no pudo ser encontrado
595 1 : si el file fue abierto con exito y esta listo a ser leido
595 1 : si el file fue abierto con exito y esta listo a ser leido
596
596
597 Excepciones:
597 Excepciones:
598 Si un determinado file no puede ser abierto
598 Si un determinado file no puede ser abierto
599 """
599 """
600 nFiles = 0
600 nFiles = 0
601 fileOk_flag = False
601 fileOk_flag = False
602 firstTime_flag = True
602 firstTime_flag = True
603
603
604 self.set += 1
604 self.set += 1
605
605
606 if self.set > 999:
606 if self.set > 999:
607 self.set = 0
607 self.set = 0
608 self.foldercounter += 1
608 self.foldercounter += 1
609
609
610 #busca el 1er file disponible
610 #busca el 1er file disponible
611 fullfilename, filename = checkForRealPath( self.path, self.foldercounter, self.year, self.doy, self.set, self.ext )
611 fullfilename, filename = checkForRealPath( self.path, self.foldercounter, self.year, self.doy, self.set, self.ext )
612 if fullfilename:
612 if fullfilename:
613 if self.__verifyFile(fullfilename, False):
613 if self.__verifyFile(fullfilename, False):
614 fileOk_flag = True
614 fileOk_flag = True
615
615
616 #si no encuentra un file entonces espera y vuelve a buscar
616 #si no encuentra un file entonces espera y vuelve a buscar
617 if not(fileOk_flag):
617 if not(fileOk_flag):
618 for nFiles in range(self.nFiles+1): #busco en los siguientes self.nFiles+1 files posibles
618 for nFiles in range(self.nFiles+1): #busco en los siguientes self.nFiles+1 files posibles
619
619
620 if firstTime_flag: #si es la 1era vez entonces hace el for self.nTries veces
620 if firstTime_flag: #si es la 1era vez entonces hace el for self.nTries veces
621 tries = self.nTries
621 tries = self.nTries
622 else:
622 else:
623 tries = 1 #si no es la 1era vez entonces solo lo hace una vez
623 tries = 1 #si no es la 1era vez entonces solo lo hace una vez
624
624
625 for nTries in range( tries ):
625 for nTries in range( tries ):
626 if firstTime_flag:
626 if firstTime_flag:
627 print "\tWaiting %0.2f sec for the file \"%s\" , try %03d ..." % ( self.delay, filename, nTries+1 )
627 print "\tWaiting %0.2f sec for the file \"%s\" , try %03d ..." % ( self.delay, filename, nTries+1 )
628 time.sleep( self.delay )
628 time.sleep( self.delay )
629 else:
629 else:
630 print "\tSearching next \"%s%04d%03d%03d%s\" file ..." % (self.optchar, self.year, self.doy, self.set, self.ext)
630 print "\tSearching next \"%s%04d%03d%03d%s\" file ..." % (self.optchar, self.year, self.doy, self.set, self.ext)
631
631
632 fullfilename, filename = checkForRealPath( self.path, self.foldercounter, self.year, self.doy, self.set, self.ext )
632 fullfilename, filename = checkForRealPath( self.path, self.foldercounter, self.year, self.doy, self.set, self.ext )
633 if fullfilename:
633 if fullfilename:
634 if self.__verifyFile(fullfilename):
634 if self.__verifyFile(fullfilename):
635 fileOk_flag = True
635 fileOk_flag = True
636 break
636 break
637
637
638 if fileOk_flag:
638 if fileOk_flag:
639 break
639 break
640
640
641 firstTime_flag = False
641 firstTime_flag = False
642
642
643 print "\tSkipping the file \"%s\" due to this file doesn't exist" % filename
643 print "\tSkipping the file \"%s\" due to this file doesn't exist" % filename
644 self.set += 1
644 self.set += 1
645
645
646 if nFiles == (self.nFiles-1): #si no encuentro el file buscado cambio de carpeta y busco en la siguiente carpeta
646 if nFiles == (self.nFiles-1): #si no encuentro el file buscado cambio de carpeta y busco en la siguiente carpeta
647 self.set = 0
647 self.set = 0
648 self.doy += 1
648 self.doy += 1
649 self.foldercounter = 0
649 self.foldercounter = 0
650
650
651 if fileOk_flag:
651 if fileOk_flag:
652 self.fileSize = os.path.getsize( fullfilename )
652 self.fileSize = os.path.getsize( fullfilename )
653 self.filename = fullfilename
653 self.filename = fullfilename
654 self.flagIsNewFile = 1
654 self.flagIsNewFile = 1
655 if self.fp != None: self.fp.close()
655 if self.fp != None: self.fp.close()
656 self.fp = open(fullfilename, 'rb')
656 self.fp = open(fullfilename, 'rb')
657 self.flagNoMoreFiles = 0
657 self.flagNoMoreFiles = 0
658 print 'Setting the file: %s' % fullfilename
658 print 'Setting the file: %s' % fullfilename
659 else:
659 else:
660 self.fileSize = 0
660 self.fileSize = 0
661 self.filename = None
661 self.filename = None
662 self.flagIsNewFile = 0
662 self.flagIsNewFile = 0
663 self.fp = None
663 self.fp = None
664 self.flagNoMoreFiles = 1
664 self.flagNoMoreFiles = 1
665 print 'No more Files'
665 print 'No more Files'
666
666
667 return fileOk_flag
667 return fileOk_flag
668
668
669
669
670 def setNextFile(self):
670 def setNextFile(self):
671 if self.fp != None:
671 if self.fp != None:
672 self.fp.close()
672 self.fp.close()
673
673
674 if self.online:
674 if self.online:
675 newFile = self.__setNextFileOnline()
675 newFile = self.__setNextFileOnline()
676 else:
676 else:
677 newFile = self.__setNextFileOffline()
677 newFile = self.__setNextFileOffline()
678
678
679 if not(newFile):
679 if not(newFile):
680 return 0
680 return 0
681
681
682 self.__readFirstHeader()
682 self.__readFirstHeader()
683 self.nReadBlocks = 0
683 self.nReadBlocks = 0
684 return 1
684 return 1
685
685
686 def __waitNewBlock(self):
686 def __waitNewBlock(self):
687 """
687 """
688 Return 1 si se encontro un nuevo bloque de datos, 0 de otra forma.
688 Return 1 si se encontro un nuevo bloque de datos, 0 de otra forma.
689
689
690 Si el modo de lectura es OffLine siempre retorn 0
690 Si el modo de lectura es OffLine siempre retorn 0
691 """
691 """
692 if not self.online:
692 if not self.online:
693 return 0
693 return 0
694
694
695 if (self.nReadBlocks >= self.processingHeaderObj.dataBlocksPerFile):
695 if (self.nReadBlocks >= self.processingHeaderObj.dataBlocksPerFile):
696 return 0
696 return 0
697
697
698 currentPointer = self.fp.tell()
698 currentPointer = self.fp.tell()
699
699
700 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
700 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
701
701
702 for nTries in range( self.nTries ):
702 for nTries in range( self.nTries ):
703
703
704 self.fp.close()
704 self.fp.close()
705 self.fp = open( self.filename, 'rb' )
705 self.fp = open( self.filename, 'rb' )
706 self.fp.seek( currentPointer )
706 self.fp.seek( currentPointer )
707
707
708 self.fileSize = os.path.getsize( self.filename )
708 self.fileSize = os.path.getsize( self.filename )
709 currentSize = self.fileSize - currentPointer
709 currentSize = self.fileSize - currentPointer
710
710
711 if ( currentSize >= neededSize ):
711 if ( currentSize >= neededSize ):
712 self.__rdBasicHeader()
712 self.__rdBasicHeader()
713 return 1
713 return 1
714
714
715 if self.fileSize == self.fileSizeByHeader:
715 if self.fileSize == self.fileSizeByHeader:
716 # self.flagEoF = True
716 # self.flagEoF = True
717 return 0
717 return 0
718
718
719 print "\tWaiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
719 print "\tWaiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
720 time.sleep( self.delay )
720 time.sleep( self.delay )
721
721
722
722
723 return 0
723 return 0
724
724
725 def waitDataBlock(self,pointer_location):
725 def waitDataBlock(self,pointer_location):
726
726
727 currentPointer = pointer_location
727 currentPointer = pointer_location
728
728
729 neededSize = self.processingHeaderObj.blockSize #+ self.basicHeaderSize
729 neededSize = self.processingHeaderObj.blockSize #+ self.basicHeaderSize
730
730
731 for nTries in range( self.nTries ):
731 for nTries in range( self.nTries ):
732 self.fp.close()
732 self.fp.close()
733 self.fp = open( self.filename, 'rb' )
733 self.fp = open( self.filename, 'rb' )
734 self.fp.seek( currentPointer )
734 self.fp.seek( currentPointer )
735
735
736 self.fileSize = os.path.getsize( self.filename )
736 self.fileSize = os.path.getsize( self.filename )
737 currentSize = self.fileSize - currentPointer
737 currentSize = self.fileSize - currentPointer
738
738
739 if ( currentSize >= neededSize ):
739 if ( currentSize >= neededSize ):
740 return 1
740 return 1
741
741
742 print "\tWaiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
742 print "\tWaiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
743 time.sleep( self.delay )
743 time.sleep( self.delay )
744
744
745 return 0
745 return 0
746
746
747
747
748 def __jumpToLastBlock(self):
748 def __jumpToLastBlock(self):
749
749
750 if not(self.__isFirstTimeOnline):
750 if not(self.__isFirstTimeOnline):
751 return
751 return
752
752
753 csize = self.fileSize - self.fp.tell()
753 csize = self.fileSize - self.fp.tell()
754 blocksize = self.processingHeaderObj.blockSize
754 blocksize = self.processingHeaderObj.blockSize
755
755
756 #salta el primer bloque de datos
756 #salta el primer bloque de datos
757 if csize > self.processingHeaderObj.blockSize:
757 if csize > self.processingHeaderObj.blockSize:
758 self.fp.seek(self.fp.tell() + blocksize)
758 self.fp.seek(self.fp.tell() + blocksize)
759 else:
759 else:
760 return
760 return
761
761
762 csize = self.fileSize - self.fp.tell()
762 csize = self.fileSize - self.fp.tell()
763 neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize
763 neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize
764 while True:
764 while True:
765
765
766 if self.fp.tell()<self.fileSize:
766 if self.fp.tell()<self.fileSize:
767 self.fp.seek(self.fp.tell() + neededsize)
767 self.fp.seek(self.fp.tell() + neededsize)
768 else:
768 else:
769 self.fp.seek(self.fp.tell() - neededsize)
769 self.fp.seek(self.fp.tell() - neededsize)
770 break
770 break
771
771
772 # csize = self.fileSize - self.fp.tell()
772 # csize = self.fileSize - self.fp.tell()
773 # neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize
773 # neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize
774 # factor = int(csize/neededsize)
774 # factor = int(csize/neededsize)
775 # if factor > 0:
775 # if factor > 0:
776 # self.fp.seek(self.fp.tell() + factor*neededsize)
776 # self.fp.seek(self.fp.tell() + factor*neededsize)
777
777
778 self.flagIsNewFile = 0
778 self.flagIsNewFile = 0
779 self.__isFirstTimeOnline = 0
779 self.__isFirstTimeOnline = 0
780
780
781
781
782 def __setNewBlock(self):
782 def __setNewBlock(self):
783
783
784 if self.fp == None:
784 if self.fp == None:
785 return 0
785 return 0
786
786
787 if self.online:
787 if self.online:
788 self.__jumpToLastBlock()
788 self.__jumpToLastBlock()
789
789
790 if self.flagIsNewFile:
790 if self.flagIsNewFile:
791 return 1
791 return 1
792
792
793 self.lastUTTime = self.basicHeaderObj.utc
793 self.lastUTTime = self.basicHeaderObj.utc
794 currentSize = self.fileSize - self.fp.tell()
794 currentSize = self.fileSize - self.fp.tell()
795 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
795 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
796
796
797 if (currentSize >= neededSize):
797 if (currentSize >= neededSize):
798 self.__rdBasicHeader()
798 self.__rdBasicHeader()
799 return 1
799 return 1
800
800
801 if self.__waitNewBlock():
801 if self.__waitNewBlock():
802 return 1
802 return 1
803
803
804 if not(self.setNextFile()):
804 if not(self.setNextFile()):
805 return 0
805 return 0
806
806
807 deltaTime = self.basicHeaderObj.utc - self.lastUTTime #
807 deltaTime = self.basicHeaderObj.utc - self.lastUTTime #
808
808
809 self.flagTimeBlock = 0
809 self.flagTimeBlock = 0
810
810
811 if deltaTime > self.maxTimeStep:
811 if deltaTime > self.maxTimeStep:
812 self.flagTimeBlock = 1
812 self.flagTimeBlock = 1
813
813
814 return 1
814 return 1
815
815
816
816
817 def readNextBlock(self):
817 def readNextBlock(self):
818 if not(self.__setNewBlock()):
818 if not(self.__setNewBlock()):
819 return 0
819 return 0
820
820
821 if not(self.readBlock()):
821 if not(self.readBlock()):
822 return 0
822 return 0
823
823
824 return 1
824 return 1
825
825
826 def __rdProcessingHeader(self, fp=None):
826 def __rdProcessingHeader(self, fp=None):
827 if fp == None:
827 if fp == None:
828 fp = self.fp
828 fp = self.fp
829
829
830 self.processingHeaderObj.read(fp)
830 self.processingHeaderObj.read(fp)
831
831
832 def __rdRadarControllerHeader(self, fp=None):
832 def __rdRadarControllerHeader(self, fp=None):
833 if fp == None:
833 if fp == None:
834 fp = self.fp
834 fp = self.fp
835
835
836 self.radarControllerHeaderObj.read(fp)
836 self.radarControllerHeaderObj.read(fp)
837
837
838 def __rdSystemHeader(self, fp=None):
838 def __rdSystemHeader(self, fp=None):
839 if fp == None:
839 if fp == None:
840 fp = self.fp
840 fp = self.fp
841
841
842 self.systemHeaderObj.read(fp)
842 self.systemHeaderObj.read(fp)
843
843
844 def __rdBasicHeader(self, fp=None):
844 def __rdBasicHeader(self, fp=None):
845 if fp == None:
845 if fp == None:
846 fp = self.fp
846 fp = self.fp
847
847
848 self.basicHeaderObj.read(fp)
848 self.basicHeaderObj.read(fp)
849
849
850
850
851 def __readFirstHeader(self):
851 def __readFirstHeader(self):
852 self.__rdBasicHeader()
852 self.__rdBasicHeader()
853 self.__rdSystemHeader()
853 self.__rdSystemHeader()
854 self.__rdRadarControllerHeader()
854 self.__rdRadarControllerHeader()
855 self.__rdProcessingHeader()
855 self.__rdProcessingHeader()
856
856
857 self.firstHeaderSize = self.basicHeaderObj.size
857 self.firstHeaderSize = self.basicHeaderObj.size
858
858
859 datatype = int(numpy.log2((self.processingHeaderObj.processFlags & PROCFLAG.DATATYPE_MASK))-numpy.log2(PROCFLAG.DATATYPE_CHAR))
859 datatype = int(numpy.log2((self.processingHeaderObj.processFlags & PROCFLAG.DATATYPE_MASK))-numpy.log2(PROCFLAG.DATATYPE_CHAR))
860 if datatype == 0:
860 if datatype == 0:
861 datatype_str = numpy.dtype([('real','<i1'),('imag','<i1')])
861 datatype_str = numpy.dtype([('real','<i1'),('imag','<i1')])
862 elif datatype == 1:
862 elif datatype == 1:
863 datatype_str = numpy.dtype([('real','<i2'),('imag','<i2')])
863 datatype_str = numpy.dtype([('real','<i2'),('imag','<i2')])
864 elif datatype == 2:
864 elif datatype == 2:
865 datatype_str = numpy.dtype([('real','<i4'),('imag','<i4')])
865 datatype_str = numpy.dtype([('real','<i4'),('imag','<i4')])
866 elif datatype == 3:
866 elif datatype == 3:
867 datatype_str = numpy.dtype([('real','<i8'),('imag','<i8')])
867 datatype_str = numpy.dtype([('real','<i8'),('imag','<i8')])
868 elif datatype == 4:
868 elif datatype == 4:
869 datatype_str = numpy.dtype([('real','<f4'),('imag','<f4')])
869 datatype_str = numpy.dtype([('real','<f4'),('imag','<f4')])
870 elif datatype == 5:
870 elif datatype == 5:
871 datatype_str = numpy.dtype([('real','<f8'),('imag','<f8')])
871 datatype_str = numpy.dtype([('real','<f8'),('imag','<f8')])
872 else:
872 else:
873 raise ValueError, 'Data type was not defined'
873 raise ValueError, 'Data type was not defined'
874
874
875 self.dtype = datatype_str
875 self.dtype = datatype_str
876 self.ippSeconds = 2 * 1000 * self.radarControllerHeaderObj.ipp / self.c
876 self.ippSeconds = 2 * 1000 * self.radarControllerHeaderObj.ipp / self.c
877 self.fileSizeByHeader = self.processingHeaderObj.dataBlocksPerFile * self.processingHeaderObj.blockSize + self.firstHeaderSize + self.basicHeaderSize*(self.processingHeaderObj.dataBlocksPerFile - 1)
877 self.fileSizeByHeader = self.processingHeaderObj.dataBlocksPerFile * self.processingHeaderObj.blockSize + self.firstHeaderSize + self.basicHeaderSize*(self.processingHeaderObj.dataBlocksPerFile - 1)
878 # self.dataOut.channelList = numpy.arange(self.systemHeaderObj.numChannels)
878 # self.dataOut.channelList = numpy.arange(self.systemHeaderObj.numChannels)
879 # self.dataOut.channelIndexList = numpy.arange(self.systemHeaderObj.numChannels)
879 # self.dataOut.channelIndexList = numpy.arange(self.systemHeaderObj.numChannels)
880 self.getBlockDimension()
880 self.getBlockDimension()
881
881
882
882
883 def __verifyFile(self, filename, msgFlag=True):
883 def __verifyFile(self, filename, msgFlag=True):
884 msg = None
884 msg = None
885 try:
885 try:
886 fp = open(filename, 'rb')
886 fp = open(filename, 'rb')
887 currentPosition = fp.tell()
887 currentPosition = fp.tell()
888 except:
888 except:
889 if msgFlag:
889 if msgFlag:
890 print "The file %s can't be opened" % (filename)
890 print "The file %s can't be opened" % (filename)
891 return False
891 return False
892
892
893 neededSize = self.processingHeaderObj.blockSize + self.firstHeaderSize
893 neededSize = self.processingHeaderObj.blockSize + self.firstHeaderSize
894
894
895 if neededSize == 0:
895 if neededSize == 0:
896 basicHeaderObj = BasicHeader(LOCALTIME)
896 basicHeaderObj = BasicHeader(LOCALTIME)
897 systemHeaderObj = SystemHeader()
897 systemHeaderObj = SystemHeader()
898 radarControllerHeaderObj = RadarControllerHeader()
898 radarControllerHeaderObj = RadarControllerHeader()
899 processingHeaderObj = ProcessingHeader()
899 processingHeaderObj = ProcessingHeader()
900
900
901 try:
901 try:
902 if not( basicHeaderObj.read(fp) ): raise IOError
902 if not( basicHeaderObj.read(fp) ): raise IOError
903 if not( systemHeaderObj.read(fp) ): raise IOError
903 if not( systemHeaderObj.read(fp) ): raise IOError
904 if not( radarControllerHeaderObj.read(fp) ): raise IOError
904 if not( radarControllerHeaderObj.read(fp) ): raise IOError
905 if not( processingHeaderObj.read(fp) ): raise IOError
905 if not( processingHeaderObj.read(fp) ): raise IOError
906 data_type = int(numpy.log2((processingHeaderObj.processFlags & PROCFLAG.DATATYPE_MASK))-numpy.log2(PROCFLAG.DATATYPE_CHAR))
906 data_type = int(numpy.log2((processingHeaderObj.processFlags & PROCFLAG.DATATYPE_MASK))-numpy.log2(PROCFLAG.DATATYPE_CHAR))
907
907
908 neededSize = processingHeaderObj.blockSize + basicHeaderObj.size
908 neededSize = processingHeaderObj.blockSize + basicHeaderObj.size
909
909
910 except:
910 except:
911 if msgFlag:
911 if msgFlag:
912 print "\tThe file %s is empty or it hasn't enough data" % filename
912 print "\tThe file %s is empty or it hasn't enough data" % filename
913
913
914 fp.close()
914 fp.close()
915 return False
915 return False
916 else:
916 else:
917 msg = "\tSkipping the file %s due to it hasn't enough data" %filename
917 msg = "\tSkipping the file %s due to it hasn't enough data" %filename
918
918
919 fp.close()
919 fp.close()
920 fileSize = os.path.getsize(filename)
920 fileSize = os.path.getsize(filename)
921 currentSize = fileSize - currentPosition
921 currentSize = fileSize - currentPosition
922 if currentSize < neededSize:
922 if currentSize < neededSize:
923 if msgFlag and (msg != None):
923 if msgFlag and (msg != None):
924 print msg #print"\tSkipping the file %s due to it hasn't enough data" %filename
924 print msg #print"\tSkipping the file %s due to it hasn't enough data" %filename
925 return False
925 return False
926
926
927 return True
927 return True
928
928
929 def setup(self,
929 def setup(self,
930 path=None,
930 path=None,
931 startDate=None,
931 startDate=None,
932 endDate=None,
932 endDate=None,
933 startTime=datetime.time(0,0,0),
933 startTime=datetime.time(0,0,0),
934 endTime=datetime.time(23,59,59),
934 endTime=datetime.time(23,59,59),
935 set=None,
935 set=None,
936 expLabel = "",
936 expLabel = "",
937 ext = None,
937 ext = None,
938 online = False,
938 online = False,
939 delay = 60,
939 delay = 60,
940 walk = True):
940 walk = True):
941
941
942 if path == None:
942 if path == None:
943 raise ValueError, "The path is not valid"
943 raise ValueError, "The path is not valid"
944
944
945 if ext == None:
945 if ext == None:
946 ext = self.ext
946 ext = self.ext
947
947
948 if online:
948 if online:
949 print "Searching files in online mode..."
949 print "Searching files in online mode..."
950
950
951 for nTries in range( self.nTries ):
951 for nTries in range( self.nTries ):
952 fullpath, foldercounter, file, year, doy, set = self.__searchFilesOnLine(path=path, expLabel=expLabel, ext=ext, walk=walk, set=set)
952 fullpath, foldercounter, file, year, doy, set = self.__searchFilesOnLine(path=path, expLabel=expLabel, ext=ext, walk=walk, set=set)
953
953
954 if fullpath:
954 if fullpath:
955 break
955 break
956
956
957 print '\tWaiting %0.2f sec for an valid file in %s: try %02d ...' % (self.delay, path, nTries+1)
957 print '\tWaiting %0.2f sec for an valid file in %s: try %02d ...' % (self.delay, path, nTries+1)
958 time.sleep( self.delay )
958 time.sleep( self.delay )
959
959
960 if not(fullpath):
960 if not(fullpath):
961 print "There 'isn't valied files in %s" % path
961 print "There 'isn't valied files in %s" % path
962 return None
962 return None
963
963
964 self.year = year
964 self.year = year
965 self.doy = doy
965 self.doy = doy
966 self.set = set - 1
966 self.set = set - 1
967 self.path = path
967 self.path = path
968 self.foldercounter = foldercounter
968 self.foldercounter = foldercounter
969
969
970 else:
970 else:
971 print "Searching files in offline mode ..."
971 print "Searching files in offline mode ..."
972 pathList, filenameList = self.__searchFilesOffLine(path, startDate=startDate, endDate=endDate,
972 pathList, filenameList = self.__searchFilesOffLine(path, startDate=startDate, endDate=endDate,
973 startTime=startTime, endTime=endTime,
973 startTime=startTime, endTime=endTime,
974 set=set, expLabel=expLabel, ext=ext,
974 set=set, expLabel=expLabel, ext=ext,
975 walk=walk)
975 walk=walk)
976
976
977 if not(pathList):
977 if not(pathList):
978 print "No *%s files into the folder %s \nfor the range: %s - %s"%(ext, path,
978 print "No *%s files into the folder %s \nfor the range: %s - %s"%(ext, path,
979 datetime.datetime.combine(startDate,startTime).ctime(),
979 datetime.datetime.combine(startDate,startTime).ctime(),
980 datetime.datetime.combine(endDate,endTime).ctime())
980 datetime.datetime.combine(endDate,endTime).ctime())
981
981
982 sys.exit(-1)
982 sys.exit(-1)
983
983
984
984
985 self.fileIndex = -1
985 self.fileIndex = -1
986 self.pathList = pathList
986 self.pathList = pathList
987 self.filenameList = filenameList
987 self.filenameList = filenameList
988
988
989 self.online = online
989 self.online = online
990 self.delay = delay
990 self.delay = delay
991 ext = ext.lower()
991 ext = ext.lower()
992 self.ext = ext
992 self.ext = ext
993
993
994 if not(self.setNextFile()):
994 if not(self.setNextFile()):
995 if (startDate!=None) and (endDate!=None):
995 if (startDate!=None) and (endDate!=None):
996 print "No files in range: %s - %s" %(datetime.datetime.combine(startDate,startTime).ctime(), datetime.datetime.combine(endDate,endTime).ctime())
996 print "No files in range: %s - %s" %(datetime.datetime.combine(startDate,startTime).ctime(), datetime.datetime.combine(endDate,endTime).ctime())
997 elif startDate != None:
997 elif startDate != None:
998 print "No files in range: %s" %(datetime.datetime.combine(startDate,startTime).ctime())
998 print "No files in range: %s" %(datetime.datetime.combine(startDate,startTime).ctime())
999 else:
999 else:
1000 print "No files"
1000 print "No files"
1001
1001
1002 sys.exit(-1)
1002 sys.exit(-1)
1003
1003
1004 # self.updateDataHeader()
1004 # self.updateDataHeader()
1005
1005
1006 return self.dataOut
1006 return self.dataOut
1007
1007
1008 def getBasicHeader(self):
1008 def getBasicHeader(self):
1009
1009
1010 self.dataOut.utctime = self.basicHeaderObj.utc + self.basicHeaderObj.miliSecond/1000. + self.profileIndex * self.ippSeconds
1010 self.dataOut.utctime = self.basicHeaderObj.utc + self.basicHeaderObj.miliSecond/1000. + self.profileIndex * self.ippSeconds
1011
1011
1012 self.dataOut.flagTimeBlock = self.flagTimeBlock
1012 self.dataOut.flagTimeBlock = self.flagTimeBlock
1013
1013
1014 self.dataOut.timeZone = self.basicHeaderObj.timeZone
1014 self.dataOut.timeZone = self.basicHeaderObj.timeZone
1015
1015
1016 self.dataOut.dstFlag = self.basicHeaderObj.dstFlag
1016 self.dataOut.dstFlag = self.basicHeaderObj.dstFlag
1017
1017
1018 self.dataOut.errorCount = self.basicHeaderObj.errorCount
1018 self.dataOut.errorCount = self.basicHeaderObj.errorCount
1019
1019
1020 self.dataOut.useLocalTime = self.basicHeaderObj.useLocalTime
1020 self.dataOut.useLocalTime = self.basicHeaderObj.useLocalTime
1021
1021
1022 def getFirstHeader(self):
1022 def getFirstHeader(self):
1023
1023
1024 raise ValueError, "This method has not been implemented"
1024 raise ValueError, "This method has not been implemented"
1025
1025
1026 def getData():
1026 def getData():
1027
1027
1028 raise ValueError, "This method has not been implemented"
1028 raise ValueError, "This method has not been implemented"
1029
1029
1030 def hasNotDataInBuffer():
1030 def hasNotDataInBuffer():
1031
1031
1032 raise ValueError, "This method has not been implemented"
1032 raise ValueError, "This method has not been implemented"
1033
1033
1034 def readBlock():
1034 def readBlock():
1035
1035
1036 raise ValueError, "This method has not been implemented"
1036 raise ValueError, "This method has not been implemented"
1037
1037
1038 def isEndProcess(self):
1038 def isEndProcess(self):
1039
1039
1040 return self.flagNoMoreFiles
1040 return self.flagNoMoreFiles
1041
1041
1042 def printReadBlocks(self):
1042 def printReadBlocks(self):
1043
1043
1044 print "Number of read blocks per file %04d" %self.nReadBlocks
1044 print "Number of read blocks per file %04d" %self.nReadBlocks
1045
1045
1046 def printTotalBlocks(self):
1046 def printTotalBlocks(self):
1047
1047
1048 print "Number of read blocks %04d" %self.nTotalBlocks
1048 print "Number of read blocks %04d" %self.nTotalBlocks
1049
1049
1050 def printNumberOfBlock(self):
1050 def printNumberOfBlock(self):
1051
1051
1052 if self.flagIsNewBlock:
1052 if self.flagIsNewBlock:
1053 print "Block No. %04d, Total blocks %04d -> %s" %(self.basicHeaderObj.dataBlock, self.nTotalBlocks, self.dataOut.datatime.ctime())
1053 print "Block No. %04d, Total blocks %04d -> %s" %(self.basicHeaderObj.dataBlock, self.nTotalBlocks, self.dataOut.datatime.ctime())
1054
1054
1055 def printInfo(self):
1055 def printInfo(self):
1056
1056
1057 if self.__printInfo == False:
1057 if self.__printInfo == False:
1058 return
1058 return
1059
1059
1060 self.basicHeaderObj.printInfo()
1060 self.basicHeaderObj.printInfo()
1061 self.systemHeaderObj.printInfo()
1061 self.systemHeaderObj.printInfo()
1062 self.radarControllerHeaderObj.printInfo()
1062 self.radarControllerHeaderObj.printInfo()
1063 self.processingHeaderObj.printInfo()
1063 self.processingHeaderObj.printInfo()
1064
1064
1065 self.__printInfo = False
1065 self.__printInfo = False
1066
1066
1067
1067
1068 def run(self, **kwargs):
1068 def run(self, **kwargs):
1069
1069
1070 if not(self.isConfig):
1070 if not(self.isConfig):
1071
1071
1072 # self.dataOut = dataOut
1072 # self.dataOut = dataOut
1073 self.setup(**kwargs)
1073 self.setup(**kwargs)
1074 self.isConfig = True
1074 self.isConfig = True
1075
1075
1076 self.getData()
1076 self.getData()
1077
1077
1078 class JRODataWriter(JRODataIO, Operation):
1078 class JRODataWriter(JRODataIO, Operation):
1079
1079
1080 """
1080 """
1081 Esta clase permite escribir datos a archivos procesados (.r o ,pdata). La escritura
1081 Esta clase permite escribir datos a archivos procesados (.r o ,pdata). La escritura
1082 de los datos siempre se realiza por bloques.
1082 de los datos siempre se realiza por bloques.
1083 """
1083 """
1084
1084
1085 blockIndex = 0
1085 blockIndex = 0
1086
1086
1087 path = None
1087 path = None
1088
1088
1089 setFile = None
1089 setFile = None
1090
1090
1091 profilesPerBlock = None
1091 profilesPerBlock = None
1092
1092
1093 blocksPerFile = None
1093 blocksPerFile = None
1094
1094
1095 nWriteBlocks = 0
1095 nWriteBlocks = 0
1096
1096
1097 def __init__(self, dataOut=None):
1097 def __init__(self, dataOut=None):
1098 raise ValueError, "Not implemented"
1098 raise ValueError, "Not implemented"
1099
1099
1100
1100
1101 def hasAllDataInBuffer(self):
1101 def hasAllDataInBuffer(self):
1102 raise ValueError, "Not implemented"
1102 raise ValueError, "Not implemented"
1103
1103
1104
1104
1105 def setBlockDimension(self):
1105 def setBlockDimension(self):
1106 raise ValueError, "Not implemented"
1106 raise ValueError, "Not implemented"
1107
1107
1108
1108
1109 def writeBlock(self):
1109 def writeBlock(self):
1110 raise ValueError, "No implemented"
1110 raise ValueError, "No implemented"
1111
1111
1112
1112
1113 def putData(self):
1113 def putData(self):
1114 raise ValueError, "No implemented"
1114 raise ValueError, "No implemented"
1115
1115
1116
1116
1117 def setBasicHeader(self):
1117 def setBasicHeader(self):
1118
1118
1119 self.basicHeaderObj.size = self.basicHeaderSize #bytes
1119 self.basicHeaderObj.size = self.basicHeaderSize #bytes
1120 self.basicHeaderObj.version = self.versionFile
1120 self.basicHeaderObj.version = self.versionFile
1121 self.basicHeaderObj.dataBlock = self.nTotalBlocks
1121 self.basicHeaderObj.dataBlock = self.nTotalBlocks
1122
1122
1123 utc = numpy.floor(self.dataOut.utctime)
1123 utc = numpy.floor(self.dataOut.utctime)
1124 milisecond = (self.dataOut.utctime - utc)* 1000.0
1124 milisecond = (self.dataOut.utctime - utc)* 1000.0
1125
1125
1126 self.basicHeaderObj.utc = utc
1126 self.basicHeaderObj.utc = utc
1127 self.basicHeaderObj.miliSecond = milisecond
1127 self.basicHeaderObj.miliSecond = milisecond
1128 self.basicHeaderObj.timeZone = self.dataOut.timeZone
1128 self.basicHeaderObj.timeZone = self.dataOut.timeZone
1129 self.basicHeaderObj.dstFlag = self.dataOut.dstFlag
1129 self.basicHeaderObj.dstFlag = self.dataOut.dstFlag
1130 self.basicHeaderObj.errorCount = self.dataOut.errorCount
1130 self.basicHeaderObj.errorCount = self.dataOut.errorCount
1131
1131
1132 def setFirstHeader(self):
1132 def setFirstHeader(self):
1133 """
1133 """
1134 Obtiene una copia del First Header
1134 Obtiene una copia del First Header
1135
1135
1136 Affected:
1136 Affected:
1137
1137
1138 self.basicHeaderObj
1138 self.basicHeaderObj
1139 self.systemHeaderObj
1139 self.systemHeaderObj
1140 self.radarControllerHeaderObj
1140 self.radarControllerHeaderObj
1141 self.processingHeaderObj self.
1141 self.processingHeaderObj self.
1142
1142
1143 Return:
1143 Return:
1144 None
1144 None
1145 """
1145 """
1146
1146
1147 raise ValueError, "No implemented"
1147 raise ValueError, "No implemented"
1148
1148
1149 def __writeFirstHeader(self):
1149 def __writeFirstHeader(self):
1150 """
1150 """
1151 Escribe el primer header del file es decir el Basic header y el Long header (SystemHeader, RadarControllerHeader, ProcessingHeader)
1151 Escribe el primer header del file es decir el Basic header y el Long header (SystemHeader, RadarControllerHeader, ProcessingHeader)
1152
1152
1153 Affected:
1153 Affected:
1154 __dataType
1154 __dataType
1155
1155
1156 Return:
1156 Return:
1157 None
1157 None
1158 """
1158 """
1159
1159
1160 # CALCULAR PARAMETROS
1160 # CALCULAR PARAMETROS
1161
1161
1162 sizeLongHeader = self.systemHeaderObj.size + self.radarControllerHeaderObj.size + self.processingHeaderObj.size
1162 sizeLongHeader = self.systemHeaderObj.size + self.radarControllerHeaderObj.size + self.processingHeaderObj.size
1163 self.basicHeaderObj.size = self.basicHeaderSize + sizeLongHeader
1163 self.basicHeaderObj.size = self.basicHeaderSize + sizeLongHeader
1164
1164
1165 self.basicHeaderObj.write(self.fp)
1165 self.basicHeaderObj.write(self.fp)
1166 self.systemHeaderObj.write(self.fp)
1166 self.systemHeaderObj.write(self.fp)
1167 self.radarControllerHeaderObj.write(self.fp)
1167 self.radarControllerHeaderObj.write(self.fp)
1168 self.processingHeaderObj.write(self.fp)
1168 self.processingHeaderObj.write(self.fp)
1169
1169
1170 self.dtype = self.dataOut.dtype
1170 self.dtype = self.dataOut.dtype
1171
1171
1172 def __setNewBlock(self):
1172 def __setNewBlock(self):
1173 """
1173 """
1174 Si es un nuevo file escribe el First Header caso contrario escribe solo el Basic Header
1174 Si es un nuevo file escribe el First Header caso contrario escribe solo el Basic Header
1175
1175
1176 Return:
1176 Return:
1177 0 : si no pudo escribir nada
1177 0 : si no pudo escribir nada
1178 1 : Si escribio el Basic el First Header
1178 1 : Si escribio el Basic el First Header
1179 """
1179 """
1180 if self.fp == None:
1180 if self.fp == None:
1181 self.setNextFile()
1181 self.setNextFile()
1182
1182
1183 if self.flagIsNewFile:
1183 if self.flagIsNewFile:
1184 return 1
1184 return 1
1185
1185
1186 if self.blockIndex < self.processingHeaderObj.dataBlocksPerFile:
1186 if self.blockIndex < self.processingHeaderObj.dataBlocksPerFile:
1187 self.basicHeaderObj.write(self.fp)
1187 self.basicHeaderObj.write(self.fp)
1188 return 1
1188 return 1
1189
1189
1190 if not( self.setNextFile() ):
1190 if not( self.setNextFile() ):
1191 return 0
1191 return 0
1192
1192
1193 return 1
1193 return 1
1194
1194
1195
1195
1196 def writeNextBlock(self):
1196 def writeNextBlock(self):
1197 """
1197 """
1198 Selecciona el bloque siguiente de datos y los escribe en un file
1198 Selecciona el bloque siguiente de datos y los escribe en un file
1199
1199
1200 Return:
1200 Return:
1201 0 : Si no hizo pudo escribir el bloque de datos
1201 0 : Si no hizo pudo escribir el bloque de datos
1202 1 : Si no pudo escribir el bloque de datos
1202 1 : Si no pudo escribir el bloque de datos
1203 """
1203 """
1204 if not( self.__setNewBlock() ):
1204 if not( self.__setNewBlock() ):
1205 return 0
1205 return 0
1206
1206
1207 self.writeBlock()
1207 self.writeBlock()
1208
1208
1209 return 1
1209 return 1
1210
1210
1211 def setNextFile(self):
1211 def setNextFile(self):
1212 """
1212 """
1213 Determina el siguiente file que sera escrito
1213 Determina el siguiente file que sera escrito
1214
1214
1215 Affected:
1215 Affected:
1216 self.filename
1216 self.filename
1217 self.subfolder
1217 self.subfolder
1218 self.fp
1218 self.fp
1219 self.setFile
1219 self.setFile
1220 self.flagIsNewFile
1220 self.flagIsNewFile
1221
1221
1222 Return:
1222 Return:
1223 0 : Si el archivo no puede ser escrito
1223 0 : Si el archivo no puede ser escrito
1224 1 : Si el archivo esta listo para ser escrito
1224 1 : Si el archivo esta listo para ser escrito
1225 """
1225 """
1226 ext = self.ext
1226 ext = self.ext
1227 path = self.path
1227 path = self.path
1228
1228
1229 if self.fp != None:
1229 if self.fp != None:
1230 self.fp.close()
1230 self.fp.close()
1231
1231
1232 timeTuple = time.localtime( self.dataOut.utctime)
1232 timeTuple = time.localtime( self.dataOut.utctime)
1233 subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday)
1233 subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday)
1234
1234
1235 fullpath = os.path.join( path, subfolder )
1235 fullpath = os.path.join( path, subfolder )
1236 if not( os.path.exists(fullpath) ):
1236 if not( os.path.exists(fullpath) ):
1237 os.mkdir(fullpath)
1237 os.mkdir(fullpath)
1238 self.setFile = -1 #inicializo mi contador de seteo
1238 self.setFile = -1 #inicializo mi contador de seteo
1239 else:
1239 else:
1240 filesList = os.listdir( fullpath )
1240 filesList = os.listdir( fullpath )
1241 if len( filesList ) > 0:
1241 if len( filesList ) > 0:
1242 filesList = sorted( filesList, key=str.lower )
1242 filesList = sorted( filesList, key=str.lower )
1243 filen = filesList[-1]
1243 filen = filesList[-1]
1244 # el filename debera tener el siguiente formato
1244 # el filename debera tener el siguiente formato
1245 # 0 1234 567 89A BCDE (hex)
1245 # 0 1234 567 89A BCDE (hex)
1246 # x YYYY DDD SSS .ext
1246 # x YYYY DDD SSS .ext
1247 if isNumber( filen[8:11] ):
1247 if isNumber( filen[8:11] ):
1248 self.setFile = int( filen[8:11] ) #inicializo mi contador de seteo al seteo del ultimo file
1248 self.setFile = int( filen[8:11] ) #inicializo mi contador de seteo al seteo del ultimo file
1249 else:
1249 else:
1250 self.setFile = -1
1250 self.setFile = -1
1251 else:
1251 else:
1252 self.setFile = -1 #inicializo mi contador de seteo
1252 self.setFile = -1 #inicializo mi contador de seteo
1253
1253
1254 setFile = self.setFile
1254 setFile = self.setFile
1255 setFile += 1
1255 setFile += 1
1256
1256
1257 file = '%s%4.4d%3.3d%3.3d%s' % (self.optchar,
1257 file = '%s%4.4d%3.3d%3.3d%s' % (self.optchar,
1258 timeTuple.tm_year,
1258 timeTuple.tm_year,
1259 timeTuple.tm_yday,
1259 timeTuple.tm_yday,
1260 setFile,
1260 setFile,
1261 ext )
1261 ext )
1262
1262
1263 filename = os.path.join( path, subfolder, file )
1263 filename = os.path.join( path, subfolder, file )
1264
1264
1265 fp = open( filename,'wb' )
1265 fp = open( filename,'wb' )
1266
1266
1267 self.blockIndex = 0
1267 self.blockIndex = 0
1268
1268
1269 #guardando atributos
1269 #guardando atributos
1270 self.filename = filename
1270 self.filename = filename
1271 self.subfolder = subfolder
1271 self.subfolder = subfolder
1272 self.fp = fp
1272 self.fp = fp
1273 self.setFile = setFile
1273 self.setFile = setFile
1274 self.flagIsNewFile = 1
1274 self.flagIsNewFile = 1
1275
1275
1276 self.setFirstHeader()
1276 self.setFirstHeader()
1277
1277
1278 print 'Writing the file: %s'%self.filename
1278 print 'Writing the file: %s'%self.filename
1279
1279
1280 self.__writeFirstHeader()
1280 self.__writeFirstHeader()
1281
1281
1282 return 1
1282 return 1
1283
1283
1284 def setup(self, dataOut, path, blocksPerFile, profilesPerBlock=64, set=0, ext=None):
1284 def setup(self, dataOut, path, blocksPerFile, profilesPerBlock=64, set=0, ext=None):
1285 """
1285 """
1286 Setea el tipo de formato en la cual sera guardada la data y escribe el First Header
1286 Setea el tipo de formato en la cual sera guardada la data y escribe el First Header
1287
1287
1288 Inputs:
1288 Inputs:
1289 path : el path destino en el cual se escribiran los files a crear
1289 path : el path destino en el cual se escribiran los files a crear
1290 format : formato en el cual sera salvado un file
1290 format : formato en el cual sera salvado un file
1291 set : el setebo del file
1291 set : el setebo del file
1292
1292
1293 Return:
1293 Return:
1294 0 : Si no realizo un buen seteo
1294 0 : Si no realizo un buen seteo
1295 1 : Si realizo un buen seteo
1295 1 : Si realizo un buen seteo
1296 """
1296 """
1297
1297
1298 if ext == None:
1298 if ext == None:
1299 ext = self.ext
1299 ext = self.ext
1300
1300
1301 ext = ext.lower()
1301 ext = ext.lower()
1302
1302
1303 self.ext = ext
1303 self.ext = ext
1304
1304
1305 self.path = path
1305 self.path = path
1306
1306
1307 self.setFile = set - 1
1307 self.setFile = set - 1
1308
1308
1309 self.blocksPerFile = blocksPerFile
1309 self.blocksPerFile = blocksPerFile
1310
1310
1311 self.profilesPerBlock = profilesPerBlock
1311 self.profilesPerBlock = profilesPerBlock
1312
1312
1313 self.dataOut = dataOut
1313 self.dataOut = dataOut
1314
1314
1315 if not(self.setNextFile()):
1315 if not(self.setNextFile()):
1316 print "There isn't a next file"
1316 print "There isn't a next file"
1317 return 0
1317 return 0
1318
1318
1319 self.setBlockDimension()
1319 self.setBlockDimension()
1320
1320
1321 return 1
1321 return 1
1322
1322
1323 def run(self, dataOut, **kwargs):
1323 def run(self, dataOut, **kwargs):
1324
1324
1325 if not(self.isConfig):
1325 if not(self.isConfig):
1326
1326
1327 self.setup(dataOut, **kwargs)
1327 self.setup(dataOut, **kwargs)
1328 self.isConfig = True
1328 self.isConfig = True
1329
1329
1330 self.putData()
1330 self.putData()
1331
1331
1332 class VoltageReader(JRODataReader):
1332 class VoltageReader(JRODataReader):
1333 """
1333 """
1334 Esta clase permite leer datos de voltage desde archivos en formato rawdata (.r). La lectura
1334 Esta clase permite leer datos de voltage desde archivos en formato rawdata (.r). La lectura
1335 de los datos siempre se realiza por bloques. Los datos leidos (array de 3 dimensiones:
1335 de los datos siempre se realiza por bloques. Los datos leidos (array de 3 dimensiones:
1336 perfiles*alturas*canales) son almacenados en la variable "buffer".
1336 perfiles*alturas*canales) son almacenados en la variable "buffer".
1337
1337
1338 perfiles * alturas * canales
1338 perfiles * alturas * canales
1339
1339
1340 Esta clase contiene instancias (objetos) de las clases BasicHeader, SystemHeader,
1340 Esta clase contiene instancias (objetos) de las clases BasicHeader, SystemHeader,
1341 RadarControllerHeader y Voltage. Los tres primeros se usan para almacenar informacion de la
1341 RadarControllerHeader y Voltage. Los tres primeros se usan para almacenar informacion de la
1342 cabecera de datos (metadata), y el cuarto (Voltage) para obtener y almacenar un perfil de
1342 cabecera de datos (metadata), y el cuarto (Voltage) para obtener y almacenar un perfil de
1343 datos desde el "buffer" cada vez que se ejecute el metodo "getData".
1343 datos desde el "buffer" cada vez que se ejecute el metodo "getData".
1344
1344
1345 Example:
1345 Example:
1346
1346
1347 dpath = "/home/myuser/data"
1347 dpath = "/home/myuser/data"
1348
1348
1349 startTime = datetime.datetime(2010,1,20,0,0,0,0,0,0)
1349 startTime = datetime.datetime(2010,1,20,0,0,0,0,0,0)
1350
1350
1351 endTime = datetime.datetime(2010,1,21,23,59,59,0,0,0)
1351 endTime = datetime.datetime(2010,1,21,23,59,59,0,0,0)
1352
1352
1353 readerObj = VoltageReader()
1353 readerObj = VoltageReader()
1354
1354
1355 readerObj.setup(dpath, startTime, endTime)
1355 readerObj.setup(dpath, startTime, endTime)
1356
1356
1357 while(True):
1357 while(True):
1358
1358
1359 #to get one profile
1359 #to get one profile
1360 profile = readerObj.getData()
1360 profile = readerObj.getData()
1361
1361
1362 #print the profile
1362 #print the profile
1363 print profile
1363 print profile
1364
1364
1365 #If you want to see all datablock
1365 #If you want to see all datablock
1366 print readerObj.datablock
1366 print readerObj.datablock
1367
1367
1368 if readerObj.flagNoMoreFiles:
1368 if readerObj.flagNoMoreFiles:
1369 break
1369 break
1370
1370
1371 """
1371 """
1372
1372
1373 ext = ".r"
1373 ext = ".r"
1374
1374
1375 optchar = "D"
1375 optchar = "D"
1376 dataOut = None
1376 dataOut = None
1377
1377
1378
1378
1379 def __init__(self):
1379 def __init__(self):
1380 """
1380 """
1381 Inicializador de la clase VoltageReader para la lectura de datos de voltage.
1381 Inicializador de la clase VoltageReader para la lectura de datos de voltage.
1382
1382
1383 Input:
1383 Input:
1384 dataOut : Objeto de la clase Voltage. Este objeto sera utilizado para
1384 dataOut : Objeto de la clase Voltage. Este objeto sera utilizado para
1385 almacenar un perfil de datos cada vez que se haga un requerimiento
1385 almacenar un perfil de datos cada vez que se haga un requerimiento
1386 (getData). El perfil sera obtenido a partir del buffer de datos,
1386 (getData). El perfil sera obtenido a partir del buffer de datos,
1387 si el buffer esta vacio se hara un nuevo proceso de lectura de un
1387 si el buffer esta vacio se hara un nuevo proceso de lectura de un
1388 bloque de datos.
1388 bloque de datos.
1389 Si este parametro no es pasado se creara uno internamente.
1389 Si este parametro no es pasado se creara uno internamente.
1390
1390
1391 Variables afectadas:
1391 Variables afectadas:
1392 self.dataOut
1392 self.dataOut
1393
1393
1394 Return:
1394 Return:
1395 None
1395 None
1396 """
1396 """
1397
1397
1398 self.isConfig = False
1398 self.isConfig = False
1399
1399
1400 self.datablock = None
1400 self.datablock = None
1401
1401
1402 self.utc = 0
1402 self.utc = 0
1403
1403
1404 self.ext = ".r"
1404 self.ext = ".r"
1405
1405
1406 self.optchar = "D"
1406 self.optchar = "D"
1407
1407
1408 self.basicHeaderObj = BasicHeader(LOCALTIME)
1408 self.basicHeaderObj = BasicHeader(LOCALTIME)
1409
1409
1410 self.systemHeaderObj = SystemHeader()
1410 self.systemHeaderObj = SystemHeader()
1411
1411
1412 self.radarControllerHeaderObj = RadarControllerHeader()
1412 self.radarControllerHeaderObj = RadarControllerHeader()
1413
1413
1414 self.processingHeaderObj = ProcessingHeader()
1414 self.processingHeaderObj = ProcessingHeader()
1415
1415
1416 self.online = 0
1416 self.online = 0
1417
1417
1418 self.fp = None
1418 self.fp = None
1419
1419
1420 self.idFile = None
1420 self.idFile = None
1421
1421
1422 self.dtype = None
1422 self.dtype = None
1423
1423
1424 self.fileSizeByHeader = None
1424 self.fileSizeByHeader = None
1425
1425
1426 self.filenameList = []
1426 self.filenameList = []
1427
1427
1428 self.filename = None
1428 self.filename = None
1429
1429
1430 self.fileSize = None
1430 self.fileSize = None
1431
1431
1432 self.firstHeaderSize = 0
1432 self.firstHeaderSize = 0
1433
1433
1434 self.basicHeaderSize = 24
1434 self.basicHeaderSize = 24
1435
1435
1436 self.pathList = []
1436 self.pathList = []
1437
1437
1438 self.filenameList = []
1438 self.filenameList = []
1439
1439
1440 self.lastUTTime = 0
1440 self.lastUTTime = 0
1441
1441
1442 self.maxTimeStep = 30
1442 self.maxTimeStep = 30
1443
1443
1444 self.flagNoMoreFiles = 0
1444 self.flagNoMoreFiles = 0
1445
1445
1446 self.set = 0
1446 self.set = 0
1447
1447
1448 self.path = None
1448 self.path = None
1449
1449
1450 self.profileIndex = 2**32-1
1450 self.profileIndex = 2**32-1
1451
1451
1452 self.delay = 3 #seconds
1452 self.delay = 3 #seconds
1453
1453
1454 self.nTries = 3 #quantity tries
1454 self.nTries = 3 #quantity tries
1455
1455
1456 self.nFiles = 3 #number of files for searching
1456 self.nFiles = 3 #number of files for searching
1457
1457
1458 self.nReadBlocks = 0
1458 self.nReadBlocks = 0
1459
1459
1460 self.flagIsNewFile = 1
1460 self.flagIsNewFile = 1
1461
1461
1462 self.__isFirstTimeOnline = 1
1462 self.__isFirstTimeOnline = 1
1463
1463
1464 self.ippSeconds = 0
1464 self.ippSeconds = 0
1465
1465
1466 self.flagTimeBlock = 0
1466 self.flagTimeBlock = 0
1467
1467
1468 self.flagIsNewBlock = 0
1468 self.flagIsNewBlock = 0
1469
1469
1470 self.nTotalBlocks = 0
1470 self.nTotalBlocks = 0
1471
1471
1472 self.blocksize = 0
1472 self.blocksize = 0
1473
1473
1474 self.dataOut = self.createObjByDefault()
1474 self.dataOut = self.createObjByDefault()
1475
1475
1476 def createObjByDefault(self):
1476 def createObjByDefault(self):
1477
1477
1478 dataObj = Voltage()
1478 dataObj = Voltage()
1479
1479
1480 return dataObj
1480 return dataObj
1481
1481
1482 def __hasNotDataInBuffer(self):
1482 def __hasNotDataInBuffer(self):
1483 if self.profileIndex >= self.processingHeaderObj.profilesPerBlock:
1483 if self.profileIndex >= self.processingHeaderObj.profilesPerBlock:
1484 return 1
1484 return 1
1485 return 0
1485 return 0
1486
1486
1487
1487
1488 def getBlockDimension(self):
1488 def getBlockDimension(self):
1489 """
1489 """
1490 Obtiene la cantidad de puntos a leer por cada bloque de datos
1490 Obtiene la cantidad de puntos a leer por cada bloque de datos
1491
1491
1492 Affected:
1492 Affected:
1493 self.blocksize
1493 self.blocksize
1494
1494
1495 Return:
1495 Return:
1496 None
1496 None
1497 """
1497 """
1498 pts2read = self.processingHeaderObj.profilesPerBlock * self.processingHeaderObj.nHeights * self.systemHeaderObj.nChannels
1498 pts2read = self.processingHeaderObj.profilesPerBlock * self.processingHeaderObj.nHeights * self.systemHeaderObj.nChannels
1499 self.blocksize = pts2read
1499 self.blocksize = pts2read
1500
1500
1501
1501
1502 def readBlock(self):
1502 def readBlock(self):
1503 """
1503 """
1504 readBlock lee el bloque de datos desde la posicion actual del puntero del archivo
1504 readBlock lee el bloque de datos desde la posicion actual del puntero del archivo
1505 (self.fp) y actualiza todos los parametros relacionados al bloque de datos
1505 (self.fp) y actualiza todos los parametros relacionados al bloque de datos
1506 (metadata + data). La data leida es almacenada en el buffer y el contador del buffer
1506 (metadata + data). La data leida es almacenada en el buffer y el contador del buffer
1507 es seteado a 0
1507 es seteado a 0
1508
1508
1509 Inputs:
1509 Inputs:
1510 None
1510 None
1511
1511
1512 Return:
1512 Return:
1513 None
1513 None
1514
1514
1515 Affected:
1515 Affected:
1516 self.profileIndex
1516 self.profileIndex
1517 self.datablock
1517 self.datablock
1518 self.flagIsNewFile
1518 self.flagIsNewFile
1519 self.flagIsNewBlock
1519 self.flagIsNewBlock
1520 self.nTotalBlocks
1520 self.nTotalBlocks
1521
1521
1522 Exceptions:
1522 Exceptions:
1523 Si un bloque leido no es un bloque valido
1523 Si un bloque leido no es un bloque valido
1524 """
1524 """
1525 current_pointer_location = self.fp.tell()
1525 current_pointer_location = self.fp.tell()
1526 junk = numpy.fromfile( self.fp, self.dtype, self.blocksize )
1526 junk = numpy.fromfile( self.fp, self.dtype, self.blocksize )
1527
1527
1528 try:
1528 try:
1529 junk = junk.reshape( (self.processingHeaderObj.profilesPerBlock, self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels) )
1529 junk = junk.reshape( (self.processingHeaderObj.profilesPerBlock, self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels) )
1530 except:
1530 except:
1531 #print "The read block (%3d) has not enough data" %self.nReadBlocks
1531 #print "The read block (%3d) has not enough data" %self.nReadBlocks
1532
1532
1533 if self.waitDataBlock(pointer_location=current_pointer_location):
1533 if self.waitDataBlock(pointer_location=current_pointer_location):
1534 junk = numpy.fromfile( self.fp, self.dtype, self.blocksize )
1534 junk = numpy.fromfile( self.fp, self.dtype, self.blocksize )
1535 junk = junk.reshape( (self.processingHeaderObj.profilesPerBlock, self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels) )
1535 junk = junk.reshape( (self.processingHeaderObj.profilesPerBlock, self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels) )
1536 # return 0
1536 # return 0
1537
1537
1538 junk = numpy.transpose(junk, (2,0,1))
1538 junk = numpy.transpose(junk, (2,0,1))
1539 self.datablock = junk['real'] + junk['imag']*1j
1539 self.datablock = junk['real'] + junk['imag']*1j
1540
1540
1541 self.profileIndex = 0
1541 self.profileIndex = 0
1542
1542
1543 self.flagIsNewFile = 0
1543 self.flagIsNewFile = 0
1544 self.flagIsNewBlock = 1
1544 self.flagIsNewBlock = 1
1545
1545
1546 self.nTotalBlocks += 1
1546 self.nTotalBlocks += 1
1547 self.nReadBlocks += 1
1547 self.nReadBlocks += 1
1548
1548
1549 return 1
1549 return 1
1550
1550
1551 def getFirstHeader(self):
1551 def getFirstHeader(self):
1552
1552
1553 self.dataOut.dtype = self.dtype
1553 self.dataOut.dtype = self.dtype
1554
1554
1555 self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock
1555 self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock
1556
1556
1557 xf = self.processingHeaderObj.firstHeight + self.processingHeaderObj.nHeights*self.processingHeaderObj.deltaHeight
1557 xf = self.processingHeaderObj.firstHeight + self.processingHeaderObj.nHeights*self.processingHeaderObj.deltaHeight
1558
1558
1559 self.dataOut.heightList = numpy.arange(self.processingHeaderObj.firstHeight, xf, self.processingHeaderObj.deltaHeight)
1559 self.dataOut.heightList = numpy.arange(self.processingHeaderObj.firstHeight, xf, self.processingHeaderObj.deltaHeight)
1560
1560
1561 self.dataOut.channelList = range(self.systemHeaderObj.nChannels)
1561 self.dataOut.channelList = range(self.systemHeaderObj.nChannels)
1562
1562
1563 self.dataOut.ippSeconds = self.ippSeconds
1563 self.dataOut.ippSeconds = self.ippSeconds
1564
1564
1565 self.dataOut.timeInterval = self.ippSeconds * self.processingHeaderObj.nCohInt
1565 self.dataOut.timeInterval = self.ippSeconds * self.processingHeaderObj.nCohInt
1566
1566
1567 self.dataOut.nCohInt = self.processingHeaderObj.nCohInt
1567 self.dataOut.nCohInt = self.processingHeaderObj.nCohInt
1568
1568
1569 self.dataOut.flagShiftFFT = False
1569 self.dataOut.flagShiftFFT = False
1570
1570
1571 if self.radarControllerHeaderObj.code != None:
1571 if self.radarControllerHeaderObj.code != None:
1572
1572
1573 self.dataOut.nCode = self.radarControllerHeaderObj.nCode
1573 self.dataOut.nCode = self.radarControllerHeaderObj.nCode
1574
1574
1575 self.dataOut.nBaud = self.radarControllerHeaderObj.nBaud
1575 self.dataOut.nBaud = self.radarControllerHeaderObj.nBaud
1576
1576
1577 self.dataOut.code = self.radarControllerHeaderObj.code
1577 self.dataOut.code = self.radarControllerHeaderObj.code
1578
1578
1579 self.dataOut.systemHeaderObj = self.systemHeaderObj.copy()
1579 self.dataOut.systemHeaderObj = self.systemHeaderObj.copy()
1580
1580
1581 self.dataOut.radarControllerHeaderObj = self.radarControllerHeaderObj.copy()
1581 self.dataOut.radarControllerHeaderObj = self.radarControllerHeaderObj.copy()
1582
1582
1583 self.dataOut.flagDecodeData = False #asumo q la data no esta decodificada
1583 self.dataOut.flagDecodeData = False #asumo q la data no esta decodificada
1584
1584
1585 self.dataOut.flagDeflipData = False #asumo q la data no esta sin flip
1585 self.dataOut.flagDeflipData = False #asumo q la data no esta sin flip
1586
1586
1587 self.dataOut.flagShiftFFT = False
1587 self.dataOut.flagShiftFFT = False
1588
1588
1589 def getData(self):
1589 def getData(self):
1590 """
1590 """
1591 getData obtiene una unidad de datos del buffer de lectura y la copia a la clase "Voltage"
1591 getData obtiene una unidad de datos del buffer de lectura y la copia a la clase "Voltage"
1592 con todos los parametros asociados a este (metadata). cuando no hay datos en el buffer de
1592 con todos los parametros asociados a este (metadata). cuando no hay datos en el buffer de
1593 lectura es necesario hacer una nueva lectura de los bloques de datos usando "readNextBlock"
1593 lectura es necesario hacer una nueva lectura de los bloques de datos usando "readNextBlock"
1594
1594
1595 Ademas incrementa el contador del buffer en 1.
1595 Ademas incrementa el contador del buffer en 1.
1596
1596
1597 Return:
1597 Return:
1598 data : retorna un perfil de voltages (alturas * canales) copiados desde el
1598 data : retorna un perfil de voltages (alturas * canales) copiados desde el
1599 buffer. Si no hay mas archivos a leer retorna None.
1599 buffer. Si no hay mas archivos a leer retorna None.
1600
1600
1601 Variables afectadas:
1601 Variables afectadas:
1602 self.dataOut
1602 self.dataOut
1603 self.profileIndex
1603 self.profileIndex
1604
1604
1605 Affected:
1605 Affected:
1606 self.dataOut
1606 self.dataOut
1607 self.profileIndex
1607 self.profileIndex
1608 self.flagTimeBlock
1608 self.flagTimeBlock
1609 self.flagIsNewBlock
1609 self.flagIsNewBlock
1610 """
1610 """
1611
1611
1612 if self.flagNoMoreFiles:
1612 if self.flagNoMoreFiles:
1613 self.dataOut.flagNoData = True
1613 self.dataOut.flagNoData = True
1614 print 'Process finished'
1614 print 'Process finished'
1615 return 0
1615 return 0
1616
1616
1617 self.flagTimeBlock = 0
1617 self.flagTimeBlock = 0
1618 self.flagIsNewBlock = 0
1618 self.flagIsNewBlock = 0
1619
1619
1620 if self.__hasNotDataInBuffer():
1620 if self.__hasNotDataInBuffer():
1621
1621
1622 if not( self.readNextBlock() ):
1622 if not( self.readNextBlock() ):
1623 return 0
1623 return 0
1624
1624
1625 self.getFirstHeader()
1625 self.getFirstHeader()
1626
1626
1627 if self.datablock == None:
1627 if self.datablock == None:
1628 self.dataOut.flagNoData = True
1628 self.dataOut.flagNoData = True
1629 return 0
1629 return 0
1630
1630
1631 self.dataOut.data = self.datablock[:,self.profileIndex,:]
1631 self.dataOut.data = self.datablock[:,self.profileIndex,:]
1632
1632
1633 self.dataOut.flagNoData = False
1633 self.dataOut.flagNoData = False
1634
1634
1635 self.getBasicHeader()
1635 self.getBasicHeader()
1636
1636
1637 self.profileIndex += 1
1637 self.profileIndex += 1
1638
1638
1639 self.dataOut.realtime = self.online
1639 self.dataOut.realtime = self.online
1640
1640
1641 return self.dataOut.data
1641 return self.dataOut.data
1642
1642
1643
1643
1644 class VoltageWriter(JRODataWriter):
1644 class VoltageWriter(JRODataWriter):
1645 """
1645 """
1646 Esta clase permite escribir datos de voltajes a archivos procesados (.r). La escritura
1646 Esta clase permite escribir datos de voltajes a archivos procesados (.r). La escritura
1647 de los datos siempre se realiza por bloques.
1647 de los datos siempre se realiza por bloques.
1648 """
1648 """
1649
1649
1650 ext = ".r"
1650 ext = ".r"
1651
1651
1652 optchar = "D"
1652 optchar = "D"
1653
1653
1654 shapeBuffer = None
1654 shapeBuffer = None
1655
1655
1656
1656
1657 def __init__(self):
1657 def __init__(self):
1658 """
1658 """
1659 Inicializador de la clase VoltageWriter para la escritura de datos de espectros.
1659 Inicializador de la clase VoltageWriter para la escritura de datos de espectros.
1660
1660
1661 Affected:
1661 Affected:
1662 self.dataOut
1662 self.dataOut
1663
1663
1664 Return: None
1664 Return: None
1665 """
1665 """
1666
1666
1667 self.nTotalBlocks = 0
1667 self.nTotalBlocks = 0
1668
1668
1669 self.profileIndex = 0
1669 self.profileIndex = 0
1670
1670
1671 self.isConfig = False
1671 self.isConfig = False
1672
1672
1673 self.fp = None
1673 self.fp = None
1674
1674
1675 self.flagIsNewFile = 1
1675 self.flagIsNewFile = 1
1676
1676
1677 self.nTotalBlocks = 0
1677 self.nTotalBlocks = 0
1678
1678
1679 self.flagIsNewBlock = 0
1679 self.flagIsNewBlock = 0
1680
1680
1681 self.setFile = None
1681 self.setFile = None
1682
1682
1683 self.dtype = None
1683 self.dtype = None
1684
1684
1685 self.path = None
1685 self.path = None
1686
1686
1687 self.filename = None
1687 self.filename = None
1688
1688
1689 self.basicHeaderObj = BasicHeader(LOCALTIME)
1689 self.basicHeaderObj = BasicHeader(LOCALTIME)
1690
1690
1691 self.systemHeaderObj = SystemHeader()
1691 self.systemHeaderObj = SystemHeader()
1692
1692
1693 self.radarControllerHeaderObj = RadarControllerHeader()
1693 self.radarControllerHeaderObj = RadarControllerHeader()
1694
1694
1695 self.processingHeaderObj = ProcessingHeader()
1695 self.processingHeaderObj = ProcessingHeader()
1696
1696
1697 def hasAllDataInBuffer(self):
1697 def hasAllDataInBuffer(self):
1698 if self.profileIndex >= self.processingHeaderObj.profilesPerBlock:
1698 if self.profileIndex >= self.processingHeaderObj.profilesPerBlock:
1699 return 1
1699 return 1
1700 return 0
1700 return 0
1701
1701
1702
1702
1703 def setBlockDimension(self):
1703 def setBlockDimension(self):
1704 """
1704 """
1705 Obtiene las formas dimensionales del los subbloques de datos que componen un bloque
1705 Obtiene las formas dimensionales del los subbloques de datos que componen un bloque
1706
1706
1707 Affected:
1707 Affected:
1708 self.shape_spc_Buffer
1708 self.shape_spc_Buffer
1709 self.shape_cspc_Buffer
1709 self.shape_cspc_Buffer
1710 self.shape_dc_Buffer
1710 self.shape_dc_Buffer
1711
1711
1712 Return: None
1712 Return: None
1713 """
1713 """
1714 self.shapeBuffer = (self.processingHeaderObj.profilesPerBlock,
1714 self.shapeBuffer = (self.processingHeaderObj.profilesPerBlock,
1715 self.processingHeaderObj.nHeights,
1715 self.processingHeaderObj.nHeights,
1716 self.systemHeaderObj.nChannels)
1716 self.systemHeaderObj.nChannels)
1717
1717
1718 self.datablock = numpy.zeros((self.systemHeaderObj.nChannels,
1718 self.datablock = numpy.zeros((self.systemHeaderObj.nChannels,
1719 self.processingHeaderObj.profilesPerBlock,
1719 self.processingHeaderObj.profilesPerBlock,
1720 self.processingHeaderObj.nHeights),
1720 self.processingHeaderObj.nHeights),
1721 dtype=numpy.dtype('complex64'))
1721 dtype=numpy.dtype('complex64'))
1722
1722
1723
1723
1724 def writeBlock(self):
1724 def writeBlock(self):
1725 """
1725 """
1726 Escribe el buffer en el file designado
1726 Escribe el buffer en el file designado
1727
1727
1728 Affected:
1728 Affected:
1729 self.profileIndex
1729 self.profileIndex
1730 self.flagIsNewFile
1730 self.flagIsNewFile
1731 self.flagIsNewBlock
1731 self.flagIsNewBlock
1732 self.nTotalBlocks
1732 self.nTotalBlocks
1733 self.blockIndex
1733 self.blockIndex
1734
1734
1735 Return: None
1735 Return: None
1736 """
1736 """
1737 data = numpy.zeros( self.shapeBuffer, self.dtype )
1737 data = numpy.zeros( self.shapeBuffer, self.dtype )
1738
1738
1739 junk = numpy.transpose(self.datablock, (1,2,0))
1739 junk = numpy.transpose(self.datablock, (1,2,0))
1740
1740
1741 data['real'] = junk.real
1741 data['real'] = junk.real
1742 data['imag'] = junk.imag
1742 data['imag'] = junk.imag
1743
1743
1744 data = data.reshape( (-1) )
1744 data = data.reshape( (-1) )
1745
1745
1746 data.tofile( self.fp )
1746 data.tofile( self.fp )
1747
1747
1748 self.datablock.fill(0)
1748 self.datablock.fill(0)
1749
1749
1750 self.profileIndex = 0
1750 self.profileIndex = 0
1751 self.flagIsNewFile = 0
1751 self.flagIsNewFile = 0
1752 self.flagIsNewBlock = 1
1752 self.flagIsNewBlock = 1
1753
1753
1754 self.blockIndex += 1
1754 self.blockIndex += 1
1755 self.nTotalBlocks += 1
1755 self.nTotalBlocks += 1
1756
1756
1757 def putData(self):
1757 def putData(self):
1758 """
1758 """
1759 Setea un bloque de datos y luego los escribe en un file
1759 Setea un bloque de datos y luego los escribe en un file
1760
1760
1761 Affected:
1761 Affected:
1762 self.flagIsNewBlock
1762 self.flagIsNewBlock
1763 self.profileIndex
1763 self.profileIndex
1764
1764
1765 Return:
1765 Return:
1766 0 : Si no hay data o no hay mas files que puedan escribirse
1766 0 : Si no hay data o no hay mas files que puedan escribirse
1767 1 : Si se escribio la data de un bloque en un file
1767 1 : Si se escribio la data de un bloque en un file
1768 """
1768 """
1769 if self.dataOut.flagNoData:
1769 if self.dataOut.flagNoData:
1770 return 0
1770 return 0
1771
1771
1772 self.flagIsNewBlock = 0
1772 self.flagIsNewBlock = 0
1773
1773
1774 if self.dataOut.flagTimeBlock:
1774 if self.dataOut.flagTimeBlock:
1775
1775
1776 self.datablock.fill(0)
1776 self.datablock.fill(0)
1777 self.profileIndex = 0
1777 self.profileIndex = 0
1778 self.setNextFile()
1778 self.setNextFile()
1779
1779
1780 if self.profileIndex == 0:
1780 if self.profileIndex == 0:
1781 self.setBasicHeader()
1781 self.setBasicHeader()
1782
1782
1783 self.datablock[:,self.profileIndex,:] = self.dataOut.data
1783 self.datablock[:,self.profileIndex,:] = self.dataOut.data
1784
1784
1785 self.profileIndex += 1
1785 self.profileIndex += 1
1786
1786
1787 if self.hasAllDataInBuffer():
1787 if self.hasAllDataInBuffer():
1788 #if self.flagIsNewFile:
1788 #if self.flagIsNewFile:
1789 self.writeNextBlock()
1789 self.writeNextBlock()
1790 # self.setFirstHeader()
1790 # self.setFirstHeader()
1791
1791
1792 return 1
1792 return 1
1793
1793
1794 def __getProcessFlags(self):
1794 def __getProcessFlags(self):
1795
1795
1796 processFlags = 0
1796 processFlags = 0
1797
1797
1798 dtype0 = numpy.dtype([('real','<i1'),('imag','<i1')])
1798 dtype0 = numpy.dtype([('real','<i1'),('imag','<i1')])
1799 dtype1 = numpy.dtype([('real','<i2'),('imag','<i2')])
1799 dtype1 = numpy.dtype([('real','<i2'),('imag','<i2')])
1800 dtype2 = numpy.dtype([('real','<i4'),('imag','<i4')])
1800 dtype2 = numpy.dtype([('real','<i4'),('imag','<i4')])
1801 dtype3 = numpy.dtype([('real','<i8'),('imag','<i8')])
1801 dtype3 = numpy.dtype([('real','<i8'),('imag','<i8')])
1802 dtype4 = numpy.dtype([('real','<f4'),('imag','<f4')])
1802 dtype4 = numpy.dtype([('real','<f4'),('imag','<f4')])
1803 dtype5 = numpy.dtype([('real','<f8'),('imag','<f8')])
1803 dtype5 = numpy.dtype([('real','<f8'),('imag','<f8')])
1804
1804
1805 dtypeList = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5]
1805 dtypeList = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5]
1806
1806
1807
1807
1808
1808
1809 datatypeValueList = [PROCFLAG.DATATYPE_CHAR,
1809 datatypeValueList = [PROCFLAG.DATATYPE_CHAR,
1810 PROCFLAG.DATATYPE_SHORT,
1810 PROCFLAG.DATATYPE_SHORT,
1811 PROCFLAG.DATATYPE_LONG,
1811 PROCFLAG.DATATYPE_LONG,
1812 PROCFLAG.DATATYPE_INT64,
1812 PROCFLAG.DATATYPE_INT64,
1813 PROCFLAG.DATATYPE_FLOAT,
1813 PROCFLAG.DATATYPE_FLOAT,
1814 PROCFLAG.DATATYPE_DOUBLE]
1814 PROCFLAG.DATATYPE_DOUBLE]
1815
1815
1816
1816
1817 for index in range(len(dtypeList)):
1817 for index in range(len(dtypeList)):
1818 if self.dataOut.dtype == dtypeList[index]:
1818 if self.dataOut.dtype == dtypeList[index]:
1819 dtypeValue = datatypeValueList[index]
1819 dtypeValue = datatypeValueList[index]
1820 break
1820 break
1821
1821
1822 processFlags += dtypeValue
1822 processFlags += dtypeValue
1823
1823
1824 if self.dataOut.flagDecodeData:
1824 if self.dataOut.flagDecodeData:
1825 processFlags += PROCFLAG.DECODE_DATA
1825 processFlags += PROCFLAG.DECODE_DATA
1826
1826
1827 if self.dataOut.flagDeflipData:
1827 if self.dataOut.flagDeflipData:
1828 processFlags += PROCFLAG.DEFLIP_DATA
1828 processFlags += PROCFLAG.DEFLIP_DATA
1829
1829
1830 if self.dataOut.code != None:
1830 if self.dataOut.code != None:
1831 processFlags += PROCFLAG.DEFINE_PROCESS_CODE
1831 processFlags += PROCFLAG.DEFINE_PROCESS_CODE
1832
1832
1833 if self.dataOut.nCohInt > 1:
1833 if self.dataOut.nCohInt > 1:
1834 processFlags += PROCFLAG.COHERENT_INTEGRATION
1834 processFlags += PROCFLAG.COHERENT_INTEGRATION
1835
1835
1836 return processFlags
1836 return processFlags
1837
1837
1838
1838
1839 def __getBlockSize(self):
1839 def __getBlockSize(self):
1840 '''
1840 '''
1841 Este metodos determina el cantidad de bytes para un bloque de datos de tipo Voltage
1841 Este metodos determina el cantidad de bytes para un bloque de datos de tipo Voltage
1842 '''
1842 '''
1843
1843
1844 dtype0 = numpy.dtype([('real','<i1'),('imag','<i1')])
1844 dtype0 = numpy.dtype([('real','<i1'),('imag','<i1')])
1845 dtype1 = numpy.dtype([('real','<i2'),('imag','<i2')])
1845 dtype1 = numpy.dtype([('real','<i2'),('imag','<i2')])
1846 dtype2 = numpy.dtype([('real','<i4'),('imag','<i4')])
1846 dtype2 = numpy.dtype([('real','<i4'),('imag','<i4')])
1847 dtype3 = numpy.dtype([('real','<i8'),('imag','<i8')])
1847 dtype3 = numpy.dtype([('real','<i8'),('imag','<i8')])
1848 dtype4 = numpy.dtype([('real','<f4'),('imag','<f4')])
1848 dtype4 = numpy.dtype([('real','<f4'),('imag','<f4')])
1849 dtype5 = numpy.dtype([('real','<f8'),('imag','<f8')])
1849 dtype5 = numpy.dtype([('real','<f8'),('imag','<f8')])
1850
1850
1851 dtypeList = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5]
1851 dtypeList = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5]
1852 datatypeValueList = [1,2,4,8,4,8]
1852 datatypeValueList = [1,2,4,8,4,8]
1853 for index in range(len(dtypeList)):
1853 for index in range(len(dtypeList)):
1854 if self.dataOut.dtype == dtypeList[index]:
1854 if self.dataOut.dtype == dtypeList[index]:
1855 datatypeValue = datatypeValueList[index]
1855 datatypeValue = datatypeValueList[index]
1856 break
1856 break
1857
1857
1858 blocksize = int(self.dataOut.nHeights * self.dataOut.nChannels * self.profilesPerBlock * datatypeValue * 2)
1858 blocksize = int(self.dataOut.nHeights * self.dataOut.nChannels * self.profilesPerBlock * datatypeValue * 2)
1859
1859
1860 return blocksize
1860 return blocksize
1861
1861
1862 def setFirstHeader(self):
1862 def setFirstHeader(self):
1863
1863
1864 """
1864 """
1865 Obtiene una copia del First Header
1865 Obtiene una copia del First Header
1866
1866
1867 Affected:
1867 Affected:
1868 self.systemHeaderObj
1868 self.systemHeaderObj
1869 self.radarControllerHeaderObj
1869 self.radarControllerHeaderObj
1870 self.dtype
1870 self.dtype
1871
1871
1872 Return:
1872 Return:
1873 None
1873 None
1874 """
1874 """
1875
1875
1876 self.systemHeaderObj = self.dataOut.systemHeaderObj.copy()
1876 self.systemHeaderObj = self.dataOut.systemHeaderObj.copy()
1877 self.systemHeaderObj.nChannels = self.dataOut.nChannels
1877 self.systemHeaderObj.nChannels = self.dataOut.nChannels
1878 self.radarControllerHeaderObj = self.dataOut.radarControllerHeaderObj.copy()
1878 self.radarControllerHeaderObj = self.dataOut.radarControllerHeaderObj.copy()
1879
1879
1880 self.setBasicHeader()
1880 self.setBasicHeader()
1881
1881
1882 processingHeaderSize = 40 # bytes
1882 processingHeaderSize = 40 # bytes
1883 self.processingHeaderObj.dtype = 0 # Voltage
1883 self.processingHeaderObj.dtype = 0 # Voltage
1884 self.processingHeaderObj.blockSize = self.__getBlockSize()
1884 self.processingHeaderObj.blockSize = self.__getBlockSize()
1885 self.processingHeaderObj.profilesPerBlock = self.profilesPerBlock
1885 self.processingHeaderObj.profilesPerBlock = self.profilesPerBlock
1886 self.processingHeaderObj.dataBlocksPerFile = self.blocksPerFile
1886 self.processingHeaderObj.dataBlocksPerFile = self.blocksPerFile
1887 self.processingHeaderObj.nWindows = 1 #podria ser 1 o self.dataOut.processingHeaderObj.nWindows
1887 self.processingHeaderObj.nWindows = 1 #podria ser 1 o self.dataOut.processingHeaderObj.nWindows
1888 self.processingHeaderObj.processFlags = self.__getProcessFlags()
1888 self.processingHeaderObj.processFlags = self.__getProcessFlags()
1889 self.processingHeaderObj.nCohInt = self.dataOut.nCohInt
1889 self.processingHeaderObj.nCohInt = self.dataOut.nCohInt
1890 self.processingHeaderObj.nIncohInt = 1 # Cuando la data de origen es de tipo Voltage
1890 self.processingHeaderObj.nIncohInt = 1 # Cuando la data de origen es de tipo Voltage
1891 self.processingHeaderObj.totalSpectra = 0 # Cuando la data de origen es de tipo Voltage
1891 self.processingHeaderObj.totalSpectra = 0 # Cuando la data de origen es de tipo Voltage
1892
1892
1893 # if self.dataOut.code != None:
1893 # if self.dataOut.code != None:
1894 # self.processingHeaderObj.code = self.dataOut.code
1894 # self.processingHeaderObj.code = self.dataOut.code
1895 # self.processingHeaderObj.nCode = self.dataOut.nCode
1895 # self.processingHeaderObj.nCode = self.dataOut.nCode
1896 # self.processingHeaderObj.nBaud = self.dataOut.nBaud
1896 # self.processingHeaderObj.nBaud = self.dataOut.nBaud
1897 # codesize = int(8 + 4 * self.dataOut.nCode * self.dataOut.nBaud)
1897 # codesize = int(8 + 4 * self.dataOut.nCode * self.dataOut.nBaud)
1898 # processingHeaderSize += codesize
1898 # processingHeaderSize += codesize
1899
1899
1900 if self.processingHeaderObj.nWindows != 0:
1900 if self.processingHeaderObj.nWindows != 0:
1901 self.processingHeaderObj.firstHeight = self.dataOut.heightList[0]
1901 self.processingHeaderObj.firstHeight = self.dataOut.heightList[0]
1902 self.processingHeaderObj.deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
1902 self.processingHeaderObj.deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
1903 self.processingHeaderObj.nHeights = self.dataOut.nHeights
1903 self.processingHeaderObj.nHeights = self.dataOut.nHeights
1904 self.processingHeaderObj.samplesWin = self.dataOut.nHeights
1904 self.processingHeaderObj.samplesWin = self.dataOut.nHeights
1905 processingHeaderSize += 12
1905 processingHeaderSize += 12
1906
1906
1907 self.processingHeaderObj.size = processingHeaderSize
1907 self.processingHeaderObj.size = processingHeaderSize
1908
1908
1909 class SpectraReader(JRODataReader):
1909 class SpectraReader(JRODataReader):
1910 """
1910 """
1911 Esta clase permite leer datos de espectros desde archivos procesados (.pdata). La lectura
1911 Esta clase permite leer datos de espectros desde archivos procesados (.pdata). La lectura
1912 de los datos siempre se realiza por bloques. Los datos leidos (array de 3 dimensiones)
1912 de los datos siempre se realiza por bloques. Los datos leidos (array de 3 dimensiones)
1913 son almacenados en tres buffer's para el Self Spectra, el Cross Spectra y el DC Channel.
1913 son almacenados en tres buffer's para el Self Spectra, el Cross Spectra y el DC Channel.
1914
1914
1915 paresCanalesIguales * alturas * perfiles (Self Spectra)
1915 paresCanalesIguales * alturas * perfiles (Self Spectra)
1916 paresCanalesDiferentes * alturas * perfiles (Cross Spectra)
1916 paresCanalesDiferentes * alturas * perfiles (Cross Spectra)
1917 canales * alturas (DC Channels)
1917 canales * alturas (DC Channels)
1918
1918
1919 Esta clase contiene instancias (objetos) de las clases BasicHeader, SystemHeader,
1919 Esta clase contiene instancias (objetos) de las clases BasicHeader, SystemHeader,
1920 RadarControllerHeader y Spectra. Los tres primeros se usan para almacenar informacion de la
1920 RadarControllerHeader y Spectra. Los tres primeros se usan para almacenar informacion de la
1921 cabecera de datos (metadata), y el cuarto (Spectra) para obtener y almacenar un bloque de
1921 cabecera de datos (metadata), y el cuarto (Spectra) para obtener y almacenar un bloque de
1922 datos desde el "buffer" cada vez que se ejecute el metodo "getData".
1922 datos desde el "buffer" cada vez que se ejecute el metodo "getData".
1923
1923
1924 Example:
1924 Example:
1925 dpath = "/home/myuser/data"
1925 dpath = "/home/myuser/data"
1926
1926
1927 startTime = datetime.datetime(2010,1,20,0,0,0,0,0,0)
1927 startTime = datetime.datetime(2010,1,20,0,0,0,0,0,0)
1928
1928
1929 endTime = datetime.datetime(2010,1,21,23,59,59,0,0,0)
1929 endTime = datetime.datetime(2010,1,21,23,59,59,0,0,0)
1930
1930
1931 readerObj = SpectraReader()
1931 readerObj = SpectraReader()
1932
1932
1933 readerObj.setup(dpath, startTime, endTime)
1933 readerObj.setup(dpath, startTime, endTime)
1934
1934
1935 while(True):
1935 while(True):
1936
1936
1937 readerObj.getData()
1937 readerObj.getData()
1938
1938
1939 print readerObj.data_spc
1939 print readerObj.data_spc
1940
1940
1941 print readerObj.data_cspc
1941 print readerObj.data_cspc
1942
1942
1943 print readerObj.data_dc
1943 print readerObj.data_dc
1944
1944
1945 if readerObj.flagNoMoreFiles:
1945 if readerObj.flagNoMoreFiles:
1946 break
1946 break
1947
1947
1948 """
1948 """
1949
1949
1950 pts2read_SelfSpectra = 0
1950 pts2read_SelfSpectra = 0
1951
1951
1952 pts2read_CrossSpectra = 0
1952 pts2read_CrossSpectra = 0
1953
1953
1954 pts2read_DCchannels = 0
1954 pts2read_DCchannels = 0
1955
1955
1956 ext = ".pdata"
1956 ext = ".pdata"
1957
1957
1958 optchar = "P"
1958 optchar = "P"
1959
1959
1960 dataOut = None
1960 dataOut = None
1961
1961
1962 nRdChannels = None
1962 nRdChannels = None
1963
1963
1964 nRdPairs = None
1964 nRdPairs = None
1965
1965
1966 rdPairList = []
1966 rdPairList = []
1967
1967
1968 def __init__(self):
1968 def __init__(self):
1969 """
1969 """
1970 Inicializador de la clase SpectraReader para la lectura de datos de espectros.
1970 Inicializador de la clase SpectraReader para la lectura de datos de espectros.
1971
1971
1972 Inputs:
1972 Inputs:
1973 dataOut : Objeto de la clase Spectra. Este objeto sera utilizado para
1973 dataOut : Objeto de la clase Spectra. Este objeto sera utilizado para
1974 almacenar un perfil de datos cada vez que se haga un requerimiento
1974 almacenar un perfil de datos cada vez que se haga un requerimiento
1975 (getData). El perfil sera obtenido a partir del buffer de datos,
1975 (getData). El perfil sera obtenido a partir del buffer de datos,
1976 si el buffer esta vacio se hara un nuevo proceso de lectura de un
1976 si el buffer esta vacio se hara un nuevo proceso de lectura de un
1977 bloque de datos.
1977 bloque de datos.
1978 Si este parametro no es pasado se creara uno internamente.
1978 Si este parametro no es pasado se creara uno internamente.
1979
1979
1980 Affected:
1980 Affected:
1981 self.dataOut
1981 self.dataOut
1982
1982
1983 Return : None
1983 Return : None
1984 """
1984 """
1985
1985
1986 self.isConfig = False
1986 self.isConfig = False
1987
1987
1988 self.pts2read_SelfSpectra = 0
1988 self.pts2read_SelfSpectra = 0
1989
1989
1990 self.pts2read_CrossSpectra = 0
1990 self.pts2read_CrossSpectra = 0
1991
1991
1992 self.pts2read_DCchannels = 0
1992 self.pts2read_DCchannels = 0
1993
1993
1994 self.datablock = None
1994 self.datablock = None
1995
1995
1996 self.utc = None
1996 self.utc = None
1997
1997
1998 self.ext = ".pdata"
1998 self.ext = ".pdata"
1999
1999
2000 self.optchar = "P"
2000 self.optchar = "P"
2001
2001
2002 self.basicHeaderObj = BasicHeader(LOCALTIME)
2002 self.basicHeaderObj = BasicHeader(LOCALTIME)
2003
2003
2004 self.systemHeaderObj = SystemHeader()
2004 self.systemHeaderObj = SystemHeader()
2005
2005
2006 self.radarControllerHeaderObj = RadarControllerHeader()
2006 self.radarControllerHeaderObj = RadarControllerHeader()
2007
2007
2008 self.processingHeaderObj = ProcessingHeader()
2008 self.processingHeaderObj = ProcessingHeader()
2009
2009
2010 self.online = 0
2010 self.online = 0
2011
2011
2012 self.fp = None
2012 self.fp = None
2013
2013
2014 self.idFile = None
2014 self.idFile = None
2015
2015
2016 self.dtype = None
2016 self.dtype = None
2017
2017
2018 self.fileSizeByHeader = None
2018 self.fileSizeByHeader = None
2019
2019
2020 self.filenameList = []
2020 self.filenameList = []
2021
2021
2022 self.filename = None
2022 self.filename = None
2023
2023
2024 self.fileSize = None
2024 self.fileSize = None
2025
2025
2026 self.firstHeaderSize = 0
2026 self.firstHeaderSize = 0
2027
2027
2028 self.basicHeaderSize = 24
2028 self.basicHeaderSize = 24
2029
2029
2030 self.pathList = []
2030 self.pathList = []
2031
2031
2032 self.lastUTTime = 0
2032 self.lastUTTime = 0
2033
2033
2034 self.maxTimeStep = 30
2034 self.maxTimeStep = 30
2035
2035
2036 self.flagNoMoreFiles = 0
2036 self.flagNoMoreFiles = 0
2037
2037
2038 self.set = 0
2038 self.set = 0
2039
2039
2040 self.path = None
2040 self.path = None
2041
2041
2042 self.delay = 60 #seconds
2042 self.delay = 60 #seconds
2043
2043
2044 self.nTries = 3 #quantity tries
2044 self.nTries = 3 #quantity tries
2045
2045
2046 self.nFiles = 3 #number of files for searching
2046 self.nFiles = 3 #number of files for searching
2047
2047
2048 self.nReadBlocks = 0
2048 self.nReadBlocks = 0
2049
2049
2050 self.flagIsNewFile = 1
2050 self.flagIsNewFile = 1
2051
2051
2052 self.__isFirstTimeOnline = 1
2052 self.__isFirstTimeOnline = 1
2053
2053
2054 self.ippSeconds = 0
2054 self.ippSeconds = 0
2055
2055
2056 self.flagTimeBlock = 0
2056 self.flagTimeBlock = 0
2057
2057
2058 self.flagIsNewBlock = 0
2058 self.flagIsNewBlock = 0
2059
2059
2060 self.nTotalBlocks = 0
2060 self.nTotalBlocks = 0
2061
2061
2062 self.blocksize = 0
2062 self.blocksize = 0
2063
2063
2064 self.dataOut = self.createObjByDefault()
2064 self.dataOut = self.createObjByDefault()
2065
2065
2066 self.profileIndex = 1 #Always
2066 self.profileIndex = 1 #Always
2067
2067
2068
2068
2069 def createObjByDefault(self):
2069 def createObjByDefault(self):
2070
2070
2071 dataObj = Spectra()
2071 dataObj = Spectra()
2072
2072
2073 return dataObj
2073 return dataObj
2074
2074
2075 def __hasNotDataInBuffer(self):
2075 def __hasNotDataInBuffer(self):
2076 return 1
2076 return 1
2077
2077
2078
2078
2079 def getBlockDimension(self):
2079 def getBlockDimension(self):
2080 """
2080 """
2081 Obtiene la cantidad de puntos a leer por cada bloque de datos
2081 Obtiene la cantidad de puntos a leer por cada bloque de datos
2082
2082
2083 Affected:
2083 Affected:
2084 self.nRdChannels
2084 self.nRdChannels
2085 self.nRdPairs
2085 self.nRdPairs
2086 self.pts2read_SelfSpectra
2086 self.pts2read_SelfSpectra
2087 self.pts2read_CrossSpectra
2087 self.pts2read_CrossSpectra
2088 self.pts2read_DCchannels
2088 self.pts2read_DCchannels
2089 self.blocksize
2089 self.blocksize
2090 self.dataOut.nChannels
2090 self.dataOut.nChannels
2091 self.dataOut.nPairs
2091 self.dataOut.nPairs
2092
2092
2093 Return:
2093 Return:
2094 None
2094 None
2095 """
2095 """
2096 self.nRdChannels = 0
2096 self.nRdChannels = 0
2097 self.nRdPairs = 0
2097 self.nRdPairs = 0
2098 self.rdPairList = []
2098 self.rdPairList = []
2099
2099
2100 for i in range(0, self.processingHeaderObj.totalSpectra*2, 2):
2100 for i in range(0, self.processingHeaderObj.totalSpectra*2, 2):
2101 if self.processingHeaderObj.spectraComb[i] == self.processingHeaderObj.spectraComb[i+1]:
2101 if self.processingHeaderObj.spectraComb[i] == self.processingHeaderObj.spectraComb[i+1]:
2102 self.nRdChannels = self.nRdChannels + 1 #par de canales iguales
2102 self.nRdChannels = self.nRdChannels + 1 #par de canales iguales
2103 else:
2103 else:
2104 self.nRdPairs = self.nRdPairs + 1 #par de canales diferentes
2104 self.nRdPairs = self.nRdPairs + 1 #par de canales diferentes
2105 self.rdPairList.append((self.processingHeaderObj.spectraComb[i], self.processingHeaderObj.spectraComb[i+1]))
2105 self.rdPairList.append((self.processingHeaderObj.spectraComb[i], self.processingHeaderObj.spectraComb[i+1]))
2106
2106
2107 pts2read = self.processingHeaderObj.nHeights * self.processingHeaderObj.profilesPerBlock
2107 pts2read = self.processingHeaderObj.nHeights * self.processingHeaderObj.profilesPerBlock
2108
2108
2109 self.pts2read_SelfSpectra = int(self.nRdChannels * pts2read)
2109 self.pts2read_SelfSpectra = int(self.nRdChannels * pts2read)
2110 self.blocksize = self.pts2read_SelfSpectra
2110 self.blocksize = self.pts2read_SelfSpectra
2111
2111
2112 if self.processingHeaderObj.flag_cspc:
2112 if self.processingHeaderObj.flag_cspc:
2113 self.pts2read_CrossSpectra = int(self.nRdPairs * pts2read)
2113 self.pts2read_CrossSpectra = int(self.nRdPairs * pts2read)
2114 self.blocksize += self.pts2read_CrossSpectra
2114 self.blocksize += self.pts2read_CrossSpectra
2115
2115
2116 if self.processingHeaderObj.flag_dc:
2116 if self.processingHeaderObj.flag_dc:
2117 self.pts2read_DCchannels = int(self.systemHeaderObj.nChannels * self.processingHeaderObj.nHeights)
2117 self.pts2read_DCchannels = int(self.systemHeaderObj.nChannels * self.processingHeaderObj.nHeights)
2118 self.blocksize += self.pts2read_DCchannels
2118 self.blocksize += self.pts2read_DCchannels
2119
2119
2120 # self.blocksize = self.pts2read_SelfSpectra + self.pts2read_CrossSpectra + self.pts2read_DCchannels
2120 # self.blocksize = self.pts2read_SelfSpectra + self.pts2read_CrossSpectra + self.pts2read_DCchannels
2121
2121
2122
2122
2123 def readBlock(self):
2123 def readBlock(self):
2124 """
2124 """
2125 Lee el bloque de datos desde la posicion actual del puntero del archivo
2125 Lee el bloque de datos desde la posicion actual del puntero del archivo
2126 (self.fp) y actualiza todos los parametros relacionados al bloque de datos
2126 (self.fp) y actualiza todos los parametros relacionados al bloque de datos
2127 (metadata + data). La data leida es almacenada en el buffer y el contador del buffer
2127 (metadata + data). La data leida es almacenada en el buffer y el contador del buffer
2128 es seteado a 0
2128 es seteado a 0
2129
2129
2130 Return: None
2130 Return: None
2131
2131
2132 Variables afectadas:
2132 Variables afectadas:
2133
2133
2134 self.flagIsNewFile
2134 self.flagIsNewFile
2135 self.flagIsNewBlock
2135 self.flagIsNewBlock
2136 self.nTotalBlocks
2136 self.nTotalBlocks
2137 self.data_spc
2137 self.data_spc
2138 self.data_cspc
2138 self.data_cspc
2139 self.data_dc
2139 self.data_dc
2140
2140
2141 Exceptions:
2141 Exceptions:
2142 Si un bloque leido no es un bloque valido
2142 Si un bloque leido no es un bloque valido
2143 """
2143 """
2144 blockOk_flag = False
2144 blockOk_flag = False
2145 fpointer = self.fp.tell()
2145 fpointer = self.fp.tell()
2146
2146
2147 spc = numpy.fromfile( self.fp, self.dtype[0], self.pts2read_SelfSpectra )
2147 spc = numpy.fromfile( self.fp, self.dtype[0], self.pts2read_SelfSpectra )
2148 spc = spc.reshape( (self.nRdChannels, self.processingHeaderObj.nHeights, self.processingHeaderObj.profilesPerBlock) ) #transforma a un arreglo 3D
2148 spc = spc.reshape( (self.nRdChannels, self.processingHeaderObj.nHeights, self.processingHeaderObj.profilesPerBlock) ) #transforma a un arreglo 3D
2149
2149
2150 if self.processingHeaderObj.flag_cspc:
2150 if self.processingHeaderObj.flag_cspc:
2151 cspc = numpy.fromfile( self.fp, self.dtype, self.pts2read_CrossSpectra )
2151 cspc = numpy.fromfile( self.fp, self.dtype, self.pts2read_CrossSpectra )
2152 cspc = cspc.reshape( (self.nRdPairs, self.processingHeaderObj.nHeights, self.processingHeaderObj.profilesPerBlock) ) #transforma a un arreglo 3D
2152 cspc = cspc.reshape( (self.nRdPairs, self.processingHeaderObj.nHeights, self.processingHeaderObj.profilesPerBlock) ) #transforma a un arreglo 3D
2153
2153
2154 if self.processingHeaderObj.flag_dc:
2154 if self.processingHeaderObj.flag_dc:
2155 dc = numpy.fromfile( self.fp, self.dtype, self.pts2read_DCchannels ) #int(self.processingHeaderObj.nHeights*self.systemHeaderObj.nChannels) )
2155 dc = numpy.fromfile( self.fp, self.dtype, self.pts2read_DCchannels ) #int(self.processingHeaderObj.nHeights*self.systemHeaderObj.nChannels) )
2156 dc = dc.reshape( (self.systemHeaderObj.nChannels, self.processingHeaderObj.nHeights) ) #transforma a un arreglo 2D
2156 dc = dc.reshape( (self.systemHeaderObj.nChannels, self.processingHeaderObj.nHeights) ) #transforma a un arreglo 2D
2157
2157
2158
2158
2159 if not(self.processingHeaderObj.shif_fft):
2159 if not(self.processingHeaderObj.shif_fft):
2160 #desplaza a la derecha en el eje 2 determinadas posiciones
2160 #desplaza a la derecha en el eje 2 determinadas posiciones
2161 shift = int(self.processingHeaderObj.profilesPerBlock/2)
2161 shift = int(self.processingHeaderObj.profilesPerBlock/2)
2162 spc = numpy.roll( spc, shift , axis=2 )
2162 spc = numpy.roll( spc, shift , axis=2 )
2163
2163
2164 if self.processingHeaderObj.flag_cspc:
2164 if self.processingHeaderObj.flag_cspc:
2165 #desplaza a la derecha en el eje 2 determinadas posiciones
2165 #desplaza a la derecha en el eje 2 determinadas posiciones
2166 cspc = numpy.roll( cspc, shift, axis=2 )
2166 cspc = numpy.roll( cspc, shift, axis=2 )
2167
2167
2168 # self.processingHeaderObj.shif_fft = True
2168 # self.processingHeaderObj.shif_fft = True
2169
2169
2170 spc = numpy.transpose( spc, (0,2,1) )
2170 spc = numpy.transpose( spc, (0,2,1) )
2171 self.data_spc = spc
2171 self.data_spc = spc
2172
2172
2173 if self.processingHeaderObj.flag_cspc:
2173 if self.processingHeaderObj.flag_cspc:
2174 cspc = numpy.transpose( cspc, (0,2,1) )
2174 cspc = numpy.transpose( cspc, (0,2,1) )
2175 self.data_cspc = cspc['real'] + cspc['imag']*1j
2175 self.data_cspc = cspc['real'] + cspc['imag']*1j
2176 else:
2176 else:
2177 self.data_cspc = None
2177 self.data_cspc = None
2178
2178
2179 if self.processingHeaderObj.flag_dc:
2179 if self.processingHeaderObj.flag_dc:
2180 self.data_dc = dc['real'] + dc['imag']*1j
2180 self.data_dc = dc['real'] + dc['imag']*1j
2181 else:
2181 else:
2182 self.data_dc = None
2182 self.data_dc = None
2183
2183
2184 self.flagIsNewFile = 0
2184 self.flagIsNewFile = 0
2185 self.flagIsNewBlock = 1
2185 self.flagIsNewBlock = 1
2186
2186
2187 self.nTotalBlocks += 1
2187 self.nTotalBlocks += 1
2188 self.nReadBlocks += 1
2188 self.nReadBlocks += 1
2189
2189
2190 return 1
2190 return 1
2191
2191
2192 def getFirstHeader(self):
2192 def getFirstHeader(self):
2193
2193
2194 self.dataOut.dtype = self.dtype
2194 self.dataOut.dtype = self.dtype
2195
2195
2196 self.dataOut.nPairs = self.nRdPairs
2196 self.dataOut.nPairs = self.nRdPairs
2197
2197
2198 self.dataOut.pairsList = self.rdPairList
2198 self.dataOut.pairsList = self.rdPairList
2199
2199
2200 self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock
2200 self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock
2201
2201
2202 self.dataOut.nFFTPoints = self.processingHeaderObj.profilesPerBlock
2202 self.dataOut.nFFTPoints = self.processingHeaderObj.profilesPerBlock
2203
2203
2204 self.dataOut.nCohInt = self.processingHeaderObj.nCohInt
2204 self.dataOut.nCohInt = self.processingHeaderObj.nCohInt
2205
2205
2206 self.dataOut.nIncohInt = self.processingHeaderObj.nIncohInt
2206 self.dataOut.nIncohInt = self.processingHeaderObj.nIncohInt
2207
2207
2208 xf = self.processingHeaderObj.firstHeight + self.processingHeaderObj.nHeights*self.processingHeaderObj.deltaHeight
2208 xf = self.processingHeaderObj.firstHeight + self.processingHeaderObj.nHeights*self.processingHeaderObj.deltaHeight
2209
2209
2210 self.dataOut.heightList = numpy.arange(self.processingHeaderObj.firstHeight, xf, self.processingHeaderObj.deltaHeight)
2210 self.dataOut.heightList = numpy.arange(self.processingHeaderObj.firstHeight, xf, self.processingHeaderObj.deltaHeight)
2211
2211
2212 self.dataOut.channelList = range(self.systemHeaderObj.nChannels)
2212 self.dataOut.channelList = range(self.systemHeaderObj.nChannels)
2213
2213
2214 self.dataOut.ippSeconds = self.ippSeconds
2214 self.dataOut.ippSeconds = self.ippSeconds
2215
2215
2216 self.dataOut.timeInterval = self.ippSeconds * self.processingHeaderObj.nCohInt * self.processingHeaderObj.nIncohInt * self.dataOut.nFFTPoints
2216 self.dataOut.timeInterval = self.ippSeconds * self.processingHeaderObj.nCohInt * self.processingHeaderObj.nIncohInt * self.dataOut.nFFTPoints
2217
2217
2218 self.dataOut.systemHeaderObj = self.systemHeaderObj.copy()
2218 self.dataOut.systemHeaderObj = self.systemHeaderObj.copy()
2219
2219
2220 self.dataOut.radarControllerHeaderObj = self.radarControllerHeaderObj.copy()
2220 self.dataOut.radarControllerHeaderObj = self.radarControllerHeaderObj.copy()
2221
2221
2222 self.dataOut.flagShiftFFT = self.processingHeaderObj.shif_fft
2222 self.dataOut.flagShiftFFT = self.processingHeaderObj.shif_fft
2223
2223
2224 self.dataOut.flagDecodeData = False #asumo q la data no esta decodificada
2224 self.dataOut.flagDecodeData = False #asumo q la data no esta decodificada
2225
2225
2226 self.dataOut.flagDeflipData = True #asumo q la data no esta sin flip
2226 self.dataOut.flagDeflipData = True #asumo q la data no esta sin flip
2227
2227
2228 if self.processingHeaderObj.code != None:
2228 if self.processingHeaderObj.code != None:
2229
2229
2230 self.dataOut.nCode = self.processingHeaderObj.nCode
2230 self.dataOut.nCode = self.processingHeaderObj.nCode
2231
2231
2232 self.dataOut.nBaud = self.processingHeaderObj.nBaud
2232 self.dataOut.nBaud = self.processingHeaderObj.nBaud
2233
2233
2234 self.dataOut.code = self.processingHeaderObj.code
2234 self.dataOut.code = self.processingHeaderObj.code
2235
2235
2236 self.dataOut.flagDecodeData = True
2236 self.dataOut.flagDecodeData = True
2237
2237
2238 def getData(self):
2238 def getData(self):
2239 """
2239 """
2240 Copia el buffer de lectura a la clase "Spectra",
2240 Copia el buffer de lectura a la clase "Spectra",
2241 con todos los parametros asociados a este (metadata). cuando no hay datos en el buffer de
2241 con todos los parametros asociados a este (metadata). cuando no hay datos en el buffer de
2242 lectura es necesario hacer una nueva lectura de los bloques de datos usando "readNextBlock"
2242 lectura es necesario hacer una nueva lectura de los bloques de datos usando "readNextBlock"
2243
2243
2244 Return:
2244 Return:
2245 0 : Si no hay mas archivos disponibles
2245 0 : Si no hay mas archivos disponibles
2246 1 : Si hizo una buena copia del buffer
2246 1 : Si hizo una buena copia del buffer
2247
2247
2248 Affected:
2248 Affected:
2249 self.dataOut
2249 self.dataOut
2250
2250
2251 self.flagTimeBlock
2251 self.flagTimeBlock
2252 self.flagIsNewBlock
2252 self.flagIsNewBlock
2253 """
2253 """
2254
2254
2255 if self.flagNoMoreFiles:
2255 if self.flagNoMoreFiles:
2256 self.dataOut.flagNoData = True
2256 self.dataOut.flagNoData = True
2257 print 'Process finished'
2257 print 'Process finished'
2258 return 0
2258 return 0
2259
2259
2260 self.flagTimeBlock = 0
2260 self.flagTimeBlock = 0
2261 self.flagIsNewBlock = 0
2261 self.flagIsNewBlock = 0
2262
2262
2263 if self.__hasNotDataInBuffer():
2263 if self.__hasNotDataInBuffer():
2264
2264
2265 if not( self.readNextBlock() ):
2265 if not( self.readNextBlock() ):
2266 self.dataOut.flagNoData = True
2266 self.dataOut.flagNoData = True
2267 return 0
2267 return 0
2268
2268
2269 #data es un numpy array de 3 dmensiones (perfiles, alturas y canales)
2269 #data es un numpy array de 3 dmensiones (perfiles, alturas y canales)
2270
2270
2271 if self.data_dc == None:
2271 if self.data_dc == None:
2272 self.dataOut.flagNoData = True
2272 self.dataOut.flagNoData = True
2273 return 0
2273 return 0
2274
2274
2275 self.getBasicHeader()
2275 self.getBasicHeader()
2276
2276
2277 self.getFirstHeader()
2277 self.getFirstHeader()
2278
2278
2279 self.dataOut.data_spc = self.data_spc
2279 self.dataOut.data_spc = self.data_spc
2280
2280
2281 self.dataOut.data_cspc = self.data_cspc
2281 self.dataOut.data_cspc = self.data_cspc
2282
2282
2283 self.dataOut.data_dc = self.data_dc
2283 self.dataOut.data_dc = self.data_dc
2284
2284
2285 self.dataOut.flagNoData = False
2285 self.dataOut.flagNoData = False
2286
2286
2287 self.dataOut.realtime = self.online
2287 self.dataOut.realtime = self.online
2288
2288
2289 return self.dataOut.data_spc
2289 return self.dataOut.data_spc
2290
2290
2291
2291
2292 class SpectraWriter(JRODataWriter):
2292 class SpectraWriter(JRODataWriter):
2293
2293
2294 """
2294 """
2295 Esta clase permite escribir datos de espectros a archivos procesados (.pdata). La escritura
2295 Esta clase permite escribir datos de espectros a archivos procesados (.pdata). La escritura
2296 de los datos siempre se realiza por bloques.
2296 de los datos siempre se realiza por bloques.
2297 """
2297 """
2298
2298
2299 ext = ".pdata"
2299 ext = ".pdata"
2300
2300
2301 optchar = "P"
2301 optchar = "P"
2302
2302
2303 shape_spc_Buffer = None
2303 shape_spc_Buffer = None
2304
2304
2305 shape_cspc_Buffer = None
2305 shape_cspc_Buffer = None
2306
2306
2307 shape_dc_Buffer = None
2307 shape_dc_Buffer = None
2308
2308
2309 data_spc = None
2309 data_spc = None
2310
2310
2311 data_cspc = None
2311 data_cspc = None
2312
2312
2313 data_dc = None
2313 data_dc = None
2314
2314
2315 # dataOut = None
2315 # dataOut = None
2316
2316
2317 def __init__(self):
2317 def __init__(self):
2318 """
2318 """
2319 Inicializador de la clase SpectraWriter para la escritura de datos de espectros.
2319 Inicializador de la clase SpectraWriter para la escritura de datos de espectros.
2320
2320
2321 Affected:
2321 Affected:
2322 self.dataOut
2322 self.dataOut
2323 self.basicHeaderObj
2323 self.basicHeaderObj
2324 self.systemHeaderObj
2324 self.systemHeaderObj
2325 self.radarControllerHeaderObj
2325 self.radarControllerHeaderObj
2326 self.processingHeaderObj
2326 self.processingHeaderObj
2327
2327
2328 Return: None
2328 Return: None
2329 """
2329 """
2330
2330
2331 self.isConfig = False
2331 self.isConfig = False
2332
2332
2333 self.nTotalBlocks = 0
2333 self.nTotalBlocks = 0
2334
2334
2335 self.data_spc = None
2335 self.data_spc = None
2336
2336
2337 self.data_cspc = None
2337 self.data_cspc = None
2338
2338
2339 self.data_dc = None
2339 self.data_dc = None
2340
2340
2341 self.fp = None
2341 self.fp = None
2342
2342
2343 self.flagIsNewFile = 1
2343 self.flagIsNewFile = 1
2344
2344
2345 self.nTotalBlocks = 0
2345 self.nTotalBlocks = 0
2346
2346
2347 self.flagIsNewBlock = 0
2347 self.flagIsNewBlock = 0
2348
2348
2349 self.setFile = None
2349 self.setFile = None
2350
2350
2351 self.dtype = None
2351 self.dtype = None
2352
2352
2353 self.path = None
2353 self.path = None
2354
2354
2355 self.noMoreFiles = 0
2355 self.noMoreFiles = 0
2356
2356
2357 self.filename = None
2357 self.filename = None
2358
2358
2359 self.basicHeaderObj = BasicHeader(LOCALTIME)
2359 self.basicHeaderObj = BasicHeader(LOCALTIME)
2360
2360
2361 self.systemHeaderObj = SystemHeader()
2361 self.systemHeaderObj = SystemHeader()
2362
2362
2363 self.radarControllerHeaderObj = RadarControllerHeader()
2363 self.radarControllerHeaderObj = RadarControllerHeader()
2364
2364
2365 self.processingHeaderObj = ProcessingHeader()
2365 self.processingHeaderObj = ProcessingHeader()
2366
2366
2367
2367
2368 def hasAllDataInBuffer(self):
2368 def hasAllDataInBuffer(self):
2369 return 1
2369 return 1
2370
2370
2371
2371
2372 def setBlockDimension(self):
2372 def setBlockDimension(self):
2373 """
2373 """
2374 Obtiene las formas dimensionales del los subbloques de datos que componen un bloque
2374 Obtiene las formas dimensionales del los subbloques de datos que componen un bloque
2375
2375
2376 Affected:
2376 Affected:
2377 self.shape_spc_Buffer
2377 self.shape_spc_Buffer
2378 self.shape_cspc_Buffer
2378 self.shape_cspc_Buffer
2379 self.shape_dc_Buffer
2379 self.shape_dc_Buffer
2380
2380
2381 Return: None
2381 Return: None
2382 """
2382 """
2383 self.shape_spc_Buffer = (self.dataOut.nChannels,
2383 self.shape_spc_Buffer = (self.dataOut.nChannels,
2384 self.processingHeaderObj.nHeights,
2384 self.processingHeaderObj.nHeights,
2385 self.processingHeaderObj.profilesPerBlock)
2385 self.processingHeaderObj.profilesPerBlock)
2386
2386
2387 self.shape_cspc_Buffer = (self.dataOut.nPairs,
2387 self.shape_cspc_Buffer = (self.dataOut.nPairs,
2388 self.processingHeaderObj.nHeights,
2388 self.processingHeaderObj.nHeights,
2389 self.processingHeaderObj.profilesPerBlock)
2389 self.processingHeaderObj.profilesPerBlock)
2390
2390
2391 self.shape_dc_Buffer = (self.dataOut.nChannels,
2391 self.shape_dc_Buffer = (self.dataOut.nChannels,
2392 self.processingHeaderObj.nHeights)
2392 self.processingHeaderObj.nHeights)
2393
2393
2394
2394
2395 def writeBlock(self):
2395 def writeBlock(self):
2396 """
2396 """
2397 Escribe el buffer en el file designado
2397 Escribe el buffer en el file designado
2398
2398
2399 Affected:
2399 Affected:
2400 self.data_spc
2400 self.data_spc
2401 self.data_cspc
2401 self.data_cspc
2402 self.data_dc
2402 self.data_dc
2403 self.flagIsNewFile
2403 self.flagIsNewFile
2404 self.flagIsNewBlock
2404 self.flagIsNewBlock
2405 self.nTotalBlocks
2405 self.nTotalBlocks
2406 self.nWriteBlocks
2406 self.nWriteBlocks
2407
2407
2408 Return: None
2408 Return: None
2409 """
2409 """
2410
2410
2411 spc = numpy.transpose( self.data_spc, (0,2,1) )
2411 spc = numpy.transpose( self.data_spc, (0,2,1) )
2412 if not( self.processingHeaderObj.shif_fft ):
2412 if not( self.processingHeaderObj.shif_fft ):
2413 spc = numpy.roll( spc, self.processingHeaderObj.profilesPerBlock/2, axis=2 ) #desplaza a la derecha en el eje 2 determinadas posiciones
2413 spc = numpy.roll( spc, self.processingHeaderObj.profilesPerBlock/2, axis=2 ) #desplaza a la derecha en el eje 2 determinadas posiciones
2414 data = spc.reshape((-1))
2414 data = spc.reshape((-1))
2415 data = data.astype(self.dtype[0])
2415 data = data.astype(self.dtype[0])
2416 data.tofile(self.fp)
2416 data.tofile(self.fp)
2417
2417
2418 if self.data_cspc != None:
2418 if self.data_cspc != None:
2419 data = numpy.zeros( self.shape_cspc_Buffer, self.dtype )
2419 data = numpy.zeros( self.shape_cspc_Buffer, self.dtype )
2420 cspc = numpy.transpose( self.data_cspc, (0,2,1) )
2420 cspc = numpy.transpose( self.data_cspc, (0,2,1) )
2421 if not( self.processingHeaderObj.shif_fft ):
2421 if not( self.processingHeaderObj.shif_fft ):
2422 cspc = numpy.roll( cspc, self.processingHeaderObj.profilesPerBlock/2, axis=2 ) #desplaza a la derecha en el eje 2 determinadas posiciones
2422 cspc = numpy.roll( cspc, self.processingHeaderObj.profilesPerBlock/2, axis=2 ) #desplaza a la derecha en el eje 2 determinadas posiciones
2423 data['real'] = cspc.real
2423 data['real'] = cspc.real
2424 data['imag'] = cspc.imag
2424 data['imag'] = cspc.imag
2425 data = data.reshape((-1))
2425 data = data.reshape((-1))
2426 data.tofile(self.fp)
2426 data.tofile(self.fp)
2427
2427
2428 if self.data_dc != None:
2428 if self.data_dc != None:
2429 data = numpy.zeros( self.shape_dc_Buffer, self.dtype )
2429 data = numpy.zeros( self.shape_dc_Buffer, self.dtype )
2430 dc = self.data_dc
2430 dc = self.data_dc
2431 data['real'] = dc.real
2431 data['real'] = dc.real
2432 data['imag'] = dc.imag
2432 data['imag'] = dc.imag
2433 data = data.reshape((-1))
2433 data = data.reshape((-1))
2434 data.tofile(self.fp)
2434 data.tofile(self.fp)
2435
2435
2436 self.data_spc.fill(0)
2436 self.data_spc.fill(0)
2437
2437
2438 if self.data_dc != None:
2438 if self.data_dc != None:
2439 self.data_dc.fill(0)
2439 self.data_dc.fill(0)
2440
2440
2441 if self.data_cspc != None:
2441 if self.data_cspc != None:
2442 self.data_cspc.fill(0)
2442 self.data_cspc.fill(0)
2443
2443
2444 self.flagIsNewFile = 0
2444 self.flagIsNewFile = 0
2445 self.flagIsNewBlock = 1
2445 self.flagIsNewBlock = 1
2446 self.nTotalBlocks += 1
2446 self.nTotalBlocks += 1
2447 self.nWriteBlocks += 1
2447 self.nWriteBlocks += 1
2448 self.blockIndex += 1
2448 self.blockIndex += 1
2449
2449
2450
2450
2451 def putData(self):
2451 def putData(self):
2452 """
2452 """
2453 Setea un bloque de datos y luego los escribe en un file
2453 Setea un bloque de datos y luego los escribe en un file
2454
2454
2455 Affected:
2455 Affected:
2456 self.data_spc
2456 self.data_spc
2457 self.data_cspc
2457 self.data_cspc
2458 self.data_dc
2458 self.data_dc
2459
2459
2460 Return:
2460 Return:
2461 0 : Si no hay data o no hay mas files que puedan escribirse
2461 0 : Si no hay data o no hay mas files que puedan escribirse
2462 1 : Si se escribio la data de un bloque en un file
2462 1 : Si se escribio la data de un bloque en un file
2463 """
2463 """
2464
2464
2465 if self.dataOut.flagNoData:
2465 if self.dataOut.flagNoData:
2466 return 0
2466 return 0
2467
2467
2468 self.flagIsNewBlock = 0
2468 self.flagIsNewBlock = 0
2469
2469
2470 if self.dataOut.flagTimeBlock:
2470 if self.dataOut.flagTimeBlock:
2471 self.data_spc.fill(0)
2471 self.data_spc.fill(0)
2472 self.data_cspc.fill(0)
2472 self.data_cspc.fill(0)
2473 self.data_dc.fill(0)
2473 self.data_dc.fill(0)
2474 self.setNextFile()
2474 self.setNextFile()
2475
2475
2476 if self.flagIsNewFile == 0:
2476 if self.flagIsNewFile == 0:
2477 self.setBasicHeader()
2477 self.setBasicHeader()
2478
2478
2479 self.data_spc = self.dataOut.data_spc.copy()
2479 self.data_spc = self.dataOut.data_spc.copy()
2480 if self.dataOut.data_cspc != None:
2480 if self.dataOut.data_cspc != None:
2481 self.data_cspc = self.dataOut.data_cspc.copy()
2481 self.data_cspc = self.dataOut.data_cspc.copy()
2482 self.data_dc = self.dataOut.data_dc.copy()
2482 self.data_dc = self.dataOut.data_dc.copy()
2483
2483
2484 # #self.processingHeaderObj.dataBlocksPerFile)
2484 # #self.processingHeaderObj.dataBlocksPerFile)
2485 if self.hasAllDataInBuffer():
2485 if self.hasAllDataInBuffer():
2486 # self.setFirstHeader()
2486 # self.setFirstHeader()
2487 self.writeNextBlock()
2487 self.writeNextBlock()
2488
2488
2489 return 1
2489 return 1
2490
2490
2491
2491
2492 def __getProcessFlags(self):
2492 def __getProcessFlags(self):
2493
2493
2494 processFlags = 0
2494 processFlags = 0
2495
2495
2496 dtype0 = numpy.dtype([('real','<i1'),('imag','<i1')])
2496 dtype0 = numpy.dtype([('real','<i1'),('imag','<i1')])
2497 dtype1 = numpy.dtype([('real','<i2'),('imag','<i2')])
2497 dtype1 = numpy.dtype([('real','<i2'),('imag','<i2')])
2498 dtype2 = numpy.dtype([('real','<i4'),('imag','<i4')])
2498 dtype2 = numpy.dtype([('real','<i4'),('imag','<i4')])
2499 dtype3 = numpy.dtype([('real','<i8'),('imag','<i8')])
2499 dtype3 = numpy.dtype([('real','<i8'),('imag','<i8')])
2500 dtype4 = numpy.dtype([('real','<f4'),('imag','<f4')])
2500 dtype4 = numpy.dtype([('real','<f4'),('imag','<f4')])
2501 dtype5 = numpy.dtype([('real','<f8'),('imag','<f8')])
2501 dtype5 = numpy.dtype([('real','<f8'),('imag','<f8')])
2502
2502
2503 dtypeList = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5]
2503 dtypeList = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5]
2504
2504
2505
2505
2506
2506
2507 datatypeValueList = [PROCFLAG.DATATYPE_CHAR,
2507 datatypeValueList = [PROCFLAG.DATATYPE_CHAR,
2508 PROCFLAG.DATATYPE_SHORT,
2508 PROCFLAG.DATATYPE_SHORT,
2509 PROCFLAG.DATATYPE_LONG,
2509 PROCFLAG.DATATYPE_LONG,
2510 PROCFLAG.DATATYPE_INT64,
2510 PROCFLAG.DATATYPE_INT64,
2511 PROCFLAG.DATATYPE_FLOAT,
2511 PROCFLAG.DATATYPE_FLOAT,
2512 PROCFLAG.DATATYPE_DOUBLE]
2512 PROCFLAG.DATATYPE_DOUBLE]
2513
2513
2514
2514
2515 for index in range(len(dtypeList)):
2515 for index in range(len(dtypeList)):
2516 if self.dataOut.dtype == dtypeList[index]:
2516 if self.dataOut.dtype == dtypeList[index]:
2517 dtypeValue = datatypeValueList[index]
2517 dtypeValue = datatypeValueList[index]
2518 break
2518 break
2519
2519
2520 processFlags += dtypeValue
2520 processFlags += dtypeValue
2521
2521
2522 if self.dataOut.flagDecodeData:
2522 if self.dataOut.flagDecodeData:
2523 processFlags += PROCFLAG.DECODE_DATA
2523 processFlags += PROCFLAG.DECODE_DATA
2524
2524
2525 if self.dataOut.flagDeflipData:
2525 if self.dataOut.flagDeflipData:
2526 processFlags += PROCFLAG.DEFLIP_DATA
2526 processFlags += PROCFLAG.DEFLIP_DATA
2527
2527
2528 if self.dataOut.code != None:
2528 if self.dataOut.code != None:
2529 processFlags += PROCFLAG.DEFINE_PROCESS_CODE
2529 processFlags += PROCFLAG.DEFINE_PROCESS_CODE
2530
2530
2531 if self.dataOut.nIncohInt > 1:
2531 if self.dataOut.nIncohInt > 1:
2532 processFlags += PROCFLAG.INCOHERENT_INTEGRATION
2532 processFlags += PROCFLAG.INCOHERENT_INTEGRATION
2533
2533
2534 if self.dataOut.data_dc != None:
2534 if self.dataOut.data_dc != None:
2535 processFlags += PROCFLAG.SAVE_CHANNELS_DC
2535 processFlags += PROCFLAG.SAVE_CHANNELS_DC
2536
2536
2537 return processFlags
2537 return processFlags
2538
2538
2539
2539
2540 def __getBlockSize(self):
2540 def __getBlockSize(self):
2541 '''
2541 '''
2542 Este metodos determina el cantidad de bytes para un bloque de datos de tipo Spectra
2542 Este metodos determina el cantidad de bytes para un bloque de datos de tipo Spectra
2543 '''
2543 '''
2544
2544
2545 dtype0 = numpy.dtype([('real','<i1'),('imag','<i1')])
2545 dtype0 = numpy.dtype([('real','<i1'),('imag','<i1')])
2546 dtype1 = numpy.dtype([('real','<i2'),('imag','<i2')])
2546 dtype1 = numpy.dtype([('real','<i2'),('imag','<i2')])
2547 dtype2 = numpy.dtype([('real','<i4'),('imag','<i4')])
2547 dtype2 = numpy.dtype([('real','<i4'),('imag','<i4')])
2548 dtype3 = numpy.dtype([('real','<i8'),('imag','<i8')])
2548 dtype3 = numpy.dtype([('real','<i8'),('imag','<i8')])
2549 dtype4 = numpy.dtype([('real','<f4'),('imag','<f4')])
2549 dtype4 = numpy.dtype([('real','<f4'),('imag','<f4')])
2550 dtype5 = numpy.dtype([('real','<f8'),('imag','<f8')])
2550 dtype5 = numpy.dtype([('real','<f8'),('imag','<f8')])
2551
2551
2552 dtypeList = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5]
2552 dtypeList = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5]
2553 datatypeValueList = [1,2,4,8,4,8]
2553 datatypeValueList = [1,2,4,8,4,8]
2554 for index in range(len(dtypeList)):
2554 for index in range(len(dtypeList)):
2555 if self.dataOut.dtype == dtypeList[index]:
2555 if self.dataOut.dtype == dtypeList[index]:
2556 datatypeValue = datatypeValueList[index]
2556 datatypeValue = datatypeValueList[index]
2557 break
2557 break
2558
2558
2559
2559
2560 pts2write = self.dataOut.nHeights * self.dataOut.nFFTPoints
2560 pts2write = self.dataOut.nHeights * self.dataOut.nFFTPoints
2561
2561
2562 pts2write_SelfSpectra = int(self.dataOut.nChannels * pts2write)
2562 pts2write_SelfSpectra = int(self.dataOut.nChannels * pts2write)
2563 blocksize = (pts2write_SelfSpectra*datatypeValue)
2563 blocksize = (pts2write_SelfSpectra*datatypeValue)
2564
2564
2565 if self.dataOut.data_cspc != None:
2565 if self.dataOut.data_cspc != None:
2566 pts2write_CrossSpectra = int(self.dataOut.nPairs * pts2write)
2566 pts2write_CrossSpectra = int(self.dataOut.nPairs * pts2write)
2567 blocksize += (pts2write_CrossSpectra*datatypeValue*2)
2567 blocksize += (pts2write_CrossSpectra*datatypeValue*2)
2568
2568
2569 if self.dataOut.data_dc != None:
2569 if self.dataOut.data_dc != None:
2570 pts2write_DCchannels = int(self.dataOut.nChannels * self.dataOut.nHeights)
2570 pts2write_DCchannels = int(self.dataOut.nChannels * self.dataOut.nHeights)
2571 blocksize += (pts2write_DCchannels*datatypeValue*2)
2571 blocksize += (pts2write_DCchannels*datatypeValue*2)
2572
2572
2573 blocksize = blocksize #* datatypeValue * 2 #CORREGIR ESTO
2573 blocksize = blocksize #* datatypeValue * 2 #CORREGIR ESTO
2574
2574
2575 return blocksize
2575 return blocksize
2576
2576
2577 def setFirstHeader(self):
2577 def setFirstHeader(self):
2578
2578
2579 """
2579 """
2580 Obtiene una copia del First Header
2580 Obtiene una copia del First Header
2581
2581
2582 Affected:
2582 Affected:
2583 self.systemHeaderObj
2583 self.systemHeaderObj
2584 self.radarControllerHeaderObj
2584 self.radarControllerHeaderObj
2585 self.dtype
2585 self.dtype
2586
2586
2587 Return:
2587 Return:
2588 None
2588 None
2589 """
2589 """
2590
2590
2591 self.systemHeaderObj = self.dataOut.systemHeaderObj.copy()
2591 self.systemHeaderObj = self.dataOut.systemHeaderObj.copy()
2592 self.systemHeaderObj.nChannels = self.dataOut.nChannels
2592 self.systemHeaderObj.nChannels = self.dataOut.nChannels
2593 self.radarControllerHeaderObj = self.dataOut.radarControllerHeaderObj.copy()
2593 self.radarControllerHeaderObj = self.dataOut.radarControllerHeaderObj.copy()
2594
2594
2595 self.setBasicHeader()
2595 self.setBasicHeader()
2596
2596
2597 processingHeaderSize = 40 # bytes
2597 processingHeaderSize = 40 # bytes
2598 self.processingHeaderObj.dtype = 1 # Spectra
2598 self.processingHeaderObj.dtype = 1 # Spectra
2599 self.processingHeaderObj.blockSize = self.__getBlockSize()
2599 self.processingHeaderObj.blockSize = self.__getBlockSize()
2600 self.processingHeaderObj.profilesPerBlock = self.dataOut.nFFTPoints
2600 self.processingHeaderObj.profilesPerBlock = self.dataOut.nFFTPoints
2601 self.processingHeaderObj.dataBlocksPerFile = self.blocksPerFile
2601 self.processingHeaderObj.dataBlocksPerFile = self.blocksPerFile
2602 self.processingHeaderObj.nWindows = 1 #podria ser 1 o self.dataOut.processingHeaderObj.nWindows
2602 self.processingHeaderObj.nWindows = 1 #podria ser 1 o self.dataOut.processingHeaderObj.nWindows
2603 self.processingHeaderObj.processFlags = self.__getProcessFlags()
2603 self.processingHeaderObj.processFlags = self.__getProcessFlags()
2604 self.processingHeaderObj.nCohInt = self.dataOut.nCohInt# Se requiere para determinar el valor de timeInterval
2604 self.processingHeaderObj.nCohInt = self.dataOut.nCohInt# Se requiere para determinar el valor de timeInterval
2605 self.processingHeaderObj.nIncohInt = self.dataOut.nIncohInt
2605 self.processingHeaderObj.nIncohInt = self.dataOut.nIncohInt
2606 self.processingHeaderObj.totalSpectra = self.dataOut.nPairs + self.dataOut.nChannels
2606 self.processingHeaderObj.totalSpectra = self.dataOut.nPairs + self.dataOut.nChannels
2607 self.processingHeaderObj.shif_fft = self.dataOut.flagShiftFFT
2607 self.processingHeaderObj.shif_fft = self.dataOut.flagShiftFFT
2608
2608
2609 if self.processingHeaderObj.totalSpectra > 0:
2609 if self.processingHeaderObj.totalSpectra > 0:
2610 channelList = []
2610 channelList = []
2611 for channel in range(self.dataOut.nChannels):
2611 for channel in range(self.dataOut.nChannels):
2612 channelList.append(channel)
2612 channelList.append(channel)
2613 channelList.append(channel)
2613 channelList.append(channel)
2614
2614
2615 pairsList = []
2615 pairsList = []
2616 if self.dataOut.nPairs > 0:
2616 if self.dataOut.nPairs > 0:
2617 for pair in self.dataOut.pairsList:
2617 for pair in self.dataOut.pairsList:
2618 pairsList.append(pair[0])
2618 pairsList.append(pair[0])
2619 pairsList.append(pair[1])
2619 pairsList.append(pair[1])
2620
2620
2621 spectraComb = channelList + pairsList
2621 spectraComb = channelList + pairsList
2622 spectraComb = numpy.array(spectraComb,dtype="u1")
2622 spectraComb = numpy.array(spectraComb,dtype="u1")
2623 self.processingHeaderObj.spectraComb = spectraComb
2623 self.processingHeaderObj.spectraComb = spectraComb
2624 sizeOfSpcComb = len(spectraComb)
2624 sizeOfSpcComb = len(spectraComb)
2625 processingHeaderSize += sizeOfSpcComb
2625 processingHeaderSize += sizeOfSpcComb
2626
2626
2627 # The processing header should not have information about code
2627 # The processing header should not have information about code
2628 # if self.dataOut.code != None:
2628 # if self.dataOut.code != None:
2629 # self.processingHeaderObj.code = self.dataOut.code
2629 # self.processingHeaderObj.code = self.dataOut.code
2630 # self.processingHeaderObj.nCode = self.dataOut.nCode
2630 # self.processingHeaderObj.nCode = self.dataOut.nCode
2631 # self.processingHeaderObj.nBaud = self.dataOut.nBaud
2631 # self.processingHeaderObj.nBaud = self.dataOut.nBaud
2632 # nCodeSize = 4 # bytes
2632 # nCodeSize = 4 # bytes
2633 # nBaudSize = 4 # bytes
2633 # nBaudSize = 4 # bytes
2634 # codeSize = 4 # bytes
2634 # codeSize = 4 # bytes
2635 # sizeOfCode = int(nCodeSize + nBaudSize + codeSize * self.dataOut.nCode * self.dataOut.nBaud)
2635 # sizeOfCode = int(nCodeSize + nBaudSize + codeSize * self.dataOut.nCode * self.dataOut.nBaud)
2636 # processingHeaderSize += sizeOfCode
2636 # processingHeaderSize += sizeOfCode
2637
2637
2638 if self.processingHeaderObj.nWindows != 0:
2638 if self.processingHeaderObj.nWindows != 0:
2639 self.processingHeaderObj.firstHeight = self.dataOut.heightList[0]
2639 self.processingHeaderObj.firstHeight = self.dataOut.heightList[0]
2640 self.processingHeaderObj.deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
2640 self.processingHeaderObj.deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
2641 self.processingHeaderObj.nHeights = self.dataOut.nHeights
2641 self.processingHeaderObj.nHeights = self.dataOut.nHeights
2642 self.processingHeaderObj.samplesWin = self.dataOut.nHeights
2642 self.processingHeaderObj.samplesWin = self.dataOut.nHeights
2643 sizeOfFirstHeight = 4
2643 sizeOfFirstHeight = 4
2644 sizeOfdeltaHeight = 4
2644 sizeOfdeltaHeight = 4
2645 sizeOfnHeights = 4
2645 sizeOfnHeights = 4
2646 sizeOfWindows = (sizeOfFirstHeight + sizeOfdeltaHeight + sizeOfnHeights)*self.processingHeaderObj.nWindows
2646 sizeOfWindows = (sizeOfFirstHeight + sizeOfdeltaHeight + sizeOfnHeights)*self.processingHeaderObj.nWindows
2647 processingHeaderSize += sizeOfWindows
2647 processingHeaderSize += sizeOfWindows
2648
2648
2649 self.processingHeaderObj.size = processingHeaderSize
2649 self.processingHeaderObj.size = processingHeaderSize
2650
2650
2651 class SpectraHeisWriter(Operation):
2651 class SpectraHeisWriter(Operation):
2652 # set = None
2652 # set = None
2653 setFile = None
2653 setFile = None
2654 idblock = None
2654 idblock = None
2655 doypath = None
2655 doypath = None
2656 subfolder = None
2656 subfolder = None
2657
2657
2658 def __init__(self):
2658 def __init__(self):
2659 self.wrObj = FITS()
2659 self.wrObj = FITS()
2660 # self.dataOut = dataOut
2660 # self.dataOut = dataOut
2661 self.nTotalBlocks=0
2661 self.nTotalBlocks=0
2662 # self.set = None
2662 # self.set = None
2663 self.setFile = None
2663 self.setFile = None
2664 self.idblock = 0
2664 self.idblock = 0
2665 self.wrpath = None
2665 self.wrpath = None
2666 self.doypath = None
2666 self.doypath = None
2667 self.subfolder = None
2667 self.subfolder = None
2668 self.isConfig = False
2668 self.isConfig = False
2669
2669
2670 def isNumber(str):
2670 def isNumber(str):
2671 """
2671 """
2672 Chequea si el conjunto de caracteres que componen un string puede ser convertidos a un numero.
2672 Chequea si el conjunto de caracteres que componen un string puede ser convertidos a un numero.
2673
2673
2674 Excepciones:
2674 Excepciones:
2675 Si un determinado string no puede ser convertido a numero
2675 Si un determinado string no puede ser convertido a numero
2676 Input:
2676 Input:
2677 str, string al cual se le analiza para determinar si convertible a un numero o no
2677 str, string al cual se le analiza para determinar si convertible a un numero o no
2678
2678
2679 Return:
2679 Return:
2680 True : si el string es uno numerico
2680 True : si el string es uno numerico
2681 False : no es un string numerico
2681 False : no es un string numerico
2682 """
2682 """
2683 try:
2683 try:
2684 float( str )
2684 float( str )
2685 return True
2685 return True
2686 except:
2686 except:
2687 return False
2687 return False
2688
2688
2689 def setup(self, dataOut, wrpath):
2689 def setup(self, dataOut, wrpath):
2690
2690
2691 if not(os.path.exists(wrpath)):
2691 if not(os.path.exists(wrpath)):
2692 os.mkdir(wrpath)
2692 os.mkdir(wrpath)
2693
2693
2694 self.wrpath = wrpath
2694 self.wrpath = wrpath
2695 # self.setFile = 0
2695 # self.setFile = 0
2696 self.dataOut = dataOut
2696 self.dataOut = dataOut
2697
2697
2698 def putData(self):
2698 def putData(self):
2699 name= time.localtime( self.dataOut.utctime)
2699 name= time.localtime( self.dataOut.utctime)
2700 ext=".fits"
2700 ext=".fits"
2701
2701
2702 if self.doypath == None:
2702 if self.doypath == None:
2703 self.subfolder = 'F%4.4d%3.3d_%d' % (name.tm_year,name.tm_yday,time.mktime(datetime.datetime.now().timetuple()))
2703 self.subfolder = 'F%4.4d%3.3d_%d' % (name.tm_year,name.tm_yday,time.mktime(datetime.datetime.now().timetuple()))
2704 self.doypath = os.path.join( self.wrpath, self.subfolder )
2704 self.doypath = os.path.join( self.wrpath, self.subfolder )
2705 os.mkdir(self.doypath)
2705 os.mkdir(self.doypath)
2706
2706
2707 if self.setFile == None:
2707 if self.setFile == None:
2708 # self.set = self.dataOut.set
2708 # self.set = self.dataOut.set
2709 self.setFile = 0
2709 self.setFile = 0
2710 # if self.set != self.dataOut.set:
2710 # if self.set != self.dataOut.set:
2711 ## self.set = self.dataOut.set
2711 ## self.set = self.dataOut.set
2712 # self.setFile = 0
2712 # self.setFile = 0
2713
2713
2714 #make the filename
2714 #make the filename
2715 file = 'D%4.4d%3.3d_%3.3d%s' % (name.tm_year,name.tm_yday,self.setFile,ext)
2715 file = 'D%4.4d%3.3d_%3.3d%s' % (name.tm_year,name.tm_yday,self.setFile,ext)
2716
2716
2717 filename = os.path.join(self.wrpath,self.subfolder, file)
2717 filename = os.path.join(self.wrpath,self.subfolder, file)
2718
2718
2719 idblock = numpy.array([self.idblock],dtype="int64")
2719 idblock = numpy.array([self.idblock],dtype="int64")
2720 header=self.wrObj.cFImage(idblock=idblock,
2720 header=self.wrObj.cFImage(idblock=idblock,
2721 year=time.gmtime(self.dataOut.utctime).tm_year,
2721 year=time.gmtime(self.dataOut.utctime).tm_year,
2722 month=time.gmtime(self.dataOut.utctime).tm_mon,
2722 month=time.gmtime(self.dataOut.utctime).tm_mon,
2723 day=time.gmtime(self.dataOut.utctime).tm_mday,
2723 day=time.gmtime(self.dataOut.utctime).tm_mday,
2724 hour=time.gmtime(self.dataOut.utctime).tm_hour,
2724 hour=time.gmtime(self.dataOut.utctime).tm_hour,
2725 minute=time.gmtime(self.dataOut.utctime).tm_min,
2725 minute=time.gmtime(self.dataOut.utctime).tm_min,
2726 second=time.gmtime(self.dataOut.utctime).tm_sec)
2726 second=time.gmtime(self.dataOut.utctime).tm_sec)
2727
2727
2728 c=3E8
2728 c=3E8
2729 deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
2729 deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
2730 freq=numpy.arange(-1*self.dataOut.nHeights/2.,self.dataOut.nHeights/2.)*(c/(2*deltaHeight*1000))
2730 freq=numpy.arange(-1*self.dataOut.nHeights/2.,self.dataOut.nHeights/2.)*(c/(2*deltaHeight*1000))
2731
2731
2732 colList = []
2732 colList = []
2733
2733
2734 colFreq=self.wrObj.setColF(name="freq", format=str(self.dataOut.nFFTPoints)+'E', array=freq)
2734 colFreq=self.wrObj.setColF(name="freq", format=str(self.dataOut.nFFTPoints)+'E', array=freq)
2735
2735
2736 colList.append(colFreq)
2736 colList.append(colFreq)
2737
2737
2738 nchannel=self.dataOut.nChannels
2738 nchannel=self.dataOut.nChannels
2739
2739
2740 for i in range(nchannel):
2740 for i in range(nchannel):
2741 col = self.wrObj.writeData(name="PCh"+str(i+1),
2741 col = self.wrObj.writeData(name="PCh"+str(i+1),
2742 format=str(self.dataOut.nFFTPoints)+'E',
2742 format=str(self.dataOut.nFFTPoints)+'E',
2743 data=10*numpy.log10(self.dataOut.data_spc[i,:]))
2743 data=10*numpy.log10(self.dataOut.data_spc[i,:]))
2744
2744
2745 colList.append(col)
2745 colList.append(col)
2746
2746
2747 data=self.wrObj.Ctable(colList=colList)
2747 data=self.wrObj.Ctable(colList=colList)
2748
2748
2749 self.wrObj.CFile(header,data)
2749 self.wrObj.CFile(header,data)
2750
2750
2751 self.wrObj.wFile(filename)
2751 self.wrObj.wFile(filename)
2752
2752
2753 #update the setFile
2753 #update the setFile
2754 self.setFile += 1
2754 self.setFile += 1
2755 self.idblock += 1
2755 self.idblock += 1
2756
2756
2757 return 1
2757 return 1
2758
2758
2759 def run(self, dataOut, **kwargs):
2759 def run(self, dataOut, **kwargs):
2760
2760
2761 if not(self.isConfig):
2761 if not(self.isConfig):
2762
2762
2763 self.setup(dataOut, **kwargs)
2763 self.setup(dataOut, **kwargs)
2764 self.isConfig = True
2764 self.isConfig = True
2765
2765
2766 self.putData()
2766 self.putData()
2767
2767
2768
2768
2769 class FITS:
2770 name=None
2771 format=None
2772 array =None
2773 data =None
2774 thdulist=None
2775 prihdr=None
2776 hdu=None
2777
2778 def __init__(self):
2779
2780 pass
2781
2782 def setColF(self,name,format,array):
2783 self.name=name
2784 self.format=format
2785 self.array=array
2786 a1=numpy.array([self.array],dtype=numpy.float32)
2787 self.col1 = pyfits.Column(name=self.name, format=self.format, array=a1)
2788 return self.col1
2789
2790 # def setColP(self,name,format,data):
2791 # self.name=name
2792 # self.format=format
2793 # self.data=data
2794 # a2=numpy.array([self.data],dtype=numpy.float32)
2795 # self.col2 = pyfits.Column(name=self.name, format=self.format, array=a2)
2796 # return self.col2
2797
2798
2799 def writeData(self,name,format,data):
2800 self.name=name
2801 self.format=format
2802 self.data=data
2803 a2=numpy.array([self.data],dtype=numpy.float32)
2804 self.col2 = pyfits.Column(name=self.name, format=self.format, array=a2)
2805 return self.col2
2806
2807 def cFImage(self,idblock,year,month,day,hour,minute,second):
2808 self.hdu= pyfits.PrimaryHDU(idblock)
2809 self.hdu.header.set("Year",year)
2810 self.hdu.header.set("Month",month)
2811 self.hdu.header.set("Day",day)
2812 self.hdu.header.set("Hour",hour)
2813 self.hdu.header.set("Minute",minute)
2814 self.hdu.header.set("Second",second)
2815 return self.hdu
2816
2817
2818 def Ctable(self,colList):
2819 self.cols=pyfits.ColDefs(colList)
2820 self.tbhdu = pyfits.new_table(self.cols)
2821 return self.tbhdu
2822
2823
2824 def CFile(self,hdu,tbhdu):
2825 self.thdulist=pyfits.HDUList([hdu,tbhdu])
2826
2827 def wFile(self,filename):
2828 if os.path.isfile(filename):
2829 os.remove(filename)
2830 self.thdulist.writeto(filename)
2831
2832
2769
2833 class ParameterConf:
2770 class ParameterConf:
2834 ELEMENTNAME = 'Parameter'
2771 ELEMENTNAME = 'Parameter'
2835 def __init__(self):
2772 def __init__(self):
2836 self.name = ''
2773 self.name = ''
2837 self.value = ''
2774 self.value = ''
2838
2775
2839 def readXml(self, parmElement):
2776 def readXml(self, parmElement):
2840 self.name = parmElement.get('name')
2777 self.name = parmElement.get('name')
2841 self.value = parmElement.get('value')
2778 self.value = parmElement.get('value')
2842
2779
2843 def getElementName(self):
2780 def getElementName(self):
2844 return self.ELEMENTNAME
2781 return self.ELEMENTNAME
2845
2782
2846 class Metadata:
2783 class Metadata:
2847
2784
2848 def __init__(self, filename):
2785 def __init__(self, filename):
2849 self.parmConfObjList = []
2786 self.parmConfObjList = []
2850 self.readXml(filename)
2787 self.readXml(filename)
2851
2788
2852 def readXml(self, filename):
2789 def readXml(self, filename):
2853 self.projectElement = None
2790 self.projectElement = None
2854 self.procUnitConfObjDict = {}
2791 self.procUnitConfObjDict = {}
2855 self.projectElement = ElementTree().parse(filename)
2792 self.projectElement = ElementTree().parse(filename)
2856 self.project = self.projectElement.tag
2793 self.project = self.projectElement.tag
2857
2794
2858 parmElementList = self.projectElement.getiterator(ParameterConf().getElementName())
2795 parmElementList = self.projectElement.getiterator(ParameterConf().getElementName())
2859
2796
2860 for parmElement in parmElementList:
2797 for parmElement in parmElementList:
2861 parmConfObj = ParameterConf()
2798 parmConfObj = ParameterConf()
2862 parmConfObj.readXml(parmElement)
2799 parmConfObj.readXml(parmElement)
2863 self.parmConfObjList.append(parmConfObj)
2800 self.parmConfObjList.append(parmConfObj)
2864
2801
2865 class FitsWriter(Operation):
2802 class FitsWriter(Operation):
2866
2803
2867 def __init__(self):
2804 def __init__(self):
2868 self.isConfig = False
2805 self.isConfig = False
2869 self.dataBlocksPerFile = None
2806 self.dataBlocksPerFile = None
2870 self.blockIndex = 0
2807 self.blockIndex = 0
2871 self.flagIsNewFile = 1
2808 self.flagIsNewFile = 1
2872 self.fitsObj = None
2809 self.fitsObj = None
2873 self.optchar = 'P'
2810 self.optchar = 'P'
2874 self.ext = '.fits'
2811 self.ext = '.fits'
2875 self.setFile = 0
2812 self.setFile = 0
2876
2813
2877 def setFitsHeader(self, dataOut, metadatafile):
2814 def setFitsHeader(self, dataOut, metadatafile):
2878
2815
2879 header_data = pyfits.PrimaryHDU()
2816 header_data = pyfits.PrimaryHDU()
2880
2817
2881 metadata4fits = Metadata(metadatafile)
2818 metadata4fits = Metadata(metadatafile)
2882 for parameter in metadata4fits.parmConfObjList:
2819 for parameter in metadata4fits.parmConfObjList:
2883 parm_name = parameter.name
2820 parm_name = parameter.name
2884 parm_value = parameter.value
2821 parm_value = parameter.value
2885
2822
2886 # if parm_value == 'fromdatadatetime':
2823 # if parm_value == 'fromdatadatetime':
2887 # value = time.strftime("%b %d %Y %H:%M:%S", dataOut.datatime.timetuple())
2824 # value = time.strftime("%b %d %Y %H:%M:%S", dataOut.datatime.timetuple())
2888 # elif parm_value == 'fromdataheights':
2825 # elif parm_value == 'fromdataheights':
2889 # value = dataOut.nHeights
2826 # value = dataOut.nHeights
2890 # elif parm_value == 'fromdatachannel':
2827 # elif parm_value == 'fromdatachannel':
2891 # value = dataOut.nChannels
2828 # value = dataOut.nChannels
2892 # elif parm_value == 'fromdatasamples':
2829 # elif parm_value == 'fromdatasamples':
2893 # value = dataOut.nFFTPoints
2830 # value = dataOut.nFFTPoints
2894 # else:
2831 # else:
2895 # value = parm_value
2832 # value = parm_value
2896
2833
2897 header_data.header[parm_name] = parm_value
2834 header_data.header[parm_name] = parm_value
2898
2835
2899
2836
2900 header_data.header['DATETIME'] = time.strftime("%b %d %Y %H:%M:%S", dataOut.datatime.timetuple())
2837 header_data.header['DATETIME'] = time.strftime("%b %d %Y %H:%M:%S", dataOut.datatime.timetuple())
2901 header_data.header['CHANNELLIST'] = str(dataOut.channelList)
2838 header_data.header['CHANNELLIST'] = str(dataOut.channelList)
2902 header_data.header['NCHANNELS'] = dataOut.nChannels
2839 header_data.header['NCHANNELS'] = dataOut.nChannels
2903 #header_data.header['HEIGHTS'] = dataOut.heightList
2840 #header_data.header['HEIGHTS'] = dataOut.heightList
2904 header_data.header['NHEIGHTS'] = dataOut.nHeights
2841 header_data.header['NHEIGHTS'] = dataOut.nHeights
2905
2842
2906 header_data.header['IPPSECONDS'] = dataOut.ippSeconds
2843 header_data.header['IPPSECONDS'] = dataOut.ippSeconds
2907 header_data.header['NCOHINT'] = dataOut.nCohInt
2844 header_data.header['NCOHINT'] = dataOut.nCohInt
2908 header_data.header['NINCOHINT'] = dataOut.nIncohInt
2845 header_data.header['NINCOHINT'] = dataOut.nIncohInt
2909 header_data.header['TIMEZONE'] = dataOut.timeZone
2846 header_data.header['TIMEZONE'] = dataOut.timeZone
2910 header_data.header['NBLOCK'] = self.blockIndex
2847 header_data.header['NBLOCK'] = self.blockIndex
2911
2848
2912 header_data.writeto(self.filename)
2849 header_data.writeto(self.filename)
2913
2850
2914 self.addExtension(dataOut.heightList,'HEIGHTLIST')
2851 self.addExtension(dataOut.heightList,'HEIGHTLIST')
2915
2852
2916
2853
2917 def setup(self, dataOut, path, dataBlocksPerFile, metadatafile):
2854 def setup(self, dataOut, path, dataBlocksPerFile, metadatafile):
2918
2855
2919 self.path = path
2856 self.path = path
2920 self.dataOut = dataOut
2857 self.dataOut = dataOut
2921 self.metadatafile = metadatafile
2858 self.metadatafile = metadatafile
2922 self.dataBlocksPerFile = dataBlocksPerFile
2859 self.dataBlocksPerFile = dataBlocksPerFile
2923
2860
2924 def open(self):
2861 def open(self):
2925 self.fitsObj = pyfits.open(self.filename, mode='update')
2862 self.fitsObj = pyfits.open(self.filename, mode='update')
2926
2863
2927
2864
2928 def addExtension(self, data, tagname):
2865 def addExtension(self, data, tagname):
2929 self.open()
2866 self.open()
2930 extension = pyfits.ImageHDU(data=data, name=tagname)
2867 extension = pyfits.ImageHDU(data=data, name=tagname)
2931 #extension.header['TAG'] = tagname
2868 #extension.header['TAG'] = tagname
2932 self.fitsObj.append(extension)
2869 self.fitsObj.append(extension)
2933 self.write()
2870 self.write()
2934
2871
2935 def addData(self, data):
2872 def addData(self, data):
2936 self.open()
2873 self.open()
2937 extension = pyfits.ImageHDU(data=data, name=self.fitsObj[0].header['DATATYPE'])
2874 extension = pyfits.ImageHDU(data=data, name=self.fitsObj[0].header['DATATYPE'])
2938 extension.header['UTCTIME'] = self.dataOut.utctime
2875 extension.header['UTCTIME'] = self.dataOut.utctime
2939 self.fitsObj.append(extension)
2876 self.fitsObj.append(extension)
2940 self.blockIndex += 1
2877 self.blockIndex += 1
2941 self.fitsObj[0].header['NBLOCK'] = self.blockIndex
2878 self.fitsObj[0].header['NBLOCK'] = self.blockIndex
2942
2879
2943 self.write()
2880 self.write()
2944
2881
2945 def write(self):
2882 def write(self):
2946
2883
2947 self.fitsObj.flush(verbose=True)
2884 self.fitsObj.flush(verbose=True)
2948 self.fitsObj.close()
2885 self.fitsObj.close()
2949
2886
2950
2887
2951 def setNextFile(self):
2888 def setNextFile(self):
2952
2889
2953 ext = self.ext
2890 ext = self.ext
2954 path = self.path
2891 path = self.path
2955
2892
2956 timeTuple = time.localtime( self.dataOut.utctime)
2893 timeTuple = time.localtime( self.dataOut.utctime)
2957 subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday)
2894 subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday)
2958
2895
2959 fullpath = os.path.join( path, subfolder )
2896 fullpath = os.path.join( path, subfolder )
2960 if not( os.path.exists(fullpath) ):
2897 if not( os.path.exists(fullpath) ):
2961 os.mkdir(fullpath)
2898 os.mkdir(fullpath)
2962 self.setFile = -1 #inicializo mi contador de seteo
2899 self.setFile = -1 #inicializo mi contador de seteo
2963 else:
2900 else:
2964 filesList = os.listdir( fullpath )
2901 filesList = os.listdir( fullpath )
2965 if len( filesList ) > 0:
2902 if len( filesList ) > 0:
2966 filesList = sorted( filesList, key=str.lower )
2903 filesList = sorted( filesList, key=str.lower )
2967 filen = filesList[-1]
2904 filen = filesList[-1]
2968
2905
2969 if isNumber( filen[8:11] ):
2906 if isNumber( filen[8:11] ):
2970 self.setFile = int( filen[8:11] ) #inicializo mi contador de seteo al seteo del ultimo file
2907 self.setFile = int( filen[8:11] ) #inicializo mi contador de seteo al seteo del ultimo file
2971 else:
2908 else:
2972 self.setFile = -1
2909 self.setFile = -1
2973 else:
2910 else:
2974 self.setFile = -1 #inicializo mi contador de seteo
2911 self.setFile = -1 #inicializo mi contador de seteo
2975
2912
2976 setFile = self.setFile
2913 setFile = self.setFile
2977 setFile += 1
2914 setFile += 1
2978
2915
2979 file = '%s%4.4d%3.3d%3.3d%s' % (self.optchar,
2916 file = '%s%4.4d%3.3d%3.3d%s' % (self.optchar,
2980 timeTuple.tm_year,
2917 timeTuple.tm_year,
2981 timeTuple.tm_yday,
2918 timeTuple.tm_yday,
2982 setFile,
2919 setFile,
2983 ext )
2920 ext )
2984
2921
2985 filename = os.path.join( path, subfolder, file )
2922 filename = os.path.join( path, subfolder, file )
2986
2923
2987 self.blockIndex = 0
2924 self.blockIndex = 0
2988 self.filename = filename
2925 self.filename = filename
2989 self.setFile = setFile
2926 self.setFile = setFile
2990 self.flagIsNewFile = 1
2927 self.flagIsNewFile = 1
2991
2928
2992 print 'Writing the file: %s'%self.filename
2929 print 'Writing the file: %s'%self.filename
2993
2930
2994 self.setFitsHeader(self.dataOut, self.metadatafile)
2931 self.setFitsHeader(self.dataOut, self.metadatafile)
2995
2932
2996 return 1
2933 return 1
2997
2934
2998 def writeBlock(self):
2935 def writeBlock(self):
2999 self.addData(self.dataOut.data_spc)
2936 self.addData(self.dataOut.data_spc)
3000 self.flagIsNewFile = 0
2937 self.flagIsNewFile = 0
3001
2938
3002
2939
3003 def __setNewBlock(self):
2940 def __setNewBlock(self):
3004
2941
3005 if self.flagIsNewFile:
2942 if self.flagIsNewFile:
3006 return 1
2943 return 1
3007
2944
3008 if self.blockIndex < self.dataBlocksPerFile:
2945 if self.blockIndex < self.dataBlocksPerFile:
3009 return 1
2946 return 1
3010
2947
3011 if not( self.setNextFile() ):
2948 if not( self.setNextFile() ):
3012 return 0
2949 return 0
3013
2950
3014 return 1
2951 return 1
3015
2952
3016 def writeNextBlock(self):
2953 def writeNextBlock(self):
3017 if not( self.__setNewBlock() ):
2954 if not( self.__setNewBlock() ):
3018 return 0
2955 return 0
3019 self.writeBlock()
2956 self.writeBlock()
3020 return 1
2957 return 1
3021
2958
3022 def putData(self):
2959 def putData(self):
3023 if self.flagIsNewFile:
2960 if self.flagIsNewFile:
3024 self.setNextFile()
2961 self.setNextFile()
3025 self.writeNextBlock()
2962 self.writeNextBlock()
3026
2963
3027 def run(self, dataOut, **kwargs):
2964 def run(self, dataOut, **kwargs):
3028 if not(self.isConfig):
2965 if not(self.isConfig):
3029 self.setup(dataOut, **kwargs)
2966 self.setup(dataOut, **kwargs)
3030 self.isConfig = True
2967 self.isConfig = True
3031 self.putData()
2968 self.putData()
3032
2969
3033
2970
3034 class FitsReader(ProcessingUnit):
2971 class FitsReader(ProcessingUnit):
3035
2972
3036 # __TIMEZONE = time.timezone
2973 # __TIMEZONE = time.timezone
3037
2974
3038 expName = None
2975 expName = None
3039 datetimestr = None
2976 datetimestr = None
3040 utc = None
2977 utc = None
3041 nChannels = None
2978 nChannels = None
3042 nSamples = None
2979 nSamples = None
3043 dataBlocksPerFile = None
2980 dataBlocksPerFile = None
3044 comments = None
2981 comments = None
3045 lastUTTime = None
2982 lastUTTime = None
3046 header_dict = None
2983 header_dict = None
3047 data = None
2984 data = None
3048 data_header_dict = None
2985 data_header_dict = None
3049
2986
3050 def __init__(self):
2987 def __init__(self):
3051 self.isConfig = False
2988 self.isConfig = False
3052 self.ext = '.fits'
2989 self.ext = '.fits'
3053 self.setFile = 0
2990 self.setFile = 0
3054 self.flagNoMoreFiles = 0
2991 self.flagNoMoreFiles = 0
3055 self.flagIsNewFile = 1
2992 self.flagIsNewFile = 1
3056 self.flagTimeBlock = None
2993 self.flagTimeBlock = None
3057 self.fileIndex = None
2994 self.fileIndex = None
3058 self.filename = None
2995 self.filename = None
3059 self.fileSize = None
2996 self.fileSize = None
3060 self.fitsObj = None
2997 self.fitsObj = None
3061 self.timeZone = None
2998 self.timeZone = None
3062 self.nReadBlocks = 0
2999 self.nReadBlocks = 0
3063 self.nTotalBlocks = 0
3000 self.nTotalBlocks = 0
3064 self.dataOut = self.createObjByDefault()
3001 self.dataOut = self.createObjByDefault()
3065 self.maxTimeStep = 10# deberia ser definido por el usuario usando el metodo setup()
3002 self.maxTimeStep = 10# deberia ser definido por el usuario usando el metodo setup()
3066 self.blockIndex = 1
3003 self.blockIndex = 1
3067
3004
3068 def createObjByDefault(self):
3005 def createObjByDefault(self):
3069
3006
3070 dataObj = Fits()
3007 dataObj = Fits()
3071
3008
3072 return dataObj
3009 return dataObj
3073
3010
3074 def isFileinThisTime(self, filename, startTime, endTime, useLocalTime=False):
3011 def isFileinThisTime(self, filename, startTime, endTime, useLocalTime=False):
3075 try:
3012 try:
3076 fitsObj = pyfits.open(filename,'readonly')
3013 fitsObj = pyfits.open(filename,'readonly')
3077 except:
3014 except:
3078 raise IOError, "The file %s can't be opened" %(filename)
3015 raise IOError, "The file %s can't be opened" %(filename)
3079
3016
3080 header = fitsObj[0].header
3017 header = fitsObj[0].header
3081 struct_time = time.strptime(header['DATETIME'], "%b %d %Y %H:%M:%S")
3018 struct_time = time.strptime(header['DATETIME'], "%b %d %Y %H:%M:%S")
3082 utc = time.mktime(struct_time) - time.timezone #TIMEZONE debe ser un parametro del header FITS
3019 utc = time.mktime(struct_time) - time.timezone #TIMEZONE debe ser un parametro del header FITS
3083
3020
3084 ltc = utc
3021 ltc = utc
3085 if useLocalTime:
3022 if useLocalTime:
3086 ltc -= time.timezone
3023 ltc -= time.timezone
3087 thisDatetime = datetime.datetime.utcfromtimestamp(ltc)
3024 thisDatetime = datetime.datetime.utcfromtimestamp(ltc)
3088 thisTime = thisDatetime.time()
3025 thisTime = thisDatetime.time()
3089
3026
3090 if not ((startTime <= thisTime) and (endTime > thisTime)):
3027 if not ((startTime <= thisTime) and (endTime > thisTime)):
3091 return None
3028 return None
3092
3029
3093 return thisDatetime
3030 return thisDatetime
3094
3031
3095 def __setNextFileOnline(self):
3032 def __setNextFileOnline(self):
3096 raise ValueError, "No implemented"
3033 raise ValueError, "No implemented"
3097
3034
3098 def __setNextFileOffline(self):
3035 def __setNextFileOffline(self):
3099 idFile = self.fileIndex
3036 idFile = self.fileIndex
3100
3037
3101 while (True):
3038 while (True):
3102 idFile += 1
3039 idFile += 1
3103 if not(idFile < len(self.filenameList)):
3040 if not(idFile < len(self.filenameList)):
3104 self.flagNoMoreFiles = 1
3041 self.flagNoMoreFiles = 1
3105 print "No more Files"
3042 print "No more Files"
3106 return 0
3043 return 0
3107
3044
3108 filename = self.filenameList[idFile]
3045 filename = self.filenameList[idFile]
3109
3046
3110 # if not(self.__verifyFile(filename)):
3047 # if not(self.__verifyFile(filename)):
3111 # continue
3048 # continue
3112
3049
3113 fileSize = os.path.getsize(filename)
3050 fileSize = os.path.getsize(filename)
3114 fitsObj = pyfits.open(filename,'readonly')
3051 fitsObj = pyfits.open(filename,'readonly')
3115 break
3052 break
3116
3053
3117 self.flagIsNewFile = 1
3054 self.flagIsNewFile = 1
3118 self.fileIndex = idFile
3055 self.fileIndex = idFile
3119 self.filename = filename
3056 self.filename = filename
3120 self.fileSize = fileSize
3057 self.fileSize = fileSize
3121 self.fitsObj = fitsObj
3058 self.fitsObj = fitsObj
3122 self.blockIndex = 0
3059 self.blockIndex = 0
3123 print "Setting the file: %s"%self.filename
3060 print "Setting the file: %s"%self.filename
3124
3061
3125 return 1
3062 return 1
3126
3063
3127 def readHeader(self):
3064 def readHeader(self):
3128 headerObj = self.fitsObj[0]
3065 headerObj = self.fitsObj[0]
3129
3066
3130 self.header_dict = headerObj.header
3067 self.header_dict = headerObj.header
3131 if 'EXPNAME' in headerObj.header.keys():
3068 if 'EXPNAME' in headerObj.header.keys():
3132 self.expName = headerObj.header['EXPNAME']
3069 self.expName = headerObj.header['EXPNAME']
3133
3070
3134 if 'DATATYPE' in headerObj.header.keys():
3071 if 'DATATYPE' in headerObj.header.keys():
3135 self.dataType = headerObj.header['DATATYPE']
3072 self.dataType = headerObj.header['DATATYPE']
3136
3073
3137 self.datetimestr = headerObj.header['DATETIME']
3074 self.datetimestr = headerObj.header['DATETIME']
3138 self.channelList = headerObj.header['CHANNELLIST']
3075 self.channelList = headerObj.header['CHANNELLIST']
3139 self.nChannels = headerObj.header['NCHANNELS']
3076 self.nChannels = headerObj.header['NCHANNELS']
3140 self.nHeights = headerObj.header['NHEIGHTS']
3077 self.nHeights = headerObj.header['NHEIGHTS']
3141 self.ippSeconds = headerObj.header['IPPSECONDS']
3078 self.ippSeconds = headerObj.header['IPPSECONDS']
3142 self.nCohInt = headerObj.header['NCOHINT']
3079 self.nCohInt = headerObj.header['NCOHINT']
3143 self.nIncohInt = headerObj.header['NINCOHINT']
3080 self.nIncohInt = headerObj.header['NINCOHINT']
3144 self.dataBlocksPerFile = headerObj.header['NBLOCK']
3081 self.dataBlocksPerFile = headerObj.header['NBLOCK']
3145 self.timeZone = headerObj.header['TIMEZONE']
3082 self.timeZone = headerObj.header['TIMEZONE']
3146
3083
3147 self.timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt
3084 self.timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt
3148
3085
3149 if 'COMMENT' in headerObj.header.keys():
3086 if 'COMMENT' in headerObj.header.keys():
3150 self.comments = headerObj.header['COMMENT']
3087 self.comments = headerObj.header['COMMENT']
3151
3088
3152 self.readHeightList()
3089 self.readHeightList()
3153
3090
3154 def readHeightList(self):
3091 def readHeightList(self):
3155 self.blockIndex = self.blockIndex + 1
3092 self.blockIndex = self.blockIndex + 1
3156 obj = self.fitsObj[self.blockIndex]
3093 obj = self.fitsObj[self.blockIndex]
3157 self.heightList = obj.data
3094 self.heightList = obj.data
3158 self.blockIndex = self.blockIndex + 1
3095 self.blockIndex = self.blockIndex + 1
3159
3096
3160 def readExtension(self):
3097 def readExtension(self):
3161 obj = self.fitsObj[self.blockIndex]
3098 obj = self.fitsObj[self.blockIndex]
3162 self.heightList = obj.data
3099 self.heightList = obj.data
3163 self.blockIndex = self.blockIndex + 1
3100 self.blockIndex = self.blockIndex + 1
3164
3101
3165 def setNextFile(self):
3102 def setNextFile(self):
3166
3103
3167 if self.online:
3104 if self.online:
3168 newFile = self.__setNextFileOnline()
3105 newFile = self.__setNextFileOnline()
3169 else:
3106 else:
3170 newFile = self.__setNextFileOffline()
3107 newFile = self.__setNextFileOffline()
3171
3108
3172 if not(newFile):
3109 if not(newFile):
3173 return 0
3110 return 0
3174
3111
3175 self.readHeader()
3112 self.readHeader()
3176
3113
3177 self.nReadBlocks = 0
3114 self.nReadBlocks = 0
3178 # self.blockIndex = 1
3115 # self.blockIndex = 1
3179 return 1
3116 return 1
3180
3117
3181 def __searchFilesOffLine(self,
3118 def __searchFilesOffLine(self,
3182 path,
3119 path,
3183 startDate,
3120 startDate,
3184 endDate,
3121 endDate,
3185 startTime=datetime.time(0,0,0),
3122 startTime=datetime.time(0,0,0),
3186 endTime=datetime.time(23,59,59),
3123 endTime=datetime.time(23,59,59),
3187 set=None,
3124 set=None,
3188 expLabel='',
3125 expLabel='',
3189 ext='.fits',
3126 ext='.fits',
3190 walk=True):
3127 walk=True):
3191
3128
3192 pathList = []
3129 pathList = []
3193
3130
3194 if not walk:
3131 if not walk:
3195 pathList.append(path)
3132 pathList.append(path)
3196
3133
3197 else:
3134 else:
3198 dirList = []
3135 dirList = []
3199 for thisPath in os.listdir(path):
3136 for thisPath in os.listdir(path):
3200 if not os.path.isdir(os.path.join(path,thisPath)):
3137 if not os.path.isdir(os.path.join(path,thisPath)):
3201 continue
3138 continue
3202 if not isDoyFolder(thisPath):
3139 if not isDoyFolder(thisPath):
3203 continue
3140 continue
3204
3141
3205 dirList.append(thisPath)
3142 dirList.append(thisPath)
3206
3143
3207 if not(dirList):
3144 if not(dirList):
3208 return None, None
3145 return None, None
3209
3146
3210 thisDate = startDate
3147 thisDate = startDate
3211
3148
3212 while(thisDate <= endDate):
3149 while(thisDate <= endDate):
3213 year = thisDate.timetuple().tm_year
3150 year = thisDate.timetuple().tm_year
3214 doy = thisDate.timetuple().tm_yday
3151 doy = thisDate.timetuple().tm_yday
3215
3152
3216 matchlist = fnmatch.filter(dirList, '?' + '%4.4d%3.3d' % (year,doy) + '*')
3153 matchlist = fnmatch.filter(dirList, '?' + '%4.4d%3.3d' % (year,doy) + '*')
3217 if len(matchlist) == 0:
3154 if len(matchlist) == 0:
3218 thisDate += datetime.timedelta(1)
3155 thisDate += datetime.timedelta(1)
3219 continue
3156 continue
3220 for match in matchlist:
3157 for match in matchlist:
3221 pathList.append(os.path.join(path,match,expLabel))
3158 pathList.append(os.path.join(path,match,expLabel))
3222
3159
3223 thisDate += datetime.timedelta(1)
3160 thisDate += datetime.timedelta(1)
3224
3161
3225 if pathList == []:
3162 if pathList == []:
3226 print "Any folder was found for the date range: %s-%s" %(startDate, endDate)
3163 print "Any folder was found for the date range: %s-%s" %(startDate, endDate)
3227 return None, None
3164 return None, None
3228
3165
3229 print "%d folder(s) was(were) found for the date range: %s - %s" %(len(pathList), startDate, endDate)
3166 print "%d folder(s) was(were) found for the date range: %s - %s" %(len(pathList), startDate, endDate)
3230
3167
3231 filenameList = []
3168 filenameList = []
3232 datetimeList = []
3169 datetimeList = []
3233
3170
3234 for i in range(len(pathList)):
3171 for i in range(len(pathList)):
3235
3172
3236 thisPath = pathList[i]
3173 thisPath = pathList[i]
3237
3174
3238 fileList = glob.glob1(thisPath, "*%s" %ext)
3175 fileList = glob.glob1(thisPath, "*%s" %ext)
3239 fileList.sort()
3176 fileList.sort()
3240
3177
3241 for file in fileList:
3178 for file in fileList:
3242
3179
3243 filename = os.path.join(thisPath,file)
3180 filename = os.path.join(thisPath,file)
3244 thisDatetime = self.isFileinThisTime(filename, startTime, endTime)
3181 thisDatetime = self.isFileinThisTime(filename, startTime, endTime)
3245
3182
3246 if not(thisDatetime):
3183 if not(thisDatetime):
3247 continue
3184 continue
3248
3185
3249 filenameList.append(filename)
3186 filenameList.append(filename)
3250 datetimeList.append(thisDatetime)
3187 datetimeList.append(thisDatetime)
3251
3188
3252 if not(filenameList):
3189 if not(filenameList):
3253 print "Any file was found for the time range %s - %s" %(startTime, endTime)
3190 print "Any file was found for the time range %s - %s" %(startTime, endTime)
3254 return None, None
3191 return None, None
3255
3192
3256 print "%d file(s) was(were) found for the time range: %s - %s" %(len(filenameList), startTime, endTime)
3193 print "%d file(s) was(were) found for the time range: %s - %s" %(len(filenameList), startTime, endTime)
3257 print
3194 print
3258
3195
3259 for i in range(len(filenameList)):
3196 for i in range(len(filenameList)):
3260 print "%s -> [%s]" %(filenameList[i], datetimeList[i].ctime())
3197 print "%s -> [%s]" %(filenameList[i], datetimeList[i].ctime())
3261
3198
3262 self.filenameList = filenameList
3199 self.filenameList = filenameList
3263 self.datetimeList = datetimeList
3200 self.datetimeList = datetimeList
3264
3201
3265 return pathList, filenameList
3202 return pathList, filenameList
3266
3203
3267 def setup(self, path=None,
3204 def setup(self, path=None,
3268 startDate=None,
3205 startDate=None,
3269 endDate=None,
3206 endDate=None,
3270 startTime=datetime.time(0,0,0),
3207 startTime=datetime.time(0,0,0),
3271 endTime=datetime.time(23,59,59),
3208 endTime=datetime.time(23,59,59),
3272 set=0,
3209 set=0,
3273 expLabel = "",
3210 expLabel = "",
3274 ext = None,
3211 ext = None,
3275 online = False,
3212 online = False,
3276 delay = 60,
3213 delay = 60,
3277 walk = True):
3214 walk = True):
3278
3215
3279 if path == None:
3216 if path == None:
3280 raise ValueError, "The path is not valid"
3217 raise ValueError, "The path is not valid"
3281
3218
3282 if ext == None:
3219 if ext == None:
3283 ext = self.ext
3220 ext = self.ext
3284
3221
3285 if not(online):
3222 if not(online):
3286 print "Searching files in offline mode ..."
3223 print "Searching files in offline mode ..."
3287 pathList, filenameList = self.__searchFilesOffLine(path, startDate=startDate, endDate=endDate,
3224 pathList, filenameList = self.__searchFilesOffLine(path, startDate=startDate, endDate=endDate,
3288 startTime=startTime, endTime=endTime,
3225 startTime=startTime, endTime=endTime,
3289 set=set, expLabel=expLabel, ext=ext,
3226 set=set, expLabel=expLabel, ext=ext,
3290 walk=walk)
3227 walk=walk)
3291
3228
3292 if not(pathList):
3229 if not(pathList):
3293 print "No *%s files into the folder %s \nfor the range: %s - %s"%(ext, path,
3230 print "No *%s files into the folder %s \nfor the range: %s - %s"%(ext, path,
3294 datetime.datetime.combine(startDate,startTime).ctime(),
3231 datetime.datetime.combine(startDate,startTime).ctime(),
3295 datetime.datetime.combine(endDate,endTime).ctime())
3232 datetime.datetime.combine(endDate,endTime).ctime())
3296
3233
3297 sys.exit(-1)
3234 sys.exit(-1)
3298
3235
3299 self.fileIndex = -1
3236 self.fileIndex = -1
3300 self.pathList = pathList
3237 self.pathList = pathList
3301 self.filenameList = filenameList
3238 self.filenameList = filenameList
3302
3239
3303 self.online = online
3240 self.online = online
3304 self.delay = delay
3241 self.delay = delay
3305 ext = ext.lower()
3242 ext = ext.lower()
3306 self.ext = ext
3243 self.ext = ext
3307
3244
3308 if not(self.setNextFile()):
3245 if not(self.setNextFile()):
3309 if (startDate!=None) and (endDate!=None):
3246 if (startDate!=None) and (endDate!=None):
3310 print "No files in range: %s - %s" %(datetime.datetime.combine(startDate,startTime).ctime(), datetime.datetime.combine(endDate,endTime).ctime())
3247 print "No files in range: %s - %s" %(datetime.datetime.combine(startDate,startTime).ctime(), datetime.datetime.combine(endDate,endTime).ctime())
3311 elif startDate != None:
3248 elif startDate != None:
3312 print "No files in range: %s" %(datetime.datetime.combine(startDate,startTime).ctime())
3249 print "No files in range: %s" %(datetime.datetime.combine(startDate,startTime).ctime())
3313 else:
3250 else:
3314 print "No files"
3251 print "No files"
3315
3252
3316 sys.exit(-1)
3253 sys.exit(-1)
3317
3254
3318
3255
3319
3256
3320 def readBlock(self):
3257 def readBlock(self):
3321 dataObj = self.fitsObj[self.blockIndex]
3258 dataObj = self.fitsObj[self.blockIndex]
3322
3259
3323 self.data = dataObj.data
3260 self.data = dataObj.data
3324 self.data_header_dict = dataObj.header
3261 self.data_header_dict = dataObj.header
3325 self.utc = self.data_header_dict['UTCTIME']
3262 self.utc = self.data_header_dict['UTCTIME']
3326
3263
3327 self.flagIsNewFile = 0
3264 self.flagIsNewFile = 0
3328 self.blockIndex += 1
3265 self.blockIndex += 1
3329 self.nTotalBlocks += 1
3266 self.nTotalBlocks += 1
3330 self.nReadBlocks += 1
3267 self.nReadBlocks += 1
3331
3268
3332 return 1
3269 return 1
3333
3270
3334 def __jumpToLastBlock(self):
3271 def __jumpToLastBlock(self):
3335 raise ValueError, "No implemented"
3272 raise ValueError, "No implemented"
3336
3273
3337 def __waitNewBlock(self):
3274 def __waitNewBlock(self):
3338 """
3275 """
3339 Return 1 si se encontro un nuevo bloque de datos, 0 de otra forma.
3276 Return 1 si se encontro un nuevo bloque de datos, 0 de otra forma.
3340
3277
3341 Si el modo de lectura es OffLine siempre retorn 0
3278 Si el modo de lectura es OffLine siempre retorn 0
3342 """
3279 """
3343 if not self.online:
3280 if not self.online:
3344 return 0
3281 return 0
3345
3282
3346 if (self.nReadBlocks >= self.dataBlocksPerFile):
3283 if (self.nReadBlocks >= self.dataBlocksPerFile):
3347 return 0
3284 return 0
3348
3285
3349 currentPointer = self.fp.tell()
3286 currentPointer = self.fp.tell()
3350
3287
3351 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
3288 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
3352
3289
3353 for nTries in range( self.nTries ):
3290 for nTries in range( self.nTries ):
3354
3291
3355 self.fp.close()
3292 self.fp.close()
3356 self.fp = open( self.filename, 'rb' )
3293 self.fp = open( self.filename, 'rb' )
3357 self.fp.seek( currentPointer )
3294 self.fp.seek( currentPointer )
3358
3295
3359 self.fileSize = os.path.getsize( self.filename )
3296 self.fileSize = os.path.getsize( self.filename )
3360 currentSize = self.fileSize - currentPointer
3297 currentSize = self.fileSize - currentPointer
3361
3298
3362 if ( currentSize >= neededSize ):
3299 if ( currentSize >= neededSize ):
3363 self.__rdBasicHeader()
3300 self.__rdBasicHeader()
3364 return 1
3301 return 1
3365
3302
3366 print "\tWaiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
3303 print "\tWaiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
3367 time.sleep( self.delay )
3304 time.sleep( self.delay )
3368
3305
3369
3306
3370 return 0
3307 return 0
3371
3308
3372 def __setNewBlock(self):
3309 def __setNewBlock(self):
3373
3310
3374 if self.online:
3311 if self.online:
3375 self.__jumpToLastBlock()
3312 self.__jumpToLastBlock()
3376
3313
3377 if self.flagIsNewFile:
3314 if self.flagIsNewFile:
3378 return 1
3315 return 1
3379
3316
3380 self.lastUTTime = self.utc
3317 self.lastUTTime = self.utc
3381
3318
3382 if self.online:
3319 if self.online:
3383 if self.__waitNewBlock():
3320 if self.__waitNewBlock():
3384 return 1
3321 return 1
3385
3322
3386 if self.nReadBlocks < self.dataBlocksPerFile:
3323 if self.nReadBlocks < self.dataBlocksPerFile:
3387 return 1
3324 return 1
3388
3325
3389 if not(self.setNextFile()):
3326 if not(self.setNextFile()):
3390 return 0
3327 return 0
3391
3328
3392 deltaTime = self.utc - self.lastUTTime
3329 deltaTime = self.utc - self.lastUTTime
3393
3330
3394 self.flagTimeBlock = 0
3331 self.flagTimeBlock = 0
3395
3332
3396 if deltaTime > self.maxTimeStep:
3333 if deltaTime > self.maxTimeStep:
3397 self.flagTimeBlock = 1
3334 self.flagTimeBlock = 1
3398
3335
3399 return 1
3336 return 1
3400
3337
3401
3338
3402 def readNextBlock(self):
3339 def readNextBlock(self):
3403 if not(self.__setNewBlock()):
3340 if not(self.__setNewBlock()):
3404 return 0
3341 return 0
3405
3342
3406 if not(self.readBlock()):
3343 if not(self.readBlock()):
3407 return 0
3344 return 0
3408
3345
3409 return 1
3346 return 1
3410
3347
3411
3348
3412 def getData(self):
3349 def getData(self):
3413
3350
3414 if self.flagNoMoreFiles:
3351 if self.flagNoMoreFiles:
3415 self.dataOut.flagNoData = True
3352 self.dataOut.flagNoData = True
3416 print 'Process finished'
3353 print 'Process finished'
3417 return 0
3354 return 0
3418
3355
3419 self.flagTimeBlock = 0
3356 self.flagTimeBlock = 0
3420 self.flagIsNewBlock = 0
3357 self.flagIsNewBlock = 0
3421
3358
3422 if not(self.readNextBlock()):
3359 if not(self.readNextBlock()):
3423 return 0
3360 return 0
3424
3361
3425 if self.data == None:
3362 if self.data == None:
3426 self.dataOut.flagNoData = True
3363 self.dataOut.flagNoData = True
3427 return 0
3364 return 0
3428
3365
3429 self.dataOut.data = self.data
3366 self.dataOut.data = self.data
3430 self.dataOut.data_header = self.data_header_dict
3367 self.dataOut.data_header = self.data_header_dict
3431 self.dataOut.utctime = self.utc
3368 self.dataOut.utctime = self.utc
3432
3369
3433 self.dataOut.header = self.header_dict
3370 self.dataOut.header = self.header_dict
3434 self.dataOut.expName = self.expName
3371 self.dataOut.expName = self.expName
3435 self.dataOut.nChannels = self.nChannels
3372 self.dataOut.nChannels = self.nChannels
3436 self.dataOut.timeZone = self.timeZone
3373 self.dataOut.timeZone = self.timeZone
3437 self.dataOut.dataBlocksPerFile = self.dataBlocksPerFile
3374 self.dataOut.dataBlocksPerFile = self.dataBlocksPerFile
3438 self.dataOut.comments = self.comments
3375 self.dataOut.comments = self.comments
3439 self.dataOut.timeInterval = self.timeInterval
3376 self.dataOut.timeInterval = self.timeInterval
3440 self.dataOut.channelList = self.channelList
3377 self.dataOut.channelList = self.channelList
3441 self.dataOut.heightList = self.heightList
3378 self.dataOut.heightList = self.heightList
3442 self.dataOut.flagNoData = False
3379 self.dataOut.flagNoData = False
3443
3380
3444 return self.dataOut.data
3381 return self.dataOut.data
3445
3382
3446 def run(self, **kwargs):
3383 def run(self, **kwargs):
3447
3384
3448 if not(self.isConfig):
3385 if not(self.isConfig):
3449 self.setup(**kwargs)
3386 self.setup(**kwargs)
3450 self.isConfig = True
3387 self.isConfig = True
3451
3388
3452 self.getData() No newline at end of file
3389 self.getData()
@@ -1,1720 +1,1917
1 '''
1 '''
2
2
3 $Author: dsuarez $
3 $Author: dsuarez $
4 $Id: Processor.py 1 2012-11-12 18:56:07Z dsuarez $
4 $Id: Processor.py 1 2012-11-12 18:56:07Z dsuarez $
5 '''
5 '''
6 import os
6 import os
7 import numpy
7 import numpy
8 import datetime
8 import datetime
9 import time
9 import time
10
10
11 from jrodata import *
11 from jrodata import *
12 from jrodataIO import *
12 from jrodataIO import *
13 from jroplot import *
13 from jroplot import *
14
14
15 try:
15 try:
16 import cfunctions
16 import cfunctions
17 except:
17 except:
18 pass
18 pass
19
19
20 class ProcessingUnit:
20 class ProcessingUnit:
21
21
22 """
22 """
23 Esta es la clase base para el procesamiento de datos.
23 Esta es la clase base para el procesamiento de datos.
24
24
25 Contiene el metodo "call" para llamar operaciones. Las operaciones pueden ser:
25 Contiene el metodo "call" para llamar operaciones. Las operaciones pueden ser:
26 - Metodos internos (callMethod)
26 - Metodos internos (callMethod)
27 - Objetos del tipo Operation (callObject). Antes de ser llamados, estos objetos
27 - Objetos del tipo Operation (callObject). Antes de ser llamados, estos objetos
28 tienen que ser agreagados con el metodo "add".
28 tienen que ser agreagados con el metodo "add".
29
29
30 """
30 """
31 # objeto de datos de entrada (Voltage, Spectra o Correlation)
31 # objeto de datos de entrada (Voltage, Spectra o Correlation)
32 dataIn = None
32 dataIn = None
33
33
34 # objeto de datos de entrada (Voltage, Spectra o Correlation)
34 # objeto de datos de entrada (Voltage, Spectra o Correlation)
35 dataOut = None
35 dataOut = None
36
36
37
37
38 objectDict = None
38 objectDict = None
39
39
40 def __init__(self):
40 def __init__(self):
41
41
42 self.objectDict = {}
42 self.objectDict = {}
43
43
44 def init(self):
44 def init(self):
45
45
46 raise ValueError, "Not implemented"
46 raise ValueError, "Not implemented"
47
47
48 def addOperation(self, object, objId):
48 def addOperation(self, object, objId):
49
49
50 """
50 """
51 Agrega el objeto "object" a la lista de objetos "self.objectList" y retorna el
51 Agrega el objeto "object" a la lista de objetos "self.objectList" y retorna el
52 identificador asociado a este objeto.
52 identificador asociado a este objeto.
53
53
54 Input:
54 Input:
55
55
56 object : objeto de la clase "Operation"
56 object : objeto de la clase "Operation"
57
57
58 Return:
58 Return:
59
59
60 objId : identificador del objeto, necesario para ejecutar la operacion
60 objId : identificador del objeto, necesario para ejecutar la operacion
61 """
61 """
62
62
63 self.objectDict[objId] = object
63 self.objectDict[objId] = object
64
64
65 return objId
65 return objId
66
66
67 def operation(self, **kwargs):
67 def operation(self, **kwargs):
68
68
69 """
69 """
70 Operacion directa sobre la data (dataOut.data). Es necesario actualizar los valores de los
70 Operacion directa sobre la data (dataOut.data). Es necesario actualizar los valores de los
71 atributos del objeto dataOut
71 atributos del objeto dataOut
72
72
73 Input:
73 Input:
74
74
75 **kwargs : Diccionario de argumentos de la funcion a ejecutar
75 **kwargs : Diccionario de argumentos de la funcion a ejecutar
76 """
76 """
77
77
78 raise ValueError, "ImplementedError"
78 raise ValueError, "ImplementedError"
79
79
80 def callMethod(self, name, **kwargs):
80 def callMethod(self, name, **kwargs):
81
81
82 """
82 """
83 Ejecuta el metodo con el nombre "name" y con argumentos **kwargs de la propia clase.
83 Ejecuta el metodo con el nombre "name" y con argumentos **kwargs de la propia clase.
84
84
85 Input:
85 Input:
86 name : nombre del metodo a ejecutar
86 name : nombre del metodo a ejecutar
87
87
88 **kwargs : diccionario con los nombres y valores de la funcion a ejecutar.
88 **kwargs : diccionario con los nombres y valores de la funcion a ejecutar.
89
89
90 """
90 """
91 if name != 'run':
91 if name != 'run':
92
92
93 if name == 'init' and self.dataIn.isEmpty():
93 if name == 'init' and self.dataIn.isEmpty():
94 self.dataOut.flagNoData = True
94 self.dataOut.flagNoData = True
95 return False
95 return False
96
96
97 if name != 'init' and self.dataOut.isEmpty():
97 if name != 'init' and self.dataOut.isEmpty():
98 return False
98 return False
99
99
100 methodToCall = getattr(self, name)
100 methodToCall = getattr(self, name)
101
101
102 methodToCall(**kwargs)
102 methodToCall(**kwargs)
103
103
104 if name != 'run':
104 if name != 'run':
105 return True
105 return True
106
106
107 if self.dataOut.isEmpty():
107 if self.dataOut.isEmpty():
108 return False
108 return False
109
109
110 return True
110 return True
111
111
112 def callObject(self, objId, **kwargs):
112 def callObject(self, objId, **kwargs):
113
113
114 """
114 """
115 Ejecuta la operacion asociada al identificador del objeto "objId"
115 Ejecuta la operacion asociada al identificador del objeto "objId"
116
116
117 Input:
117 Input:
118
118
119 objId : identificador del objeto a ejecutar
119 objId : identificador del objeto a ejecutar
120
120
121 **kwargs : diccionario con los nombres y valores de la funcion a ejecutar.
121 **kwargs : diccionario con los nombres y valores de la funcion a ejecutar.
122
122
123 Return:
123 Return:
124
124
125 None
125 None
126 """
126 """
127
127
128 if self.dataOut.isEmpty():
128 if self.dataOut.isEmpty():
129 return False
129 return False
130
130
131 object = self.objectDict[objId]
131 object = self.objectDict[objId]
132
132
133 object.run(self.dataOut, **kwargs)
133 object.run(self.dataOut, **kwargs)
134
134
135 return True
135 return True
136
136
137 def call(self, operationConf, **kwargs):
137 def call(self, operationConf, **kwargs):
138
138
139 """
139 """
140 Return True si ejecuta la operacion "operationConf.name" con los
140 Return True si ejecuta la operacion "operationConf.name" con los
141 argumentos "**kwargs". False si la operacion no se ha ejecutado.
141 argumentos "**kwargs". False si la operacion no se ha ejecutado.
142 La operacion puede ser de dos tipos:
142 La operacion puede ser de dos tipos:
143
143
144 1. Un metodo propio de esta clase:
144 1. Un metodo propio de esta clase:
145
145
146 operation.type = "self"
146 operation.type = "self"
147
147
148 2. El metodo "run" de un objeto del tipo Operation o de un derivado de ella:
148 2. El metodo "run" de un objeto del tipo Operation o de un derivado de ella:
149 operation.type = "other".
149 operation.type = "other".
150
150
151 Este objeto de tipo Operation debe de haber sido agregado antes con el metodo:
151 Este objeto de tipo Operation debe de haber sido agregado antes con el metodo:
152 "addOperation" e identificado con el operation.id
152 "addOperation" e identificado con el operation.id
153
153
154
154
155 con el id de la operacion.
155 con el id de la operacion.
156
156
157 Input:
157 Input:
158
158
159 Operation : Objeto del tipo operacion con los atributos: name, type y id.
159 Operation : Objeto del tipo operacion con los atributos: name, type y id.
160
160
161 """
161 """
162
162
163 if operationConf.type == 'self':
163 if operationConf.type == 'self':
164 sts = self.callMethod(operationConf.name, **kwargs)
164 sts = self.callMethod(operationConf.name, **kwargs)
165
165
166 if operationConf.type == 'other':
166 if operationConf.type == 'other':
167 sts = self.callObject(operationConf.id, **kwargs)
167 sts = self.callObject(operationConf.id, **kwargs)
168
168
169 return sts
169 return sts
170
170
171 def setInput(self, dataIn):
171 def setInput(self, dataIn):
172
172
173 self.dataIn = dataIn
173 self.dataIn = dataIn
174
174
175 def getOutput(self):
175 def getOutput(self):
176
176
177 return self.dataOut
177 return self.dataOut
178
178
179 class Operation():
179 class Operation():
180
180
181 """
181 """
182 Clase base para definir las operaciones adicionales que se pueden agregar a la clase ProcessingUnit
182 Clase base para definir las operaciones adicionales que se pueden agregar a la clase ProcessingUnit
183 y necesiten acumular informacion previa de los datos a procesar. De preferencia usar un buffer de
183 y necesiten acumular informacion previa de los datos a procesar. De preferencia usar un buffer de
184 acumulacion dentro de esta clase
184 acumulacion dentro de esta clase
185
185
186 Ejemplo: Integraciones coherentes, necesita la informacion previa de los n perfiles anteriores (bufffer)
186 Ejemplo: Integraciones coherentes, necesita la informacion previa de los n perfiles anteriores (bufffer)
187
187
188 """
188 """
189
189
190 __buffer = None
190 __buffer = None
191 __isConfig = False
191 __isConfig = False
192
192
193 def __init__(self):
193 def __init__(self):
194
194
195 pass
195 pass
196
196
197 def run(self, dataIn, **kwargs):
197 def run(self, dataIn, **kwargs):
198
198
199 """
199 """
200 Realiza las operaciones necesarias sobre la dataIn.data y actualiza los atributos del objeto dataIn.
200 Realiza las operaciones necesarias sobre la dataIn.data y actualiza los atributos del objeto dataIn.
201
201
202 Input:
202 Input:
203
203
204 dataIn : objeto del tipo JROData
204 dataIn : objeto del tipo JROData
205
205
206 Return:
206 Return:
207
207
208 None
208 None
209
209
210 Affected:
210 Affected:
211 __buffer : buffer de recepcion de datos.
211 __buffer : buffer de recepcion de datos.
212
212
213 """
213 """
214
214
215 raise ValueError, "ImplementedError"
215 raise ValueError, "ImplementedError"
216
216
217 class VoltageProc(ProcessingUnit):
217 class VoltageProc(ProcessingUnit):
218
218
219
219
220 def __init__(self):
220 def __init__(self):
221
221
222 self.objectDict = {}
222 self.objectDict = {}
223 self.dataOut = Voltage()
223 self.dataOut = Voltage()
224 self.flip = 1
224 self.flip = 1
225
225
226 def init(self):
226 def init(self):
227
227
228 self.dataOut.copy(self.dataIn)
228 self.dataOut.copy(self.dataIn)
229 # No necesita copiar en cada init() los atributos de dataIn
229 # No necesita copiar en cada init() los atributos de dataIn
230 # la copia deberia hacerse por cada nuevo bloque de datos
230 # la copia deberia hacerse por cada nuevo bloque de datos
231
231
232 def selectChannels(self, channelList):
232 def selectChannels(self, channelList):
233
233
234 channelIndexList = []
234 channelIndexList = []
235
235
236 for channel in channelList:
236 for channel in channelList:
237 index = self.dataOut.channelList.index(channel)
237 index = self.dataOut.channelList.index(channel)
238 channelIndexList.append(index)
238 channelIndexList.append(index)
239
239
240 self.selectChannelsByIndex(channelIndexList)
240 self.selectChannelsByIndex(channelIndexList)
241
241
242 def selectChannelsByIndex(self, channelIndexList):
242 def selectChannelsByIndex(self, channelIndexList):
243 """
243 """
244 Selecciona un bloque de datos en base a canales segun el channelIndexList
244 Selecciona un bloque de datos en base a canales segun el channelIndexList
245
245
246 Input:
246 Input:
247 channelIndexList : lista sencilla de canales a seleccionar por ej. [2,3,7]
247 channelIndexList : lista sencilla de canales a seleccionar por ej. [2,3,7]
248
248
249 Affected:
249 Affected:
250 self.dataOut.data
250 self.dataOut.data
251 self.dataOut.channelIndexList
251 self.dataOut.channelIndexList
252 self.dataOut.nChannels
252 self.dataOut.nChannels
253 self.dataOut.m_ProcessingHeader.totalSpectra
253 self.dataOut.m_ProcessingHeader.totalSpectra
254 self.dataOut.systemHeaderObj.numChannels
254 self.dataOut.systemHeaderObj.numChannels
255 self.dataOut.m_ProcessingHeader.blockSize
255 self.dataOut.m_ProcessingHeader.blockSize
256
256
257 Return:
257 Return:
258 None
258 None
259 """
259 """
260
260
261 for channelIndex in channelIndexList:
261 for channelIndex in channelIndexList:
262 if channelIndex not in self.dataOut.channelIndexList:
262 if channelIndex not in self.dataOut.channelIndexList:
263 print channelIndexList
263 print channelIndexList
264 raise ValueError, "The value %d in channelIndexList is not valid" %channelIndex
264 raise ValueError, "The value %d in channelIndexList is not valid" %channelIndex
265
265
266 nChannels = len(channelIndexList)
266 nChannels = len(channelIndexList)
267
267
268 data = self.dataOut.data[channelIndexList,:]
268 data = self.dataOut.data[channelIndexList,:]
269
269
270 self.dataOut.data = data
270 self.dataOut.data = data
271 self.dataOut.channelList = [self.dataOut.channelList[i] for i in channelIndexList]
271 self.dataOut.channelList = [self.dataOut.channelList[i] for i in channelIndexList]
272 # self.dataOut.nChannels = nChannels
272 # self.dataOut.nChannels = nChannels
273
273
274 return 1
274 return 1
275
275
276 def selectHeights(self, minHei=None, maxHei=None):
276 def selectHeights(self, minHei=None, maxHei=None):
277 """
277 """
278 Selecciona un bloque de datos en base a un grupo de valores de alturas segun el rango
278 Selecciona un bloque de datos en base a un grupo de valores de alturas segun el rango
279 minHei <= height <= maxHei
279 minHei <= height <= maxHei
280
280
281 Input:
281 Input:
282 minHei : valor minimo de altura a considerar
282 minHei : valor minimo de altura a considerar
283 maxHei : valor maximo de altura a considerar
283 maxHei : valor maximo de altura a considerar
284
284
285 Affected:
285 Affected:
286 Indirectamente son cambiados varios valores a travez del metodo selectHeightsByIndex
286 Indirectamente son cambiados varios valores a travez del metodo selectHeightsByIndex
287
287
288 Return:
288 Return:
289 1 si el metodo se ejecuto con exito caso contrario devuelve 0
289 1 si el metodo se ejecuto con exito caso contrario devuelve 0
290 """
290 """
291
291
292 if minHei == None:
292 if minHei == None:
293 minHei = self.dataOut.heightList[0]
293 minHei = self.dataOut.heightList[0]
294
294
295 if maxHei == None:
295 if maxHei == None:
296 maxHei = self.dataOut.heightList[-1]
296 maxHei = self.dataOut.heightList[-1]
297
297
298 if (minHei < self.dataOut.heightList[0]) or (minHei > maxHei):
298 if (minHei < self.dataOut.heightList[0]) or (minHei > maxHei):
299 raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
299 raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
300
300
301
301
302 if (maxHei > self.dataOut.heightList[-1]):
302 if (maxHei > self.dataOut.heightList[-1]):
303 maxHei = self.dataOut.heightList[-1]
303 maxHei = self.dataOut.heightList[-1]
304 # raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
304 # raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
305
305
306 minIndex = 0
306 minIndex = 0
307 maxIndex = 0
307 maxIndex = 0
308 heights = self.dataOut.heightList
308 heights = self.dataOut.heightList
309
309
310 inda = numpy.where(heights >= minHei)
310 inda = numpy.where(heights >= minHei)
311 indb = numpy.where(heights <= maxHei)
311 indb = numpy.where(heights <= maxHei)
312
312
313 try:
313 try:
314 minIndex = inda[0][0]
314 minIndex = inda[0][0]
315 except:
315 except:
316 minIndex = 0
316 minIndex = 0
317
317
318 try:
318 try:
319 maxIndex = indb[0][-1]
319 maxIndex = indb[0][-1]
320 except:
320 except:
321 maxIndex = len(heights)
321 maxIndex = len(heights)
322
322
323 self.selectHeightsByIndex(minIndex, maxIndex)
323 self.selectHeightsByIndex(minIndex, maxIndex)
324
324
325 return 1
325 return 1
326
326
327
327
328 def selectHeightsByIndex(self, minIndex, maxIndex):
328 def selectHeightsByIndex(self, minIndex, maxIndex):
329 """
329 """
330 Selecciona un bloque de datos en base a un grupo indices de alturas segun el rango
330 Selecciona un bloque de datos en base a un grupo indices de alturas segun el rango
331 minIndex <= index <= maxIndex
331 minIndex <= index <= maxIndex
332
332
333 Input:
333 Input:
334 minIndex : valor de indice minimo de altura a considerar
334 minIndex : valor de indice minimo de altura a considerar
335 maxIndex : valor de indice maximo de altura a considerar
335 maxIndex : valor de indice maximo de altura a considerar
336
336
337 Affected:
337 Affected:
338 self.dataOut.data
338 self.dataOut.data
339 self.dataOut.heightList
339 self.dataOut.heightList
340
340
341 Return:
341 Return:
342 1 si el metodo se ejecuto con exito caso contrario devuelve 0
342 1 si el metodo se ejecuto con exito caso contrario devuelve 0
343 """
343 """
344
344
345 if (minIndex < 0) or (minIndex > maxIndex):
345 if (minIndex < 0) or (minIndex > maxIndex):
346 raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
346 raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
347
347
348 if (maxIndex >= self.dataOut.nHeights):
348 if (maxIndex >= self.dataOut.nHeights):
349 maxIndex = self.dataOut.nHeights-1
349 maxIndex = self.dataOut.nHeights-1
350 # raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
350 # raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
351
351
352 nHeights = maxIndex - minIndex + 1
352 nHeights = maxIndex - minIndex + 1
353
353
354 #voltage
354 #voltage
355 data = self.dataOut.data[:,minIndex:maxIndex+1]
355 data = self.dataOut.data[:,minIndex:maxIndex+1]
356
356
357 firstHeight = self.dataOut.heightList[minIndex]
357 firstHeight = self.dataOut.heightList[minIndex]
358
358
359 self.dataOut.data = data
359 self.dataOut.data = data
360 self.dataOut.heightList = self.dataOut.heightList[minIndex:maxIndex+1]
360 self.dataOut.heightList = self.dataOut.heightList[minIndex:maxIndex+1]
361
361
362 return 1
362 return 1
363
363
364
364
365 def filterByHeights(self, window):
365 def filterByHeights(self, window):
366 deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
366 deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
367
367
368 if window == None:
368 if window == None:
369 window = (self.dataOut.radarControllerHeaderObj.txA/self.dataOut.radarControllerHeaderObj.nBaud) / deltaHeight
369 window = (self.dataOut.radarControllerHeaderObj.txA/self.dataOut.radarControllerHeaderObj.nBaud) / deltaHeight
370
370
371 newdelta = deltaHeight * window
371 newdelta = deltaHeight * window
372 r = self.dataOut.data.shape[1] % window
372 r = self.dataOut.data.shape[1] % window
373 buffer = self.dataOut.data[:,0:self.dataOut.data.shape[1]-r]
373 buffer = self.dataOut.data[:,0:self.dataOut.data.shape[1]-r]
374 buffer = buffer.reshape(self.dataOut.data.shape[0],self.dataOut.data.shape[1]/window,window)
374 buffer = buffer.reshape(self.dataOut.data.shape[0],self.dataOut.data.shape[1]/window,window)
375 buffer = numpy.sum(buffer,2)
375 buffer = numpy.sum(buffer,2)
376 self.dataOut.data = buffer
376 self.dataOut.data = buffer
377 self.dataOut.heightList = numpy.arange(self.dataOut.heightList[0],newdelta*(self.dataOut.nHeights-r)/window,newdelta)
377 self.dataOut.heightList = numpy.arange(self.dataOut.heightList[0],newdelta*(self.dataOut.nHeights-r)/window,newdelta)
378 self.dataOut.windowOfFilter = window
378 self.dataOut.windowOfFilter = window
379
379
380 def deFlip(self):
380 def deFlip(self):
381 self.dataOut.data *= self.flip
381 self.dataOut.data *= self.flip
382 self.flip *= -1.
382 self.flip *= -1.
383
383
384 def setRadarFrequency(self, frequency=None):
384 def setRadarFrequency(self, frequency=None):
385 if frequency != None:
385 if frequency != None:
386 self.dataOut.frequency = frequency
386 self.dataOut.frequency = frequency
387
387
388 return 1
388 return 1
389
389
390 class CohInt(Operation):
390 class CohInt(Operation):
391
391
392 __isConfig = False
392 __isConfig = False
393
393
394 __profIndex = 0
394 __profIndex = 0
395 __withOverapping = False
395 __withOverapping = False
396
396
397 __byTime = False
397 __byTime = False
398 __initime = None
398 __initime = None
399 __lastdatatime = None
399 __lastdatatime = None
400 __integrationtime = None
400 __integrationtime = None
401
401
402 __buffer = None
402 __buffer = None
403
403
404 __dataReady = False
404 __dataReady = False
405
405
406 n = None
406 n = None
407
407
408
408
409 def __init__(self):
409 def __init__(self):
410
410
411 self.__isConfig = False
411 self.__isConfig = False
412
412
413 def setup(self, n=None, timeInterval=None, overlapping=False):
413 def setup(self, n=None, timeInterval=None, overlapping=False):
414 """
414 """
415 Set the parameters of the integration class.
415 Set the parameters of the integration class.
416
416
417 Inputs:
417 Inputs:
418
418
419 n : Number of coherent integrations
419 n : Number of coherent integrations
420 timeInterval : Time of integration. If the parameter "n" is selected this one does not work
420 timeInterval : Time of integration. If the parameter "n" is selected this one does not work
421 overlapping :
421 overlapping :
422
422
423 """
423 """
424
424
425 self.__initime = None
425 self.__initime = None
426 self.__lastdatatime = 0
426 self.__lastdatatime = 0
427 self.__buffer = None
427 self.__buffer = None
428 self.__dataReady = False
428 self.__dataReady = False
429
429
430
430
431 if n == None and timeInterval == None:
431 if n == None and timeInterval == None:
432 raise ValueError, "n or timeInterval should be specified ..."
432 raise ValueError, "n or timeInterval should be specified ..."
433
433
434 if n != None:
434 if n != None:
435 self.n = n
435 self.n = n
436 self.__byTime = False
436 self.__byTime = False
437 else:
437 else:
438 self.__integrationtime = timeInterval * 60. #if (type(timeInterval)!=integer) -> change this line
438 self.__integrationtime = timeInterval * 60. #if (type(timeInterval)!=integer) -> change this line
439 self.n = 9999
439 self.n = 9999
440 self.__byTime = True
440 self.__byTime = True
441
441
442 if overlapping:
442 if overlapping:
443 self.__withOverapping = True
443 self.__withOverapping = True
444 self.__buffer = None
444 self.__buffer = None
445 else:
445 else:
446 self.__withOverapping = False
446 self.__withOverapping = False
447 self.__buffer = 0
447 self.__buffer = 0
448
448
449 self.__profIndex = 0
449 self.__profIndex = 0
450
450
451 def putData(self, data):
451 def putData(self, data):
452
452
453 """
453 """
454 Add a profile to the __buffer and increase in one the __profileIndex
454 Add a profile to the __buffer and increase in one the __profileIndex
455
455
456 """
456 """
457
457
458 if not self.__withOverapping:
458 if not self.__withOverapping:
459 self.__buffer += data.copy()
459 self.__buffer += data.copy()
460 self.__profIndex += 1
460 self.__profIndex += 1
461 return
461 return
462
462
463 #Overlapping data
463 #Overlapping data
464 nChannels, nHeis = data.shape
464 nChannels, nHeis = data.shape
465 data = numpy.reshape(data, (1, nChannels, nHeis))
465 data = numpy.reshape(data, (1, nChannels, nHeis))
466
466
467 #If the buffer is empty then it takes the data value
467 #If the buffer is empty then it takes the data value
468 if self.__buffer == None:
468 if self.__buffer == None:
469 self.__buffer = data
469 self.__buffer = data
470 self.__profIndex += 1
470 self.__profIndex += 1
471 return
471 return
472
472
473 #If the buffer length is lower than n then stakcing the data value
473 #If the buffer length is lower than n then stakcing the data value
474 if self.__profIndex < self.n:
474 if self.__profIndex < self.n:
475 self.__buffer = numpy.vstack((self.__buffer, data))
475 self.__buffer = numpy.vstack((self.__buffer, data))
476 self.__profIndex += 1
476 self.__profIndex += 1
477 return
477 return
478
478
479 #If the buffer length is equal to n then replacing the last buffer value with the data value
479 #If the buffer length is equal to n then replacing the last buffer value with the data value
480 self.__buffer = numpy.roll(self.__buffer, -1, axis=0)
480 self.__buffer = numpy.roll(self.__buffer, -1, axis=0)
481 self.__buffer[self.n-1] = data
481 self.__buffer[self.n-1] = data
482 self.__profIndex = self.n
482 self.__profIndex = self.n
483 return
483 return
484
484
485
485
486 def pushData(self):
486 def pushData(self):
487 """
487 """
488 Return the sum of the last profiles and the profiles used in the sum.
488 Return the sum of the last profiles and the profiles used in the sum.
489
489
490 Affected:
490 Affected:
491
491
492 self.__profileIndex
492 self.__profileIndex
493
493
494 """
494 """
495
495
496 if not self.__withOverapping:
496 if not self.__withOverapping:
497 data = self.__buffer
497 data = self.__buffer
498 n = self.__profIndex
498 n = self.__profIndex
499
499
500 self.__buffer = 0
500 self.__buffer = 0
501 self.__profIndex = 0
501 self.__profIndex = 0
502
502
503 return data, n
503 return data, n
504
504
505 #Integration with Overlapping
505 #Integration with Overlapping
506 data = numpy.sum(self.__buffer, axis=0)
506 data = numpy.sum(self.__buffer, axis=0)
507 n = self.__profIndex
507 n = self.__profIndex
508
508
509 return data, n
509 return data, n
510
510
511 def byProfiles(self, data):
511 def byProfiles(self, data):
512
512
513 self.__dataReady = False
513 self.__dataReady = False
514 avgdata = None
514 avgdata = None
515 n = None
515 n = None
516
516
517 self.putData(data)
517 self.putData(data)
518
518
519 if self.__profIndex == self.n:
519 if self.__profIndex == self.n:
520
520
521 avgdata, n = self.pushData()
521 avgdata, n = self.pushData()
522 self.__dataReady = True
522 self.__dataReady = True
523
523
524 return avgdata
524 return avgdata
525
525
526 def byTime(self, data, datatime):
526 def byTime(self, data, datatime):
527
527
528 self.__dataReady = False
528 self.__dataReady = False
529 avgdata = None
529 avgdata = None
530 n = None
530 n = None
531
531
532 self.putData(data)
532 self.putData(data)
533
533
534 if (datatime - self.__initime) >= self.__integrationtime:
534 if (datatime - self.__initime) >= self.__integrationtime:
535 avgdata, n = self.pushData()
535 avgdata, n = self.pushData()
536 self.n = n
536 self.n = n
537 self.__dataReady = True
537 self.__dataReady = True
538
538
539 return avgdata
539 return avgdata
540
540
541 def integrate(self, data, datatime=None):
541 def integrate(self, data, datatime=None):
542
542
543 if self.__initime == None:
543 if self.__initime == None:
544 self.__initime = datatime
544 self.__initime = datatime
545
545
546 if self.__byTime:
546 if self.__byTime:
547 avgdata = self.byTime(data, datatime)
547 avgdata = self.byTime(data, datatime)
548 else:
548 else:
549 avgdata = self.byProfiles(data)
549 avgdata = self.byProfiles(data)
550
550
551
551
552 self.__lastdatatime = datatime
552 self.__lastdatatime = datatime
553
553
554 if avgdata == None:
554 if avgdata == None:
555 return None, None
555 return None, None
556
556
557 avgdatatime = self.__initime
557 avgdatatime = self.__initime
558
558
559 deltatime = datatime -self.__lastdatatime
559 deltatime = datatime -self.__lastdatatime
560
560
561 if not self.__withOverapping:
561 if not self.__withOverapping:
562 self.__initime = datatime
562 self.__initime = datatime
563 else:
563 else:
564 self.__initime += deltatime
564 self.__initime += deltatime
565
565
566 return avgdata, avgdatatime
566 return avgdata, avgdatatime
567
567
568 def run(self, dataOut, **kwargs):
568 def run(self, dataOut, **kwargs):
569
569
570 if not self.__isConfig:
570 if not self.__isConfig:
571 self.setup(**kwargs)
571 self.setup(**kwargs)
572 self.__isConfig = True
572 self.__isConfig = True
573
573
574 avgdata, avgdatatime = self.integrate(dataOut.data, dataOut.utctime)
574 avgdata, avgdatatime = self.integrate(dataOut.data, dataOut.utctime)
575
575
576 # dataOut.timeInterval *= n
576 # dataOut.timeInterval *= n
577 dataOut.flagNoData = True
577 dataOut.flagNoData = True
578
578
579 if self.__dataReady:
579 if self.__dataReady:
580 dataOut.data = avgdata
580 dataOut.data = avgdata
581 dataOut.nCohInt *= self.n
581 dataOut.nCohInt *= self.n
582 dataOut.utctime = avgdatatime
582 dataOut.utctime = avgdatatime
583 dataOut.timeInterval = dataOut.ippSeconds * dataOut.nCohInt
583 dataOut.timeInterval = dataOut.ippSeconds * dataOut.nCohInt
584 dataOut.flagNoData = False
584 dataOut.flagNoData = False
585
585
586
586
587 class Decoder(Operation):
587 class Decoder(Operation):
588
588
589 __isConfig = False
589 __isConfig = False
590 __profIndex = 0
590 __profIndex = 0
591
591
592 code = None
592 code = None
593
593
594 nCode = None
594 nCode = None
595 nBaud = None
595 nBaud = None
596
596
597 def __init__(self):
597 def __init__(self):
598
598
599 self.__isConfig = False
599 self.__isConfig = False
600
600
601 def setup(self, code, shape):
601 def setup(self, code, shape):
602
602
603 self.__profIndex = 0
603 self.__profIndex = 0
604
604
605 self.code = code
605 self.code = code
606
606
607 self.nCode = len(code)
607 self.nCode = len(code)
608 self.nBaud = len(code[0])
608 self.nBaud = len(code[0])
609
609
610 self.__nChannels, self.__nHeis = shape
610 self.__nChannels, self.__nHeis = shape
611
611
612 __codeBuffer = numpy.zeros((self.nCode, self.__nHeis), dtype=numpy.complex)
612 __codeBuffer = numpy.zeros((self.nCode, self.__nHeis), dtype=numpy.complex)
613
613
614 __codeBuffer[:,0:self.nBaud] = self.code
614 __codeBuffer[:,0:self.nBaud] = self.code
615
615
616 self.fft_code = numpy.conj(numpy.fft.fft(__codeBuffer, axis=1))
616 self.fft_code = numpy.conj(numpy.fft.fft(__codeBuffer, axis=1))
617
617
618 self.ndatadec = self.__nHeis - self.nBaud + 1
618 self.ndatadec = self.__nHeis - self.nBaud + 1
619
619
620 self.datadecTime = numpy.zeros((self.__nChannels, self.ndatadec), dtype=numpy.complex)
620 self.datadecTime = numpy.zeros((self.__nChannels, self.ndatadec), dtype=numpy.complex)
621
621
622 def convolutionInFreq(self, data):
622 def convolutionInFreq(self, data):
623
623
624 fft_code = self.fft_code[self.__profIndex].reshape(1,-1)
624 fft_code = self.fft_code[self.__profIndex].reshape(1,-1)
625
625
626 fft_data = numpy.fft.fft(data, axis=1)
626 fft_data = numpy.fft.fft(data, axis=1)
627
627
628 conv = fft_data*fft_code
628 conv = fft_data*fft_code
629
629
630 data = numpy.fft.ifft(conv,axis=1)
630 data = numpy.fft.ifft(conv,axis=1)
631
631
632 datadec = data[:,:-self.nBaud+1]
632 datadec = data[:,:-self.nBaud+1]
633
633
634 return datadec
634 return datadec
635
635
636 def convolutionInFreqOpt(self, data):
636 def convolutionInFreqOpt(self, data):
637
637
638 fft_code = self.fft_code[self.__profIndex].reshape(1,-1)
638 fft_code = self.fft_code[self.__profIndex].reshape(1,-1)
639
639
640 data = cfunctions.decoder(fft_code, data)
640 data = cfunctions.decoder(fft_code, data)
641
641
642 datadec = data[:,:-self.nBaud+1]
642 datadec = data[:,:-self.nBaud+1]
643
643
644 return datadec
644 return datadec
645
645
646 def convolutionInTime(self, data):
646 def convolutionInTime(self, data):
647
647
648 code = self.code[self.__profIndex]
648 code = self.code[self.__profIndex]
649
649
650 for i in range(self.__nChannels):
650 for i in range(self.__nChannels):
651 self.datadecTime[i,:] = numpy.correlate(data[i,:], code, mode='valid')
651 self.datadecTime[i,:] = numpy.correlate(data[i,:], code, mode='valid')
652
652
653 return self.datadecTime
653 return self.datadecTime
654
654
655 def run(self, dataOut, code=None, nCode=None, nBaud=None, mode = 0):
655 def run(self, dataOut, code=None, nCode=None, nBaud=None, mode = 0):
656
656
657 if not self.__isConfig:
657 if not self.__isConfig:
658
658
659 if code == None:
659 if code == None:
660 code = dataOut.code
660 code = dataOut.code
661 else:
661 else:
662 code = numpy.array(code).reshape(nCode,nBaud)
662 code = numpy.array(code).reshape(nCode,nBaud)
663 dataOut.code = code
663 dataOut.code = code
664 dataOut.nCode = nCode
664 dataOut.nCode = nCode
665 dataOut.nBaud = nBaud
665 dataOut.nBaud = nBaud
666
666
667 if code == None:
667 if code == None:
668 return 1
668 return 1
669
669
670 self.setup(code, dataOut.data.shape)
670 self.setup(code, dataOut.data.shape)
671 self.__isConfig = True
671 self.__isConfig = True
672
672
673 if mode == 0:
673 if mode == 0:
674 datadec = self.convolutionInTime(dataOut.data)
674 datadec = self.convolutionInTime(dataOut.data)
675
675
676 if mode == 1:
676 if mode == 1:
677 datadec = self.convolutionInFreq(dataOut.data)
677 datadec = self.convolutionInFreq(dataOut.data)
678
678
679 if mode == 2:
679 if mode == 2:
680 datadec = self.convolutionInFreqOpt(dataOut.data)
680 datadec = self.convolutionInFreqOpt(dataOut.data)
681
681
682 dataOut.data = datadec
682 dataOut.data = datadec
683
683
684 dataOut.heightList = dataOut.heightList[0:self.ndatadec]
684 dataOut.heightList = dataOut.heightList[0:self.ndatadec]
685
685
686 dataOut.flagDecodeData = True #asumo q la data no esta decodificada
686 dataOut.flagDecodeData = True #asumo q la data no esta decodificada
687
687
688 if self.__profIndex == self.nCode-1:
688 if self.__profIndex == self.nCode-1:
689 self.__profIndex = 0
689 self.__profIndex = 0
690 return 1
690 return 1
691
691
692 self.__profIndex += 1
692 self.__profIndex += 1
693
693
694 return 1
694 return 1
695 # dataOut.flagDeflipData = True #asumo q la data no esta sin flip
695 # dataOut.flagDeflipData = True #asumo q la data no esta sin flip
696
696
697
697
698
698
699 class SpectraProc(ProcessingUnit):
699 class SpectraProc(ProcessingUnit):
700
700
701 def __init__(self):
701 def __init__(self):
702
702
703 self.objectDict = {}
703 self.objectDict = {}
704 self.buffer = None
704 self.buffer = None
705 self.firstdatatime = None
705 self.firstdatatime = None
706 self.profIndex = 0
706 self.profIndex = 0
707 self.dataOut = Spectra()
707 self.dataOut = Spectra()
708
708
709 def __updateObjFromInput(self):
709 def __updateObjFromInput(self):
710
710
711 self.dataOut.timeZone = self.dataIn.timeZone
711 self.dataOut.timeZone = self.dataIn.timeZone
712 self.dataOut.dstFlag = self.dataIn.dstFlag
712 self.dataOut.dstFlag = self.dataIn.dstFlag
713 self.dataOut.errorCount = self.dataIn.errorCount
713 self.dataOut.errorCount = self.dataIn.errorCount
714 self.dataOut.useLocalTime = self.dataIn.useLocalTime
714 self.dataOut.useLocalTime = self.dataIn.useLocalTime
715
715
716 self.dataOut.radarControllerHeaderObj = self.dataIn.radarControllerHeaderObj.copy()
716 self.dataOut.radarControllerHeaderObj = self.dataIn.radarControllerHeaderObj.copy()
717 self.dataOut.systemHeaderObj = self.dataIn.systemHeaderObj.copy()
717 self.dataOut.systemHeaderObj = self.dataIn.systemHeaderObj.copy()
718 self.dataOut.channelList = self.dataIn.channelList
718 self.dataOut.channelList = self.dataIn.channelList
719 self.dataOut.heightList = self.dataIn.heightList
719 self.dataOut.heightList = self.dataIn.heightList
720 self.dataOut.dtype = numpy.dtype([('real','<f4'),('imag','<f4')])
720 self.dataOut.dtype = numpy.dtype([('real','<f4'),('imag','<f4')])
721 # self.dataOut.nHeights = self.dataIn.nHeights
721 # self.dataOut.nHeights = self.dataIn.nHeights
722 # self.dataOut.nChannels = self.dataIn.nChannels
722 # self.dataOut.nChannels = self.dataIn.nChannels
723 self.dataOut.nBaud = self.dataIn.nBaud
723 self.dataOut.nBaud = self.dataIn.nBaud
724 self.dataOut.nCode = self.dataIn.nCode
724 self.dataOut.nCode = self.dataIn.nCode
725 self.dataOut.code = self.dataIn.code
725 self.dataOut.code = self.dataIn.code
726 self.dataOut.nProfiles = self.dataOut.nFFTPoints
726 self.dataOut.nProfiles = self.dataOut.nFFTPoints
727 # self.dataOut.channelIndexList = self.dataIn.channelIndexList
727 # self.dataOut.channelIndexList = self.dataIn.channelIndexList
728 self.dataOut.flagTimeBlock = self.dataIn.flagTimeBlock
728 self.dataOut.flagTimeBlock = self.dataIn.flagTimeBlock
729 self.dataOut.utctime = self.firstdatatime
729 self.dataOut.utctime = self.firstdatatime
730 self.dataOut.flagDecodeData = self.dataIn.flagDecodeData #asumo q la data esta decodificada
730 self.dataOut.flagDecodeData = self.dataIn.flagDecodeData #asumo q la data esta decodificada
731 self.dataOut.flagDeflipData = self.dataIn.flagDeflipData #asumo q la data esta sin flip
731 self.dataOut.flagDeflipData = self.dataIn.flagDeflipData #asumo q la data esta sin flip
732 # self.dataOut.flagShiftFFT = self.dataIn.flagShiftFFT
732 # self.dataOut.flagShiftFFT = self.dataIn.flagShiftFFT
733 self.dataOut.nCohInt = self.dataIn.nCohInt
733 self.dataOut.nCohInt = self.dataIn.nCohInt
734 self.dataOut.nIncohInt = 1
734 self.dataOut.nIncohInt = 1
735 self.dataOut.ippSeconds = self.dataIn.ippSeconds
735 self.dataOut.ippSeconds = self.dataIn.ippSeconds
736 self.dataOut.windowOfFilter = self.dataIn.windowOfFilter
736 self.dataOut.windowOfFilter = self.dataIn.windowOfFilter
737
737
738 self.dataOut.timeInterval = self.dataIn.timeInterval*self.dataOut.nFFTPoints*self.dataOut.nIncohInt
738 self.dataOut.timeInterval = self.dataIn.timeInterval*self.dataOut.nFFTPoints*self.dataOut.nIncohInt
739 self.dataOut.frequency = self.dataIn.frequency
739 self.dataOut.frequency = self.dataIn.frequency
740 self.dataOut.realtime = self.dataIn.realtime
740 self.dataOut.realtime = self.dataIn.realtime
741
741
742 def __getFft(self):
742 def __getFft(self):
743 """
743 """
744 Convierte valores de Voltaje a Spectra
744 Convierte valores de Voltaje a Spectra
745
745
746 Affected:
746 Affected:
747 self.dataOut.data_spc
747 self.dataOut.data_spc
748 self.dataOut.data_cspc
748 self.dataOut.data_cspc
749 self.dataOut.data_dc
749 self.dataOut.data_dc
750 self.dataOut.heightList
750 self.dataOut.heightList
751 self.profIndex
751 self.profIndex
752 self.buffer
752 self.buffer
753 self.dataOut.flagNoData
753 self.dataOut.flagNoData
754 """
754 """
755 fft_volt = numpy.fft.fft(self.buffer,n=self.dataOut.nFFTPoints,axis=1)
755 fft_volt = numpy.fft.fft(self.buffer,n=self.dataOut.nFFTPoints,axis=1)
756 fft_volt = fft_volt.astype(numpy.dtype('complex'))
756 fft_volt = fft_volt.astype(numpy.dtype('complex'))
757 dc = fft_volt[:,0,:]
757 dc = fft_volt[:,0,:]
758
758
759 #calculo de self-spectra
759 #calculo de self-spectra
760 fft_volt = numpy.fft.fftshift(fft_volt,axes=(1,))
760 fft_volt = numpy.fft.fftshift(fft_volt,axes=(1,))
761 spc = fft_volt * numpy.conjugate(fft_volt)
761 spc = fft_volt * numpy.conjugate(fft_volt)
762 spc = spc.real
762 spc = spc.real
763
763
764 blocksize = 0
764 blocksize = 0
765 blocksize += dc.size
765 blocksize += dc.size
766 blocksize += spc.size
766 blocksize += spc.size
767
767
768 cspc = None
768 cspc = None
769 pairIndex = 0
769 pairIndex = 0
770 if self.dataOut.pairsList != None:
770 if self.dataOut.pairsList != None:
771 #calculo de cross-spectra
771 #calculo de cross-spectra
772 cspc = numpy.zeros((self.dataOut.nPairs, self.dataOut.nFFTPoints, self.dataOut.nHeights), dtype='complex')
772 cspc = numpy.zeros((self.dataOut.nPairs, self.dataOut.nFFTPoints, self.dataOut.nHeights), dtype='complex')
773 for pair in self.dataOut.pairsList:
773 for pair in self.dataOut.pairsList:
774 cspc[pairIndex,:,:] = fft_volt[pair[0],:,:] * numpy.conjugate(fft_volt[pair[1],:,:])
774 cspc[pairIndex,:,:] = fft_volt[pair[0],:,:] * numpy.conjugate(fft_volt[pair[1],:,:])
775 pairIndex += 1
775 pairIndex += 1
776 blocksize += cspc.size
776 blocksize += cspc.size
777
777
778 self.dataOut.data_spc = spc
778 self.dataOut.data_spc = spc
779 self.dataOut.data_cspc = cspc
779 self.dataOut.data_cspc = cspc
780 self.dataOut.data_dc = dc
780 self.dataOut.data_dc = dc
781 self.dataOut.blockSize = blocksize
781 self.dataOut.blockSize = blocksize
782 self.dataOut.flagShiftFFT = False
782 self.dataOut.flagShiftFFT = False
783
783
784 def init(self, nProfiles=None, nFFTPoints=None, pairsList=None):
784 def init(self, nProfiles=None, nFFTPoints=None, pairsList=None, ippFactor=None):
785
785
786 self.dataOut.flagNoData = True
786 self.dataOut.flagNoData = True
787
787
788 if self.dataIn.type == "Spectra":
788 if self.dataIn.type == "Spectra":
789 self.dataOut.copy(self.dataIn)
789 self.dataOut.copy(self.dataIn)
790 return
790 return
791
791
792 if self.dataIn.type == "Voltage":
792 if self.dataIn.type == "Voltage":
793
793
794 if nFFTPoints == None:
794 if nFFTPoints == None:
795 raise ValueError, "This SpectraProc.init() need nFFTPoints input variable"
795 raise ValueError, "This SpectraProc.init() need nFFTPoints input variable"
796
796
797 if pairsList == None:
797 if pairsList == None:
798 nPairs = 0
798 nPairs = 0
799 else:
799 else:
800 nPairs = len(pairsList)
800 nPairs = len(pairsList)
801
801
802 if ippFactor == None:
803 ippFactor = 1
804 self.dataOut.ippFactor = ippFactor
805
802 self.dataOut.nFFTPoints = nFFTPoints
806 self.dataOut.nFFTPoints = nFFTPoints
803 self.dataOut.pairsList = pairsList
807 self.dataOut.pairsList = pairsList
804 self.dataOut.nPairs = nPairs
808 self.dataOut.nPairs = nPairs
805
809
806 if self.buffer == None:
810 if self.buffer == None:
807 self.buffer = numpy.zeros((self.dataIn.nChannels,
811 self.buffer = numpy.zeros((self.dataIn.nChannels,
808 nProfiles,
812 nProfiles,
809 self.dataIn.nHeights),
813 self.dataIn.nHeights),
810 dtype='complex')
814 dtype='complex')
811
815
812
816
813 self.buffer[:,self.profIndex,:] = self.dataIn.data.copy()
817 self.buffer[:,self.profIndex,:] = self.dataIn.data.copy()
814 self.profIndex += 1
818 self.profIndex += 1
815
819
816 if self.firstdatatime == None:
820 if self.firstdatatime == None:
817 self.firstdatatime = self.dataIn.utctime
821 self.firstdatatime = self.dataIn.utctime
818
822
819 if self.profIndex == nProfiles:
823 if self.profIndex == nProfiles:
820 self.__updateObjFromInput()
824 self.__updateObjFromInput()
821 self.__getFft()
825 self.__getFft()
822
826
823 self.dataOut.flagNoData = False
827 self.dataOut.flagNoData = False
824
828
825 self.buffer = None
829 self.buffer = None
826 self.firstdatatime = None
830 self.firstdatatime = None
827 self.profIndex = 0
831 self.profIndex = 0
828
832
829 return
833 return
830
834
831 raise ValuError, "The type object %s is not valid"%(self.dataIn.type)
835 raise ValueError, "The type object %s is not valid"%(self.dataIn.type)
832
836
833 def selectChannels(self, channelList):
837 def selectChannels(self, channelList):
834
838
835 channelIndexList = []
839 channelIndexList = []
836
840
837 for channel in channelList:
841 for channel in channelList:
838 index = self.dataOut.channelList.index(channel)
842 index = self.dataOut.channelList.index(channel)
839 channelIndexList.append(index)
843 channelIndexList.append(index)
840
844
841 self.selectChannelsByIndex(channelIndexList)
845 self.selectChannelsByIndex(channelIndexList)
842
846
843 def selectChannelsByIndex(self, channelIndexList):
847 def selectChannelsByIndex(self, channelIndexList):
844 """
848 """
845 Selecciona un bloque de datos en base a canales segun el channelIndexList
849 Selecciona un bloque de datos en base a canales segun el channelIndexList
846
850
847 Input:
851 Input:
848 channelIndexList : lista sencilla de canales a seleccionar por ej. [2,3,7]
852 channelIndexList : lista sencilla de canales a seleccionar por ej. [2,3,7]
849
853
850 Affected:
854 Affected:
851 self.dataOut.data_spc
855 self.dataOut.data_spc
852 self.dataOut.channelIndexList
856 self.dataOut.channelIndexList
853 self.dataOut.nChannels
857 self.dataOut.nChannels
854
858
855 Return:
859 Return:
856 None
860 None
857 """
861 """
858
862
859 for channelIndex in channelIndexList:
863 for channelIndex in channelIndexList:
860 if channelIndex not in self.dataOut.channelIndexList:
864 if channelIndex not in self.dataOut.channelIndexList:
861 print channelIndexList
865 print channelIndexList
862 raise ValueError, "The value %d in channelIndexList is not valid" %channelIndex
866 raise ValueError, "The value %d in channelIndexList is not valid" %channelIndex
863
867
864 nChannels = len(channelIndexList)
868 nChannels = len(channelIndexList)
865
869
866 data_spc = self.dataOut.data_spc[channelIndexList,:]
870 data_spc = self.dataOut.data_spc[channelIndexList,:]
867
871
868 self.dataOut.data_spc = data_spc
872 self.dataOut.data_spc = data_spc
869 self.dataOut.channelList = [self.dataOut.channelList[i] for i in channelIndexList]
873 self.dataOut.channelList = [self.dataOut.channelList[i] for i in channelIndexList]
870 # self.dataOut.nChannels = nChannels
874 # self.dataOut.nChannels = nChannels
871
875
872 return 1
876 return 1
873
877
874 def selectHeights(self, minHei, maxHei):
878 def selectHeights(self, minHei, maxHei):
875 """
879 """
876 Selecciona un bloque de datos en base a un grupo de valores de alturas segun el rango
880 Selecciona un bloque de datos en base a un grupo de valores de alturas segun el rango
877 minHei <= height <= maxHei
881 minHei <= height <= maxHei
878
882
879 Input:
883 Input:
880 minHei : valor minimo de altura a considerar
884 minHei : valor minimo de altura a considerar
881 maxHei : valor maximo de altura a considerar
885 maxHei : valor maximo de altura a considerar
882
886
883 Affected:
887 Affected:
884 Indirectamente son cambiados varios valores a travez del metodo selectHeightsByIndex
888 Indirectamente son cambiados varios valores a travez del metodo selectHeightsByIndex
885
889
886 Return:
890 Return:
887 1 si el metodo se ejecuto con exito caso contrario devuelve 0
891 1 si el metodo se ejecuto con exito caso contrario devuelve 0
888 """
892 """
889 if (minHei < self.dataOut.heightList[0]) or (minHei > maxHei):
893 if (minHei < self.dataOut.heightList[0]) or (minHei > maxHei):
890 raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
894 raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
891
895
892 if (maxHei > self.dataOut.heightList[-1]):
896 if (maxHei > self.dataOut.heightList[-1]):
893 maxHei = self.dataOut.heightList[-1]
897 maxHei = self.dataOut.heightList[-1]
894 # raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
898 # raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
895
899
896 minIndex = 0
900 minIndex = 0
897 maxIndex = 0
901 maxIndex = 0
898 heights = self.dataOut.heightList
902 heights = self.dataOut.heightList
899
903
900 inda = numpy.where(heights >= minHei)
904 inda = numpy.where(heights >= minHei)
901 indb = numpy.where(heights <= maxHei)
905 indb = numpy.where(heights <= maxHei)
902
906
903 try:
907 try:
904 minIndex = inda[0][0]
908 minIndex = inda[0][0]
905 except:
909 except:
906 minIndex = 0
910 minIndex = 0
907
911
908 try:
912 try:
909 maxIndex = indb[0][-1]
913 maxIndex = indb[0][-1]
910 except:
914 except:
911 maxIndex = len(heights)
915 maxIndex = len(heights)
912
916
913 self.selectHeightsByIndex(minIndex, maxIndex)
917 self.selectHeightsByIndex(minIndex, maxIndex)
914
918
915 return 1
919 return 1
916
920
917
921
918 def selectHeightsByIndex(self, minIndex, maxIndex):
922 def selectHeightsByIndex(self, minIndex, maxIndex):
919 """
923 """
920 Selecciona un bloque de datos en base a un grupo indices de alturas segun el rango
924 Selecciona un bloque de datos en base a un grupo indices de alturas segun el rango
921 minIndex <= index <= maxIndex
925 minIndex <= index <= maxIndex
922
926
923 Input:
927 Input:
924 minIndex : valor de indice minimo de altura a considerar
928 minIndex : valor de indice minimo de altura a considerar
925 maxIndex : valor de indice maximo de altura a considerar
929 maxIndex : valor de indice maximo de altura a considerar
926
930
927 Affected:
931 Affected:
928 self.dataOut.data_spc
932 self.dataOut.data_spc
929 self.dataOut.data_cspc
933 self.dataOut.data_cspc
930 self.dataOut.data_dc
934 self.dataOut.data_dc
931 self.dataOut.heightList
935 self.dataOut.heightList
932
936
933 Return:
937 Return:
934 1 si el metodo se ejecuto con exito caso contrario devuelve 0
938 1 si el metodo se ejecuto con exito caso contrario devuelve 0
935 """
939 """
936
940
937 if (minIndex < 0) or (minIndex > maxIndex):
941 if (minIndex < 0) or (minIndex > maxIndex):
938 raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
942 raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
939
943
940 if (maxIndex >= self.dataOut.nHeights):
944 if (maxIndex >= self.dataOut.nHeights):
941 maxIndex = self.dataOut.nHeights-1
945 maxIndex = self.dataOut.nHeights-1
942 # raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
946 # raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
943
947
944 nHeights = maxIndex - minIndex + 1
948 nHeights = maxIndex - minIndex + 1
945
949
946 #Spectra
950 #Spectra
947 data_spc = self.dataOut.data_spc[:,:,minIndex:maxIndex+1]
951 data_spc = self.dataOut.data_spc[:,:,minIndex:maxIndex+1]
948
952
949 data_cspc = None
953 data_cspc = None
950 if self.dataOut.data_cspc != None:
954 if self.dataOut.data_cspc != None:
951 data_cspc = self.dataOut.data_cspc[:,:,minIndex:maxIndex+1]
955 data_cspc = self.dataOut.data_cspc[:,:,minIndex:maxIndex+1]
952
956
953 data_dc = None
957 data_dc = None
954 if self.dataOut.data_dc != None:
958 if self.dataOut.data_dc != None:
955 data_dc = self.dataOut.data_dc[:,minIndex:maxIndex+1]
959 data_dc = self.dataOut.data_dc[:,minIndex:maxIndex+1]
956
960
957 self.dataOut.data_spc = data_spc
961 self.dataOut.data_spc = data_spc
958 self.dataOut.data_cspc = data_cspc
962 self.dataOut.data_cspc = data_cspc
959 self.dataOut.data_dc = data_dc
963 self.dataOut.data_dc = data_dc
960
964
961 self.dataOut.heightList = self.dataOut.heightList[minIndex:maxIndex+1]
965 self.dataOut.heightList = self.dataOut.heightList[minIndex:maxIndex+1]
962
966
963 return 1
967 return 1
964
968
965 def removeDC(self, mode = 1):
969 def removeDC(self, mode = 2):
970 jspectra = self.dataOut.data_spc
971 jcspectra = self.dataOut.data_cspc
972
973
974 num_chan = jspectra.shape[0]
975 num_hei = jspectra.shape[2]
966
976
967 dc_index = 0
977 if jcspectra != None:
968 freq_index = numpy.array([-2,-1,1,2])
978 jcspectraExist = True
969 data_spc = self.dataOut.data_spc
979 num_pairs = jcspectra.shape[0]
970 data_cspc = self.dataOut.data_cspc
980 else: jcspectraExist = False
971 data_dc = self.dataOut.data_dc
972
981
973 if self.dataOut.flagShiftFFT:
982 freq_dc = jspectra.shape[1]/2
974 dc_index += self.dataOut.nFFTPoints/2
983 ind_vel = numpy.array([-2,-1,1,2]) + freq_dc
975 freq_index += self.dataOut.nFFTPoints/2
984
985 if ind_vel[0]<0:
986 ind_vel[range(0,1)] = ind_vel[range(0,1)] + self.num_prof
976
987
977 if mode == 1:
988 if mode == 1:
978 data_spc[dc_index] = (data_spc[:,freq_index[1],:] + data_spc[:,freq_index[2],:])/2
989 jspectra[:freq_dc,:] = (jspectra[:ind_vel[1],:] + jspectra[:,ind_vel[2],:])/2 #CORRECCION
979 if data_cspc != None:
990
980 data_cspc[dc_index] = (data_cspc[:,freq_index[1],:] + data_cspc[:,freq_index[2],:])/2
991 if jcspectraExist:
981 return 1
992 jcspectra[:freq_dc,:] = (jcspectra[:ind_vel[1],:] + jcspectra[:,ind_vel[2],:])/2
982
993
983 if mode == 2:
994 if mode == 2:
984 pass
985
995
986 if mode == 3:
996 vel = numpy.array([-2,-1,1,2])
987 pass
997 xx = numpy.zeros([4,4])
988
998
989 raise ValueError, "mode parameter has to be 1, 2 or 3"
999 for fil in range(4):
1000 xx[fil,:] = vel[fil]**numpy.asarray(range(4))
990
1001
991 def removeInterference(self):
1002 xx_inv = numpy.linalg.inv(xx)
1003 xx_aux = xx_inv[0,:]
992
1004
993 pass
1005 for ich in range(num_chan):
1006 yy = jspectra[ich,ind_vel,:]
1007 jspectra[ich,freq_dc,:] = numpy.dot(xx_aux,yy)
1008
1009 junkid = jspectra[ich,freq_dc,:]<=0
1010 cjunkid = sum(junkid)
1011
1012 if cjunkid.any():
1013 jspectra[ich,freq_dc,junkid.nonzero()] = (jspectra[ich,ind_vel[1],junkid] + jspectra[ich,ind_vel[2],junkid])/2
1014
1015 if jcspectraExist:
1016 for ip in range(num_pairs):
1017 yy = jcspectra[ip,ind_vel,:]
1018 jcspectra[ip,freq_dc,:] = numpy.dot(xx_aux,yy)
1019
1020
1021 self.dataOut.data_spc = jspectra
1022 self.dataOut.data_cspc = jcspectra
1023
1024 return 1
1025
1026 def removeInterference(self, interf = 2,hei_interf = None, nhei_interf = None, offhei_interf = None):
1027
1028 jspectra = self.dataOut.data_spc
1029 jcspectra = self.dataOut.data_cspc
1030 jnoise = self.dataOut.getNoise()
1031 num_incoh = self.dataOut.nIncohInt
1032
1033 num_channel = jspectra.shape[0]
1034 num_prof = jspectra.shape[1]
1035 num_hei = jspectra.shape[2]
1036
1037 #hei_interf
1038 if hei_interf == None:
1039 count_hei = num_hei/2 #Como es entero no importa
1040 hei_interf = numpy.asmatrix(range(count_hei)) + num_hei - count_hei
1041 hei_interf = numpy.asarray(hei_interf)[0]
1042 #nhei_interf
1043 if (nhei_interf == None):
1044 nhei_interf = 5
1045 if (nhei_interf < 1):
1046 nhei_interf = 1
1047 if (nhei_interf > count_hei):
1048 nhei_interf = count_hei
1049 if (offhei_interf == None):
1050 offhei_interf = 0
1051
1052 ind_hei = range(num_hei)
1053 # mask_prof = numpy.asarray(range(num_prof - 2)) + 1
1054 # mask_prof[range(num_prof/2 - 1,len(mask_prof))] += 1
1055 mask_prof = numpy.asarray(range(num_prof))
1056 num_mask_prof = mask_prof.size
1057 comp_mask_prof = [0, num_prof/2]
1058
1059
1060 #noise_exist: Determina si la variable jnoise ha sido definida y contiene la informacion del ruido de cada canal
1061 if (jnoise.size < num_channel or numpy.isnan(jnoise).any()):
1062 jnoise = numpy.nan
1063 noise_exist = jnoise[0] < numpy.Inf
1064
1065 #Subrutina de Remocion de la Interferencia
1066 for ich in range(num_channel):
1067 #Se ordena los espectros segun su potencia (menor a mayor)
1068 power = jspectra[ich,mask_prof,:]
1069 power = power[:,hei_interf]
1070 power = power.sum(axis = 0)
1071 psort = power.ravel().argsort()
1072
1073 #Se estima la interferencia promedio en los Espectros de Potencia empleando
1074 junkspc_interf = jspectra[ich,:,hei_interf[psort[range(offhei_interf, nhei_interf + offhei_interf)]]]
1075
1076 if noise_exist:
1077 # tmp_noise = jnoise[ich] / num_prof
1078 tmp_noise = jnoise[ich]
1079 junkspc_interf = junkspc_interf - tmp_noise
1080 #junkspc_interf[:,comp_mask_prof] = 0
1081
1082 jspc_interf = junkspc_interf.sum(axis = 0) / nhei_interf
1083 jspc_interf = jspc_interf.transpose()
1084 #Calculando el espectro de interferencia promedio
1085 noiseid = numpy.where(jspc_interf <= tmp_noise/ math.sqrt(num_incoh))
1086 noiseid = noiseid[0]
1087 cnoiseid = noiseid.size
1088 interfid = numpy.where(jspc_interf > tmp_noise/ math.sqrt(num_incoh))
1089 interfid = interfid[0]
1090 cinterfid = interfid.size
1091
1092 if (cnoiseid > 0): jspc_interf[noiseid] = 0
1093
1094 #Expandiendo los perfiles a limpiar
1095 if (cinterfid > 0):
1096 new_interfid = (numpy.r_[interfid - 1, interfid, interfid + 1] + num_prof)%num_prof
1097 new_interfid = numpy.asarray(new_interfid)
1098 new_interfid = {x for x in new_interfid}
1099 new_interfid = numpy.array(list(new_interfid))
1100 new_cinterfid = new_interfid.size
1101 else: new_cinterfid = 0
1102
1103 for ip in range(new_cinterfid):
1104 ind = junkspc_interf[:,new_interfid[ip]].ravel().argsort()
1105 jspc_interf[new_interfid[ip]] = junkspc_interf[ind[nhei_interf/2],new_interfid[ip]]
1106
1107
1108 jspectra[ich,:,ind_hei] = jspectra[ich,:,ind_hei] - jspc_interf #Corregir indices
1109
1110 #Removiendo la interferencia del punto de mayor interferencia
1111 ListAux = jspc_interf[mask_prof].tolist()
1112 maxid = ListAux.index(max(ListAux))
1113
1114
1115 if cinterfid > 0:
1116 for ip in range(cinterfid*(interf == 2) - 1):
1117 ind = (jspectra[ich,interfid[ip],:] < tmp_noise*(1 + 1/math.sqrt(num_incoh))).nonzero()
1118 cind = len(ind)
1119
1120 if (cind > 0):
1121 jspectra[ich,interfid[ip],ind] = tmp_noise*(1 + (numpy.random.uniform(cind) - 0.5)/math.sqrt(num_incoh))
1122
1123 ind = numpy.array([-2,-1,1,2])
1124 xx = numpy.zeros([4,4])
1125
1126 for id1 in range(4):
1127 xx[:,id1] = ind[id1]**numpy.asarray(range(4))
1128
1129 xx_inv = numpy.linalg.inv(xx)
1130 xx = xx_inv[:,0]
1131 ind = (ind + maxid + num_mask_prof)%num_mask_prof
1132 yy = jspectra[ich,mask_prof[ind],:]
1133 jspectra[ich,mask_prof[maxid],:] = numpy.dot(yy.transpose(),xx)
1134
1135
1136 indAux = (jspectra[ich,:,:] < tmp_noise*(1-1/math.sqrt(num_incoh))).nonzero()
1137 jspectra[ich,indAux[0],indAux[1]] = tmp_noise * (1 - 1/math.sqrt(num_incoh))
1138
1139 #Remocion de Interferencia en el Cross Spectra
1140 if jcspectra == None: return jspectra, jcspectra
1141 num_pairs = jcspectra.size/(num_prof*num_hei)
1142 jcspectra = jcspectra.reshape(num_pairs, num_prof, num_hei)
1143
1144 for ip in range(num_pairs):
1145
1146 #-------------------------------------------
1147
1148 cspower = numpy.abs(jcspectra[ip,mask_prof,:])
1149 cspower = cspower[:,hei_interf]
1150 cspower = cspower.sum(axis = 0)
1151
1152 cspsort = cspower.ravel().argsort()
1153 junkcspc_interf = jcspectra[ip,:,hei_interf[cspsort[range(offhei_interf, nhei_interf + offhei_interf)]]]
1154 junkcspc_interf = junkcspc_interf.transpose()
1155 jcspc_interf = junkcspc_interf.sum(axis = 1)/nhei_interf
1156
1157 ind = numpy.abs(jcspc_interf[mask_prof]).ravel().argsort()
1158
1159 median_real = numpy.median(numpy.real(junkcspc_interf[mask_prof[ind[range(3*num_prof/4)]],:]))
1160 median_imag = numpy.median(numpy.imag(junkcspc_interf[mask_prof[ind[range(3*num_prof/4)]],:]))
1161 junkcspc_interf[comp_mask_prof,:] = numpy.complex(median_real, median_imag)
1162
1163 for iprof in range(num_prof):
1164 ind = numpy.abs(junkcspc_interf[iprof,:]).ravel().argsort()
1165 jcspc_interf[iprof] = junkcspc_interf[iprof, ind[nhei_interf/2]]
1166
1167 #Removiendo la Interferencia
1168 jcspectra[ip,:,ind_hei] = jcspectra[ip,:,ind_hei] - jcspc_interf
1169
1170 ListAux = numpy.abs(jcspc_interf[mask_prof]).tolist()
1171 maxid = ListAux.index(max(ListAux))
1172
1173 ind = numpy.array([-2,-1,1,2])
1174 xx = numpy.zeros([4,4])
1175
1176 for id1 in range(4):
1177 xx[:,id1] = ind[id1]**numpy.asarray(range(4))
1178
1179 xx_inv = numpy.linalg.inv(xx)
1180 xx = xx_inv[:,0]
1181
1182 ind = (ind + maxid + num_mask_prof)%num_mask_prof
1183 yy = jcspectra[ip,mask_prof[ind],:]
1184 jcspectra[ip,mask_prof[maxid],:] = numpy.dot(yy.transpose(),xx)
1185
1186 #Guardar Resultados
1187 self.dataOut.data_spc = jspectra
1188 self.dataOut.data_cspc = jcspectra
1189
1190 return 1
994
1191
995 def setRadarFrequency(self, frequency=None):
1192 def setRadarFrequency(self, frequency=None):
996 if frequency != None:
1193 if frequency != None:
997 self.dataOut.frequency = frequency
1194 self.dataOut.frequency = frequency
998
1195
999 return 1
1196 return 1
1000
1197
1001
1198
1002 class IncohInt(Operation):
1199 class IncohInt(Operation):
1003
1200
1004
1201
1005 __profIndex = 0
1202 __profIndex = 0
1006 __withOverapping = False
1203 __withOverapping = False
1007
1204
1008 __byTime = False
1205 __byTime = False
1009 __initime = None
1206 __initime = None
1010 __lastdatatime = None
1207 __lastdatatime = None
1011 __integrationtime = None
1208 __integrationtime = None
1012
1209
1013 __buffer_spc = None
1210 __buffer_spc = None
1014 __buffer_cspc = None
1211 __buffer_cspc = None
1015 __buffer_dc = None
1212 __buffer_dc = None
1016
1213
1017 __dataReady = False
1214 __dataReady = False
1018
1215
1019 __timeInterval = None
1216 __timeInterval = None
1020
1217
1021 n = None
1218 n = None
1022
1219
1023
1220
1024
1221
1025 def __init__(self):
1222 def __init__(self):
1026
1223
1027 self.__isConfig = False
1224 self.__isConfig = False
1028
1225
1029 def setup(self, n=None, timeInterval=None, overlapping=False):
1226 def setup(self, n=None, timeInterval=None, overlapping=False):
1030 """
1227 """
1031 Set the parameters of the integration class.
1228 Set the parameters of the integration class.
1032
1229
1033 Inputs:
1230 Inputs:
1034
1231
1035 n : Number of coherent integrations
1232 n : Number of coherent integrations
1036 timeInterval : Time of integration. If the parameter "n" is selected this one does not work
1233 timeInterval : Time of integration. If the parameter "n" is selected this one does not work
1037 overlapping :
1234 overlapping :
1038
1235
1039 """
1236 """
1040
1237
1041 self.__initime = None
1238 self.__initime = None
1042 self.__lastdatatime = 0
1239 self.__lastdatatime = 0
1043 self.__buffer_spc = None
1240 self.__buffer_spc = None
1044 self.__buffer_cspc = None
1241 self.__buffer_cspc = None
1045 self.__buffer_dc = None
1242 self.__buffer_dc = None
1046 self.__dataReady = False
1243 self.__dataReady = False
1047
1244
1048
1245
1049 if n == None and timeInterval == None:
1246 if n == None and timeInterval == None:
1050 raise ValueError, "n or timeInterval should be specified ..."
1247 raise ValueError, "n or timeInterval should be specified ..."
1051
1248
1052 if n != None:
1249 if n != None:
1053 self.n = n
1250 self.n = n
1054 self.__byTime = False
1251 self.__byTime = False
1055 else:
1252 else:
1056 self.__integrationtime = timeInterval #if (type(timeInterval)!=integer) -> change this line
1253 self.__integrationtime = timeInterval #if (type(timeInterval)!=integer) -> change this line
1057 self.n = 9999
1254 self.n = 9999
1058 self.__byTime = True
1255 self.__byTime = True
1059
1256
1060 if overlapping:
1257 if overlapping:
1061 self.__withOverapping = True
1258 self.__withOverapping = True
1062 else:
1259 else:
1063 self.__withOverapping = False
1260 self.__withOverapping = False
1064 self.__buffer_spc = 0
1261 self.__buffer_spc = 0
1065 self.__buffer_cspc = 0
1262 self.__buffer_cspc = 0
1066 self.__buffer_dc = 0
1263 self.__buffer_dc = 0
1067
1264
1068 self.__profIndex = 0
1265 self.__profIndex = 0
1069
1266
1070 def putData(self, data_spc, data_cspc, data_dc):
1267 def putData(self, data_spc, data_cspc, data_dc):
1071
1268
1072 """
1269 """
1073 Add a profile to the __buffer_spc and increase in one the __profileIndex
1270 Add a profile to the __buffer_spc and increase in one the __profileIndex
1074
1271
1075 """
1272 """
1076
1273
1077 if not self.__withOverapping:
1274 if not self.__withOverapping:
1078 self.__buffer_spc += data_spc
1275 self.__buffer_spc += data_spc
1079
1276
1080 if data_cspc == None:
1277 if data_cspc == None:
1081 self.__buffer_cspc = None
1278 self.__buffer_cspc = None
1082 else:
1279 else:
1083 self.__buffer_cspc += data_cspc
1280 self.__buffer_cspc += data_cspc
1084
1281
1085 if data_dc == None:
1282 if data_dc == None:
1086 self.__buffer_dc = None
1283 self.__buffer_dc = None
1087 else:
1284 else:
1088 self.__buffer_dc += data_dc
1285 self.__buffer_dc += data_dc
1089
1286
1090 self.__profIndex += 1
1287 self.__profIndex += 1
1091 return
1288 return
1092
1289
1093 #Overlapping data
1290 #Overlapping data
1094 nChannels, nFFTPoints, nHeis = data_spc.shape
1291 nChannels, nFFTPoints, nHeis = data_spc.shape
1095 data_spc = numpy.reshape(data_spc, (1, nChannels, nFFTPoints, nHeis))
1292 data_spc = numpy.reshape(data_spc, (1, nChannels, nFFTPoints, nHeis))
1096 if data_cspc != None:
1293 if data_cspc != None:
1097 data_cspc = numpy.reshape(data_cspc, (1, -1, nFFTPoints, nHeis))
1294 data_cspc = numpy.reshape(data_cspc, (1, -1, nFFTPoints, nHeis))
1098 if data_dc != None:
1295 if data_dc != None:
1099 data_dc = numpy.reshape(data_dc, (1, -1, nHeis))
1296 data_dc = numpy.reshape(data_dc, (1, -1, nHeis))
1100
1297
1101 #If the buffer is empty then it takes the data value
1298 #If the buffer is empty then it takes the data value
1102 if self.__buffer_spc == None:
1299 if self.__buffer_spc == None:
1103 self.__buffer_spc = data_spc
1300 self.__buffer_spc = data_spc
1104
1301
1105 if data_cspc == None:
1302 if data_cspc == None:
1106 self.__buffer_cspc = None
1303 self.__buffer_cspc = None
1107 else:
1304 else:
1108 self.__buffer_cspc += data_cspc
1305 self.__buffer_cspc += data_cspc
1109
1306
1110 if data_dc == None:
1307 if data_dc == None:
1111 self.__buffer_dc = None
1308 self.__buffer_dc = None
1112 else:
1309 else:
1113 self.__buffer_dc += data_dc
1310 self.__buffer_dc += data_dc
1114
1311
1115 self.__profIndex += 1
1312 self.__profIndex += 1
1116 return
1313 return
1117
1314
1118 #If the buffer length is lower than n then stakcing the data value
1315 #If the buffer length is lower than n then stakcing the data value
1119 if self.__profIndex < self.n:
1316 if self.__profIndex < self.n:
1120 self.__buffer_spc = numpy.vstack((self.__buffer_spc, data_spc))
1317 self.__buffer_spc = numpy.vstack((self.__buffer_spc, data_spc))
1121
1318
1122 if data_cspc != None:
1319 if data_cspc != None:
1123 self.__buffer_cspc = numpy.vstack((self.__buffer_cspc, data_cspc))
1320 self.__buffer_cspc = numpy.vstack((self.__buffer_cspc, data_cspc))
1124
1321
1125 if data_dc != None:
1322 if data_dc != None:
1126 self.__buffer_dc = numpy.vstack((self.__buffer_dc, data_dc))
1323 self.__buffer_dc = numpy.vstack((self.__buffer_dc, data_dc))
1127
1324
1128 self.__profIndex += 1
1325 self.__profIndex += 1
1129 return
1326 return
1130
1327
1131 #If the buffer length is equal to n then replacing the last buffer value with the data value
1328 #If the buffer length is equal to n then replacing the last buffer value with the data value
1132 self.__buffer_spc = numpy.roll(self.__buffer_spc, -1, axis=0)
1329 self.__buffer_spc = numpy.roll(self.__buffer_spc, -1, axis=0)
1133 self.__buffer_spc[self.n-1] = data_spc
1330 self.__buffer_spc[self.n-1] = data_spc
1134
1331
1135 if data_cspc != None:
1332 if data_cspc != None:
1136 self.__buffer_cspc = numpy.roll(self.__buffer_cspc, -1, axis=0)
1333 self.__buffer_cspc = numpy.roll(self.__buffer_cspc, -1, axis=0)
1137 self.__buffer_cspc[self.n-1] = data_cspc
1334 self.__buffer_cspc[self.n-1] = data_cspc
1138
1335
1139 if data_dc != None:
1336 if data_dc != None:
1140 self.__buffer_dc = numpy.roll(self.__buffer_dc, -1, axis=0)
1337 self.__buffer_dc = numpy.roll(self.__buffer_dc, -1, axis=0)
1141 self.__buffer_dc[self.n-1] = data_dc
1338 self.__buffer_dc[self.n-1] = data_dc
1142
1339
1143 self.__profIndex = self.n
1340 self.__profIndex = self.n
1144 return
1341 return
1145
1342
1146
1343
1147 def pushData(self):
1344 def pushData(self):
1148 """
1345 """
1149 Return the sum of the last profiles and the profiles used in the sum.
1346 Return the sum of the last profiles and the profiles used in the sum.
1150
1347
1151 Affected:
1348 Affected:
1152
1349
1153 self.__profileIndex
1350 self.__profileIndex
1154
1351
1155 """
1352 """
1156 data_spc = None
1353 data_spc = None
1157 data_cspc = None
1354 data_cspc = None
1158 data_dc = None
1355 data_dc = None
1159
1356
1160 if not self.__withOverapping:
1357 if not self.__withOverapping:
1161 data_spc = self.__buffer_spc
1358 data_spc = self.__buffer_spc
1162 data_cspc = self.__buffer_cspc
1359 data_cspc = self.__buffer_cspc
1163 data_dc = self.__buffer_dc
1360 data_dc = self.__buffer_dc
1164
1361
1165 n = self.__profIndex
1362 n = self.__profIndex
1166
1363
1167 self.__buffer_spc = 0
1364 self.__buffer_spc = 0
1168 self.__buffer_cspc = 0
1365 self.__buffer_cspc = 0
1169 self.__buffer_dc = 0
1366 self.__buffer_dc = 0
1170 self.__profIndex = 0
1367 self.__profIndex = 0
1171
1368
1172 return data_spc, data_cspc, data_dc, n
1369 return data_spc, data_cspc, data_dc, n
1173
1370
1174 #Integration with Overlapping
1371 #Integration with Overlapping
1175 data_spc = numpy.sum(self.__buffer_spc, axis=0)
1372 data_spc = numpy.sum(self.__buffer_spc, axis=0)
1176
1373
1177 if self.__buffer_cspc != None:
1374 if self.__buffer_cspc != None:
1178 data_cspc = numpy.sum(self.__buffer_cspc, axis=0)
1375 data_cspc = numpy.sum(self.__buffer_cspc, axis=0)
1179
1376
1180 if self.__buffer_dc != None:
1377 if self.__buffer_dc != None:
1181 data_dc = numpy.sum(self.__buffer_dc, axis=0)
1378 data_dc = numpy.sum(self.__buffer_dc, axis=0)
1182
1379
1183 n = self.__profIndex
1380 n = self.__profIndex
1184
1381
1185 return data_spc, data_cspc, data_dc, n
1382 return data_spc, data_cspc, data_dc, n
1186
1383
1187 def byProfiles(self, *args):
1384 def byProfiles(self, *args):
1188
1385
1189 self.__dataReady = False
1386 self.__dataReady = False
1190 avgdata_spc = None
1387 avgdata_spc = None
1191 avgdata_cspc = None
1388 avgdata_cspc = None
1192 avgdata_dc = None
1389 avgdata_dc = None
1193 n = None
1390 n = None
1194
1391
1195 self.putData(*args)
1392 self.putData(*args)
1196
1393
1197 if self.__profIndex == self.n:
1394 if self.__profIndex == self.n:
1198
1395
1199 avgdata_spc, avgdata_cspc, avgdata_dc, n = self.pushData()
1396 avgdata_spc, avgdata_cspc, avgdata_dc, n = self.pushData()
1200 self.__dataReady = True
1397 self.__dataReady = True
1201
1398
1202 return avgdata_spc, avgdata_cspc, avgdata_dc
1399 return avgdata_spc, avgdata_cspc, avgdata_dc
1203
1400
1204 def byTime(self, datatime, *args):
1401 def byTime(self, datatime, *args):
1205
1402
1206 self.__dataReady = False
1403 self.__dataReady = False
1207 avgdata_spc = None
1404 avgdata_spc = None
1208 avgdata_cspc = None
1405 avgdata_cspc = None
1209 avgdata_dc = None
1406 avgdata_dc = None
1210 n = None
1407 n = None
1211
1408
1212 self.putData(*args)
1409 self.putData(*args)
1213
1410
1214 if (datatime - self.__initime) >= self.__integrationtime:
1411 if (datatime - self.__initime) >= self.__integrationtime:
1215 avgdata_spc, avgdata_cspc, avgdata_dc, n = self.pushData()
1412 avgdata_spc, avgdata_cspc, avgdata_dc, n = self.pushData()
1216 self.n = n
1413 self.n = n
1217 self.__dataReady = True
1414 self.__dataReady = True
1218
1415
1219 return avgdata_spc, avgdata_cspc, avgdata_dc
1416 return avgdata_spc, avgdata_cspc, avgdata_dc
1220
1417
1221 def integrate(self, datatime, *args):
1418 def integrate(self, datatime, *args):
1222
1419
1223 if self.__initime == None:
1420 if self.__initime == None:
1224 self.__initime = datatime
1421 self.__initime = datatime
1225
1422
1226 if self.__byTime:
1423 if self.__byTime:
1227 avgdata_spc, avgdata_cspc, avgdata_dc = self.byTime(datatime, *args)
1424 avgdata_spc, avgdata_cspc, avgdata_dc = self.byTime(datatime, *args)
1228 else:
1425 else:
1229 avgdata_spc, avgdata_cspc, avgdata_dc = self.byProfiles(*args)
1426 avgdata_spc, avgdata_cspc, avgdata_dc = self.byProfiles(*args)
1230
1427
1231 self.__lastdatatime = datatime
1428 self.__lastdatatime = datatime
1232
1429
1233 if avgdata_spc == None:
1430 if avgdata_spc == None:
1234 return None, None, None, None
1431 return None, None, None, None
1235
1432
1236 avgdatatime = self.__initime
1433 avgdatatime = self.__initime
1237 try:
1434 try:
1238 self.__timeInterval = (self.__lastdatatime - self.__initime)/(self.n - 1)
1435 self.__timeInterval = (self.__lastdatatime - self.__initime)/(self.n - 1)
1239 except:
1436 except:
1240 self.__timeInterval = self.__lastdatatime - self.__initime
1437 self.__timeInterval = self.__lastdatatime - self.__initime
1241
1438
1242 deltatime = datatime -self.__lastdatatime
1439 deltatime = datatime -self.__lastdatatime
1243
1440
1244 if not self.__withOverapping:
1441 if not self.__withOverapping:
1245 self.__initime = datatime
1442 self.__initime = datatime
1246 else:
1443 else:
1247 self.__initime += deltatime
1444 self.__initime += deltatime
1248
1445
1249 return avgdatatime, avgdata_spc, avgdata_cspc, avgdata_dc
1446 return avgdatatime, avgdata_spc, avgdata_cspc, avgdata_dc
1250
1447
1251 def run(self, dataOut, n=None, timeInterval=None, overlapping=False):
1448 def run(self, dataOut, n=None, timeInterval=None, overlapping=False):
1252
1449
1253 if n==1:
1450 if n==1:
1254 dataOut.flagNoData = False
1451 dataOut.flagNoData = False
1255 return
1452 return
1256
1453
1257 if not self.__isConfig:
1454 if not self.__isConfig:
1258 self.setup(n, timeInterval, overlapping)
1455 self.setup(n, timeInterval, overlapping)
1259 self.__isConfig = True
1456 self.__isConfig = True
1260
1457
1261 avgdatatime, avgdata_spc, avgdata_cspc, avgdata_dc = self.integrate(dataOut.utctime,
1458 avgdatatime, avgdata_spc, avgdata_cspc, avgdata_dc = self.integrate(dataOut.utctime,
1262 dataOut.data_spc,
1459 dataOut.data_spc,
1263 dataOut.data_cspc,
1460 dataOut.data_cspc,
1264 dataOut.data_dc)
1461 dataOut.data_dc)
1265
1462
1266 # dataOut.timeInterval *= n
1463 # dataOut.timeInterval *= n
1267 dataOut.flagNoData = True
1464 dataOut.flagNoData = True
1268
1465
1269 if self.__dataReady:
1466 if self.__dataReady:
1270
1467
1271 dataOut.data_spc = avgdata_spc
1468 dataOut.data_spc = avgdata_spc
1272 dataOut.data_cspc = avgdata_cspc
1469 dataOut.data_cspc = avgdata_cspc
1273 dataOut.data_dc = avgdata_dc
1470 dataOut.data_dc = avgdata_dc
1274
1471
1275 dataOut.nIncohInt *= self.n
1472 dataOut.nIncohInt *= self.n
1276 dataOut.utctime = avgdatatime
1473 dataOut.utctime = avgdatatime
1277 #dataOut.timeInterval = dataOut.ippSeconds * dataOut.nCohInt * dataOut.nIncohInt * dataOut.nFFTPoints
1474 #dataOut.timeInterval = dataOut.ippSeconds * dataOut.nCohInt * dataOut.nIncohInt * dataOut.nFFTPoints
1278 dataOut.timeInterval = self.__timeInterval*self.n
1475 dataOut.timeInterval = self.__timeInterval*self.n
1279 dataOut.flagNoData = False
1476 dataOut.flagNoData = False
1280
1477
1281 class ProfileConcat(Operation):
1478 class ProfileConcat(Operation):
1282
1479
1283 __isConfig = False
1480 __isConfig = False
1284 buffer = None
1481 buffer = None
1285
1482
1286 def __init__(self):
1483 def __init__(self):
1287
1484
1288 self.profileIndex = 0
1485 self.profileIndex = 0
1289
1486
1290 def reset(self):
1487 def reset(self):
1291 self.buffer = numpy.zeros_like(self.buffer)
1488 self.buffer = numpy.zeros_like(self.buffer)
1292 self.start_index = 0
1489 self.start_index = 0
1293 self.times = 1
1490 self.times = 1
1294
1491
1295 def setup(self, data, m, n=1):
1492 def setup(self, data, m, n=1):
1296 self.buffer = numpy.zeros((data.shape[0],data.shape[1]*m),dtype=type(data[0,0]))
1493 self.buffer = numpy.zeros((data.shape[0],data.shape[1]*m),dtype=type(data[0,0]))
1297 self.profiles = data.shape[1]
1494 self.profiles = data.shape[1]
1298 self.start_index = 0
1495 self.start_index = 0
1299 self.times = 1
1496 self.times = 1
1300
1497
1301 def concat(self, data):
1498 def concat(self, data):
1302
1499
1303 self.buffer[:,self.start_index:self.profiles*self.times] = data.copy()
1500 self.buffer[:,self.start_index:self.profiles*self.times] = data.copy()
1304 self.start_index = self.start_index + self.profiles
1501 self.start_index = self.start_index + self.profiles
1305
1502
1306 def run(self, dataOut, m):
1503 def run(self, dataOut, m):
1307
1504
1308 dataOut.flagNoData = True
1505 dataOut.flagNoData = True
1309
1506
1310 if not self.__isConfig:
1507 if not self.__isConfig:
1311 self.setup(dataOut.data, m, 1)
1508 self.setup(dataOut.data, m, 1)
1312 self.__isConfig = True
1509 self.__isConfig = True
1313
1510
1314 self.concat(dataOut.data)
1511 self.concat(dataOut.data)
1315 self.times += 1
1512 self.times += 1
1316 if self.times > m:
1513 if self.times > m:
1317 dataOut.data = self.buffer
1514 dataOut.data = self.buffer
1318 self.reset()
1515 self.reset()
1319 dataOut.flagNoData = False
1516 dataOut.flagNoData = False
1320 # se deben actualizar mas propiedades del header y del objeto dataOut, por ejemplo, las alturas
1517 # se deben actualizar mas propiedades del header y del objeto dataOut, por ejemplo, las alturas
1321 deltaHeight = dataOut.heightList[1] - dataOut.heightList[0]
1518 deltaHeight = dataOut.heightList[1] - dataOut.heightList[0]
1322 xf = dataOut.heightList[0] + dataOut.nHeights * deltaHeight * 5
1519 xf = dataOut.heightList[0] + dataOut.nHeights * deltaHeight * 5
1323 dataOut.heightList = numpy.arange(dataOut.heightList[0], xf, deltaHeight)
1520 dataOut.heightList = numpy.arange(dataOut.heightList[0], xf, deltaHeight)
1324
1521
1325
1522
1326
1523
1327 class ProfileSelector(Operation):
1524 class ProfileSelector(Operation):
1328
1525
1329 profileIndex = None
1526 profileIndex = None
1330 # Tamanho total de los perfiles
1527 # Tamanho total de los perfiles
1331 nProfiles = None
1528 nProfiles = None
1332
1529
1333 def __init__(self):
1530 def __init__(self):
1334
1531
1335 self.profileIndex = 0
1532 self.profileIndex = 0
1336
1533
1337 def incIndex(self):
1534 def incIndex(self):
1338 self.profileIndex += 1
1535 self.profileIndex += 1
1339
1536
1340 if self.profileIndex >= self.nProfiles:
1537 if self.profileIndex >= self.nProfiles:
1341 self.profileIndex = 0
1538 self.profileIndex = 0
1342
1539
1343 def isProfileInRange(self, minIndex, maxIndex):
1540 def isProfileInRange(self, minIndex, maxIndex):
1344
1541
1345 if self.profileIndex < minIndex:
1542 if self.profileIndex < minIndex:
1346 return False
1543 return False
1347
1544
1348 if self.profileIndex > maxIndex:
1545 if self.profileIndex > maxIndex:
1349 return False
1546 return False
1350
1547
1351 return True
1548 return True
1352
1549
1353 def isProfileInList(self, profileList):
1550 def isProfileInList(self, profileList):
1354
1551
1355 if self.profileIndex not in profileList:
1552 if self.profileIndex not in profileList:
1356 return False
1553 return False
1357
1554
1358 return True
1555 return True
1359
1556
1360 def run(self, dataOut, profileList=None, profileRangeList=None):
1557 def run(self, dataOut, profileList=None, profileRangeList=None):
1361
1558
1362 dataOut.flagNoData = True
1559 dataOut.flagNoData = True
1363 self.nProfiles = dataOut.nProfiles
1560 self.nProfiles = dataOut.nProfiles
1364
1561
1365 if profileList != None:
1562 if profileList != None:
1366 if self.isProfileInList(profileList):
1563 if self.isProfileInList(profileList):
1367 dataOut.flagNoData = False
1564 dataOut.flagNoData = False
1368
1565
1369 self.incIndex()
1566 self.incIndex()
1370 return 1
1567 return 1
1371
1568
1372
1569
1373 elif profileRangeList != None:
1570 elif profileRangeList != None:
1374 minIndex = profileRangeList[0]
1571 minIndex = profileRangeList[0]
1375 maxIndex = profileRangeList[1]
1572 maxIndex = profileRangeList[1]
1376 if self.isProfileInRange(minIndex, maxIndex):
1573 if self.isProfileInRange(minIndex, maxIndex):
1377 dataOut.flagNoData = False
1574 dataOut.flagNoData = False
1378
1575
1379 self.incIndex()
1576 self.incIndex()
1380 return 1
1577 return 1
1381
1578
1382 else:
1579 else:
1383 raise ValueError, "ProfileSelector needs profileList or profileRangeList"
1580 raise ValueError, "ProfileSelector needs profileList or profileRangeList"
1384
1581
1385 return 0
1582 return 0
1386
1583
1387 class SpectraHeisProc(ProcessingUnit):
1584 class SpectraHeisProc(ProcessingUnit):
1388 def __init__(self):
1585 def __init__(self):
1389 self.objectDict = {}
1586 self.objectDict = {}
1390 # self.buffer = None
1587 # self.buffer = None
1391 # self.firstdatatime = None
1588 # self.firstdatatime = None
1392 # self.profIndex = 0
1589 # self.profIndex = 0
1393 self.dataOut = SpectraHeis()
1590 self.dataOut = SpectraHeis()
1394
1591
1395 def __updateObjFromInput(self):
1592 def __updateObjFromInput(self):
1396 self.dataOut.timeZone = self.dataIn.timeZone
1593 self.dataOut.timeZone = self.dataIn.timeZone
1397 self.dataOut.dstFlag = self.dataIn.dstFlag
1594 self.dataOut.dstFlag = self.dataIn.dstFlag
1398 self.dataOut.errorCount = self.dataIn.errorCount
1595 self.dataOut.errorCount = self.dataIn.errorCount
1399 self.dataOut.useLocalTime = self.dataIn.useLocalTime
1596 self.dataOut.useLocalTime = self.dataIn.useLocalTime
1400
1597
1401 self.dataOut.radarControllerHeaderObj = self.dataIn.radarControllerHeaderObj.copy()#
1598 self.dataOut.radarControllerHeaderObj = self.dataIn.radarControllerHeaderObj.copy()#
1402 self.dataOut.systemHeaderObj = self.dataIn.systemHeaderObj.copy()#
1599 self.dataOut.systemHeaderObj = self.dataIn.systemHeaderObj.copy()#
1403 self.dataOut.channelList = self.dataIn.channelList
1600 self.dataOut.channelList = self.dataIn.channelList
1404 self.dataOut.heightList = self.dataIn.heightList
1601 self.dataOut.heightList = self.dataIn.heightList
1405 # self.dataOut.dtype = self.dataIn.dtype
1602 # self.dataOut.dtype = self.dataIn.dtype
1406 self.dataOut.dtype = numpy.dtype([('real','<f4'),('imag','<f4')])
1603 self.dataOut.dtype = numpy.dtype([('real','<f4'),('imag','<f4')])
1407 # self.dataOut.nHeights = self.dataIn.nHeights
1604 # self.dataOut.nHeights = self.dataIn.nHeights
1408 # self.dataOut.nChannels = self.dataIn.nChannels
1605 # self.dataOut.nChannels = self.dataIn.nChannels
1409 self.dataOut.nBaud = self.dataIn.nBaud
1606 self.dataOut.nBaud = self.dataIn.nBaud
1410 self.dataOut.nCode = self.dataIn.nCode
1607 self.dataOut.nCode = self.dataIn.nCode
1411 self.dataOut.code = self.dataIn.code
1608 self.dataOut.code = self.dataIn.code
1412 # self.dataOut.nProfiles = 1
1609 # self.dataOut.nProfiles = 1
1413 # self.dataOut.nProfiles = self.dataOut.nFFTPoints
1610 # self.dataOut.nProfiles = self.dataOut.nFFTPoints
1414 self.dataOut.nFFTPoints = self.dataIn.nHeights
1611 self.dataOut.nFFTPoints = self.dataIn.nHeights
1415 # self.dataOut.channelIndexList = self.dataIn.channelIndexList
1612 # self.dataOut.channelIndexList = self.dataIn.channelIndexList
1416 # self.dataOut.flagNoData = self.dataIn.flagNoData
1613 # self.dataOut.flagNoData = self.dataIn.flagNoData
1417 self.dataOut.flagTimeBlock = self.dataIn.flagTimeBlock
1614 self.dataOut.flagTimeBlock = self.dataIn.flagTimeBlock
1418 self.dataOut.utctime = self.dataIn.utctime
1615 self.dataOut.utctime = self.dataIn.utctime
1419 # self.dataOut.utctime = self.firstdatatime
1616 # self.dataOut.utctime = self.firstdatatime
1420 self.dataOut.flagDecodeData = self.dataIn.flagDecodeData #asumo q la data esta decodificada
1617 self.dataOut.flagDecodeData = self.dataIn.flagDecodeData #asumo q la data esta decodificada
1421 self.dataOut.flagDeflipData = self.dataIn.flagDeflipData #asumo q la data esta sin flip
1618 self.dataOut.flagDeflipData = self.dataIn.flagDeflipData #asumo q la data esta sin flip
1422 # self.dataOut.flagShiftFFT = self.dataIn.flagShiftFFT
1619 # self.dataOut.flagShiftFFT = self.dataIn.flagShiftFFT
1423 self.dataOut.nCohInt = self.dataIn.nCohInt
1620 self.dataOut.nCohInt = self.dataIn.nCohInt
1424 self.dataOut.nIncohInt = 1
1621 self.dataOut.nIncohInt = 1
1425 self.dataOut.ippSeconds= self.dataIn.ippSeconds
1622 self.dataOut.ippSeconds= self.dataIn.ippSeconds
1426 self.dataOut.windowOfFilter = self.dataIn.windowOfFilter
1623 self.dataOut.windowOfFilter = self.dataIn.windowOfFilter
1427
1624
1428 self.dataOut.timeInterval = self.dataIn.timeInterval*self.dataOut.nIncohInt
1625 self.dataOut.timeInterval = self.dataIn.timeInterval*self.dataOut.nIncohInt
1429 # self.dataOut.set=self.dataIn.set
1626 # self.dataOut.set=self.dataIn.set
1430 # self.dataOut.deltaHeight=self.dataIn.deltaHeight
1627 # self.dataOut.deltaHeight=self.dataIn.deltaHeight
1431
1628
1432
1629
1433 def __updateObjFromFits(self):
1630 def __updateObjFromFits(self):
1434 self.dataOut.utctime = self.dataIn.utctime
1631 self.dataOut.utctime = self.dataIn.utctime
1435 self.dataOut.channelIndexList = self.dataIn.channelIndexList
1632 self.dataOut.channelIndexList = self.dataIn.channelIndexList
1436
1633
1437 self.dataOut.channelList = self.dataIn.channelList
1634 self.dataOut.channelList = self.dataIn.channelList
1438 self.dataOut.heightList = self.dataIn.heightList
1635 self.dataOut.heightList = self.dataIn.heightList
1439 self.dataOut.data_spc = self.dataIn.data
1636 self.dataOut.data_spc = self.dataIn.data
1440 self.dataOut.timeInterval = self.dataIn.timeInterval
1637 self.dataOut.timeInterval = self.dataIn.timeInterval
1441 self.dataOut.timeZone = self.dataIn.timeZone
1638 self.dataOut.timeZone = self.dataIn.timeZone
1442 self.dataOut.useLocalTime = True
1639 self.dataOut.useLocalTime = True
1443 # self.dataOut.
1640 # self.dataOut.
1444 # self.dataOut.
1641 # self.dataOut.
1445
1642
1446 def __getFft(self):
1643 def __getFft(self):
1447
1644
1448 fft_volt = numpy.fft.fft(self.dataIn.data, axis=1)
1645 fft_volt = numpy.fft.fft(self.dataIn.data, axis=1)
1449 fft_volt = numpy.fft.fftshift(fft_volt,axes=(1,))
1646 fft_volt = numpy.fft.fftshift(fft_volt,axes=(1,))
1450 spc = numpy.abs(fft_volt * numpy.conjugate(fft_volt))/(self.dataOut.nFFTPoints)
1647 spc = numpy.abs(fft_volt * numpy.conjugate(fft_volt))/(self.dataOut.nFFTPoints)
1451 self.dataOut.data_spc = spc
1648 self.dataOut.data_spc = spc
1452
1649
1453 def init(self):
1650 def init(self):
1454
1651
1455 self.dataOut.flagNoData = True
1652 self.dataOut.flagNoData = True
1456
1653
1457 if self.dataIn.type == "Fits":
1654 if self.dataIn.type == "Fits":
1458 self.__updateObjFromFits()
1655 self.__updateObjFromFits()
1459 self.dataOut.flagNoData = False
1656 self.dataOut.flagNoData = False
1460 return
1657 return
1461
1658
1462 if self.dataIn.type == "SpectraHeis":
1659 if self.dataIn.type == "SpectraHeis":
1463 self.dataOut.copy(self.dataIn)
1660 self.dataOut.copy(self.dataIn)
1464 return
1661 return
1465
1662
1466 if self.dataIn.type == "Voltage":
1663 if self.dataIn.type == "Voltage":
1467 self.__updateObjFromInput()
1664 self.__updateObjFromInput()
1468 self.__getFft()
1665 self.__getFft()
1469 self.dataOut.flagNoData = False
1666 self.dataOut.flagNoData = False
1470
1667
1471 return
1668 return
1472
1669
1473 raise ValuError, "The type object %s is not valid"%(self.dataIn.type)
1670 raise ValueError, "The type object %s is not valid"%(self.dataIn.type)
1474
1671
1475
1672
1476 def selectChannels(self, channelList):
1673 def selectChannels(self, channelList):
1477
1674
1478 channelIndexList = []
1675 channelIndexList = []
1479
1676
1480 for channel in channelList:
1677 for channel in channelList:
1481 index = self.dataOut.channelList.index(channel)
1678 index = self.dataOut.channelList.index(channel)
1482 channelIndexList.append(index)
1679 channelIndexList.append(index)
1483
1680
1484 self.selectChannelsByIndex(channelIndexList)
1681 self.selectChannelsByIndex(channelIndexList)
1485
1682
1486 def selectChannelsByIndex(self, channelIndexList):
1683 def selectChannelsByIndex(self, channelIndexList):
1487 """
1684 """
1488 Selecciona un bloque de datos en base a canales segun el channelIndexList
1685 Selecciona un bloque de datos en base a canales segun el channelIndexList
1489
1686
1490 Input:
1687 Input:
1491 channelIndexList : lista sencilla de canales a seleccionar por ej. [2,3,7]
1688 channelIndexList : lista sencilla de canales a seleccionar por ej. [2,3,7]
1492
1689
1493 Affected:
1690 Affected:
1494 self.dataOut.data
1691 self.dataOut.data
1495 self.dataOut.channelIndexList
1692 self.dataOut.channelIndexList
1496 self.dataOut.nChannels
1693 self.dataOut.nChannels
1497 self.dataOut.m_ProcessingHeader.totalSpectra
1694 self.dataOut.m_ProcessingHeader.totalSpectra
1498 self.dataOut.systemHeaderObj.numChannels
1695 self.dataOut.systemHeaderObj.numChannels
1499 self.dataOut.m_ProcessingHeader.blockSize
1696 self.dataOut.m_ProcessingHeader.blockSize
1500
1697
1501 Return:
1698 Return:
1502 None
1699 None
1503 """
1700 """
1504
1701
1505 for channelIndex in channelIndexList:
1702 for channelIndex in channelIndexList:
1506 if channelIndex not in self.dataOut.channelIndexList:
1703 if channelIndex not in self.dataOut.channelIndexList:
1507 print channelIndexList
1704 print channelIndexList
1508 raise ValueError, "The value %d in channelIndexList is not valid" %channelIndex
1705 raise ValueError, "The value %d in channelIndexList is not valid" %channelIndex
1509
1706
1510 nChannels = len(channelIndexList)
1707 nChannels = len(channelIndexList)
1511
1708
1512 data_spc = self.dataOut.data_spc[channelIndexList,:]
1709 data_spc = self.dataOut.data_spc[channelIndexList,:]
1513
1710
1514 self.dataOut.data_spc = data_spc
1711 self.dataOut.data_spc = data_spc
1515 self.dataOut.channelList = [self.dataOut.channelList[i] for i in channelIndexList]
1712 self.dataOut.channelList = [self.dataOut.channelList[i] for i in channelIndexList]
1516
1713
1517 return 1
1714 return 1
1518
1715
1519 class IncohInt4SpectraHeis(Operation):
1716 class IncohInt4SpectraHeis(Operation):
1520
1717
1521 __isConfig = False
1718 __isConfig = False
1522
1719
1523 __profIndex = 0
1720 __profIndex = 0
1524 __withOverapping = False
1721 __withOverapping = False
1525
1722
1526 __byTime = False
1723 __byTime = False
1527 __initime = None
1724 __initime = None
1528 __lastdatatime = None
1725 __lastdatatime = None
1529 __integrationtime = None
1726 __integrationtime = None
1530
1727
1531 __buffer = None
1728 __buffer = None
1532
1729
1533 __dataReady = False
1730 __dataReady = False
1534
1731
1535 n = None
1732 n = None
1536
1733
1537
1734
1538 def __init__(self):
1735 def __init__(self):
1539
1736
1540 self.__isConfig = False
1737 self.__isConfig = False
1541
1738
1542 def setup(self, n=None, timeInterval=None, overlapping=False):
1739 def setup(self, n=None, timeInterval=None, overlapping=False):
1543 """
1740 """
1544 Set the parameters of the integration class.
1741 Set the parameters of the integration class.
1545
1742
1546 Inputs:
1743 Inputs:
1547
1744
1548 n : Number of coherent integrations
1745 n : Number of coherent integrations
1549 timeInterval : Time of integration. If the parameter "n" is selected this one does not work
1746 timeInterval : Time of integration. If the parameter "n" is selected this one does not work
1550 overlapping :
1747 overlapping :
1551
1748
1552 """
1749 """
1553
1750
1554 self.__initime = None
1751 self.__initime = None
1555 self.__lastdatatime = 0
1752 self.__lastdatatime = 0
1556 self.__buffer = None
1753 self.__buffer = None
1557 self.__dataReady = False
1754 self.__dataReady = False
1558
1755
1559
1756
1560 if n == None and timeInterval == None:
1757 if n == None and timeInterval == None:
1561 raise ValueError, "n or timeInterval should be specified ..."
1758 raise ValueError, "n or timeInterval should be specified ..."
1562
1759
1563 if n != None:
1760 if n != None:
1564 self.n = n
1761 self.n = n
1565 self.__byTime = False
1762 self.__byTime = False
1566 else:
1763 else:
1567 self.__integrationtime = timeInterval #* 60. #if (type(timeInterval)!=integer) -> change this line
1764 self.__integrationtime = timeInterval #* 60. #if (type(timeInterval)!=integer) -> change this line
1568 self.n = 9999
1765 self.n = 9999
1569 self.__byTime = True
1766 self.__byTime = True
1570
1767
1571 if overlapping:
1768 if overlapping:
1572 self.__withOverapping = True
1769 self.__withOverapping = True
1573 self.__buffer = None
1770 self.__buffer = None
1574 else:
1771 else:
1575 self.__withOverapping = False
1772 self.__withOverapping = False
1576 self.__buffer = 0
1773 self.__buffer = 0
1577
1774
1578 self.__profIndex = 0
1775 self.__profIndex = 0
1579
1776
1580 def putData(self, data):
1777 def putData(self, data):
1581
1778
1582 """
1779 """
1583 Add a profile to the __buffer and increase in one the __profileIndex
1780 Add a profile to the __buffer and increase in one the __profileIndex
1584
1781
1585 """
1782 """
1586
1783
1587 if not self.__withOverapping:
1784 if not self.__withOverapping:
1588 self.__buffer += data.copy()
1785 self.__buffer += data.copy()
1589 self.__profIndex += 1
1786 self.__profIndex += 1
1590 return
1787 return
1591
1788
1592 #Overlapping data
1789 #Overlapping data
1593 nChannels, nHeis = data.shape
1790 nChannels, nHeis = data.shape
1594 data = numpy.reshape(data, (1, nChannels, nHeis))
1791 data = numpy.reshape(data, (1, nChannels, nHeis))
1595
1792
1596 #If the buffer is empty then it takes the data value
1793 #If the buffer is empty then it takes the data value
1597 if self.__buffer == None:
1794 if self.__buffer == None:
1598 self.__buffer = data
1795 self.__buffer = data
1599 self.__profIndex += 1
1796 self.__profIndex += 1
1600 return
1797 return
1601
1798
1602 #If the buffer length is lower than n then stakcing the data value
1799 #If the buffer length is lower than n then stakcing the data value
1603 if self.__profIndex < self.n:
1800 if self.__profIndex < self.n:
1604 self.__buffer = numpy.vstack((self.__buffer, data))
1801 self.__buffer = numpy.vstack((self.__buffer, data))
1605 self.__profIndex += 1
1802 self.__profIndex += 1
1606 return
1803 return
1607
1804
1608 #If the buffer length is equal to n then replacing the last buffer value with the data value
1805 #If the buffer length is equal to n then replacing the last buffer value with the data value
1609 self.__buffer = numpy.roll(self.__buffer, -1, axis=0)
1806 self.__buffer = numpy.roll(self.__buffer, -1, axis=0)
1610 self.__buffer[self.n-1] = data
1807 self.__buffer[self.n-1] = data
1611 self.__profIndex = self.n
1808 self.__profIndex = self.n
1612 return
1809 return
1613
1810
1614
1811
1615 def pushData(self):
1812 def pushData(self):
1616 """
1813 """
1617 Return the sum of the last profiles and the profiles used in the sum.
1814 Return the sum of the last profiles and the profiles used in the sum.
1618
1815
1619 Affected:
1816 Affected:
1620
1817
1621 self.__profileIndex
1818 self.__profileIndex
1622
1819
1623 """
1820 """
1624
1821
1625 if not self.__withOverapping:
1822 if not self.__withOverapping:
1626 data = self.__buffer
1823 data = self.__buffer
1627 n = self.__profIndex
1824 n = self.__profIndex
1628
1825
1629 self.__buffer = 0
1826 self.__buffer = 0
1630 self.__profIndex = 0
1827 self.__profIndex = 0
1631
1828
1632 return data, n
1829 return data, n
1633
1830
1634 #Integration with Overlapping
1831 #Integration with Overlapping
1635 data = numpy.sum(self.__buffer, axis=0)
1832 data = numpy.sum(self.__buffer, axis=0)
1636 n = self.__profIndex
1833 n = self.__profIndex
1637
1834
1638 return data, n
1835 return data, n
1639
1836
1640 def byProfiles(self, data):
1837 def byProfiles(self, data):
1641
1838
1642 self.__dataReady = False
1839 self.__dataReady = False
1643 avgdata = None
1840 avgdata = None
1644 n = None
1841 n = None
1645
1842
1646 self.putData(data)
1843 self.putData(data)
1647
1844
1648 if self.__profIndex == self.n:
1845 if self.__profIndex == self.n:
1649
1846
1650 avgdata, n = self.pushData()
1847 avgdata, n = self.pushData()
1651 self.__dataReady = True
1848 self.__dataReady = True
1652
1849
1653 return avgdata
1850 return avgdata
1654
1851
1655 def byTime(self, data, datatime):
1852 def byTime(self, data, datatime):
1656
1853
1657 self.__dataReady = False
1854 self.__dataReady = False
1658 avgdata = None
1855 avgdata = None
1659 n = None
1856 n = None
1660
1857
1661 self.putData(data)
1858 self.putData(data)
1662
1859
1663 if (datatime - self.__initime) >= self.__integrationtime:
1860 if (datatime - self.__initime) >= self.__integrationtime:
1664 avgdata, n = self.pushData()
1861 avgdata, n = self.pushData()
1665 self.n = n
1862 self.n = n
1666 self.__dataReady = True
1863 self.__dataReady = True
1667
1864
1668 return avgdata
1865 return avgdata
1669
1866
1670 def integrate(self, data, datatime=None):
1867 def integrate(self, data, datatime=None):
1671
1868
1672 if self.__initime == None:
1869 if self.__initime == None:
1673 self.__initime = datatime
1870 self.__initime = datatime
1674
1871
1675 if self.__byTime:
1872 if self.__byTime:
1676 avgdata = self.byTime(data, datatime)
1873 avgdata = self.byTime(data, datatime)
1677 else:
1874 else:
1678 avgdata = self.byProfiles(data)
1875 avgdata = self.byProfiles(data)
1679
1876
1680
1877
1681 self.__lastdatatime = datatime
1878 self.__lastdatatime = datatime
1682
1879
1683 if avgdata == None:
1880 if avgdata == None:
1684 return None, None
1881 return None, None
1685
1882
1686 avgdatatime = self.__initime
1883 avgdatatime = self.__initime
1687
1884
1688 deltatime = datatime -self.__lastdatatime
1885 deltatime = datatime -self.__lastdatatime
1689
1886
1690 if not self.__withOverapping:
1887 if not self.__withOverapping:
1691 self.__initime = datatime
1888 self.__initime = datatime
1692 else:
1889 else:
1693 self.__initime += deltatime
1890 self.__initime += deltatime
1694
1891
1695 return avgdata, avgdatatime
1892 return avgdata, avgdatatime
1696
1893
1697 def run(self, dataOut, **kwargs):
1894 def run(self, dataOut, **kwargs):
1698
1895
1699 if not self.__isConfig:
1896 if not self.__isConfig:
1700 self.setup(**kwargs)
1897 self.setup(**kwargs)
1701 self.__isConfig = True
1898 self.__isConfig = True
1702
1899
1703 avgdata, avgdatatime = self.integrate(dataOut.data_spc, dataOut.utctime)
1900 avgdata, avgdatatime = self.integrate(dataOut.data_spc, dataOut.utctime)
1704
1901
1705 # dataOut.timeInterval *= n
1902 # dataOut.timeInterval *= n
1706 dataOut.flagNoData = True
1903 dataOut.flagNoData = True
1707
1904
1708 if self.__dataReady:
1905 if self.__dataReady:
1709 dataOut.data_spc = avgdata
1906 dataOut.data_spc = avgdata
1710 dataOut.nIncohInt *= self.n
1907 dataOut.nIncohInt *= self.n
1711 # dataOut.nCohInt *= self.n
1908 # dataOut.nCohInt *= self.n
1712 dataOut.utctime = avgdatatime
1909 dataOut.utctime = avgdatatime
1713 dataOut.timeInterval = dataOut.ippSeconds * dataOut.nIncohInt
1910 dataOut.timeInterval = dataOut.ippSeconds * dataOut.nIncohInt
1714 # dataOut.timeInterval = self.__timeInterval*self.n
1911 # dataOut.timeInterval = self.__timeInterval*self.n
1715 dataOut.flagNoData = False
1912 dataOut.flagNoData = False
1716
1913
1717
1914
1718
1915
1719
1916
1720 No newline at end of file
1917
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