##// END OF EJS Templates
Bug Fixed: looking folders inside of path...
Daniel Valdez -
r479:c8a51503fa1e
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@@ -1,702 +1,704
1 '''
1 '''
2
2
3 $Author: murco $
3 $Author: murco $
4 $Id: JROData.py 173 2012-11-20 15:06:21Z murco $
4 $Id: JROData.py 173 2012-11-20 15:06:21Z murco $
5 '''
5 '''
6
6
7 import os, sys
7 import os, sys
8 import copy
8 import copy
9 import numpy
9 import numpy
10 import datetime
10 import datetime
11 import time
11 import time
12 from jroheaderIO import SystemHeader, RadarControllerHeader
12 from jroheaderIO import SystemHeader, RadarControllerHeader
13
13
14
14
15 def hildebrand_sekhon(data, navg):
15 def hildebrand_sekhon(data, navg):
16
16
17 data = data.copy()
17 data = data.copy()
18
18
19 sortdata = numpy.sort(data,axis=None)
19 sortdata = numpy.sort(data,axis=None)
20 lenOfData = len(sortdata)
20 lenOfData = len(sortdata)
21 nums_min = lenOfData/10
21 nums_min = lenOfData/10
22
22
23 if (lenOfData/10) > 2:
23 if (lenOfData/10) > 2:
24 nums_min = lenOfData/10
24 nums_min = lenOfData/10
25 else:
25 else:
26 nums_min = 2
26 nums_min = 2
27
27
28 sump = 0.
28 sump = 0.
29
29
30 sumq = 0.
30 sumq = 0.
31
31
32 j = 0
32 j = 0
33
33
34 cont = 1
34 cont = 1
35
35
36 while((cont==1)and(j<lenOfData)):
36 while((cont==1)and(j<lenOfData)):
37
37
38 sump += sortdata[j]
38 sump += sortdata[j]
39
39
40 sumq += sortdata[j]**2
40 sumq += sortdata[j]**2
41
41
42 j += 1
42 j += 1
43
43
44 if j > nums_min:
44 if j > nums_min:
45 rtest = float(j)/(j-1) + 1.0/navg
45 rtest = float(j)/(j-1) + 1.0/navg
46 if ((sumq*j) > (rtest*sump**2)):
46 if ((sumq*j) > (rtest*sump**2)):
47 j = j - 1
47 j = j - 1
48 sump = sump - sortdata[j]
48 sump = sump - sortdata[j]
49 sumq = sumq - sortdata[j]**2
49 sumq = sumq - sortdata[j]**2
50 cont = 0
50 cont = 0
51
51
52 lnoise = sump /j
52 lnoise = sump /j
53 stdv = numpy.sqrt((sumq - lnoise**2)/(j - 1))
53 stdv = numpy.sqrt((sumq - lnoise**2)/(j - 1))
54 return lnoise
54 return lnoise
55
55
56 class JROData:
56 class JROData:
57
57
58 # m_BasicHeader = BasicHeader()
58 # m_BasicHeader = BasicHeader()
59 # m_ProcessingHeader = ProcessingHeader()
59 # m_ProcessingHeader = ProcessingHeader()
60
60
61 systemHeaderObj = SystemHeader()
61 systemHeaderObj = SystemHeader()
62
62
63 radarControllerHeaderObj = RadarControllerHeader()
63 radarControllerHeaderObj = RadarControllerHeader()
64
64
65 # data = None
65 # data = None
66
66
67 type = None
67 type = None
68
68
69 dtype = None
69 dtype = None
70
70
71 # nChannels = None
71 # nChannels = None
72
72
73 # nHeights = None
73 # nHeights = None
74
74
75 nProfiles = None
75 nProfiles = None
76
76
77 heightList = None
77 heightList = None
78
78
79 channelList = None
79 channelList = None
80
80
81 flagNoData = True
81 flagNoData = True
82
82
83 flagTimeBlock = False
83 flagTimeBlock = False
84
84
85 useLocalTime = False
85 useLocalTime = False
86
86
87 utctime = None
87 utctime = None
88
88
89 timeZone = None
89 timeZone = None
90
90
91 dstFlag = None
91 dstFlag = None
92
92
93 errorCount = None
93 errorCount = None
94
94
95 blocksize = None
95 blocksize = None
96
96
97 nCode = None
97 nCode = None
98
98
99 nBaud = None
99 nBaud = None
100
100
101 code = None
101 code = None
102
102
103 flagDecodeData = False #asumo q la data no esta decodificada
103 flagDecodeData = False #asumo q la data no esta decodificada
104
104
105 flagDeflipData = False #asumo q la data no esta sin flip
105 flagDeflipData = False #asumo q la data no esta sin flip
106
106
107 flagShiftFFT = False
107 flagShiftFFT = False
108
108
109 ippSeconds = None
109 ippSeconds = None
110
110
111 timeInterval = None
111 timeInterval = None
112
112
113 nCohInt = None
113 nCohInt = None
114
114
115 noise = None
115 noise = None
116
116
117 windowOfFilter = 1
117 windowOfFilter = 1
118
118
119 #Speed of ligth
119 #Speed of ligth
120 C = 3e8
120 C = 3e8
121
121
122 frequency = 49.92e6
122 frequency = 49.92e6
123
123
124 realtime = False
124 realtime = False
125
125
126 beacon_heiIndexList = None
126 beacon_heiIndexList = None
127
127
128 last_block = None
128 last_block = None
129
129
130 blocknow = None
130 blocknow = None
131
131
132 def __init__(self):
132 def __init__(self):
133
133
134 raise ValueError, "This class has not been implemented"
134 raise ValueError, "This class has not been implemented"
135
135
136 def copy(self, inputObj=None):
136 def copy(self, inputObj=None):
137
137
138 if inputObj == None:
138 if inputObj == None:
139 return copy.deepcopy(self)
139 return copy.deepcopy(self)
140
140
141 for key in inputObj.__dict__.keys():
141 for key in inputObj.__dict__.keys():
142 self.__dict__[key] = inputObj.__dict__[key]
142 self.__dict__[key] = inputObj.__dict__[key]
143
143
144 def deepcopy(self):
144 def deepcopy(self):
145
145
146 return copy.deepcopy(self)
146 return copy.deepcopy(self)
147
147
148 def isEmpty(self):
148 def isEmpty(self):
149
149
150 return self.flagNoData
150 return self.flagNoData
151
151
152 def getNoise(self):
152 def getNoise(self):
153
153
154 raise ValueError, "Not implemented"
154 raise ValueError, "Not implemented"
155
155
156 def getNChannels(self):
156 def getNChannels(self):
157
157
158 return len(self.channelList)
158 return len(self.channelList)
159
159
160 def getChannelIndexList(self):
160 def getChannelIndexList(self):
161
161
162 return range(self.nChannels)
162 return range(self.nChannels)
163
163
164 def getNHeights(self):
164 def getNHeights(self):
165
165
166 return len(self.heightList)
166 return len(self.heightList)
167
167
168 def getHeiRange(self, extrapoints=0):
168 def getHeiRange(self, extrapoints=0):
169
169
170 heis = self.heightList
170 heis = self.heightList
171 # deltah = self.heightList[1] - self.heightList[0]
171 # deltah = self.heightList[1] - self.heightList[0]
172 #
172 #
173 # heis.append(self.heightList[-1])
173 # heis.append(self.heightList[-1])
174
174
175 return heis
175 return heis
176
176
177 def getltctime(self):
177 def getltctime(self):
178
178
179 if self.useLocalTime:
179 if self.useLocalTime:
180 return self.utctime - self.timeZone*60
180 return self.utctime - self.timeZone*60
181
181
182 return self.utctime
182 return self.utctime
183
183
184 def getDatatime(self):
184 def getDatatime(self):
185
185
186 datatime = datetime.datetime.utcfromtimestamp(self.ltctime)
186 datatime = datetime.datetime.utcfromtimestamp(self.ltctime)
187 return datatime
187 return datatime
188
188
189 def getTimeRange(self):
189 def getTimeRange(self):
190
190
191 datatime = []
191 datatime = []
192
192
193 datatime.append(self.ltctime)
193 datatime.append(self.ltctime)
194 datatime.append(self.ltctime + self.timeInterval)
194 datatime.append(self.ltctime + self.timeInterval)
195
195
196 datatime = numpy.array(datatime)
196 datatime = numpy.array(datatime)
197
197
198 return datatime
198 return datatime
199
199
200 def getFmax(self):
200 def getFmax(self):
201
201
202 PRF = 1./(self.ippSeconds * self.nCohInt)
202 PRF = 1./(self.ippSeconds * self.nCohInt)
203
203
204 fmax = PRF/2.
204 fmax = PRF/2.
205
205
206 return fmax
206 return fmax
207
207
208 def getVmax(self):
208 def getVmax(self):
209
209
210 _lambda = self.C/self.frequency
210 _lambda = self.C/self.frequency
211
211
212 vmax = self.getFmax() * _lambda
212 vmax = self.getFmax() * _lambda
213
213
214 return vmax
214 return vmax
215
215
216 nChannels = property(getNChannels, "I'm the 'nChannel' property.")
216 nChannels = property(getNChannels, "I'm the 'nChannel' property.")
217 channelIndexList = property(getChannelIndexList, "I'm the 'channelIndexList' property.")
217 channelIndexList = property(getChannelIndexList, "I'm the 'channelIndexList' property.")
218 nHeights = property(getNHeights, "I'm the 'nHeights' property.")
218 nHeights = property(getNHeights, "I'm the 'nHeights' property.")
219 noise = property(getNoise, "I'm the 'nHeights' property.")
219 noise = property(getNoise, "I'm the 'nHeights' property.")
220 datatime = property(getDatatime, "I'm the 'datatime' property")
220 datatime = property(getDatatime, "I'm the 'datatime' property")
221 ltctime = property(getltctime, "I'm the 'ltctime' property")
221 ltctime = property(getltctime, "I'm the 'ltctime' property")
222
222
223 class Voltage(JROData):
223 class Voltage(JROData):
224
224
225 #data es un numpy array de 2 dmensiones (canales, alturas)
225 #data es un numpy array de 2 dmensiones (canales, alturas)
226 data = None
226 data = None
227
227
228 def __init__(self):
228 def __init__(self):
229 '''
229 '''
230 Constructor
230 Constructor
231 '''
231 '''
232
232
233 self.radarControllerHeaderObj = RadarControllerHeader()
233 self.radarControllerHeaderObj = RadarControllerHeader()
234
234
235 self.systemHeaderObj = SystemHeader()
235 self.systemHeaderObj = SystemHeader()
236
236
237 self.type = "Voltage"
237 self.type = "Voltage"
238
238
239 self.data = None
239 self.data = None
240
240
241 self.dtype = None
241 self.dtype = None
242
242
243 # self.nChannels = 0
243 # self.nChannels = 0
244
244
245 # self.nHeights = 0
245 # self.nHeights = 0
246
246
247 self.nProfiles = None
247 self.nProfiles = None
248
248
249 self.heightList = None
249 self.heightList = None
250
250
251 self.channelList = None
251 self.channelList = None
252
252
253 # self.channelIndexList = None
253 # self.channelIndexList = None
254
254
255 self.flagNoData = True
255 self.flagNoData = True
256
256
257 self.flagTimeBlock = False
257 self.flagTimeBlock = False
258
258
259 self.utctime = None
259 self.utctime = None
260
260
261 self.timeZone = None
261 self.timeZone = None
262
262
263 self.dstFlag = None
263 self.dstFlag = None
264
264
265 self.errorCount = None
265 self.errorCount = None
266
266
267 self.nCohInt = None
267 self.nCohInt = None
268
268
269 self.blocksize = None
269 self.blocksize = None
270
270
271 self.flagDecodeData = False #asumo q la data no esta decodificada
271 self.flagDecodeData = False #asumo q la data no esta decodificada
272
272
273 self.flagDeflipData = False #asumo q la data no esta sin flip
273 self.flagDeflipData = False #asumo q la data no esta sin flip
274
274
275 self.flagShiftFFT = False
275 self.flagShiftFFT = False
276
276
277
277
278 def getNoisebyHildebrand(self):
278 def getNoisebyHildebrand(self):
279 """
279 """
280 Determino el nivel de ruido usando el metodo Hildebrand-Sekhon
280 Determino el nivel de ruido usando el metodo Hildebrand-Sekhon
281
281
282 Return:
282 Return:
283 noiselevel
283 noiselevel
284 """
284 """
285
285
286 for channel in range(self.nChannels):
286 for channel in range(self.nChannels):
287 daux = self.data_spc[channel,:,:]
287 daux = self.data_spc[channel,:,:]
288 self.noise[channel] = hildebrand_sekhon(daux, self.nCohInt)
288 self.noise[channel] = hildebrand_sekhon(daux, self.nCohInt)
289
289
290 return self.noise
290 return self.noise
291
291
292 def getNoise(self, type = 1):
292 def getNoise(self, type = 1):
293
293
294 self.noise = numpy.zeros(self.nChannels)
294 self.noise = numpy.zeros(self.nChannels)
295
295
296 if type == 1:
296 if type == 1:
297 noise = self.getNoisebyHildebrand()
297 noise = self.getNoisebyHildebrand()
298
298
299 return 10*numpy.log10(noise)
299 return 10*numpy.log10(noise)
300
300
301 class Spectra(JROData):
301 class Spectra(JROData):
302
302
303 #data es un numpy array de 2 dmensiones (canales, perfiles, alturas)
303 #data es un numpy array de 2 dmensiones (canales, perfiles, alturas)
304 data_spc = None
304 data_spc = None
305
305
306 #data es un numpy array de 2 dmensiones (canales, pares, alturas)
306 #data es un numpy array de 2 dmensiones (canales, pares, alturas)
307 data_cspc = None
307 data_cspc = None
308
308
309 #data es un numpy array de 2 dmensiones (canales, alturas)
309 #data es un numpy array de 2 dmensiones (canales, alturas)
310 data_dc = None
310 data_dc = None
311
311
312 nFFTPoints = None
312 nFFTPoints = None
313
313
314 nPairs = None
314 nPairs = None
315
315
316 pairsList = None
316 pairsList = None
317
317
318 nIncohInt = None
318 nIncohInt = None
319
319
320 wavelength = None #Necesario para cacular el rango de velocidad desde la frecuencia
320 wavelength = None #Necesario para cacular el rango de velocidad desde la frecuencia
321
321
322 nCohInt = None #se requiere para determinar el valor de timeInterval
322 nCohInt = None #se requiere para determinar el valor de timeInterval
323
323
324 ippFactor = None
324 ippFactor = None
325
325
326 def __init__(self):
326 def __init__(self):
327 '''
327 '''
328 Constructor
328 Constructor
329 '''
329 '''
330
330
331 self.radarControllerHeaderObj = RadarControllerHeader()
331 self.radarControllerHeaderObj = RadarControllerHeader()
332
332
333 self.systemHeaderObj = SystemHeader()
333 self.systemHeaderObj = SystemHeader()
334
334
335 self.type = "Spectra"
335 self.type = "Spectra"
336
336
337 # self.data = None
337 # self.data = None
338
338
339 self.dtype = None
339 self.dtype = None
340
340
341 # self.nChannels = 0
341 # self.nChannels = 0
342
342
343 # self.nHeights = 0
343 # self.nHeights = 0
344
344
345 self.nProfiles = None
345 self.nProfiles = None
346
346
347 self.heightList = None
347 self.heightList = None
348
348
349 self.channelList = None
349 self.channelList = None
350
350
351 # self.channelIndexList = None
351 # self.channelIndexList = None
352
352
353 self.flagNoData = True
353 self.flagNoData = True
354
354
355 self.flagTimeBlock = False
355 self.flagTimeBlock = False
356
356
357 self.utctime = None
357 self.utctime = None
358
358
359 self.nCohInt = None
359 self.nCohInt = None
360
360
361 self.nIncohInt = None
361 self.nIncohInt = None
362
362
363 self.blocksize = None
363 self.blocksize = None
364
364
365 self.nFFTPoints = None
365 self.nFFTPoints = None
366
366
367 self.wavelength = None
367 self.wavelength = None
368
368
369 self.flagDecodeData = False #asumo q la data no esta decodificada
369 self.flagDecodeData = False #asumo q la data no esta decodificada
370
370
371 self.flagDeflipData = False #asumo q la data no esta sin flip
371 self.flagDeflipData = False #asumo q la data no esta sin flip
372
372
373 self.flagShiftFFT = False
373 self.flagShiftFFT = False
374
374
375 self.ippFactor = 1
375 self.ippFactor = 1
376
376
377 self.noise = None
377 self.noise = None
378
378
379 self.beacon_heiIndexList = []
379 self.beacon_heiIndexList = []
380
380
381
381
382 def getNoisebyHildebrand(self):
382 def getNoisebyHildebrand(self):
383 """
383 """
384 Determino el nivel de ruido usando el metodo Hildebrand-Sekhon
384 Determino el nivel de ruido usando el metodo Hildebrand-Sekhon
385
385
386 Return:
386 Return:
387 noiselevel
387 noiselevel
388 """
388 """
389 noise = numpy.zeros(self.nChannels)
389 noise = numpy.zeros(self.nChannels)
390 for channel in range(self.nChannels):
390 for channel in range(self.nChannels):
391 daux = self.data_spc[channel,:,:]
391 daux = self.data_spc[channel,:,:]
392 noise[channel] = hildebrand_sekhon(daux, self.nIncohInt)
392 noise[channel] = hildebrand_sekhon(daux, self.nIncohInt)
393
393
394 return noise
394 return noise
395
395
396 def getNoise(self):
396 def getNoise(self):
397 if self.noise != None:
397 if self.noise != None:
398 return self.noise
398 return self.noise
399 else:
399 else:
400 noise = self.getNoisebyHildebrand()
400 noise = self.getNoisebyHildebrand()
401 return noise
401 return noise
402
402
403
403
404 def getFreqRange(self, extrapoints=0):
404 def getFreqRange(self, extrapoints=0):
405
405
406 deltafreq = self.getFmax() / (self.nFFTPoints*self.ippFactor)
406 deltafreq = self.getFmax() / (self.nFFTPoints*self.ippFactor)
407 freqrange = deltafreq*(numpy.arange(self.nFFTPoints+extrapoints)-self.nFFTPoints/2.) - deltafreq/2
407 freqrange = deltafreq*(numpy.arange(self.nFFTPoints+extrapoints)-self.nFFTPoints/2.) - deltafreq/2
408
408
409 return freqrange
409 return freqrange
410
410
411 def getVelRange(self, extrapoints=0):
411 def getVelRange(self, extrapoints=0):
412
412
413 deltav = self.getVmax() / (self.nFFTPoints*self.ippFactor)
413 deltav = self.getVmax() / (self.nFFTPoints*self.ippFactor)
414 velrange = deltav*(numpy.arange(self.nFFTPoints+extrapoints)-self.nFFTPoints/2.) - deltav/2
414 velrange = deltav*(numpy.arange(self.nFFTPoints+extrapoints)-self.nFFTPoints/2.) - deltav/2
415
415
416 return velrange
416 return velrange
417
417
418 def getNPairs(self):
418 def getNPairs(self):
419
419
420 return len(self.pairsList)
420 return len(self.pairsList)
421
421
422 def getPairsIndexList(self):
422 def getPairsIndexList(self):
423
423
424 return range(self.nPairs)
424 return range(self.nPairs)
425
425
426 def getNormFactor(self):
426 def getNormFactor(self):
427 pwcode = 1
427 pwcode = 1
428 if self.flagDecodeData:
428 if self.flagDecodeData:
429 pwcode = numpy.sum(self.code[0]**2)
429 pwcode = numpy.sum(self.code[0]**2)
430 #normFactor = min(self.nFFTPoints,self.nProfiles)*self.nIncohInt*self.nCohInt*pwcode*self.windowOfFilter
430 #normFactor = min(self.nFFTPoints,self.nProfiles)*self.nIncohInt*self.nCohInt*pwcode*self.windowOfFilter
431 normFactor = self.nProfiles*self.nIncohInt*self.nCohInt*pwcode*self.windowOfFilter
431 normFactor = self.nProfiles*self.nIncohInt*self.nCohInt*pwcode*self.windowOfFilter
432
432
433 return normFactor
433 return normFactor
434
434
435 def getFlagCspc(self):
435 def getFlagCspc(self):
436
436
437 if self.data_cspc == None:
437 if self.data_cspc == None:
438 return True
438 return True
439
439
440 return False
440 return False
441
441
442 def getFlagDc(self):
442 def getFlagDc(self):
443
443
444 if self.data_dc == None:
444 if self.data_dc == None:
445 return True
445 return True
446
446
447 return False
447 return False
448
448
449 nPairs = property(getNPairs, "I'm the 'nPairs' property.")
449 nPairs = property(getNPairs, "I'm the 'nPairs' property.")
450 pairsIndexList = property(getPairsIndexList, "I'm the 'pairsIndexList' property.")
450 pairsIndexList = property(getPairsIndexList, "I'm the 'pairsIndexList' property.")
451 normFactor = property(getNormFactor, "I'm the 'getNormFactor' property.")
451 normFactor = property(getNormFactor, "I'm the 'getNormFactor' property.")
452 flag_cspc = property(getFlagCspc)
452 flag_cspc = property(getFlagCspc)
453 flag_dc = property(getFlagDc)
453 flag_dc = property(getFlagDc)
454
454
455 class SpectraHeis(JROData):
455 class SpectraHeis(JROData):
456
456
457 data_spc = None
457 data_spc = None
458
458
459 data_cspc = None
459 data_cspc = None
460
460
461 data_dc = None
461 data_dc = None
462
462
463 nFFTPoints = None
463 nFFTPoints = None
464
464
465 nPairs = None
465 nPairs = None
466
466
467 pairsList = None
467 pairsList = None
468
468
469 nIncohInt = None
469 nIncohInt = None
470
470
471 def __init__(self):
471 def __init__(self):
472
472
473 self.radarControllerHeaderObj = RadarControllerHeader()
473 self.radarControllerHeaderObj = RadarControllerHeader()
474
474
475 self.systemHeaderObj = SystemHeader()
475 self.systemHeaderObj = SystemHeader()
476
476
477 self.type = "SpectraHeis"
477 self.type = "SpectraHeis"
478
478
479 self.dtype = None
479 self.dtype = None
480
480
481 # self.nChannels = 0
481 # self.nChannels = 0
482
482
483 # self.nHeights = 0
483 # self.nHeights = 0
484
484
485 self.nProfiles = None
485 self.nProfiles = None
486
486
487 self.heightList = None
487 self.heightList = None
488
488
489 self.channelList = None
489 self.channelList = None
490
490
491 # self.channelIndexList = None
491 # self.channelIndexList = None
492
492
493 self.flagNoData = True
493 self.flagNoData = True
494
494
495 self.flagTimeBlock = False
495 self.flagTimeBlock = False
496
496
497 self.nPairs = 0
497 self.nPairs = 0
498
498
499 self.utctime = None
499 self.utctime = None
500
500
501 self.blocksize = None
501 self.blocksize = None
502
502
503 class Fits:
503 class Fits:
504
504
505 heightList = None
505 heightList = None
506
506
507 channelList = None
507 channelList = None
508
508
509 flagNoData = True
509 flagNoData = True
510
510
511 flagTimeBlock = False
511 flagTimeBlock = False
512
512
513 useLocalTime = False
513 useLocalTime = False
514
514
515 utctime = None
515 utctime = None
516
516
517 timeZone = None
517 timeZone = None
518
518
519 ippSeconds = None
519 ippSeconds = None
520
520
521 timeInterval = None
521 timeInterval = None
522
522
523 nCohInt = None
523 nCohInt = None
524
524
525 nIncohInt = None
525 nIncohInt = None
526
526
527 noise = None
527 noise = None
528
528
529 windowOfFilter = 1
529 windowOfFilter = 1
530
530
531 #Speed of ligth
531 #Speed of ligth
532 C = 3e8
532 C = 3e8
533
533
534 frequency = 49.92e6
534 frequency = 49.92e6
535
535
536 realtime = False
536 realtime = False
537
537
538
538
539 def __init__(self):
539 def __init__(self):
540
540
541 self.type = "Fits"
541 self.type = "Fits"
542
542
543 self.nProfiles = None
543 self.nProfiles = None
544
544
545 self.heightList = None
545 self.heightList = None
546
546
547 self.channelList = None
547 self.channelList = None
548
548
549 # self.channelIndexList = None
549 # self.channelIndexList = None
550
550
551 self.flagNoData = True
551 self.flagNoData = True
552
552
553 self.utctime = None
553 self.utctime = None
554
554
555 self.nCohInt = None
555 self.nCohInt = None
556
556
557 self.nIncohInt = None
557 self.nIncohInt = None
558
558
559 self.useLocalTime = True
559 self.useLocalTime = True
560
560
561 # self.utctime = None
561 # self.utctime = None
562 # self.timeZone = None
562 # self.timeZone = None
563 # self.ltctime = None
563 # self.ltctime = None
564 # self.timeInterval = None
564 # self.timeInterval = None
565 # self.header = None
565 # self.header = None
566 # self.data_header = None
566 # self.data_header = None
567 # self.data = None
567 # self.data = None
568 # self.datatime = None
568 # self.datatime = None
569 # self.flagNoData = False
569 # self.flagNoData = False
570 # self.expName = ''
570 # self.expName = ''
571 # self.nChannels = None
571 # self.nChannels = None
572 # self.nSamples = None
572 # self.nSamples = None
573 # self.dataBlocksPerFile = None
573 # self.dataBlocksPerFile = None
574 # self.comments = ''
574 # self.comments = ''
575 #
575 #
576
576
577
577
578 def getltctime(self):
578 def getltctime(self):
579
579
580 if self.useLocalTime:
580 if self.useLocalTime:
581 return self.utctime - self.timeZone*60
581 return self.utctime - self.timeZone*60
582
582
583 return self.utctime
583 return self.utctime
584
584
585 def getDatatime(self):
585 def getDatatime(self):
586
586
587 datatime = datetime.datetime.utcfromtimestamp(self.ltctime)
587 datatime = datetime.datetime.utcfromtimestamp(self.ltctime)
588 return datatime
588 return datatime
589
589
590 def getTimeRange(self):
590 def getTimeRange(self):
591
591
592 datatime = []
592 datatime = []
593
593
594 datatime.append(self.ltctime)
594 datatime.append(self.ltctime)
595 datatime.append(self.ltctime + self.timeInterval)
595 datatime.append(self.ltctime + self.timeInterval)
596
596
597 datatime = numpy.array(datatime)
597 datatime = numpy.array(datatime)
598
598
599 return datatime
599 return datatime
600
600
601 def getHeiRange(self):
601 def getHeiRange(self):
602
602
603 heis = self.heightList
603 heis = self.heightList
604
604
605 return heis
605 return heis
606
606
607 def isEmpty(self):
607 def isEmpty(self):
608
608
609 return self.flagNoData
609 return self.flagNoData
610
610
611 def getNHeights(self):
611 def getNHeights(self):
612
612
613 return len(self.heightList)
613 return len(self.heightList)
614
614
615 def getNChannels(self):
615 def getNChannels(self):
616
616
617 return len(self.channelList)
617 return len(self.channelList)
618
618
619 def getChannelIndexList(self):
619 def getChannelIndexList(self):
620
620
621 return range(self.nChannels)
621 return range(self.nChannels)
622
622
623 def getNoise(self, type = 1):
623 def getNoise(self, type = 1):
624
624
625 self.noise = numpy.zeros(self.nChannels)
625 self.noise = numpy.zeros(self.nChannels)
626
626
627 if type == 1:
627 if type == 1:
628 noise = self.getNoisebyHildebrand()
628 noise = self.getNoisebyHildebrand()
629
629
630 if type == 2:
630 if type == 2:
631 noise = self.getNoisebySort()
631 noise = self.getNoisebySort()
632
632
633 if type == 3:
633 if type == 3:
634 noise = self.getNoisebyWindow()
634 noise = self.getNoisebyWindow()
635
635
636 return noise
636 return noise
637
637
638 datatime = property(getDatatime, "I'm the 'datatime' property")
638 datatime = property(getDatatime, "I'm the 'datatime' property")
639 nHeights = property(getNHeights, "I'm the 'nHeights' property.")
639 nHeights = property(getNHeights, "I'm the 'nHeights' property.")
640 nChannels = property(getNChannels, "I'm the 'nChannel' property.")
640 nChannels = property(getNChannels, "I'm the 'nChannel' property.")
641 channelIndexList = property(getChannelIndexList, "I'm the 'channelIndexList' property.")
641 channelIndexList = property(getChannelIndexList, "I'm the 'channelIndexList' property.")
642 noise = property(getNoise, "I'm the 'nHeights' property.")
642 noise = property(getNoise, "I'm the 'nHeights' property.")
643 datatime = property(getDatatime, "I'm the 'datatime' property")
643 datatime = property(getDatatime, "I'm the 'datatime' property")
644 ltctime = property(getltctime, "I'm the 'ltctime' property")
644 ltctime = property(getltctime, "I'm the 'ltctime' property")
645
645
646 ltctime = property(getltctime, "I'm the 'ltctime' property")
646 ltctime = property(getltctime, "I'm the 'ltctime' property")
647
647
648 class AMISR:
648 class AMISR:
649 def __init__(self):
649 def __init__(self):
650 self.flagNoData = True
650 self.flagNoData = True
651 self.data = None
651 self.data = None
652 self.utctime = None
652 self.utctime = None
653 self.type = "AMISR"
653 self.type = "AMISR"
654
654
655 #propiedades para compatibilidad con Voltages
655 #propiedades para compatibilidad con Voltages
656 self.timeZone = 0#timezone like jroheader, difference in minutes between UTC and localtime
656 self.timeZone = 300#timezone like jroheader, difference in minutes between UTC and localtime
657 self.dstFlag = 0#self.dataIn.dstFlag
657 self.dstFlag = 0#self.dataIn.dstFlag
658 self.errorCount = 0#self.dataIn.errorCount
658 self.errorCount = 0#self.dataIn.errorCount
659 self.useLocalTime = True#self.dataIn.useLocalTime
659 self.useLocalTime = True#self.dataIn.useLocalTime
660
660
661 self.radarControllerHeaderObj = None#self.dataIn.radarControllerHeaderObj.copy()
661 self.radarControllerHeaderObj = None#self.dataIn.radarControllerHeaderObj.copy()
662 self.systemHeaderObj = None#self.dataIn.systemHeaderObj.copy()
662 self.systemHeaderObj = None#self.dataIn.systemHeaderObj.copy()
663 self.channelList = [0]#self.dataIn.channelList esto solo aplica para el caso de AMISR
663 self.channelList = [0]#self.dataIn.channelList esto solo aplica para el caso de AMISR
664 self.dtype = numpy.dtype([('real','<f4'),('imag','<f4')])
664 self.dtype = numpy.dtype([('real','<f4'),('imag','<f4')])
665
665
666 self.flagTimeBlock = None#self.dataIn.flagTimeBlock
666 self.flagTimeBlock = None#self.dataIn.flagTimeBlock
667 #self.utctime = #self.firstdatatime
667 #self.utctime = #self.firstdatatime
668 self.flagDecodeData = None#self.dataIn.flagDecodeData #asumo q la data esta decodificada
668 self.flagDecodeData = None#self.dataIn.flagDecodeData #asumo q la data esta decodificada
669 self.flagDeflipData = None#self.dataIn.flagDeflipData #asumo q la data esta sin flip
669 self.flagDeflipData = None#self.dataIn.flagDeflipData #asumo q la data esta sin flip
670
670
671 self.nCohInt = 1#self.dataIn.nCohInt
671 self.nCohInt = 1#self.dataIn.nCohInt
672 self.nIncohInt = 1
672 self.nIncohInt = 1
673 self.ippSeconds = None#self.dataIn.ippSeconds, segun el filename/Setup/Tufile
673 self.ippSeconds = None#self.dataIn.ippSeconds, segun el filename/Setup/Tufile
674 self.windowOfFilter = None#self.dataIn.windowOfFilter
674 self.windowOfFilter = None#self.dataIn.windowOfFilter
675
675
676 self.timeInterval = None#self.dataIn.timeInterval*self.dataOut.nFFTPoints*self.dataOut.nIncohInt
676 self.timeInterval = None#self.dataIn.timeInterval*self.dataOut.nFFTPoints*self.dataOut.nIncohInt
677 self.frequency = None#self.dataIn.frequency
677 self.frequency = None#self.dataIn.frequency
678 self.realtime = 0#self.dataIn.realtime
678 self.realtime = 0#self.dataIn.realtime
679
679
680 #actualizar en la lectura de datos
680 #actualizar en la lectura de datos
681 self.heightList = None#self.dataIn.heightList
681 self.heightList = None#self.dataIn.heightList
682 self.nProfiles = None#self.dataOut.nFFTPoints
682 self.nProfiles = None#Number of samples or nFFTPoints
683 self.nRecords = None
684 self.nBeams = None
683 self.nBaud = None#self.dataIn.nBaud
685 self.nBaud = None#self.dataIn.nBaud
684 self.nCode = None#self.dataIn.nCode
686 self.nCode = None#self.dataIn.nCode
685 self.code = None#self.dataIn.code
687 self.code = None#self.dataIn.code
686
688
687 #consideracion para los Beams
689 #consideracion para los Beams
688 self.beamCodeDict = None
690 self.beamCodeDict = None
689 self.beamRangeDict = None
691 self.beamRangeDict = None
690
692
691 def copy(self, inputObj=None):
693 def copy(self, inputObj=None):
692
694
693 if inputObj == None:
695 if inputObj == None:
694 return copy.deepcopy(self)
696 return copy.deepcopy(self)
695
697
696 for key in inputObj.__dict__.keys():
698 for key in inputObj.__dict__.keys():
697 self.__dict__[key] = inputObj.__dict__[key]
699 self.__dict__[key] = inputObj.__dict__[key]
698
700
699
701
700 def isEmpty(self):
702 def isEmpty(self):
701
703
702 return self.flagNoData No newline at end of file
704 return self.flagNoData
@@ -1,3926 +1,3933
1 '''
1 '''
2
2
3 $Author: murco $
3 $Author: murco $
4 $Id: JRODataIO.py 169 2012-11-19 21:57:03Z murco $
4 $Id: JRODataIO.py 169 2012-11-19 21:57:03Z murco $
5 '''
5 '''
6
6
7 import os, sys
7 import os, sys
8 import glob
8 import glob
9 import time
9 import time
10 import numpy
10 import numpy
11 import fnmatch
11 import fnmatch
12 import time, datetime
12 import time, datetime
13 import h5py
13 import h5py
14 import re
14 import re
15 from xml.etree.ElementTree import Element, SubElement, ElementTree
15 from xml.etree.ElementTree import Element, SubElement, ElementTree
16 try:
16 try:
17 import pyfits
17 import pyfits
18 except:
18 except:
19 print "pyfits module has not been imported, it should be installed to save files in fits format"
19 print "pyfits module has not been imported, it should be installed to save files in fits format"
20
20
21 from jrodata import *
21 from jrodata import *
22 from jroheaderIO import *
22 from jroheaderIO import *
23 from jroprocessing import *
23 from jroprocessing import *
24
24
25 LOCALTIME = True #-18000
25 LOCALTIME = True #-18000
26
26
27 def isNumber(str):
27 def isNumber(str):
28 """
28 """
29 Chequea si el conjunto de caracteres que componen un string puede ser convertidos a un numero.
29 Chequea si el conjunto de caracteres que componen un string puede ser convertidos a un numero.
30
30
31 Excepciones:
31 Excepciones:
32 Si un determinado string no puede ser convertido a numero
32 Si un determinado string no puede ser convertido a numero
33 Input:
33 Input:
34 str, string al cual se le analiza para determinar si convertible a un numero o no
34 str, string al cual se le analiza para determinar si convertible a un numero o no
35
35
36 Return:
36 Return:
37 True : si el string es uno numerico
37 True : si el string es uno numerico
38 False : no es un string numerico
38 False : no es un string numerico
39 """
39 """
40 try:
40 try:
41 float( str )
41 float( str )
42 return True
42 return True
43 except:
43 except:
44 return False
44 return False
45
45
46 def isThisFileinRange(filename, startUTSeconds, endUTSeconds):
46 def isThisFileinRange(filename, startUTSeconds, endUTSeconds):
47 """
47 """
48 Esta funcion determina si un archivo de datos se encuentra o no dentro del rango de fecha especificado.
48 Esta funcion determina si un archivo de datos se encuentra o no dentro del rango de fecha especificado.
49
49
50 Inputs:
50 Inputs:
51 filename : nombre completo del archivo de datos en formato Jicamarca (.r)
51 filename : nombre completo del archivo de datos en formato Jicamarca (.r)
52
52
53 startUTSeconds : fecha inicial del rango seleccionado. La fecha esta dada en
53 startUTSeconds : fecha inicial del rango seleccionado. La fecha esta dada en
54 segundos contados desde 01/01/1970.
54 segundos contados desde 01/01/1970.
55 endUTSeconds : fecha final del rango seleccionado. La fecha esta dada en
55 endUTSeconds : fecha final del rango seleccionado. La fecha esta dada en
56 segundos contados desde 01/01/1970.
56 segundos contados desde 01/01/1970.
57
57
58 Return:
58 Return:
59 Boolean : Retorna True si el archivo de datos contiene datos en el rango de
59 Boolean : Retorna True si el archivo de datos contiene datos en el rango de
60 fecha especificado, de lo contrario retorna False.
60 fecha especificado, de lo contrario retorna False.
61
61
62 Excepciones:
62 Excepciones:
63 Si el archivo no existe o no puede ser abierto
63 Si el archivo no existe o no puede ser abierto
64 Si la cabecera no puede ser leida.
64 Si la cabecera no puede ser leida.
65
65
66 """
66 """
67 basicHeaderObj = BasicHeader(LOCALTIME)
67 basicHeaderObj = BasicHeader(LOCALTIME)
68
68
69 try:
69 try:
70 fp = open(filename,'rb')
70 fp = open(filename,'rb')
71 except:
71 except:
72 raise IOError, "The file %s can't be opened" %(filename)
72 raise IOError, "The file %s can't be opened" %(filename)
73
73
74 sts = basicHeaderObj.read(fp)
74 sts = basicHeaderObj.read(fp)
75 fp.close()
75 fp.close()
76
76
77 if not(sts):
77 if not(sts):
78 print "Skipping the file %s because it has not a valid header" %(filename)
78 print "Skipping the file %s because it has not a valid header" %(filename)
79 return 0
79 return 0
80
80
81 if not ((startUTSeconds <= basicHeaderObj.utc) and (endUTSeconds > basicHeaderObj.utc)):
81 if not ((startUTSeconds <= basicHeaderObj.utc) and (endUTSeconds > basicHeaderObj.utc)):
82 return 0
82 return 0
83
83
84 return 1
84 return 1
85
85
86 def isFileinThisTime(filename, startTime, endTime):
86 def isFileinThisTime(filename, startTime, endTime):
87 """
87 """
88 Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado.
88 Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado.
89
89
90 Inputs:
90 Inputs:
91 filename : nombre completo del archivo de datos en formato Jicamarca (.r)
91 filename : nombre completo del archivo de datos en formato Jicamarca (.r)
92
92
93 startTime : tiempo inicial del rango seleccionado en formato datetime.time
93 startTime : tiempo inicial del rango seleccionado en formato datetime.time
94
94
95 endTime : tiempo final del rango seleccionado en formato datetime.time
95 endTime : tiempo final del rango seleccionado en formato datetime.time
96
96
97 Return:
97 Return:
98 Boolean : Retorna True si el archivo de datos contiene datos en el rango de
98 Boolean : Retorna True si el archivo de datos contiene datos en el rango de
99 fecha especificado, de lo contrario retorna False.
99 fecha especificado, de lo contrario retorna False.
100
100
101 Excepciones:
101 Excepciones:
102 Si el archivo no existe o no puede ser abierto
102 Si el archivo no existe o no puede ser abierto
103 Si la cabecera no puede ser leida.
103 Si la cabecera no puede ser leida.
104
104
105 """
105 """
106
106
107
107
108 try:
108 try:
109 fp = open(filename,'rb')
109 fp = open(filename,'rb')
110 except:
110 except:
111 raise IOError, "The file %s can't be opened" %(filename)
111 raise IOError, "The file %s can't be opened" %(filename)
112
112
113 basicHeaderObj = BasicHeader(LOCALTIME)
113 basicHeaderObj = BasicHeader(LOCALTIME)
114 sts = basicHeaderObj.read(fp)
114 sts = basicHeaderObj.read(fp)
115 fp.close()
115 fp.close()
116
116
117 thisDatetime = basicHeaderObj.datatime
117 thisDatetime = basicHeaderObj.datatime
118 thisTime = basicHeaderObj.datatime.time()
118 thisTime = basicHeaderObj.datatime.time()
119
119
120 if not(sts):
120 if not(sts):
121 print "Skipping the file %s because it has not a valid header" %(filename)
121 print "Skipping the file %s because it has not a valid header" %(filename)
122 return None
122 return None
123
123
124 if not ((startTime <= thisTime) and (endTime > thisTime)):
124 if not ((startTime <= thisTime) and (endTime > thisTime)):
125 return None
125 return None
126
126
127 return thisDatetime
127 return thisDatetime
128
128
129 def getFileFromSet(path,ext,set):
129 def getFileFromSet(path,ext,set):
130 validFilelist = []
130 validFilelist = []
131 fileList = os.listdir(path)
131 fileList = os.listdir(path)
132
132
133 # 0 1234 567 89A BCDE
133 # 0 1234 567 89A BCDE
134 # H YYYY DDD SSS .ext
134 # H YYYY DDD SSS .ext
135
135
136 for file in fileList:
136 for file in fileList:
137 try:
137 try:
138 year = int(file[1:5])
138 year = int(file[1:5])
139 doy = int(file[5:8])
139 doy = int(file[5:8])
140
140
141
141
142 except:
142 except:
143 continue
143 continue
144
144
145 if (os.path.splitext(file)[-1].lower() != ext.lower()):
145 if (os.path.splitext(file)[-1].lower() != ext.lower()):
146 continue
146 continue
147
147
148 validFilelist.append(file)
148 validFilelist.append(file)
149
149
150 myfile = fnmatch.filter(validFilelist,'*%4.4d%3.3d%3.3d*'%(year,doy,set))
150 myfile = fnmatch.filter(validFilelist,'*%4.4d%3.3d%3.3d*'%(year,doy,set))
151
151
152 if len(myfile)!= 0:
152 if len(myfile)!= 0:
153 return myfile[0]
153 return myfile[0]
154 else:
154 else:
155 filename = '*%4.4d%3.3d%3.3d%s'%(year,doy,set,ext.lower())
155 filename = '*%4.4d%3.3d%3.3d%s'%(year,doy,set,ext.lower())
156 print 'the filename %s does not exist'%filename
156 print 'the filename %s does not exist'%filename
157 print '...going to the last file: '
157 print '...going to the last file: '
158
158
159 if validFilelist:
159 if validFilelist:
160 validFilelist = sorted( validFilelist, key=str.lower )
160 validFilelist = sorted( validFilelist, key=str.lower )
161 return validFilelist[-1]
161 return validFilelist[-1]
162
162
163 return None
163 return None
164
164
165
165
166 def getlastFileFromPath(path, ext):
166 def getlastFileFromPath(path, ext):
167 """
167 """
168 Depura el fileList dejando solo los que cumplan el formato de "PYYYYDDDSSS.ext"
168 Depura el fileList dejando solo los que cumplan el formato de "PYYYYDDDSSS.ext"
169 al final de la depuracion devuelve el ultimo file de la lista que quedo.
169 al final de la depuracion devuelve el ultimo file de la lista que quedo.
170
170
171 Input:
171 Input:
172 fileList : lista conteniendo todos los files (sin path) que componen una determinada carpeta
172 fileList : lista conteniendo todos los files (sin path) que componen una determinada carpeta
173 ext : extension de los files contenidos en una carpeta
173 ext : extension de los files contenidos en una carpeta
174
174
175 Return:
175 Return:
176 El ultimo file de una determinada carpeta, no se considera el path.
176 El ultimo file de una determinada carpeta, no se considera el path.
177 """
177 """
178 validFilelist = []
178 validFilelist = []
179 fileList = os.listdir(path)
179 fileList = os.listdir(path)
180
180
181 # 0 1234 567 89A BCDE
181 # 0 1234 567 89A BCDE
182 # H YYYY DDD SSS .ext
182 # H YYYY DDD SSS .ext
183
183
184 for file in fileList:
184 for file in fileList:
185 try:
185 try:
186 year = int(file[1:5])
186 year = int(file[1:5])
187 doy = int(file[5:8])
187 doy = int(file[5:8])
188
188
189
189
190 except:
190 except:
191 continue
191 continue
192
192
193 if (os.path.splitext(file)[-1].lower() != ext.lower()):
193 if (os.path.splitext(file)[-1].lower() != ext.lower()):
194 continue
194 continue
195
195
196 validFilelist.append(file)
196 validFilelist.append(file)
197
197
198 if validFilelist:
198 if validFilelist:
199 validFilelist = sorted( validFilelist, key=str.lower )
199 validFilelist = sorted( validFilelist, key=str.lower )
200 return validFilelist[-1]
200 return validFilelist[-1]
201
201
202 return None
202 return None
203
203
204 def checkForRealPath(path, foldercounter, year, doy, set, ext):
204 def checkForRealPath(path, foldercounter, year, doy, set, ext):
205 """
205 """
206 Por ser Linux Case Sensitive entonces checkForRealPath encuentra el nombre correcto de un path,
206 Por ser Linux Case Sensitive entonces checkForRealPath encuentra el nombre correcto de un path,
207 Prueba por varias combinaciones de nombres entre mayusculas y minusculas para determinar
207 Prueba por varias combinaciones de nombres entre mayusculas y minusculas para determinar
208 el path exacto de un determinado file.
208 el path exacto de un determinado file.
209
209
210 Example :
210 Example :
211 nombre correcto del file es .../.../D2009307/P2009307367.ext
211 nombre correcto del file es .../.../D2009307/P2009307367.ext
212
212
213 Entonces la funcion prueba con las siguientes combinaciones
213 Entonces la funcion prueba con las siguientes combinaciones
214 .../.../y2009307367.ext
214 .../.../y2009307367.ext
215 .../.../Y2009307367.ext
215 .../.../Y2009307367.ext
216 .../.../x2009307/y2009307367.ext
216 .../.../x2009307/y2009307367.ext
217 .../.../x2009307/Y2009307367.ext
217 .../.../x2009307/Y2009307367.ext
218 .../.../X2009307/y2009307367.ext
218 .../.../X2009307/y2009307367.ext
219 .../.../X2009307/Y2009307367.ext
219 .../.../X2009307/Y2009307367.ext
220 siendo para este caso, la ultima combinacion de letras, identica al file buscado
220 siendo para este caso, la ultima combinacion de letras, identica al file buscado
221
221
222 Return:
222 Return:
223 Si encuentra la cobinacion adecuada devuelve el path completo y el nombre del file
223 Si encuentra la cobinacion adecuada devuelve el path completo y el nombre del file
224 caso contrario devuelve None como path y el la ultima combinacion de nombre en mayusculas
224 caso contrario devuelve None como path y el la ultima combinacion de nombre en mayusculas
225 para el filename
225 para el filename
226 """
226 """
227 fullfilename = None
227 fullfilename = None
228 find_flag = False
228 find_flag = False
229 filename = None
229 filename = None
230
230
231 prefixDirList = [None,'d','D']
231 prefixDirList = [None,'d','D']
232 if ext.lower() == ".r": #voltage
232 if ext.lower() == ".r": #voltage
233 prefixFileList = ['d','D']
233 prefixFileList = ['d','D']
234 elif ext.lower() == ".pdata": #spectra
234 elif ext.lower() == ".pdata": #spectra
235 prefixFileList = ['p','P']
235 prefixFileList = ['p','P']
236 else:
236 else:
237 return None, filename
237 return None, filename
238
238
239 #barrido por las combinaciones posibles
239 #barrido por las combinaciones posibles
240 for prefixDir in prefixDirList:
240 for prefixDir in prefixDirList:
241 thispath = path
241 thispath = path
242 if prefixDir != None:
242 if prefixDir != None:
243 #formo el nombre del directorio xYYYYDDD (x=d o x=D)
243 #formo el nombre del directorio xYYYYDDD (x=d o x=D)
244 if foldercounter == 0:
244 if foldercounter == 0:
245 thispath = os.path.join(path, "%s%04d%03d" % ( prefixDir, year, doy ))
245 thispath = os.path.join(path, "%s%04d%03d" % ( prefixDir, year, doy ))
246 else:
246 else:
247 thispath = os.path.join(path, "%s%04d%03d_%02d" % ( prefixDir, year, doy , foldercounter))
247 thispath = os.path.join(path, "%s%04d%03d_%02d" % ( prefixDir, year, doy , foldercounter))
248 for prefixFile in prefixFileList: #barrido por las dos combinaciones posibles de "D"
248 for prefixFile in prefixFileList: #barrido por las dos combinaciones posibles de "D"
249 filename = "%s%04d%03d%03d%s" % ( prefixFile, year, doy, set, ext ) #formo el nombre del file xYYYYDDDSSS.ext
249 filename = "%s%04d%03d%03d%s" % ( prefixFile, year, doy, set, ext ) #formo el nombre del file xYYYYDDDSSS.ext
250 fullfilename = os.path.join( thispath, filename ) #formo el path completo
250 fullfilename = os.path.join( thispath, filename ) #formo el path completo
251
251
252 if os.path.exists( fullfilename ): #verifico que exista
252 if os.path.exists( fullfilename ): #verifico que exista
253 find_flag = True
253 find_flag = True
254 break
254 break
255 if find_flag:
255 if find_flag:
256 break
256 break
257
257
258 if not(find_flag):
258 if not(find_flag):
259 return None, filename
259 return None, filename
260
260
261 return fullfilename, filename
261 return fullfilename, filename
262
262
263 def isDoyFolder(folder):
263 def isDoyFolder(folder):
264 try:
264 try:
265 year = int(folder[1:5])
265 year = int(folder[1:5])
266 except:
266 except:
267 return 0
267 return 0
268
268
269 try:
269 try:
270 doy = int(folder[5:8])
270 doy = int(folder[5:8])
271 except:
271 except:
272 return 0
272 return 0
273
273
274 return 1
274 return 1
275
275
276 class JRODataIO:
276 class JRODataIO:
277
277
278 c = 3E8
278 c = 3E8
279
279
280 isConfig = False
280 isConfig = False
281
281
282 basicHeaderObj = BasicHeader(LOCALTIME)
282 basicHeaderObj = BasicHeader(LOCALTIME)
283
283
284 systemHeaderObj = SystemHeader()
284 systemHeaderObj = SystemHeader()
285
285
286 radarControllerHeaderObj = RadarControllerHeader()
286 radarControllerHeaderObj = RadarControllerHeader()
287
287
288 processingHeaderObj = ProcessingHeader()
288 processingHeaderObj = ProcessingHeader()
289
289
290 online = 0
290 online = 0
291
291
292 dtype = None
292 dtype = None
293
293
294 pathList = []
294 pathList = []
295
295
296 filenameList = []
296 filenameList = []
297
297
298 filename = None
298 filename = None
299
299
300 ext = None
300 ext = None
301
301
302 flagIsNewFile = 1
302 flagIsNewFile = 1
303
303
304 flagTimeBlock = 0
304 flagTimeBlock = 0
305
305
306 flagIsNewBlock = 0
306 flagIsNewBlock = 0
307
307
308 fp = None
308 fp = None
309
309
310 firstHeaderSize = 0
310 firstHeaderSize = 0
311
311
312 basicHeaderSize = 24
312 basicHeaderSize = 24
313
313
314 versionFile = 1103
314 versionFile = 1103
315
315
316 fileSize = None
316 fileSize = None
317
317
318 ippSeconds = None
318 ippSeconds = None
319
319
320 fileSizeByHeader = None
320 fileSizeByHeader = None
321
321
322 fileIndex = None
322 fileIndex = None
323
323
324 profileIndex = None
324 profileIndex = None
325
325
326 blockIndex = None
326 blockIndex = None
327
327
328 nTotalBlocks = None
328 nTotalBlocks = None
329
329
330 maxTimeStep = 30
330 maxTimeStep = 30
331
331
332 lastUTTime = None
332 lastUTTime = None
333
333
334 datablock = None
334 datablock = None
335
335
336 dataOut = None
336 dataOut = None
337
337
338 blocksize = None
338 blocksize = None
339
339
340 def __init__(self):
340 def __init__(self):
341
341
342 raise ValueError, "Not implemented"
342 raise ValueError, "Not implemented"
343
343
344 def run(self):
344 def run(self):
345
345
346 raise ValueError, "Not implemented"
346 raise ValueError, "Not implemented"
347
347
348 def getOutput(self):
348 def getOutput(self):
349
349
350 return self.dataOut
350 return self.dataOut
351
351
352 class JRODataReader(JRODataIO, ProcessingUnit):
352 class JRODataReader(JRODataIO, ProcessingUnit):
353
353
354 nReadBlocks = 0
354 nReadBlocks = 0
355
355
356 delay = 10 #number of seconds waiting a new file
356 delay = 10 #number of seconds waiting a new file
357
357
358 nTries = 3 #quantity tries
358 nTries = 3 #quantity tries
359
359
360 nFiles = 3 #number of files for searching
360 nFiles = 3 #number of files for searching
361
361
362 path = None
362 path = None
363
363
364 foldercounter = 0
364 foldercounter = 0
365
365
366 flagNoMoreFiles = 0
366 flagNoMoreFiles = 0
367
367
368 datetimeList = []
368 datetimeList = []
369
369
370 __isFirstTimeOnline = 1
370 __isFirstTimeOnline = 1
371
371
372 __printInfo = True
372 __printInfo = True
373
373
374 profileIndex = None
374 profileIndex = None
375
375
376 def __init__(self):
376 def __init__(self):
377
377
378 """
378 """
379
379
380 """
380 """
381
381
382 raise ValueError, "This method has not been implemented"
382 raise ValueError, "This method has not been implemented"
383
383
384
384
385 def createObjByDefault(self):
385 def createObjByDefault(self):
386 """
386 """
387
387
388 """
388 """
389 raise ValueError, "This method has not been implemented"
389 raise ValueError, "This method has not been implemented"
390
390
391 def getBlockDimension(self):
391 def getBlockDimension(self):
392
392
393 raise ValueError, "No implemented"
393 raise ValueError, "No implemented"
394
394
395 def __searchFilesOffLine(self,
395 def __searchFilesOffLine(self,
396 path,
396 path,
397 startDate,
397 startDate,
398 endDate,
398 endDate,
399 startTime=datetime.time(0,0,0),
399 startTime=datetime.time(0,0,0),
400 endTime=datetime.time(23,59,59),
400 endTime=datetime.time(23,59,59),
401 set=None,
401 set=None,
402 expLabel='',
402 expLabel='',
403 ext='.r',
403 ext='.r',
404 walk=True):
404 walk=True):
405
405
406 pathList = []
406 pathList = []
407
407
408 if not walk:
408 if not walk:
409 #pathList.append(path)
409 #pathList.append(path)
410 multi_path = path.split(',')
410 multi_path = path.split(',')
411 for single_path in multi_path:
411 for single_path in multi_path:
412 pathList.append(single_path)
412 pathList.append(single_path)
413
413
414 else:
414 else:
415 #dirList = []
415 #dirList = []
416 multi_path = path.split(',')
416 multi_path = path.split(',')
417 for single_path in multi_path:
417 for single_path in multi_path:
418 dirList = []
418 dirList = []
419 for thisPath in os.listdir(single_path):
419 for thisPath in os.listdir(single_path):
420 if not os.path.isdir(os.path.join(single_path,thisPath)):
420 if not os.path.isdir(os.path.join(single_path,thisPath)):
421 continue
421 continue
422 if not isDoyFolder(thisPath):
422 if not isDoyFolder(thisPath):
423 continue
423 continue
424
424
425 dirList.append(thisPath)
425 dirList.append(thisPath)
426
426
427 if not(dirList):
427 if not(dirList):
428 return None, None
428 return None, None
429
429
430 thisDate = startDate
430 thisDate = startDate
431
431
432 while(thisDate <= endDate):
432 while(thisDate <= endDate):
433 year = thisDate.timetuple().tm_year
433 year = thisDate.timetuple().tm_year
434 doy = thisDate.timetuple().tm_yday
434 doy = thisDate.timetuple().tm_yday
435
435
436 matchlist = fnmatch.filter(dirList, '?' + '%4.4d%3.3d' % (year,doy) + '*')
436 matchlist = fnmatch.filter(dirList, '?' + '%4.4d%3.3d' % (year,doy) + '*')
437 if len(matchlist) == 0:
437 if len(matchlist) == 0:
438 thisDate += datetime.timedelta(1)
438 thisDate += datetime.timedelta(1)
439 continue
439 continue
440 for match in matchlist:
440 for match in matchlist:
441 pathList.append(os.path.join(single_path,match,expLabel))
441 pathList.append(os.path.join(single_path,match,expLabel))
442
442
443 thisDate += datetime.timedelta(1)
443 thisDate += datetime.timedelta(1)
444
444
445 if pathList == []:
445 if pathList == []:
446 print "Any folder was found for the date range: %s-%s" %(startDate, endDate)
446 print "Any folder was found for the date range: %s-%s" %(startDate, endDate)
447 return None, None
447 return None, None
448
448
449 print "%d folder(s) was(were) found for the date range: %s - %s" %(len(pathList), startDate, endDate)
449 print "%d folder(s) was(were) found for the date range: %s - %s" %(len(pathList), startDate, endDate)
450
450
451 filenameList = []
451 filenameList = []
452 datetimeList = []
452 datetimeList = []
453 pathDict = {}
453 pathDict = {}
454 filenameList_to_sort = []
454 filenameList_to_sort = []
455
455
456 for i in range(len(pathList)):
456 for i in range(len(pathList)):
457
457
458 thisPath = pathList[i]
458 thisPath = pathList[i]
459
459
460 fileList = glob.glob1(thisPath, "*%s" %ext)
460 fileList = glob.glob1(thisPath, "*%s" %ext)
461 fileList.sort()
461 fileList.sort()
462 pathDict.setdefault(fileList[0])
462 pathDict.setdefault(fileList[0])
463 pathDict[fileList[0]] = i
463 pathDict[fileList[0]] = i
464 filenameList_to_sort.append(fileList[0])
464 filenameList_to_sort.append(fileList[0])
465
465
466 filenameList_to_sort.sort()
466 filenameList_to_sort.sort()
467
467
468 for file in filenameList_to_sort:
468 for file in filenameList_to_sort:
469 thisPath = pathList[pathDict[file]]
469 thisPath = pathList[pathDict[file]]
470
470
471 fileList = glob.glob1(thisPath, "*%s" %ext)
471 fileList = glob.glob1(thisPath, "*%s" %ext)
472 fileList.sort()
472 fileList.sort()
473
473
474 for file in fileList:
474 for file in fileList:
475
475
476 filename = os.path.join(thisPath,file)
476 filename = os.path.join(thisPath,file)
477 thisDatetime = isFileinThisTime(filename, startTime, endTime)
477 thisDatetime = isFileinThisTime(filename, startTime, endTime)
478
478
479 if not(thisDatetime):
479 if not(thisDatetime):
480 continue
480 continue
481
481
482 filenameList.append(filename)
482 filenameList.append(filename)
483 datetimeList.append(thisDatetime)
483 datetimeList.append(thisDatetime)
484
484
485 if not(filenameList):
485 if not(filenameList):
486 print "Any file was found for the time range %s - %s" %(startTime, endTime)
486 print "Any file was found for the time range %s - %s" %(startTime, endTime)
487 return None, None
487 return None, None
488
488
489 print "%d file(s) was(were) found for the time range: %s - %s" %(len(filenameList), startTime, endTime)
489 print "%d file(s) was(were) found for the time range: %s - %s" %(len(filenameList), startTime, endTime)
490 print
490 print
491
491
492 for i in range(len(filenameList)):
492 for i in range(len(filenameList)):
493 print "%s -> [%s]" %(filenameList[i], datetimeList[i].ctime())
493 print "%s -> [%s]" %(filenameList[i], datetimeList[i].ctime())
494
494
495 self.filenameList = filenameList
495 self.filenameList = filenameList
496 self.datetimeList = datetimeList
496 self.datetimeList = datetimeList
497
497
498 return pathList, filenameList
498 return pathList, filenameList
499
499
500 def __searchFilesOnLine(self, path, expLabel = "", ext = None, walk=True, set=None):
500 def __searchFilesOnLine(self, path, expLabel = "", ext = None, walk=True, set=None):
501
501
502 """
502 """
503 Busca el ultimo archivo de la ultima carpeta (determinada o no por startDateTime) y
503 Busca el ultimo archivo de la ultima carpeta (determinada o no por startDateTime) y
504 devuelve el archivo encontrado ademas de otros datos.
504 devuelve el archivo encontrado ademas de otros datos.
505
505
506 Input:
506 Input:
507 path : carpeta donde estan contenidos los files que contiene data
507 path : carpeta donde estan contenidos los files que contiene data
508
508
509 expLabel : Nombre del subexperimento (subfolder)
509 expLabel : Nombre del subexperimento (subfolder)
510
510
511 ext : extension de los files
511 ext : extension de los files
512
512
513 walk : Si es habilitado no realiza busquedas dentro de los ubdirectorios (doypath)
513 walk : Si es habilitado no realiza busquedas dentro de los ubdirectorios (doypath)
514
514
515 Return:
515 Return:
516 directory : eL directorio donde esta el file encontrado
516 directory : eL directorio donde esta el file encontrado
517 filename : el ultimo file de una determinada carpeta
517 filename : el ultimo file de una determinada carpeta
518 year : el anho
518 year : el anho
519 doy : el numero de dia del anho
519 doy : el numero de dia del anho
520 set : el set del archivo
520 set : el set del archivo
521
521
522
522
523 """
523 """
524 dirList = []
524 dirList = []
525
525
526 if not walk:
526 if not walk:
527 fullpath = path
527 fullpath = path
528 foldercounter = 0
528 foldercounter = 0
529 else:
529 else:
530 #Filtra solo los directorios
530 #Filtra solo los directorios
531 for thisPath in os.listdir(path):
531 for thisPath in os.listdir(path):
532 if not os.path.isdir(os.path.join(path,thisPath)):
532 if not os.path.isdir(os.path.join(path,thisPath)):
533 continue
533 continue
534 if not isDoyFolder(thisPath):
534 if not isDoyFolder(thisPath):
535 continue
535 continue
536
536
537 dirList.append(thisPath)
537 dirList.append(thisPath)
538
538
539 if not(dirList):
539 if not(dirList):
540 return None, None, None, None, None, None
540 return None, None, None, None, None, None
541
541
542 dirList = sorted( dirList, key=str.lower )
542 dirList = sorted( dirList, key=str.lower )
543
543
544 doypath = dirList[-1]
544 doypath = dirList[-1]
545 foldercounter = int(doypath.split('_')[1]) if len(doypath.split('_'))>1 else 0
545 foldercounter = int(doypath.split('_')[1]) if len(doypath.split('_'))>1 else 0
546 fullpath = os.path.join(path, doypath, expLabel)
546 fullpath = os.path.join(path, doypath, expLabel)
547
547
548
548
549 print "%s folder was found: " %(fullpath )
549 print "%s folder was found: " %(fullpath )
550
550
551 if set == None:
551 if set == None:
552 filename = getlastFileFromPath(fullpath, ext)
552 filename = getlastFileFromPath(fullpath, ext)
553 else:
553 else:
554 filename = getFileFromSet(fullpath, ext, set)
554 filename = getFileFromSet(fullpath, ext, set)
555
555
556 if not(filename):
556 if not(filename):
557 return None, None, None, None, None, None
557 return None, None, None, None, None, None
558
558
559 print "%s file was found" %(filename)
559 print "%s file was found" %(filename)
560
560
561 if not(self.__verifyFile(os.path.join(fullpath, filename))):
561 if not(self.__verifyFile(os.path.join(fullpath, filename))):
562 return None, None, None, None, None, None
562 return None, None, None, None, None, None
563
563
564 year = int( filename[1:5] )
564 year = int( filename[1:5] )
565 doy = int( filename[5:8] )
565 doy = int( filename[5:8] )
566 set = int( filename[8:11] )
566 set = int( filename[8:11] )
567
567
568 return fullpath, foldercounter, filename, year, doy, set
568 return fullpath, foldercounter, filename, year, doy, set
569
569
570 def __setNextFileOffline(self):
570 def __setNextFileOffline(self):
571
571
572 idFile = self.fileIndex
572 idFile = self.fileIndex
573
573
574 while (True):
574 while (True):
575 idFile += 1
575 idFile += 1
576 if not(idFile < len(self.filenameList)):
576 if not(idFile < len(self.filenameList)):
577 self.flagNoMoreFiles = 1
577 self.flagNoMoreFiles = 1
578 print "No more Files"
578 print "No more Files"
579 return 0
579 return 0
580
580
581 filename = self.filenameList[idFile]
581 filename = self.filenameList[idFile]
582
582
583 if not(self.__verifyFile(filename)):
583 if not(self.__verifyFile(filename)):
584 continue
584 continue
585
585
586 fileSize = os.path.getsize(filename)
586 fileSize = os.path.getsize(filename)
587 fp = open(filename,'rb')
587 fp = open(filename,'rb')
588 break
588 break
589
589
590 self.flagIsNewFile = 1
590 self.flagIsNewFile = 1
591 self.fileIndex = idFile
591 self.fileIndex = idFile
592 self.filename = filename
592 self.filename = filename
593 self.fileSize = fileSize
593 self.fileSize = fileSize
594 self.fp = fp
594 self.fp = fp
595
595
596 print "Setting the file: %s"%self.filename
596 print "Setting the file: %s"%self.filename
597
597
598 return 1
598 return 1
599
599
600 def __setNextFileOnline(self):
600 def __setNextFileOnline(self):
601 """
601 """
602 Busca el siguiente file que tenga suficiente data para ser leida, dentro de un folder especifico, si
602 Busca el siguiente file que tenga suficiente data para ser leida, dentro de un folder especifico, si
603 no encuentra un file valido espera un tiempo determinado y luego busca en los posibles n files
603 no encuentra un file valido espera un tiempo determinado y luego busca en los posibles n files
604 siguientes.
604 siguientes.
605
605
606 Affected:
606 Affected:
607 self.flagIsNewFile
607 self.flagIsNewFile
608 self.filename
608 self.filename
609 self.fileSize
609 self.fileSize
610 self.fp
610 self.fp
611 self.set
611 self.set
612 self.flagNoMoreFiles
612 self.flagNoMoreFiles
613
613
614 Return:
614 Return:
615 0 : si luego de una busqueda del siguiente file valido este no pudo ser encontrado
615 0 : si luego de una busqueda del siguiente file valido este no pudo ser encontrado
616 1 : si el file fue abierto con exito y esta listo a ser leido
616 1 : si el file fue abierto con exito y esta listo a ser leido
617
617
618 Excepciones:
618 Excepciones:
619 Si un determinado file no puede ser abierto
619 Si un determinado file no puede ser abierto
620 """
620 """
621 nFiles = 0
621 nFiles = 0
622 fileOk_flag = False
622 fileOk_flag = False
623 firstTime_flag = True
623 firstTime_flag = True
624
624
625 self.set += 1
625 self.set += 1
626
626
627 if self.set > 999:
627 if self.set > 999:
628 self.set = 0
628 self.set = 0
629 self.foldercounter += 1
629 self.foldercounter += 1
630
630
631 #busca el 1er file disponible
631 #busca el 1er file disponible
632 fullfilename, filename = checkForRealPath( self.path, self.foldercounter, self.year, self.doy, self.set, self.ext )
632 fullfilename, filename = checkForRealPath( self.path, self.foldercounter, self.year, self.doy, self.set, self.ext )
633 if fullfilename:
633 if fullfilename:
634 if self.__verifyFile(fullfilename, False):
634 if self.__verifyFile(fullfilename, False):
635 fileOk_flag = True
635 fileOk_flag = True
636
636
637 #si no encuentra un file entonces espera y vuelve a buscar
637 #si no encuentra un file entonces espera y vuelve a buscar
638 if not(fileOk_flag):
638 if not(fileOk_flag):
639 for nFiles in range(self.nFiles+1): #busco en los siguientes self.nFiles+1 files posibles
639 for nFiles in range(self.nFiles+1): #busco en los siguientes self.nFiles+1 files posibles
640
640
641 if firstTime_flag: #si es la 1era vez entonces hace el for self.nTries veces
641 if firstTime_flag: #si es la 1era vez entonces hace el for self.nTries veces
642 tries = self.nTries
642 tries = self.nTries
643 else:
643 else:
644 tries = 1 #si no es la 1era vez entonces solo lo hace una vez
644 tries = 1 #si no es la 1era vez entonces solo lo hace una vez
645
645
646 for nTries in range( tries ):
646 for nTries in range( tries ):
647 if firstTime_flag:
647 if firstTime_flag:
648 print "\tWaiting %0.2f sec for the file \"%s\" , try %03d ..." % ( self.delay, filename, nTries+1 )
648 print "\tWaiting %0.2f sec for the file \"%s\" , try %03d ..." % ( self.delay, filename, nTries+1 )
649 time.sleep( self.delay )
649 time.sleep( self.delay )
650 else:
650 else:
651 print "\tSearching next \"%s%04d%03d%03d%s\" file ..." % (self.optchar, self.year, self.doy, self.set, self.ext)
651 print "\tSearching next \"%s%04d%03d%03d%s\" file ..." % (self.optchar, self.year, self.doy, self.set, self.ext)
652
652
653 fullfilename, filename = checkForRealPath( self.path, self.foldercounter, self.year, self.doy, self.set, self.ext )
653 fullfilename, filename = checkForRealPath( self.path, self.foldercounter, self.year, self.doy, self.set, self.ext )
654 if fullfilename:
654 if fullfilename:
655 if self.__verifyFile(fullfilename):
655 if self.__verifyFile(fullfilename):
656 fileOk_flag = True
656 fileOk_flag = True
657 break
657 break
658
658
659 if fileOk_flag:
659 if fileOk_flag:
660 break
660 break
661
661
662 firstTime_flag = False
662 firstTime_flag = False
663
663
664 print "\tSkipping the file \"%s\" due to this file doesn't exist" % filename
664 print "\tSkipping the file \"%s\" due to this file doesn't exist" % filename
665 self.set += 1
665 self.set += 1
666
666
667 if nFiles == (self.nFiles-1): #si no encuentro el file buscado cambio de carpeta y busco en la siguiente carpeta
667 if nFiles == (self.nFiles-1): #si no encuentro el file buscado cambio de carpeta y busco en la siguiente carpeta
668 self.set = 0
668 self.set = 0
669 self.doy += 1
669 self.doy += 1
670 self.foldercounter = 0
670 self.foldercounter = 0
671
671
672 if fileOk_flag:
672 if fileOk_flag:
673 self.fileSize = os.path.getsize( fullfilename )
673 self.fileSize = os.path.getsize( fullfilename )
674 self.filename = fullfilename
674 self.filename = fullfilename
675 self.flagIsNewFile = 1
675 self.flagIsNewFile = 1
676 if self.fp != None: self.fp.close()
676 if self.fp != None: self.fp.close()
677 self.fp = open(fullfilename, 'rb')
677 self.fp = open(fullfilename, 'rb')
678 self.flagNoMoreFiles = 0
678 self.flagNoMoreFiles = 0
679 print 'Setting the file: %s' % fullfilename
679 print 'Setting the file: %s' % fullfilename
680 else:
680 else:
681 self.fileSize = 0
681 self.fileSize = 0
682 self.filename = None
682 self.filename = None
683 self.flagIsNewFile = 0
683 self.flagIsNewFile = 0
684 self.fp = None
684 self.fp = None
685 self.flagNoMoreFiles = 1
685 self.flagNoMoreFiles = 1
686 print 'No more Files'
686 print 'No more Files'
687
687
688 return fileOk_flag
688 return fileOk_flag
689
689
690
690
691 def setNextFile(self):
691 def setNextFile(self):
692 if self.fp != None:
692 if self.fp != None:
693 self.fp.close()
693 self.fp.close()
694
694
695 if self.online:
695 if self.online:
696 newFile = self.__setNextFileOnline()
696 newFile = self.__setNextFileOnline()
697 else:
697 else:
698 newFile = self.__setNextFileOffline()
698 newFile = self.__setNextFileOffline()
699
699
700 if not(newFile):
700 if not(newFile):
701 return 0
701 return 0
702
702
703 self.__readFirstHeader()
703 self.__readFirstHeader()
704 self.nReadBlocks = 0
704 self.nReadBlocks = 0
705 return 1
705 return 1
706
706
707 def __waitNewBlock(self):
707 def __waitNewBlock(self):
708 """
708 """
709 Return 1 si se encontro un nuevo bloque de datos, 0 de otra forma.
709 Return 1 si se encontro un nuevo bloque de datos, 0 de otra forma.
710
710
711 Si el modo de lectura es OffLine siempre retorn 0
711 Si el modo de lectura es OffLine siempre retorn 0
712 """
712 """
713 if not self.online:
713 if not self.online:
714 return 0
714 return 0
715
715
716 if (self.nReadBlocks >= self.processingHeaderObj.dataBlocksPerFile):
716 if (self.nReadBlocks >= self.processingHeaderObj.dataBlocksPerFile):
717 return 0
717 return 0
718
718
719 currentPointer = self.fp.tell()
719 currentPointer = self.fp.tell()
720
720
721 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
721 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
722
722
723 for nTries in range( self.nTries ):
723 for nTries in range( self.nTries ):
724
724
725 self.fp.close()
725 self.fp.close()
726 self.fp = open( self.filename, 'rb' )
726 self.fp = open( self.filename, 'rb' )
727 self.fp.seek( currentPointer )
727 self.fp.seek( currentPointer )
728
728
729 self.fileSize = os.path.getsize( self.filename )
729 self.fileSize = os.path.getsize( self.filename )
730 currentSize = self.fileSize - currentPointer
730 currentSize = self.fileSize - currentPointer
731
731
732 if ( currentSize >= neededSize ):
732 if ( currentSize >= neededSize ):
733 self.__rdBasicHeader()
733 self.__rdBasicHeader()
734 return 1
734 return 1
735
735
736 if self.fileSize == self.fileSizeByHeader:
736 if self.fileSize == self.fileSizeByHeader:
737 # self.flagEoF = True
737 # self.flagEoF = True
738 return 0
738 return 0
739
739
740 print "\tWaiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
740 print "\tWaiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
741 time.sleep( self.delay )
741 time.sleep( self.delay )
742
742
743
743
744 return 0
744 return 0
745
745
746 def waitDataBlock(self,pointer_location):
746 def waitDataBlock(self,pointer_location):
747
747
748 currentPointer = pointer_location
748 currentPointer = pointer_location
749
749
750 neededSize = self.processingHeaderObj.blockSize #+ self.basicHeaderSize
750 neededSize = self.processingHeaderObj.blockSize #+ self.basicHeaderSize
751
751
752 for nTries in range( self.nTries ):
752 for nTries in range( self.nTries ):
753 self.fp.close()
753 self.fp.close()
754 self.fp = open( self.filename, 'rb' )
754 self.fp = open( self.filename, 'rb' )
755 self.fp.seek( currentPointer )
755 self.fp.seek( currentPointer )
756
756
757 self.fileSize = os.path.getsize( self.filename )
757 self.fileSize = os.path.getsize( self.filename )
758 currentSize = self.fileSize - currentPointer
758 currentSize = self.fileSize - currentPointer
759
759
760 if ( currentSize >= neededSize ):
760 if ( currentSize >= neededSize ):
761 return 1
761 return 1
762
762
763 print "\tWaiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
763 print "\tWaiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
764 time.sleep( self.delay )
764 time.sleep( self.delay )
765
765
766 return 0
766 return 0
767
767
768
768
769 def __jumpToLastBlock(self):
769 def __jumpToLastBlock(self):
770
770
771 if not(self.__isFirstTimeOnline):
771 if not(self.__isFirstTimeOnline):
772 return
772 return
773
773
774 csize = self.fileSize - self.fp.tell()
774 csize = self.fileSize - self.fp.tell()
775 blocksize = self.processingHeaderObj.blockSize
775 blocksize = self.processingHeaderObj.blockSize
776
776
777 #salta el primer bloque de datos
777 #salta el primer bloque de datos
778 if csize > self.processingHeaderObj.blockSize:
778 if csize > self.processingHeaderObj.blockSize:
779 self.fp.seek(self.fp.tell() + blocksize)
779 self.fp.seek(self.fp.tell() + blocksize)
780 else:
780 else:
781 return
781 return
782
782
783 csize = self.fileSize - self.fp.tell()
783 csize = self.fileSize - self.fp.tell()
784 neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize
784 neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize
785 while True:
785 while True:
786
786
787 if self.fp.tell()<self.fileSize:
787 if self.fp.tell()<self.fileSize:
788 self.fp.seek(self.fp.tell() + neededsize)
788 self.fp.seek(self.fp.tell() + neededsize)
789 else:
789 else:
790 self.fp.seek(self.fp.tell() - neededsize)
790 self.fp.seek(self.fp.tell() - neededsize)
791 break
791 break
792
792
793 # csize = self.fileSize - self.fp.tell()
793 # csize = self.fileSize - self.fp.tell()
794 # neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize
794 # neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize
795 # factor = int(csize/neededsize)
795 # factor = int(csize/neededsize)
796 # if factor > 0:
796 # if factor > 0:
797 # self.fp.seek(self.fp.tell() + factor*neededsize)
797 # self.fp.seek(self.fp.tell() + factor*neededsize)
798
798
799 self.flagIsNewFile = 0
799 self.flagIsNewFile = 0
800 self.__isFirstTimeOnline = 0
800 self.__isFirstTimeOnline = 0
801
801
802
802
803 def __setNewBlock(self):
803 def __setNewBlock(self):
804
804
805 if self.fp == None:
805 if self.fp == None:
806 return 0
806 return 0
807
807
808 if self.online:
808 if self.online:
809 self.__jumpToLastBlock()
809 self.__jumpToLastBlock()
810
810
811 if self.flagIsNewFile:
811 if self.flagIsNewFile:
812 return 1
812 return 1
813
813
814 self.lastUTTime = self.basicHeaderObj.utc
814 self.lastUTTime = self.basicHeaderObj.utc
815 currentSize = self.fileSize - self.fp.tell()
815 currentSize = self.fileSize - self.fp.tell()
816 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
816 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
817
817
818 if (currentSize >= neededSize):
818 if (currentSize >= neededSize):
819 self.__rdBasicHeader()
819 self.__rdBasicHeader()
820 return 1
820 return 1
821
821
822 if self.__waitNewBlock():
822 if self.__waitNewBlock():
823 return 1
823 return 1
824
824
825 if not(self.setNextFile()):
825 if not(self.setNextFile()):
826 return 0
826 return 0
827
827
828 deltaTime = self.basicHeaderObj.utc - self.lastUTTime #
828 deltaTime = self.basicHeaderObj.utc - self.lastUTTime #
829
829
830 self.flagTimeBlock = 0
830 self.flagTimeBlock = 0
831
831
832 if deltaTime > self.maxTimeStep:
832 if deltaTime > self.maxTimeStep:
833 self.flagTimeBlock = 1
833 self.flagTimeBlock = 1
834
834
835 return 1
835 return 1
836
836
837
837
838 def readNextBlock(self):
838 def readNextBlock(self):
839 if not(self.__setNewBlock()):
839 if not(self.__setNewBlock()):
840 return 0
840 return 0
841
841
842 if not(self.readBlock()):
842 if not(self.readBlock()):
843 return 0
843 return 0
844
844
845 return 1
845 return 1
846
846
847 def __rdProcessingHeader(self, fp=None):
847 def __rdProcessingHeader(self, fp=None):
848 if fp == None:
848 if fp == None:
849 fp = self.fp
849 fp = self.fp
850
850
851 self.processingHeaderObj.read(fp)
851 self.processingHeaderObj.read(fp)
852
852
853 def __rdRadarControllerHeader(self, fp=None):
853 def __rdRadarControllerHeader(self, fp=None):
854 if fp == None:
854 if fp == None:
855 fp = self.fp
855 fp = self.fp
856
856
857 self.radarControllerHeaderObj.read(fp)
857 self.radarControllerHeaderObj.read(fp)
858
858
859 def __rdSystemHeader(self, fp=None):
859 def __rdSystemHeader(self, fp=None):
860 if fp == None:
860 if fp == None:
861 fp = self.fp
861 fp = self.fp
862
862
863 self.systemHeaderObj.read(fp)
863 self.systemHeaderObj.read(fp)
864
864
865 def __rdBasicHeader(self, fp=None):
865 def __rdBasicHeader(self, fp=None):
866 if fp == None:
866 if fp == None:
867 fp = self.fp
867 fp = self.fp
868
868
869 self.basicHeaderObj.read(fp)
869 self.basicHeaderObj.read(fp)
870
870
871
871
872 def __readFirstHeader(self):
872 def __readFirstHeader(self):
873 self.__rdBasicHeader()
873 self.__rdBasicHeader()
874 self.__rdSystemHeader()
874 self.__rdSystemHeader()
875 self.__rdRadarControllerHeader()
875 self.__rdRadarControllerHeader()
876 self.__rdProcessingHeader()
876 self.__rdProcessingHeader()
877
877
878 self.firstHeaderSize = self.basicHeaderObj.size
878 self.firstHeaderSize = self.basicHeaderObj.size
879
879
880 datatype = int(numpy.log2((self.processingHeaderObj.processFlags & PROCFLAG.DATATYPE_MASK))-numpy.log2(PROCFLAG.DATATYPE_CHAR))
880 datatype = int(numpy.log2((self.processingHeaderObj.processFlags & PROCFLAG.DATATYPE_MASK))-numpy.log2(PROCFLAG.DATATYPE_CHAR))
881 if datatype == 0:
881 if datatype == 0:
882 datatype_str = numpy.dtype([('real','<i1'),('imag','<i1')])
882 datatype_str = numpy.dtype([('real','<i1'),('imag','<i1')])
883 elif datatype == 1:
883 elif datatype == 1:
884 datatype_str = numpy.dtype([('real','<i2'),('imag','<i2')])
884 datatype_str = numpy.dtype([('real','<i2'),('imag','<i2')])
885 elif datatype == 2:
885 elif datatype == 2:
886 datatype_str = numpy.dtype([('real','<i4'),('imag','<i4')])
886 datatype_str = numpy.dtype([('real','<i4'),('imag','<i4')])
887 elif datatype == 3:
887 elif datatype == 3:
888 datatype_str = numpy.dtype([('real','<i8'),('imag','<i8')])
888 datatype_str = numpy.dtype([('real','<i8'),('imag','<i8')])
889 elif datatype == 4:
889 elif datatype == 4:
890 datatype_str = numpy.dtype([('real','<f4'),('imag','<f4')])
890 datatype_str = numpy.dtype([('real','<f4'),('imag','<f4')])
891 elif datatype == 5:
891 elif datatype == 5:
892 datatype_str = numpy.dtype([('real','<f8'),('imag','<f8')])
892 datatype_str = numpy.dtype([('real','<f8'),('imag','<f8')])
893 else:
893 else:
894 raise ValueError, 'Data type was not defined'
894 raise ValueError, 'Data type was not defined'
895
895
896 self.dtype = datatype_str
896 self.dtype = datatype_str
897 self.ippSeconds = 2 * 1000 * self.radarControllerHeaderObj.ipp / self.c
897 self.ippSeconds = 2 * 1000 * self.radarControllerHeaderObj.ipp / self.c
898 self.fileSizeByHeader = self.processingHeaderObj.dataBlocksPerFile * self.processingHeaderObj.blockSize + self.firstHeaderSize + self.basicHeaderSize*(self.processingHeaderObj.dataBlocksPerFile - 1)
898 self.fileSizeByHeader = self.processingHeaderObj.dataBlocksPerFile * self.processingHeaderObj.blockSize + self.firstHeaderSize + self.basicHeaderSize*(self.processingHeaderObj.dataBlocksPerFile - 1)
899 # self.dataOut.channelList = numpy.arange(self.systemHeaderObj.numChannels)
899 # self.dataOut.channelList = numpy.arange(self.systemHeaderObj.numChannels)
900 # self.dataOut.channelIndexList = numpy.arange(self.systemHeaderObj.numChannels)
900 # self.dataOut.channelIndexList = numpy.arange(self.systemHeaderObj.numChannels)
901 self.getBlockDimension()
901 self.getBlockDimension()
902
902
903
903
904 def __verifyFile(self, filename, msgFlag=True):
904 def __verifyFile(self, filename, msgFlag=True):
905 msg = None
905 msg = None
906 try:
906 try:
907 fp = open(filename, 'rb')
907 fp = open(filename, 'rb')
908 currentPosition = fp.tell()
908 currentPosition = fp.tell()
909 except:
909 except:
910 if msgFlag:
910 if msgFlag:
911 print "The file %s can't be opened" % (filename)
911 print "The file %s can't be opened" % (filename)
912 return False
912 return False
913
913
914 neededSize = self.processingHeaderObj.blockSize + self.firstHeaderSize
914 neededSize = self.processingHeaderObj.blockSize + self.firstHeaderSize
915
915
916 if neededSize == 0:
916 if neededSize == 0:
917 basicHeaderObj = BasicHeader(LOCALTIME)
917 basicHeaderObj = BasicHeader(LOCALTIME)
918 systemHeaderObj = SystemHeader()
918 systemHeaderObj = SystemHeader()
919 radarControllerHeaderObj = RadarControllerHeader()
919 radarControllerHeaderObj = RadarControllerHeader()
920 processingHeaderObj = ProcessingHeader()
920 processingHeaderObj = ProcessingHeader()
921
921
922 try:
922 try:
923 if not( basicHeaderObj.read(fp) ): raise IOError
923 if not( basicHeaderObj.read(fp) ): raise IOError
924 if not( systemHeaderObj.read(fp) ): raise IOError
924 if not( systemHeaderObj.read(fp) ): raise IOError
925 if not( radarControllerHeaderObj.read(fp) ): raise IOError
925 if not( radarControllerHeaderObj.read(fp) ): raise IOError
926 if not( processingHeaderObj.read(fp) ): raise IOError
926 if not( processingHeaderObj.read(fp) ): raise IOError
927 data_type = int(numpy.log2((processingHeaderObj.processFlags & PROCFLAG.DATATYPE_MASK))-numpy.log2(PROCFLAG.DATATYPE_CHAR))
927 data_type = int(numpy.log2((processingHeaderObj.processFlags & PROCFLAG.DATATYPE_MASK))-numpy.log2(PROCFLAG.DATATYPE_CHAR))
928
928
929 neededSize = processingHeaderObj.blockSize + basicHeaderObj.size
929 neededSize = processingHeaderObj.blockSize + basicHeaderObj.size
930
930
931 except:
931 except:
932 if msgFlag:
932 if msgFlag:
933 print "\tThe file %s is empty or it hasn't enough data" % filename
933 print "\tThe file %s is empty or it hasn't enough data" % filename
934
934
935 fp.close()
935 fp.close()
936 return False
936 return False
937 else:
937 else:
938 msg = "\tSkipping the file %s due to it hasn't enough data" %filename
938 msg = "\tSkipping the file %s due to it hasn't enough data" %filename
939
939
940 fp.close()
940 fp.close()
941 fileSize = os.path.getsize(filename)
941 fileSize = os.path.getsize(filename)
942 currentSize = fileSize - currentPosition
942 currentSize = fileSize - currentPosition
943 if currentSize < neededSize:
943 if currentSize < neededSize:
944 if msgFlag and (msg != None):
944 if msgFlag and (msg != None):
945 print msg #print"\tSkipping the file %s due to it hasn't enough data" %filename
945 print msg #print"\tSkipping the file %s due to it hasn't enough data" %filename
946 return False
946 return False
947
947
948 return True
948 return True
949
949
950 def setup(self,
950 def setup(self,
951 path=None,
951 path=None,
952 startDate=None,
952 startDate=None,
953 endDate=None,
953 endDate=None,
954 startTime=datetime.time(0,0,0),
954 startTime=datetime.time(0,0,0),
955 endTime=datetime.time(23,59,59),
955 endTime=datetime.time(23,59,59),
956 set=None,
956 set=None,
957 expLabel = "",
957 expLabel = "",
958 ext = None,
958 ext = None,
959 online = False,
959 online = False,
960 delay = 60,
960 delay = 60,
961 walk = True):
961 walk = True):
962
962
963 if path == None:
963 if path == None:
964 raise ValueError, "The path is not valid"
964 raise ValueError, "The path is not valid"
965
965
966 if ext == None:
966 if ext == None:
967 ext = self.ext
967 ext = self.ext
968
968
969 if online:
969 if online:
970 print "Searching files in online mode..."
970 print "Searching files in online mode..."
971
971
972 for nTries in range( self.nTries ):
972 for nTries in range( self.nTries ):
973 fullpath, foldercounter, file, year, doy, set = self.__searchFilesOnLine(path=path, expLabel=expLabel, ext=ext, walk=walk, set=set)
973 fullpath, foldercounter, file, year, doy, set = self.__searchFilesOnLine(path=path, expLabel=expLabel, ext=ext, walk=walk, set=set)
974
974
975 if fullpath:
975 if fullpath:
976 break
976 break
977
977
978 print '\tWaiting %0.2f sec for an valid file in %s: try %02d ...' % (self.delay, path, nTries+1)
978 print '\tWaiting %0.2f sec for an valid file in %s: try %02d ...' % (self.delay, path, nTries+1)
979 time.sleep( self.delay )
979 time.sleep( self.delay )
980
980
981 if not(fullpath):
981 if not(fullpath):
982 print "There 'isn't valied files in %s" % path
982 print "There 'isn't valied files in %s" % path
983 return None
983 return None
984
984
985 self.year = year
985 self.year = year
986 self.doy = doy
986 self.doy = doy
987 self.set = set - 1
987 self.set = set - 1
988 self.path = path
988 self.path = path
989 self.foldercounter = foldercounter
989 self.foldercounter = foldercounter
990 last_set = None
990 last_set = None
991
991
992 else:
992 else:
993 print "Searching files in offline mode ..."
993 print "Searching files in offline mode ..."
994 pathList, filenameList = self.__searchFilesOffLine(path, startDate=startDate, endDate=endDate,
994 pathList, filenameList = self.__searchFilesOffLine(path, startDate=startDate, endDate=endDate,
995 startTime=startTime, endTime=endTime,
995 startTime=startTime, endTime=endTime,
996 set=set, expLabel=expLabel, ext=ext,
996 set=set, expLabel=expLabel, ext=ext,
997 walk=walk)
997 walk=walk)
998
998
999 if not(pathList):
999 if not(pathList):
1000 print "No *%s files into the folder %s \nfor the range: %s - %s"%(ext, path,
1000 print "No *%s files into the folder %s \nfor the range: %s - %s"%(ext, path,
1001 datetime.datetime.combine(startDate,startTime).ctime(),
1001 datetime.datetime.combine(startDate,startTime).ctime(),
1002 datetime.datetime.combine(endDate,endTime).ctime())
1002 datetime.datetime.combine(endDate,endTime).ctime())
1003
1003
1004 sys.exit(-1)
1004 sys.exit(-1)
1005
1005
1006
1006
1007 self.fileIndex = -1
1007 self.fileIndex = -1
1008 self.pathList = pathList
1008 self.pathList = pathList
1009 self.filenameList = filenameList
1009 self.filenameList = filenameList
1010 file_name = os.path.basename(filenameList[-1])
1010 file_name = os.path.basename(filenameList[-1])
1011 basename, ext = os.path.splitext(file_name)
1011 basename, ext = os.path.splitext(file_name)
1012 last_set = int(basename[-3:])
1012 last_set = int(basename[-3:])
1013
1013
1014 self.online = online
1014 self.online = online
1015 self.delay = delay
1015 self.delay = delay
1016 ext = ext.lower()
1016 ext = ext.lower()
1017 self.ext = ext
1017 self.ext = ext
1018
1018
1019 if not(self.setNextFile()):
1019 if not(self.setNextFile()):
1020 if (startDate!=None) and (endDate!=None):
1020 if (startDate!=None) and (endDate!=None):
1021 print "No files in range: %s - %s" %(datetime.datetime.combine(startDate,startTime).ctime(), datetime.datetime.combine(endDate,endTime).ctime())
1021 print "No files in range: %s - %s" %(datetime.datetime.combine(startDate,startTime).ctime(), datetime.datetime.combine(endDate,endTime).ctime())
1022 elif startDate != None:
1022 elif startDate != None:
1023 print "No files in range: %s" %(datetime.datetime.combine(startDate,startTime).ctime())
1023 print "No files in range: %s" %(datetime.datetime.combine(startDate,startTime).ctime())
1024 else:
1024 else:
1025 print "No files"
1025 print "No files"
1026
1026
1027 sys.exit(-1)
1027 sys.exit(-1)
1028
1028
1029 # self.updateDataHeader()
1029 # self.updateDataHeader()
1030 if last_set != None:
1030 if last_set != None:
1031 self.dataOut.last_block = last_set * self.processingHeaderObj.dataBlocksPerFile + self.basicHeaderObj.dataBlock
1031 self.dataOut.last_block = last_set * self.processingHeaderObj.dataBlocksPerFile + self.basicHeaderObj.dataBlock
1032 return self.dataOut
1032 return self.dataOut
1033
1033
1034 def getBasicHeader(self):
1034 def getBasicHeader(self):
1035
1035
1036 self.dataOut.utctime = self.basicHeaderObj.utc + self.basicHeaderObj.miliSecond/1000. + self.profileIndex * self.ippSeconds
1036 self.dataOut.utctime = self.basicHeaderObj.utc + self.basicHeaderObj.miliSecond/1000. + self.profileIndex * self.ippSeconds
1037
1037
1038 self.dataOut.flagTimeBlock = self.flagTimeBlock
1038 self.dataOut.flagTimeBlock = self.flagTimeBlock
1039
1039
1040 self.dataOut.timeZone = self.basicHeaderObj.timeZone
1040 self.dataOut.timeZone = self.basicHeaderObj.timeZone
1041
1041
1042 self.dataOut.dstFlag = self.basicHeaderObj.dstFlag
1042 self.dataOut.dstFlag = self.basicHeaderObj.dstFlag
1043
1043
1044 self.dataOut.errorCount = self.basicHeaderObj.errorCount
1044 self.dataOut.errorCount = self.basicHeaderObj.errorCount
1045
1045
1046 self.dataOut.useLocalTime = self.basicHeaderObj.useLocalTime
1046 self.dataOut.useLocalTime = self.basicHeaderObj.useLocalTime
1047
1047
1048 def getFirstHeader(self):
1048 def getFirstHeader(self):
1049
1049
1050 raise ValueError, "This method has not been implemented"
1050 raise ValueError, "This method has not been implemented"
1051
1051
1052 def getData():
1052 def getData():
1053
1053
1054 raise ValueError, "This method has not been implemented"
1054 raise ValueError, "This method has not been implemented"
1055
1055
1056 def hasNotDataInBuffer():
1056 def hasNotDataInBuffer():
1057
1057
1058 raise ValueError, "This method has not been implemented"
1058 raise ValueError, "This method has not been implemented"
1059
1059
1060 def readBlock():
1060 def readBlock():
1061
1061
1062 raise ValueError, "This method has not been implemented"
1062 raise ValueError, "This method has not been implemented"
1063
1063
1064 def isEndProcess(self):
1064 def isEndProcess(self):
1065
1065
1066 return self.flagNoMoreFiles
1066 return self.flagNoMoreFiles
1067
1067
1068 def printReadBlocks(self):
1068 def printReadBlocks(self):
1069
1069
1070 print "Number of read blocks per file %04d" %self.nReadBlocks
1070 print "Number of read blocks per file %04d" %self.nReadBlocks
1071
1071
1072 def printTotalBlocks(self):
1072 def printTotalBlocks(self):
1073
1073
1074 print "Number of read blocks %04d" %self.nTotalBlocks
1074 print "Number of read blocks %04d" %self.nTotalBlocks
1075
1075
1076 def printNumberOfBlock(self):
1076 def printNumberOfBlock(self):
1077
1077
1078 if self.flagIsNewBlock:
1078 if self.flagIsNewBlock:
1079 print "Block No. %04d, Total blocks %04d -> %s" %(self.basicHeaderObj.dataBlock, self.nTotalBlocks, self.dataOut.datatime.ctime())
1079 print "Block No. %04d, Total blocks %04d -> %s" %(self.basicHeaderObj.dataBlock, self.nTotalBlocks, self.dataOut.datatime.ctime())
1080 self.dataOut.blocknow = self.basicHeaderObj.dataBlock
1080 self.dataOut.blocknow = self.basicHeaderObj.dataBlock
1081 def printInfo(self):
1081 def printInfo(self):
1082
1082
1083 if self.__printInfo == False:
1083 if self.__printInfo == False:
1084 return
1084 return
1085
1085
1086 self.basicHeaderObj.printInfo()
1086 self.basicHeaderObj.printInfo()
1087 self.systemHeaderObj.printInfo()
1087 self.systemHeaderObj.printInfo()
1088 self.radarControllerHeaderObj.printInfo()
1088 self.radarControllerHeaderObj.printInfo()
1089 self.processingHeaderObj.printInfo()
1089 self.processingHeaderObj.printInfo()
1090
1090
1091 self.__printInfo = False
1091 self.__printInfo = False
1092
1092
1093
1093
1094 def run(self, **kwargs):
1094 def run(self, **kwargs):
1095
1095
1096 if not(self.isConfig):
1096 if not(self.isConfig):
1097
1097
1098 # self.dataOut = dataOut
1098 # self.dataOut = dataOut
1099 self.setup(**kwargs)
1099 self.setup(**kwargs)
1100 self.isConfig = True
1100 self.isConfig = True
1101
1101
1102 self.getData()
1102 self.getData()
1103
1103
1104 class JRODataWriter(JRODataIO, Operation):
1104 class JRODataWriter(JRODataIO, Operation):
1105
1105
1106 """
1106 """
1107 Esta clase permite escribir datos a archivos procesados (.r o ,pdata). La escritura
1107 Esta clase permite escribir datos a archivos procesados (.r o ,pdata). La escritura
1108 de los datos siempre se realiza por bloques.
1108 de los datos siempre se realiza por bloques.
1109 """
1109 """
1110
1110
1111 blockIndex = 0
1111 blockIndex = 0
1112
1112
1113 path = None
1113 path = None
1114
1114
1115 setFile = None
1115 setFile = None
1116
1116
1117 profilesPerBlock = None
1117 profilesPerBlock = None
1118
1118
1119 blocksPerFile = None
1119 blocksPerFile = None
1120
1120
1121 nWriteBlocks = 0
1121 nWriteBlocks = 0
1122
1122
1123 def __init__(self, dataOut=None):
1123 def __init__(self, dataOut=None):
1124 raise ValueError, "Not implemented"
1124 raise ValueError, "Not implemented"
1125
1125
1126
1126
1127 def hasAllDataInBuffer(self):
1127 def hasAllDataInBuffer(self):
1128 raise ValueError, "Not implemented"
1128 raise ValueError, "Not implemented"
1129
1129
1130
1130
1131 def setBlockDimension(self):
1131 def setBlockDimension(self):
1132 raise ValueError, "Not implemented"
1132 raise ValueError, "Not implemented"
1133
1133
1134
1134
1135 def writeBlock(self):
1135 def writeBlock(self):
1136 raise ValueError, "No implemented"
1136 raise ValueError, "No implemented"
1137
1137
1138
1138
1139 def putData(self):
1139 def putData(self):
1140 raise ValueError, "No implemented"
1140 raise ValueError, "No implemented"
1141
1141
1142
1142
1143 def setBasicHeader(self):
1143 def setBasicHeader(self):
1144
1144
1145 self.basicHeaderObj.size = self.basicHeaderSize #bytes
1145 self.basicHeaderObj.size = self.basicHeaderSize #bytes
1146 self.basicHeaderObj.version = self.versionFile
1146 self.basicHeaderObj.version = self.versionFile
1147 self.basicHeaderObj.dataBlock = self.nTotalBlocks
1147 self.basicHeaderObj.dataBlock = self.nTotalBlocks
1148
1148
1149 utc = numpy.floor(self.dataOut.utctime)
1149 utc = numpy.floor(self.dataOut.utctime)
1150 milisecond = (self.dataOut.utctime - utc)* 1000.0
1150 milisecond = (self.dataOut.utctime - utc)* 1000.0
1151
1151
1152 self.basicHeaderObj.utc = utc
1152 self.basicHeaderObj.utc = utc
1153 self.basicHeaderObj.miliSecond = milisecond
1153 self.basicHeaderObj.miliSecond = milisecond
1154 self.basicHeaderObj.timeZone = self.dataOut.timeZone
1154 self.basicHeaderObj.timeZone = self.dataOut.timeZone
1155 self.basicHeaderObj.dstFlag = self.dataOut.dstFlag
1155 self.basicHeaderObj.dstFlag = self.dataOut.dstFlag
1156 self.basicHeaderObj.errorCount = self.dataOut.errorCount
1156 self.basicHeaderObj.errorCount = self.dataOut.errorCount
1157
1157
1158 def setFirstHeader(self):
1158 def setFirstHeader(self):
1159 """
1159 """
1160 Obtiene una copia del First Header
1160 Obtiene una copia del First Header
1161
1161
1162 Affected:
1162 Affected:
1163
1163
1164 self.basicHeaderObj
1164 self.basicHeaderObj
1165 self.systemHeaderObj
1165 self.systemHeaderObj
1166 self.radarControllerHeaderObj
1166 self.radarControllerHeaderObj
1167 self.processingHeaderObj self.
1167 self.processingHeaderObj self.
1168
1168
1169 Return:
1169 Return:
1170 None
1170 None
1171 """
1171 """
1172
1172
1173 raise ValueError, "No implemented"
1173 raise ValueError, "No implemented"
1174
1174
1175 def __writeFirstHeader(self):
1175 def __writeFirstHeader(self):
1176 """
1176 """
1177 Escribe el primer header del file es decir el Basic header y el Long header (SystemHeader, RadarControllerHeader, ProcessingHeader)
1177 Escribe el primer header del file es decir el Basic header y el Long header (SystemHeader, RadarControllerHeader, ProcessingHeader)
1178
1178
1179 Affected:
1179 Affected:
1180 __dataType
1180 __dataType
1181
1181
1182 Return:
1182 Return:
1183 None
1183 None
1184 """
1184 """
1185
1185
1186 # CALCULAR PARAMETROS
1186 # CALCULAR PARAMETROS
1187
1187
1188 sizeLongHeader = self.systemHeaderObj.size + self.radarControllerHeaderObj.size + self.processingHeaderObj.size
1188 sizeLongHeader = self.systemHeaderObj.size + self.radarControllerHeaderObj.size + self.processingHeaderObj.size
1189 self.basicHeaderObj.size = self.basicHeaderSize + sizeLongHeader
1189 self.basicHeaderObj.size = self.basicHeaderSize + sizeLongHeader
1190
1190
1191 self.basicHeaderObj.write(self.fp)
1191 self.basicHeaderObj.write(self.fp)
1192 self.systemHeaderObj.write(self.fp)
1192 self.systemHeaderObj.write(self.fp)
1193 self.radarControllerHeaderObj.write(self.fp)
1193 self.radarControllerHeaderObj.write(self.fp)
1194 self.processingHeaderObj.write(self.fp)
1194 self.processingHeaderObj.write(self.fp)
1195
1195
1196 self.dtype = self.dataOut.dtype
1196 self.dtype = self.dataOut.dtype
1197
1197
1198 def __setNewBlock(self):
1198 def __setNewBlock(self):
1199 """
1199 """
1200 Si es un nuevo file escribe el First Header caso contrario escribe solo el Basic Header
1200 Si es un nuevo file escribe el First Header caso contrario escribe solo el Basic Header
1201
1201
1202 Return:
1202 Return:
1203 0 : si no pudo escribir nada
1203 0 : si no pudo escribir nada
1204 1 : Si escribio el Basic el First Header
1204 1 : Si escribio el Basic el First Header
1205 """
1205 """
1206 if self.fp == None:
1206 if self.fp == None:
1207 self.setNextFile()
1207 self.setNextFile()
1208
1208
1209 if self.flagIsNewFile:
1209 if self.flagIsNewFile:
1210 return 1
1210 return 1
1211
1211
1212 if self.blockIndex < self.processingHeaderObj.dataBlocksPerFile:
1212 if self.blockIndex < self.processingHeaderObj.dataBlocksPerFile:
1213 self.basicHeaderObj.write(self.fp)
1213 self.basicHeaderObj.write(self.fp)
1214 return 1
1214 return 1
1215
1215
1216 if not( self.setNextFile() ):
1216 if not( self.setNextFile() ):
1217 return 0
1217 return 0
1218
1218
1219 return 1
1219 return 1
1220
1220
1221
1221
1222 def writeNextBlock(self):
1222 def writeNextBlock(self):
1223 """
1223 """
1224 Selecciona el bloque siguiente de datos y los escribe en un file
1224 Selecciona el bloque siguiente de datos y los escribe en un file
1225
1225
1226 Return:
1226 Return:
1227 0 : Si no hizo pudo escribir el bloque de datos
1227 0 : Si no hizo pudo escribir el bloque de datos
1228 1 : Si no pudo escribir el bloque de datos
1228 1 : Si no pudo escribir el bloque de datos
1229 """
1229 """
1230 if not( self.__setNewBlock() ):
1230 if not( self.__setNewBlock() ):
1231 return 0
1231 return 0
1232
1232
1233 self.writeBlock()
1233 self.writeBlock()
1234
1234
1235 return 1
1235 return 1
1236
1236
1237 def setNextFile(self):
1237 def setNextFile(self):
1238 """
1238 """
1239 Determina el siguiente file que sera escrito
1239 Determina el siguiente file que sera escrito
1240
1240
1241 Affected:
1241 Affected:
1242 self.filename
1242 self.filename
1243 self.subfolder
1243 self.subfolder
1244 self.fp
1244 self.fp
1245 self.setFile
1245 self.setFile
1246 self.flagIsNewFile
1246 self.flagIsNewFile
1247
1247
1248 Return:
1248 Return:
1249 0 : Si el archivo no puede ser escrito
1249 0 : Si el archivo no puede ser escrito
1250 1 : Si el archivo esta listo para ser escrito
1250 1 : Si el archivo esta listo para ser escrito
1251 """
1251 """
1252 ext = self.ext
1252 ext = self.ext
1253 path = self.path
1253 path = self.path
1254
1254
1255 if self.fp != None:
1255 if self.fp != None:
1256 self.fp.close()
1256 self.fp.close()
1257
1257
1258 timeTuple = time.localtime( self.dataOut.utctime)
1258 timeTuple = time.localtime( self.dataOut.utctime)
1259 subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday)
1259 subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday)
1260
1260
1261 fullpath = os.path.join( path, subfolder )
1261 fullpath = os.path.join( path, subfolder )
1262 if not( os.path.exists(fullpath) ):
1262 if not( os.path.exists(fullpath) ):
1263 os.mkdir(fullpath)
1263 os.mkdir(fullpath)
1264 self.setFile = -1 #inicializo mi contador de seteo
1264 self.setFile = -1 #inicializo mi contador de seteo
1265 else:
1265 else:
1266 filesList = os.listdir( fullpath )
1266 filesList = os.listdir( fullpath )
1267 if len( filesList ) > 0:
1267 if len( filesList ) > 0:
1268 filesList = sorted( filesList, key=str.lower )
1268 filesList = sorted( filesList, key=str.lower )
1269 filen = filesList[-1]
1269 filen = filesList[-1]
1270 # el filename debera tener el siguiente formato
1270 # el filename debera tener el siguiente formato
1271 # 0 1234 567 89A BCDE (hex)
1271 # 0 1234 567 89A BCDE (hex)
1272 # x YYYY DDD SSS .ext
1272 # x YYYY DDD SSS .ext
1273 if isNumber( filen[8:11] ):
1273 if isNumber( filen[8:11] ):
1274 self.setFile = int( filen[8:11] ) #inicializo mi contador de seteo al seteo del ultimo file
1274 self.setFile = int( filen[8:11] ) #inicializo mi contador de seteo al seteo del ultimo file
1275 else:
1275 else:
1276 self.setFile = -1
1276 self.setFile = -1
1277 else:
1277 else:
1278 self.setFile = -1 #inicializo mi contador de seteo
1278 self.setFile = -1 #inicializo mi contador de seteo
1279
1279
1280 setFile = self.setFile
1280 setFile = self.setFile
1281 setFile += 1
1281 setFile += 1
1282
1282
1283 file = '%s%4.4d%3.3d%3.3d%s' % (self.optchar,
1283 file = '%s%4.4d%3.3d%3.3d%s' % (self.optchar,
1284 timeTuple.tm_year,
1284 timeTuple.tm_year,
1285 timeTuple.tm_yday,
1285 timeTuple.tm_yday,
1286 setFile,
1286 setFile,
1287 ext )
1287 ext )
1288
1288
1289 filename = os.path.join( path, subfolder, file )
1289 filename = os.path.join( path, subfolder, file )
1290
1290
1291 fp = open( filename,'wb' )
1291 fp = open( filename,'wb' )
1292
1292
1293 self.blockIndex = 0
1293 self.blockIndex = 0
1294
1294
1295 #guardando atributos
1295 #guardando atributos
1296 self.filename = filename
1296 self.filename = filename
1297 self.subfolder = subfolder
1297 self.subfolder = subfolder
1298 self.fp = fp
1298 self.fp = fp
1299 self.setFile = setFile
1299 self.setFile = setFile
1300 self.flagIsNewFile = 1
1300 self.flagIsNewFile = 1
1301
1301
1302 self.setFirstHeader()
1302 self.setFirstHeader()
1303
1303
1304 print 'Writing the file: %s'%self.filename
1304 print 'Writing the file: %s'%self.filename
1305
1305
1306 self.__writeFirstHeader()
1306 self.__writeFirstHeader()
1307
1307
1308 return 1
1308 return 1
1309
1309
1310 def setup(self, dataOut, path, blocksPerFile, profilesPerBlock=64, set=0, ext=None):
1310 def setup(self, dataOut, path, blocksPerFile, profilesPerBlock=64, set=0, ext=None):
1311 """
1311 """
1312 Setea el tipo de formato en la cual sera guardada la data y escribe el First Header
1312 Setea el tipo de formato en la cual sera guardada la data y escribe el First Header
1313
1313
1314 Inputs:
1314 Inputs:
1315 path : el path destino en el cual se escribiran los files a crear
1315 path : el path destino en el cual se escribiran los files a crear
1316 format : formato en el cual sera salvado un file
1316 format : formato en el cual sera salvado un file
1317 set : el setebo del file
1317 set : el setebo del file
1318
1318
1319 Return:
1319 Return:
1320 0 : Si no realizo un buen seteo
1320 0 : Si no realizo un buen seteo
1321 1 : Si realizo un buen seteo
1321 1 : Si realizo un buen seteo
1322 """
1322 """
1323
1323
1324 if ext == None:
1324 if ext == None:
1325 ext = self.ext
1325 ext = self.ext
1326
1326
1327 ext = ext.lower()
1327 ext = ext.lower()
1328
1328
1329 self.ext = ext
1329 self.ext = ext
1330
1330
1331 self.path = path
1331 self.path = path
1332
1332
1333 self.setFile = set - 1
1333 self.setFile = set - 1
1334
1334
1335 self.blocksPerFile = blocksPerFile
1335 self.blocksPerFile = blocksPerFile
1336
1336
1337 self.profilesPerBlock = profilesPerBlock
1337 self.profilesPerBlock = profilesPerBlock
1338
1338
1339 self.dataOut = dataOut
1339 self.dataOut = dataOut
1340
1340
1341 if not(self.setNextFile()):
1341 if not(self.setNextFile()):
1342 print "There isn't a next file"
1342 print "There isn't a next file"
1343 return 0
1343 return 0
1344
1344
1345 self.setBlockDimension()
1345 self.setBlockDimension()
1346
1346
1347 return 1
1347 return 1
1348
1348
1349 def run(self, dataOut, **kwargs):
1349 def run(self, dataOut, **kwargs):
1350
1350
1351 if not(self.isConfig):
1351 if not(self.isConfig):
1352
1352
1353 self.setup(dataOut, **kwargs)
1353 self.setup(dataOut, **kwargs)
1354 self.isConfig = True
1354 self.isConfig = True
1355
1355
1356 self.putData()
1356 self.putData()
1357
1357
1358 class VoltageReader(JRODataReader):
1358 class VoltageReader(JRODataReader):
1359 """
1359 """
1360 Esta clase permite leer datos de voltage desde archivos en formato rawdata (.r). La lectura
1360 Esta clase permite leer datos de voltage desde archivos en formato rawdata (.r). La lectura
1361 de los datos siempre se realiza por bloques. Los datos leidos (array de 3 dimensiones:
1361 de los datos siempre se realiza por bloques. Los datos leidos (array de 3 dimensiones:
1362 perfiles*alturas*canales) son almacenados en la variable "buffer".
1362 perfiles*alturas*canales) son almacenados en la variable "buffer".
1363
1363
1364 perfiles * alturas * canales
1364 perfiles * alturas * canales
1365
1365
1366 Esta clase contiene instancias (objetos) de las clases BasicHeader, SystemHeader,
1366 Esta clase contiene instancias (objetos) de las clases BasicHeader, SystemHeader,
1367 RadarControllerHeader y Voltage. Los tres primeros se usan para almacenar informacion de la
1367 RadarControllerHeader y Voltage. Los tres primeros se usan para almacenar informacion de la
1368 cabecera de datos (metadata), y el cuarto (Voltage) para obtener y almacenar un perfil de
1368 cabecera de datos (metadata), y el cuarto (Voltage) para obtener y almacenar un perfil de
1369 datos desde el "buffer" cada vez que se ejecute el metodo "getData".
1369 datos desde el "buffer" cada vez que se ejecute el metodo "getData".
1370
1370
1371 Example:
1371 Example:
1372
1372
1373 dpath = "/home/myuser/data"
1373 dpath = "/home/myuser/data"
1374
1374
1375 startTime = datetime.datetime(2010,1,20,0,0,0,0,0,0)
1375 startTime = datetime.datetime(2010,1,20,0,0,0,0,0,0)
1376
1376
1377 endTime = datetime.datetime(2010,1,21,23,59,59,0,0,0)
1377 endTime = datetime.datetime(2010,1,21,23,59,59,0,0,0)
1378
1378
1379 readerObj = VoltageReader()
1379 readerObj = VoltageReader()
1380
1380
1381 readerObj.setup(dpath, startTime, endTime)
1381 readerObj.setup(dpath, startTime, endTime)
1382
1382
1383 while(True):
1383 while(True):
1384
1384
1385 #to get one profile
1385 #to get one profile
1386 profile = readerObj.getData()
1386 profile = readerObj.getData()
1387
1387
1388 #print the profile
1388 #print the profile
1389 print profile
1389 print profile
1390
1390
1391 #If you want to see all datablock
1391 #If you want to see all datablock
1392 print readerObj.datablock
1392 print readerObj.datablock
1393
1393
1394 if readerObj.flagNoMoreFiles:
1394 if readerObj.flagNoMoreFiles:
1395 break
1395 break
1396
1396
1397 """
1397 """
1398
1398
1399 ext = ".r"
1399 ext = ".r"
1400
1400
1401 optchar = "D"
1401 optchar = "D"
1402 dataOut = None
1402 dataOut = None
1403
1403
1404
1404
1405 def __init__(self):
1405 def __init__(self):
1406 """
1406 """
1407 Inicializador de la clase VoltageReader para la lectura de datos de voltage.
1407 Inicializador de la clase VoltageReader para la lectura de datos de voltage.
1408
1408
1409 Input:
1409 Input:
1410 dataOut : Objeto de la clase Voltage. Este objeto sera utilizado para
1410 dataOut : Objeto de la clase Voltage. Este objeto sera utilizado para
1411 almacenar un perfil de datos cada vez que se haga un requerimiento
1411 almacenar un perfil de datos cada vez que se haga un requerimiento
1412 (getData). El perfil sera obtenido a partir del buffer de datos,
1412 (getData). El perfil sera obtenido a partir del buffer de datos,
1413 si el buffer esta vacio se hara un nuevo proceso de lectura de un
1413 si el buffer esta vacio se hara un nuevo proceso de lectura de un
1414 bloque de datos.
1414 bloque de datos.
1415 Si este parametro no es pasado se creara uno internamente.
1415 Si este parametro no es pasado se creara uno internamente.
1416
1416
1417 Variables afectadas:
1417 Variables afectadas:
1418 self.dataOut
1418 self.dataOut
1419
1419
1420 Return:
1420 Return:
1421 None
1421 None
1422 """
1422 """
1423
1423
1424 self.isConfig = False
1424 self.isConfig = False
1425
1425
1426 self.datablock = None
1426 self.datablock = None
1427
1427
1428 self.utc = 0
1428 self.utc = 0
1429
1429
1430 self.ext = ".r"
1430 self.ext = ".r"
1431
1431
1432 self.optchar = "D"
1432 self.optchar = "D"
1433
1433
1434 self.basicHeaderObj = BasicHeader(LOCALTIME)
1434 self.basicHeaderObj = BasicHeader(LOCALTIME)
1435
1435
1436 self.systemHeaderObj = SystemHeader()
1436 self.systemHeaderObj = SystemHeader()
1437
1437
1438 self.radarControllerHeaderObj = RadarControllerHeader()
1438 self.radarControllerHeaderObj = RadarControllerHeader()
1439
1439
1440 self.processingHeaderObj = ProcessingHeader()
1440 self.processingHeaderObj = ProcessingHeader()
1441
1441
1442 self.online = 0
1442 self.online = 0
1443
1443
1444 self.fp = None
1444 self.fp = None
1445
1445
1446 self.idFile = None
1446 self.idFile = None
1447
1447
1448 self.dtype = None
1448 self.dtype = None
1449
1449
1450 self.fileSizeByHeader = None
1450 self.fileSizeByHeader = None
1451
1451
1452 self.filenameList = []
1452 self.filenameList = []
1453
1453
1454 self.filename = None
1454 self.filename = None
1455
1455
1456 self.fileSize = None
1456 self.fileSize = None
1457
1457
1458 self.firstHeaderSize = 0
1458 self.firstHeaderSize = 0
1459
1459
1460 self.basicHeaderSize = 24
1460 self.basicHeaderSize = 24
1461
1461
1462 self.pathList = []
1462 self.pathList = []
1463
1463
1464 self.filenameList = []
1464 self.filenameList = []
1465
1465
1466 self.lastUTTime = 0
1466 self.lastUTTime = 0
1467
1467
1468 self.maxTimeStep = 30
1468 self.maxTimeStep = 30
1469
1469
1470 self.flagNoMoreFiles = 0
1470 self.flagNoMoreFiles = 0
1471
1471
1472 self.set = 0
1472 self.set = 0
1473
1473
1474 self.path = None
1474 self.path = None
1475
1475
1476 self.profileIndex = 2**32-1
1476 self.profileIndex = 2**32-1
1477
1477
1478 self.delay = 3 #seconds
1478 self.delay = 3 #seconds
1479
1479
1480 self.nTries = 3 #quantity tries
1480 self.nTries = 3 #quantity tries
1481
1481
1482 self.nFiles = 3 #number of files for searching
1482 self.nFiles = 3 #number of files for searching
1483
1483
1484 self.nReadBlocks = 0
1484 self.nReadBlocks = 0
1485
1485
1486 self.flagIsNewFile = 1
1486 self.flagIsNewFile = 1
1487
1487
1488 self.__isFirstTimeOnline = 1
1488 self.__isFirstTimeOnline = 1
1489
1489
1490 self.ippSeconds = 0
1490 self.ippSeconds = 0
1491
1491
1492 self.flagTimeBlock = 0
1492 self.flagTimeBlock = 0
1493
1493
1494 self.flagIsNewBlock = 0
1494 self.flagIsNewBlock = 0
1495
1495
1496 self.nTotalBlocks = 0
1496 self.nTotalBlocks = 0
1497
1497
1498 self.blocksize = 0
1498 self.blocksize = 0
1499
1499
1500 self.dataOut = self.createObjByDefault()
1500 self.dataOut = self.createObjByDefault()
1501
1501
1502 def createObjByDefault(self):
1502 def createObjByDefault(self):
1503
1503
1504 dataObj = Voltage()
1504 dataObj = Voltage()
1505
1505
1506 return dataObj
1506 return dataObj
1507
1507
1508 def __hasNotDataInBuffer(self):
1508 def __hasNotDataInBuffer(self):
1509 if self.profileIndex >= self.processingHeaderObj.profilesPerBlock:
1509 if self.profileIndex >= self.processingHeaderObj.profilesPerBlock:
1510 return 1
1510 return 1
1511 return 0
1511 return 0
1512
1512
1513
1513
1514 def getBlockDimension(self):
1514 def getBlockDimension(self):
1515 """
1515 """
1516 Obtiene la cantidad de puntos a leer por cada bloque de datos
1516 Obtiene la cantidad de puntos a leer por cada bloque de datos
1517
1517
1518 Affected:
1518 Affected:
1519 self.blocksize
1519 self.blocksize
1520
1520
1521 Return:
1521 Return:
1522 None
1522 None
1523 """
1523 """
1524 pts2read = self.processingHeaderObj.profilesPerBlock * self.processingHeaderObj.nHeights * self.systemHeaderObj.nChannels
1524 pts2read = self.processingHeaderObj.profilesPerBlock * self.processingHeaderObj.nHeights * self.systemHeaderObj.nChannels
1525 self.blocksize = pts2read
1525 self.blocksize = pts2read
1526
1526
1527
1527
1528 def readBlock(self):
1528 def readBlock(self):
1529 """
1529 """
1530 readBlock lee el bloque de datos desde la posicion actual del puntero del archivo
1530 readBlock lee el bloque de datos desde la posicion actual del puntero del archivo
1531 (self.fp) y actualiza todos los parametros relacionados al bloque de datos
1531 (self.fp) y actualiza todos los parametros relacionados al bloque de datos
1532 (metadata + data). La data leida es almacenada en el buffer y el contador del buffer
1532 (metadata + data). La data leida es almacenada en el buffer y el contador del buffer
1533 es seteado a 0
1533 es seteado a 0
1534
1534
1535 Inputs:
1535 Inputs:
1536 None
1536 None
1537
1537
1538 Return:
1538 Return:
1539 None
1539 None
1540
1540
1541 Affected:
1541 Affected:
1542 self.profileIndex
1542 self.profileIndex
1543 self.datablock
1543 self.datablock
1544 self.flagIsNewFile
1544 self.flagIsNewFile
1545 self.flagIsNewBlock
1545 self.flagIsNewBlock
1546 self.nTotalBlocks
1546 self.nTotalBlocks
1547
1547
1548 Exceptions:
1548 Exceptions:
1549 Si un bloque leido no es un bloque valido
1549 Si un bloque leido no es un bloque valido
1550 """
1550 """
1551 current_pointer_location = self.fp.tell()
1551 current_pointer_location = self.fp.tell()
1552 junk = numpy.fromfile( self.fp, self.dtype, self.blocksize )
1552 junk = numpy.fromfile( self.fp, self.dtype, self.blocksize )
1553
1553
1554 try:
1554 try:
1555 junk = junk.reshape( (self.processingHeaderObj.profilesPerBlock, self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels) )
1555 junk = junk.reshape( (self.processingHeaderObj.profilesPerBlock, self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels) )
1556 except:
1556 except:
1557 #print "The read block (%3d) has not enough data" %self.nReadBlocks
1557 #print "The read block (%3d) has not enough data" %self.nReadBlocks
1558
1558
1559 if self.waitDataBlock(pointer_location=current_pointer_location):
1559 if self.waitDataBlock(pointer_location=current_pointer_location):
1560 junk = numpy.fromfile( self.fp, self.dtype, self.blocksize )
1560 junk = numpy.fromfile( self.fp, self.dtype, self.blocksize )
1561 junk = junk.reshape( (self.processingHeaderObj.profilesPerBlock, self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels) )
1561 junk = junk.reshape( (self.processingHeaderObj.profilesPerBlock, self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels) )
1562 # return 0
1562 # return 0
1563
1563
1564 junk = numpy.transpose(junk, (2,0,1))
1564 junk = numpy.transpose(junk, (2,0,1))
1565 self.datablock = junk['real'] + junk['imag']*1j
1565 self.datablock = junk['real'] + junk['imag']*1j
1566
1566
1567 self.profileIndex = 0
1567 self.profileIndex = 0
1568
1568
1569 self.flagIsNewFile = 0
1569 self.flagIsNewFile = 0
1570 self.flagIsNewBlock = 1
1570 self.flagIsNewBlock = 1
1571
1571
1572 self.nTotalBlocks += 1
1572 self.nTotalBlocks += 1
1573 self.nReadBlocks += 1
1573 self.nReadBlocks += 1
1574
1574
1575 return 1
1575 return 1
1576
1576
1577 def getFirstHeader(self):
1577 def getFirstHeader(self):
1578
1578
1579 self.dataOut.dtype = self.dtype
1579 self.dataOut.dtype = self.dtype
1580
1580
1581 self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock
1581 self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock
1582
1582
1583 xf = self.processingHeaderObj.firstHeight + self.processingHeaderObj.nHeights*self.processingHeaderObj.deltaHeight
1583 xf = self.processingHeaderObj.firstHeight + self.processingHeaderObj.nHeights*self.processingHeaderObj.deltaHeight
1584
1584
1585 self.dataOut.heightList = numpy.arange(self.processingHeaderObj.firstHeight, xf, self.processingHeaderObj.deltaHeight)
1585 self.dataOut.heightList = numpy.arange(self.processingHeaderObj.firstHeight, xf, self.processingHeaderObj.deltaHeight)
1586
1586
1587 self.dataOut.channelList = range(self.systemHeaderObj.nChannels)
1587 self.dataOut.channelList = range(self.systemHeaderObj.nChannels)
1588
1588
1589 self.dataOut.ippSeconds = self.ippSeconds
1589 self.dataOut.ippSeconds = self.ippSeconds
1590
1590
1591 self.dataOut.timeInterval = self.ippSeconds * self.processingHeaderObj.nCohInt
1591 self.dataOut.timeInterval = self.ippSeconds * self.processingHeaderObj.nCohInt
1592
1592
1593 self.dataOut.nCohInt = self.processingHeaderObj.nCohInt
1593 self.dataOut.nCohInt = self.processingHeaderObj.nCohInt
1594
1594
1595 self.dataOut.flagShiftFFT = False
1595 self.dataOut.flagShiftFFT = False
1596
1596
1597 if self.radarControllerHeaderObj.code != None:
1597 if self.radarControllerHeaderObj.code != None:
1598
1598
1599 self.dataOut.nCode = self.radarControllerHeaderObj.nCode
1599 self.dataOut.nCode = self.radarControllerHeaderObj.nCode
1600
1600
1601 self.dataOut.nBaud = self.radarControllerHeaderObj.nBaud
1601 self.dataOut.nBaud = self.radarControllerHeaderObj.nBaud
1602
1602
1603 self.dataOut.code = self.radarControllerHeaderObj.code
1603 self.dataOut.code = self.radarControllerHeaderObj.code
1604
1604
1605 self.dataOut.systemHeaderObj = self.systemHeaderObj.copy()
1605 self.dataOut.systemHeaderObj = self.systemHeaderObj.copy()
1606
1606
1607 self.dataOut.radarControllerHeaderObj = self.radarControllerHeaderObj.copy()
1607 self.dataOut.radarControllerHeaderObj = self.radarControllerHeaderObj.copy()
1608
1608
1609 self.dataOut.flagDecodeData = False #asumo q la data no esta decodificada
1609 self.dataOut.flagDecodeData = False #asumo q la data no esta decodificada
1610
1610
1611 self.dataOut.flagDeflipData = False #asumo q la data no esta sin flip
1611 self.dataOut.flagDeflipData = False #asumo q la data no esta sin flip
1612
1612
1613 self.dataOut.flagShiftFFT = False
1613 self.dataOut.flagShiftFFT = False
1614
1614
1615 def getData(self):
1615 def getData(self):
1616 """
1616 """
1617 getData obtiene una unidad de datos del buffer de lectura y la copia a la clase "Voltage"
1617 getData obtiene una unidad de datos del buffer de lectura y la copia a la clase "Voltage"
1618 con todos los parametros asociados a este (metadata). cuando no hay datos en el buffer de
1618 con todos los parametros asociados a este (metadata). cuando no hay datos en el buffer de
1619 lectura es necesario hacer una nueva lectura de los bloques de datos usando "readNextBlock"
1619 lectura es necesario hacer una nueva lectura de los bloques de datos usando "readNextBlock"
1620
1620
1621 Ademas incrementa el contador del buffer en 1.
1621 Ademas incrementa el contador del buffer en 1.
1622
1622
1623 Return:
1623 Return:
1624 data : retorna un perfil de voltages (alturas * canales) copiados desde el
1624 data : retorna un perfil de voltages (alturas * canales) copiados desde el
1625 buffer. Si no hay mas archivos a leer retorna None.
1625 buffer. Si no hay mas archivos a leer retorna None.
1626
1626
1627 Variables afectadas:
1627 Variables afectadas:
1628 self.dataOut
1628 self.dataOut
1629 self.profileIndex
1629 self.profileIndex
1630
1630
1631 Affected:
1631 Affected:
1632 self.dataOut
1632 self.dataOut
1633 self.profileIndex
1633 self.profileIndex
1634 self.flagTimeBlock
1634 self.flagTimeBlock
1635 self.flagIsNewBlock
1635 self.flagIsNewBlock
1636 """
1636 """
1637
1637
1638 if self.flagNoMoreFiles:
1638 if self.flagNoMoreFiles:
1639 self.dataOut.flagNoData = True
1639 self.dataOut.flagNoData = True
1640 print 'Process finished'
1640 print 'Process finished'
1641 return 0
1641 return 0
1642
1642
1643 self.flagTimeBlock = 0
1643 self.flagTimeBlock = 0
1644 self.flagIsNewBlock = 0
1644 self.flagIsNewBlock = 0
1645
1645
1646 if self.__hasNotDataInBuffer():
1646 if self.__hasNotDataInBuffer():
1647
1647
1648 if not( self.readNextBlock() ):
1648 if not( self.readNextBlock() ):
1649 return 0
1649 return 0
1650
1650
1651 self.getFirstHeader()
1651 self.getFirstHeader()
1652
1652
1653 if self.datablock == None:
1653 if self.datablock == None:
1654 self.dataOut.flagNoData = True
1654 self.dataOut.flagNoData = True
1655 return 0
1655 return 0
1656
1656
1657 self.dataOut.data = self.datablock[:,self.profileIndex,:]
1657 self.dataOut.data = self.datablock[:,self.profileIndex,:]
1658
1658
1659 self.dataOut.flagNoData = False
1659 self.dataOut.flagNoData = False
1660
1660
1661 self.getBasicHeader()
1661 self.getBasicHeader()
1662
1662
1663 self.profileIndex += 1
1663 self.profileIndex += 1
1664
1664
1665 self.dataOut.realtime = self.online
1665 self.dataOut.realtime = self.online
1666
1666
1667 return self.dataOut.data
1667 return self.dataOut.data
1668
1668
1669
1669
1670 class VoltageWriter(JRODataWriter):
1670 class VoltageWriter(JRODataWriter):
1671 """
1671 """
1672 Esta clase permite escribir datos de voltajes a archivos procesados (.r). La escritura
1672 Esta clase permite escribir datos de voltajes a archivos procesados (.r). La escritura
1673 de los datos siempre se realiza por bloques.
1673 de los datos siempre se realiza por bloques.
1674 """
1674 """
1675
1675
1676 ext = ".r"
1676 ext = ".r"
1677
1677
1678 optchar = "D"
1678 optchar = "D"
1679
1679
1680 shapeBuffer = None
1680 shapeBuffer = None
1681
1681
1682
1682
1683 def __init__(self):
1683 def __init__(self):
1684 """
1684 """
1685 Inicializador de la clase VoltageWriter para la escritura de datos de espectros.
1685 Inicializador de la clase VoltageWriter para la escritura de datos de espectros.
1686
1686
1687 Affected:
1687 Affected:
1688 self.dataOut
1688 self.dataOut
1689
1689
1690 Return: None
1690 Return: None
1691 """
1691 """
1692
1692
1693 self.nTotalBlocks = 0
1693 self.nTotalBlocks = 0
1694
1694
1695 self.profileIndex = 0
1695 self.profileIndex = 0
1696
1696
1697 self.isConfig = False
1697 self.isConfig = False
1698
1698
1699 self.fp = None
1699 self.fp = None
1700
1700
1701 self.flagIsNewFile = 1
1701 self.flagIsNewFile = 1
1702
1702
1703 self.nTotalBlocks = 0
1703 self.nTotalBlocks = 0
1704
1704
1705 self.flagIsNewBlock = 0
1705 self.flagIsNewBlock = 0
1706
1706
1707 self.setFile = None
1707 self.setFile = None
1708
1708
1709 self.dtype = None
1709 self.dtype = None
1710
1710
1711 self.path = None
1711 self.path = None
1712
1712
1713 self.filename = None
1713 self.filename = None
1714
1714
1715 self.basicHeaderObj = BasicHeader(LOCALTIME)
1715 self.basicHeaderObj = BasicHeader(LOCALTIME)
1716
1716
1717 self.systemHeaderObj = SystemHeader()
1717 self.systemHeaderObj = SystemHeader()
1718
1718
1719 self.radarControllerHeaderObj = RadarControllerHeader()
1719 self.radarControllerHeaderObj = RadarControllerHeader()
1720
1720
1721 self.processingHeaderObj = ProcessingHeader()
1721 self.processingHeaderObj = ProcessingHeader()
1722
1722
1723 def hasAllDataInBuffer(self):
1723 def hasAllDataInBuffer(self):
1724 if self.profileIndex >= self.processingHeaderObj.profilesPerBlock:
1724 if self.profileIndex >= self.processingHeaderObj.profilesPerBlock:
1725 return 1
1725 return 1
1726 return 0
1726 return 0
1727
1727
1728
1728
1729 def setBlockDimension(self):
1729 def setBlockDimension(self):
1730 """
1730 """
1731 Obtiene las formas dimensionales del los subbloques de datos que componen un bloque
1731 Obtiene las formas dimensionales del los subbloques de datos que componen un bloque
1732
1732
1733 Affected:
1733 Affected:
1734 self.shape_spc_Buffer
1734 self.shape_spc_Buffer
1735 self.shape_cspc_Buffer
1735 self.shape_cspc_Buffer
1736 self.shape_dc_Buffer
1736 self.shape_dc_Buffer
1737
1737
1738 Return: None
1738 Return: None
1739 """
1739 """
1740 self.shapeBuffer = (self.processingHeaderObj.profilesPerBlock,
1740 self.shapeBuffer = (self.processingHeaderObj.profilesPerBlock,
1741 self.processingHeaderObj.nHeights,
1741 self.processingHeaderObj.nHeights,
1742 self.systemHeaderObj.nChannels)
1742 self.systemHeaderObj.nChannels)
1743
1743
1744 self.datablock = numpy.zeros((self.systemHeaderObj.nChannels,
1744 self.datablock = numpy.zeros((self.systemHeaderObj.nChannels,
1745 self.processingHeaderObj.profilesPerBlock,
1745 self.processingHeaderObj.profilesPerBlock,
1746 self.processingHeaderObj.nHeights),
1746 self.processingHeaderObj.nHeights),
1747 dtype=numpy.dtype('complex64'))
1747 dtype=numpy.dtype('complex64'))
1748
1748
1749
1749
1750 def writeBlock(self):
1750 def writeBlock(self):
1751 """
1751 """
1752 Escribe el buffer en el file designado
1752 Escribe el buffer en el file designado
1753
1753
1754 Affected:
1754 Affected:
1755 self.profileIndex
1755 self.profileIndex
1756 self.flagIsNewFile
1756 self.flagIsNewFile
1757 self.flagIsNewBlock
1757 self.flagIsNewBlock
1758 self.nTotalBlocks
1758 self.nTotalBlocks
1759 self.blockIndex
1759 self.blockIndex
1760
1760
1761 Return: None
1761 Return: None
1762 """
1762 """
1763 data = numpy.zeros( self.shapeBuffer, self.dtype )
1763 data = numpy.zeros( self.shapeBuffer, self.dtype )
1764
1764
1765 junk = numpy.transpose(self.datablock, (1,2,0))
1765 junk = numpy.transpose(self.datablock, (1,2,0))
1766
1766
1767 data['real'] = junk.real
1767 data['real'] = junk.real
1768 data['imag'] = junk.imag
1768 data['imag'] = junk.imag
1769
1769
1770 data = data.reshape( (-1) )
1770 data = data.reshape( (-1) )
1771
1771
1772 data.tofile( self.fp )
1772 data.tofile( self.fp )
1773
1773
1774 self.datablock.fill(0)
1774 self.datablock.fill(0)
1775
1775
1776 self.profileIndex = 0
1776 self.profileIndex = 0
1777 self.flagIsNewFile = 0
1777 self.flagIsNewFile = 0
1778 self.flagIsNewBlock = 1
1778 self.flagIsNewBlock = 1
1779
1779
1780 self.blockIndex += 1
1780 self.blockIndex += 1
1781 self.nTotalBlocks += 1
1781 self.nTotalBlocks += 1
1782
1782
1783 def putData(self):
1783 def putData(self):
1784 """
1784 """
1785 Setea un bloque de datos y luego los escribe en un file
1785 Setea un bloque de datos y luego los escribe en un file
1786
1786
1787 Affected:
1787 Affected:
1788 self.flagIsNewBlock
1788 self.flagIsNewBlock
1789 self.profileIndex
1789 self.profileIndex
1790
1790
1791 Return:
1791 Return:
1792 0 : Si no hay data o no hay mas files que puedan escribirse
1792 0 : Si no hay data o no hay mas files que puedan escribirse
1793 1 : Si se escribio la data de un bloque en un file
1793 1 : Si se escribio la data de un bloque en un file
1794 """
1794 """
1795 if self.dataOut.flagNoData:
1795 if self.dataOut.flagNoData:
1796 return 0
1796 return 0
1797
1797
1798 self.flagIsNewBlock = 0
1798 self.flagIsNewBlock = 0
1799
1799
1800 if self.dataOut.flagTimeBlock:
1800 if self.dataOut.flagTimeBlock:
1801
1801
1802 self.datablock.fill(0)
1802 self.datablock.fill(0)
1803 self.profileIndex = 0
1803 self.profileIndex = 0
1804 self.setNextFile()
1804 self.setNextFile()
1805
1805
1806 if self.profileIndex == 0:
1806 if self.profileIndex == 0:
1807 self.setBasicHeader()
1807 self.setBasicHeader()
1808
1808
1809 self.datablock[:,self.profileIndex,:] = self.dataOut.data
1809 self.datablock[:,self.profileIndex,:] = self.dataOut.data
1810
1810
1811 self.profileIndex += 1
1811 self.profileIndex += 1
1812
1812
1813 if self.hasAllDataInBuffer():
1813 if self.hasAllDataInBuffer():
1814 #if self.flagIsNewFile:
1814 #if self.flagIsNewFile:
1815 self.writeNextBlock()
1815 self.writeNextBlock()
1816 # self.setFirstHeader()
1816 # self.setFirstHeader()
1817
1817
1818 return 1
1818 return 1
1819
1819
1820 def __getProcessFlags(self):
1820 def __getProcessFlags(self):
1821
1821
1822 processFlags = 0
1822 processFlags = 0
1823
1823
1824 dtype0 = numpy.dtype([('real','<i1'),('imag','<i1')])
1824 dtype0 = numpy.dtype([('real','<i1'),('imag','<i1')])
1825 dtype1 = numpy.dtype([('real','<i2'),('imag','<i2')])
1825 dtype1 = numpy.dtype([('real','<i2'),('imag','<i2')])
1826 dtype2 = numpy.dtype([('real','<i4'),('imag','<i4')])
1826 dtype2 = numpy.dtype([('real','<i4'),('imag','<i4')])
1827 dtype3 = numpy.dtype([('real','<i8'),('imag','<i8')])
1827 dtype3 = numpy.dtype([('real','<i8'),('imag','<i8')])
1828 dtype4 = numpy.dtype([('real','<f4'),('imag','<f4')])
1828 dtype4 = numpy.dtype([('real','<f4'),('imag','<f4')])
1829 dtype5 = numpy.dtype([('real','<f8'),('imag','<f8')])
1829 dtype5 = numpy.dtype([('real','<f8'),('imag','<f8')])
1830
1830
1831 dtypeList = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5]
1831 dtypeList = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5]
1832
1832
1833
1833
1834
1834
1835 datatypeValueList = [PROCFLAG.DATATYPE_CHAR,
1835 datatypeValueList = [PROCFLAG.DATATYPE_CHAR,
1836 PROCFLAG.DATATYPE_SHORT,
1836 PROCFLAG.DATATYPE_SHORT,
1837 PROCFLAG.DATATYPE_LONG,
1837 PROCFLAG.DATATYPE_LONG,
1838 PROCFLAG.DATATYPE_INT64,
1838 PROCFLAG.DATATYPE_INT64,
1839 PROCFLAG.DATATYPE_FLOAT,
1839 PROCFLAG.DATATYPE_FLOAT,
1840 PROCFLAG.DATATYPE_DOUBLE]
1840 PROCFLAG.DATATYPE_DOUBLE]
1841
1841
1842
1842
1843 for index in range(len(dtypeList)):
1843 for index in range(len(dtypeList)):
1844 if self.dataOut.dtype == dtypeList[index]:
1844 if self.dataOut.dtype == dtypeList[index]:
1845 dtypeValue = datatypeValueList[index]
1845 dtypeValue = datatypeValueList[index]
1846 break
1846 break
1847
1847
1848 processFlags += dtypeValue
1848 processFlags += dtypeValue
1849
1849
1850 if self.dataOut.flagDecodeData:
1850 if self.dataOut.flagDecodeData:
1851 processFlags += PROCFLAG.DECODE_DATA
1851 processFlags += PROCFLAG.DECODE_DATA
1852
1852
1853 if self.dataOut.flagDeflipData:
1853 if self.dataOut.flagDeflipData:
1854 processFlags += PROCFLAG.DEFLIP_DATA
1854 processFlags += PROCFLAG.DEFLIP_DATA
1855
1855
1856 if self.dataOut.code != None:
1856 if self.dataOut.code != None:
1857 processFlags += PROCFLAG.DEFINE_PROCESS_CODE
1857 processFlags += PROCFLAG.DEFINE_PROCESS_CODE
1858
1858
1859 if self.dataOut.nCohInt > 1:
1859 if self.dataOut.nCohInt > 1:
1860 processFlags += PROCFLAG.COHERENT_INTEGRATION
1860 processFlags += PROCFLAG.COHERENT_INTEGRATION
1861
1861
1862 return processFlags
1862 return processFlags
1863
1863
1864
1864
1865 def __getBlockSize(self):
1865 def __getBlockSize(self):
1866 '''
1866 '''
1867 Este metodos determina el cantidad de bytes para un bloque de datos de tipo Voltage
1867 Este metodos determina el cantidad de bytes para un bloque de datos de tipo Voltage
1868 '''
1868 '''
1869
1869
1870 dtype0 = numpy.dtype([('real','<i1'),('imag','<i1')])
1870 dtype0 = numpy.dtype([('real','<i1'),('imag','<i1')])
1871 dtype1 = numpy.dtype([('real','<i2'),('imag','<i2')])
1871 dtype1 = numpy.dtype([('real','<i2'),('imag','<i2')])
1872 dtype2 = numpy.dtype([('real','<i4'),('imag','<i4')])
1872 dtype2 = numpy.dtype([('real','<i4'),('imag','<i4')])
1873 dtype3 = numpy.dtype([('real','<i8'),('imag','<i8')])
1873 dtype3 = numpy.dtype([('real','<i8'),('imag','<i8')])
1874 dtype4 = numpy.dtype([('real','<f4'),('imag','<f4')])
1874 dtype4 = numpy.dtype([('real','<f4'),('imag','<f4')])
1875 dtype5 = numpy.dtype([('real','<f8'),('imag','<f8')])
1875 dtype5 = numpy.dtype([('real','<f8'),('imag','<f8')])
1876
1876
1877 dtypeList = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5]
1877 dtypeList = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5]
1878 datatypeValueList = [1,2,4,8,4,8]
1878 datatypeValueList = [1,2,4,8,4,8]
1879 for index in range(len(dtypeList)):
1879 for index in range(len(dtypeList)):
1880 if self.dataOut.dtype == dtypeList[index]:
1880 if self.dataOut.dtype == dtypeList[index]:
1881 datatypeValue = datatypeValueList[index]
1881 datatypeValue = datatypeValueList[index]
1882 break
1882 break
1883
1883
1884 blocksize = int(self.dataOut.nHeights * self.dataOut.nChannels * self.profilesPerBlock * datatypeValue * 2)
1884 blocksize = int(self.dataOut.nHeights * self.dataOut.nChannels * self.profilesPerBlock * datatypeValue * 2)
1885
1885
1886 return blocksize
1886 return blocksize
1887
1887
1888 def setFirstHeader(self):
1888 def setFirstHeader(self):
1889
1889
1890 """
1890 """
1891 Obtiene una copia del First Header
1891 Obtiene una copia del First Header
1892
1892
1893 Affected:
1893 Affected:
1894 self.systemHeaderObj
1894 self.systemHeaderObj
1895 self.radarControllerHeaderObj
1895 self.radarControllerHeaderObj
1896 self.dtype
1896 self.dtype
1897
1897
1898 Return:
1898 Return:
1899 None
1899 None
1900 """
1900 """
1901
1901
1902 self.systemHeaderObj = self.dataOut.systemHeaderObj.copy()
1902 self.systemHeaderObj = self.dataOut.systemHeaderObj.copy()
1903 self.systemHeaderObj.nChannels = self.dataOut.nChannels
1903 self.systemHeaderObj.nChannels = self.dataOut.nChannels
1904 self.radarControllerHeaderObj = self.dataOut.radarControllerHeaderObj.copy()
1904 self.radarControllerHeaderObj = self.dataOut.radarControllerHeaderObj.copy()
1905
1905
1906 self.setBasicHeader()
1906 self.setBasicHeader()
1907
1907
1908 processingHeaderSize = 40 # bytes
1908 processingHeaderSize = 40 # bytes
1909 self.processingHeaderObj.dtype = 0 # Voltage
1909 self.processingHeaderObj.dtype = 0 # Voltage
1910 self.processingHeaderObj.blockSize = self.__getBlockSize()
1910 self.processingHeaderObj.blockSize = self.__getBlockSize()
1911 self.processingHeaderObj.profilesPerBlock = self.profilesPerBlock
1911 self.processingHeaderObj.profilesPerBlock = self.profilesPerBlock
1912 self.processingHeaderObj.dataBlocksPerFile = self.blocksPerFile
1912 self.processingHeaderObj.dataBlocksPerFile = self.blocksPerFile
1913 self.processingHeaderObj.nWindows = 1 #podria ser 1 o self.dataOut.processingHeaderObj.nWindows
1913 self.processingHeaderObj.nWindows = 1 #podria ser 1 o self.dataOut.processingHeaderObj.nWindows
1914 self.processingHeaderObj.processFlags = self.__getProcessFlags()
1914 self.processingHeaderObj.processFlags = self.__getProcessFlags()
1915 self.processingHeaderObj.nCohInt = self.dataOut.nCohInt
1915 self.processingHeaderObj.nCohInt = self.dataOut.nCohInt
1916 self.processingHeaderObj.nIncohInt = 1 # Cuando la data de origen es de tipo Voltage
1916 self.processingHeaderObj.nIncohInt = 1 # Cuando la data de origen es de tipo Voltage
1917 self.processingHeaderObj.totalSpectra = 0 # Cuando la data de origen es de tipo Voltage
1917 self.processingHeaderObj.totalSpectra = 0 # Cuando la data de origen es de tipo Voltage
1918
1918
1919 # if self.dataOut.code != None:
1919 # if self.dataOut.code != None:
1920 # self.processingHeaderObj.code = self.dataOut.code
1920 # self.processingHeaderObj.code = self.dataOut.code
1921 # self.processingHeaderObj.nCode = self.dataOut.nCode
1921 # self.processingHeaderObj.nCode = self.dataOut.nCode
1922 # self.processingHeaderObj.nBaud = self.dataOut.nBaud
1922 # self.processingHeaderObj.nBaud = self.dataOut.nBaud
1923 # codesize = int(8 + 4 * self.dataOut.nCode * self.dataOut.nBaud)
1923 # codesize = int(8 + 4 * self.dataOut.nCode * self.dataOut.nBaud)
1924 # processingHeaderSize += codesize
1924 # processingHeaderSize += codesize
1925
1925
1926 if self.processingHeaderObj.nWindows != 0:
1926 if self.processingHeaderObj.nWindows != 0:
1927 self.processingHeaderObj.firstHeight = self.dataOut.heightList[0]
1927 self.processingHeaderObj.firstHeight = self.dataOut.heightList[0]
1928 self.processingHeaderObj.deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
1928 self.processingHeaderObj.deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
1929 self.processingHeaderObj.nHeights = self.dataOut.nHeights
1929 self.processingHeaderObj.nHeights = self.dataOut.nHeights
1930 self.processingHeaderObj.samplesWin = self.dataOut.nHeights
1930 self.processingHeaderObj.samplesWin = self.dataOut.nHeights
1931 processingHeaderSize += 12
1931 processingHeaderSize += 12
1932
1932
1933 self.processingHeaderObj.size = processingHeaderSize
1933 self.processingHeaderObj.size = processingHeaderSize
1934
1934
1935 class SpectraReader(JRODataReader):
1935 class SpectraReader(JRODataReader):
1936 """
1936 """
1937 Esta clase permite leer datos de espectros desde archivos procesados (.pdata). La lectura
1937 Esta clase permite leer datos de espectros desde archivos procesados (.pdata). La lectura
1938 de los datos siempre se realiza por bloques. Los datos leidos (array de 3 dimensiones)
1938 de los datos siempre se realiza por bloques. Los datos leidos (array de 3 dimensiones)
1939 son almacenados en tres buffer's para el Self Spectra, el Cross Spectra y el DC Channel.
1939 son almacenados en tres buffer's para el Self Spectra, el Cross Spectra y el DC Channel.
1940
1940
1941 paresCanalesIguales * alturas * perfiles (Self Spectra)
1941 paresCanalesIguales * alturas * perfiles (Self Spectra)
1942 paresCanalesDiferentes * alturas * perfiles (Cross Spectra)
1942 paresCanalesDiferentes * alturas * perfiles (Cross Spectra)
1943 canales * alturas (DC Channels)
1943 canales * alturas (DC Channels)
1944
1944
1945 Esta clase contiene instancias (objetos) de las clases BasicHeader, SystemHeader,
1945 Esta clase contiene instancias (objetos) de las clases BasicHeader, SystemHeader,
1946 RadarControllerHeader y Spectra. Los tres primeros se usan para almacenar informacion de la
1946 RadarControllerHeader y Spectra. Los tres primeros se usan para almacenar informacion de la
1947 cabecera de datos (metadata), y el cuarto (Spectra) para obtener y almacenar un bloque de
1947 cabecera de datos (metadata), y el cuarto (Spectra) para obtener y almacenar un bloque de
1948 datos desde el "buffer" cada vez que se ejecute el metodo "getData".
1948 datos desde el "buffer" cada vez que se ejecute el metodo "getData".
1949
1949
1950 Example:
1950 Example:
1951 dpath = "/home/myuser/data"
1951 dpath = "/home/myuser/data"
1952
1952
1953 startTime = datetime.datetime(2010,1,20,0,0,0,0,0,0)
1953 startTime = datetime.datetime(2010,1,20,0,0,0,0,0,0)
1954
1954
1955 endTime = datetime.datetime(2010,1,21,23,59,59,0,0,0)
1955 endTime = datetime.datetime(2010,1,21,23,59,59,0,0,0)
1956
1956
1957 readerObj = SpectraReader()
1957 readerObj = SpectraReader()
1958
1958
1959 readerObj.setup(dpath, startTime, endTime)
1959 readerObj.setup(dpath, startTime, endTime)
1960
1960
1961 while(True):
1961 while(True):
1962
1962
1963 readerObj.getData()
1963 readerObj.getData()
1964
1964
1965 print readerObj.data_spc
1965 print readerObj.data_spc
1966
1966
1967 print readerObj.data_cspc
1967 print readerObj.data_cspc
1968
1968
1969 print readerObj.data_dc
1969 print readerObj.data_dc
1970
1970
1971 if readerObj.flagNoMoreFiles:
1971 if readerObj.flagNoMoreFiles:
1972 break
1972 break
1973
1973
1974 """
1974 """
1975
1975
1976 pts2read_SelfSpectra = 0
1976 pts2read_SelfSpectra = 0
1977
1977
1978 pts2read_CrossSpectra = 0
1978 pts2read_CrossSpectra = 0
1979
1979
1980 pts2read_DCchannels = 0
1980 pts2read_DCchannels = 0
1981
1981
1982 ext = ".pdata"
1982 ext = ".pdata"
1983
1983
1984 optchar = "P"
1984 optchar = "P"
1985
1985
1986 dataOut = None
1986 dataOut = None
1987
1987
1988 nRdChannels = None
1988 nRdChannels = None
1989
1989
1990 nRdPairs = None
1990 nRdPairs = None
1991
1991
1992 rdPairList = []
1992 rdPairList = []
1993
1993
1994 def __init__(self):
1994 def __init__(self):
1995 """
1995 """
1996 Inicializador de la clase SpectraReader para la lectura de datos de espectros.
1996 Inicializador de la clase SpectraReader para la lectura de datos de espectros.
1997
1997
1998 Inputs:
1998 Inputs:
1999 dataOut : Objeto de la clase Spectra. Este objeto sera utilizado para
1999 dataOut : Objeto de la clase Spectra. Este objeto sera utilizado para
2000 almacenar un perfil de datos cada vez que se haga un requerimiento
2000 almacenar un perfil de datos cada vez que se haga un requerimiento
2001 (getData). El perfil sera obtenido a partir del buffer de datos,
2001 (getData). El perfil sera obtenido a partir del buffer de datos,
2002 si el buffer esta vacio se hara un nuevo proceso de lectura de un
2002 si el buffer esta vacio se hara un nuevo proceso de lectura de un
2003 bloque de datos.
2003 bloque de datos.
2004 Si este parametro no es pasado se creara uno internamente.
2004 Si este parametro no es pasado se creara uno internamente.
2005
2005
2006 Affected:
2006 Affected:
2007 self.dataOut
2007 self.dataOut
2008
2008
2009 Return : None
2009 Return : None
2010 """
2010 """
2011
2011
2012 self.isConfig = False
2012 self.isConfig = False
2013
2013
2014 self.pts2read_SelfSpectra = 0
2014 self.pts2read_SelfSpectra = 0
2015
2015
2016 self.pts2read_CrossSpectra = 0
2016 self.pts2read_CrossSpectra = 0
2017
2017
2018 self.pts2read_DCchannels = 0
2018 self.pts2read_DCchannels = 0
2019
2019
2020 self.datablock = None
2020 self.datablock = None
2021
2021
2022 self.utc = None
2022 self.utc = None
2023
2023
2024 self.ext = ".pdata"
2024 self.ext = ".pdata"
2025
2025
2026 self.optchar = "P"
2026 self.optchar = "P"
2027
2027
2028 self.basicHeaderObj = BasicHeader(LOCALTIME)
2028 self.basicHeaderObj = BasicHeader(LOCALTIME)
2029
2029
2030 self.systemHeaderObj = SystemHeader()
2030 self.systemHeaderObj = SystemHeader()
2031
2031
2032 self.radarControllerHeaderObj = RadarControllerHeader()
2032 self.radarControllerHeaderObj = RadarControllerHeader()
2033
2033
2034 self.processingHeaderObj = ProcessingHeader()
2034 self.processingHeaderObj = ProcessingHeader()
2035
2035
2036 self.online = 0
2036 self.online = 0
2037
2037
2038 self.fp = None
2038 self.fp = None
2039
2039
2040 self.idFile = None
2040 self.idFile = None
2041
2041
2042 self.dtype = None
2042 self.dtype = None
2043
2043
2044 self.fileSizeByHeader = None
2044 self.fileSizeByHeader = None
2045
2045
2046 self.filenameList = []
2046 self.filenameList = []
2047
2047
2048 self.filename = None
2048 self.filename = None
2049
2049
2050 self.fileSize = None
2050 self.fileSize = None
2051
2051
2052 self.firstHeaderSize = 0
2052 self.firstHeaderSize = 0
2053
2053
2054 self.basicHeaderSize = 24
2054 self.basicHeaderSize = 24
2055
2055
2056 self.pathList = []
2056 self.pathList = []
2057
2057
2058 self.lastUTTime = 0
2058 self.lastUTTime = 0
2059
2059
2060 self.maxTimeStep = 30
2060 self.maxTimeStep = 30
2061
2061
2062 self.flagNoMoreFiles = 0
2062 self.flagNoMoreFiles = 0
2063
2063
2064 self.set = 0
2064 self.set = 0
2065
2065
2066 self.path = None
2066 self.path = None
2067
2067
2068 self.delay = 60 #seconds
2068 self.delay = 60 #seconds
2069
2069
2070 self.nTries = 3 #quantity tries
2070 self.nTries = 3 #quantity tries
2071
2071
2072 self.nFiles = 3 #number of files for searching
2072 self.nFiles = 3 #number of files for searching
2073
2073
2074 self.nReadBlocks = 0
2074 self.nReadBlocks = 0
2075
2075
2076 self.flagIsNewFile = 1
2076 self.flagIsNewFile = 1
2077
2077
2078 self.__isFirstTimeOnline = 1
2078 self.__isFirstTimeOnline = 1
2079
2079
2080 self.ippSeconds = 0
2080 self.ippSeconds = 0
2081
2081
2082 self.flagTimeBlock = 0
2082 self.flagTimeBlock = 0
2083
2083
2084 self.flagIsNewBlock = 0
2084 self.flagIsNewBlock = 0
2085
2085
2086 self.nTotalBlocks = 0
2086 self.nTotalBlocks = 0
2087
2087
2088 self.blocksize = 0
2088 self.blocksize = 0
2089
2089
2090 self.dataOut = self.createObjByDefault()
2090 self.dataOut = self.createObjByDefault()
2091
2091
2092 self.profileIndex = 1 #Always
2092 self.profileIndex = 1 #Always
2093
2093
2094
2094
2095 def createObjByDefault(self):
2095 def createObjByDefault(self):
2096
2096
2097 dataObj = Spectra()
2097 dataObj = Spectra()
2098
2098
2099 return dataObj
2099 return dataObj
2100
2100
2101 def __hasNotDataInBuffer(self):
2101 def __hasNotDataInBuffer(self):
2102 return 1
2102 return 1
2103
2103
2104
2104
2105 def getBlockDimension(self):
2105 def getBlockDimension(self):
2106 """
2106 """
2107 Obtiene la cantidad de puntos a leer por cada bloque de datos
2107 Obtiene la cantidad de puntos a leer por cada bloque de datos
2108
2108
2109 Affected:
2109 Affected:
2110 self.nRdChannels
2110 self.nRdChannels
2111 self.nRdPairs
2111 self.nRdPairs
2112 self.pts2read_SelfSpectra
2112 self.pts2read_SelfSpectra
2113 self.pts2read_CrossSpectra
2113 self.pts2read_CrossSpectra
2114 self.pts2read_DCchannels
2114 self.pts2read_DCchannels
2115 self.blocksize
2115 self.blocksize
2116 self.dataOut.nChannels
2116 self.dataOut.nChannels
2117 self.dataOut.nPairs
2117 self.dataOut.nPairs
2118
2118
2119 Return:
2119 Return:
2120 None
2120 None
2121 """
2121 """
2122 self.nRdChannels = 0
2122 self.nRdChannels = 0
2123 self.nRdPairs = 0
2123 self.nRdPairs = 0
2124 self.rdPairList = []
2124 self.rdPairList = []
2125
2125
2126 for i in range(0, self.processingHeaderObj.totalSpectra*2, 2):
2126 for i in range(0, self.processingHeaderObj.totalSpectra*2, 2):
2127 if self.processingHeaderObj.spectraComb[i] == self.processingHeaderObj.spectraComb[i+1]:
2127 if self.processingHeaderObj.spectraComb[i] == self.processingHeaderObj.spectraComb[i+1]:
2128 self.nRdChannels = self.nRdChannels + 1 #par de canales iguales
2128 self.nRdChannels = self.nRdChannels + 1 #par de canales iguales
2129 else:
2129 else:
2130 self.nRdPairs = self.nRdPairs + 1 #par de canales diferentes
2130 self.nRdPairs = self.nRdPairs + 1 #par de canales diferentes
2131 self.rdPairList.append((self.processingHeaderObj.spectraComb[i], self.processingHeaderObj.spectraComb[i+1]))
2131 self.rdPairList.append((self.processingHeaderObj.spectraComb[i], self.processingHeaderObj.spectraComb[i+1]))
2132
2132
2133 pts2read = self.processingHeaderObj.nHeights * self.processingHeaderObj.profilesPerBlock
2133 pts2read = self.processingHeaderObj.nHeights * self.processingHeaderObj.profilesPerBlock
2134
2134
2135 self.pts2read_SelfSpectra = int(self.nRdChannels * pts2read)
2135 self.pts2read_SelfSpectra = int(self.nRdChannels * pts2read)
2136 self.blocksize = self.pts2read_SelfSpectra
2136 self.blocksize = self.pts2read_SelfSpectra
2137
2137
2138 if self.processingHeaderObj.flag_cspc:
2138 if self.processingHeaderObj.flag_cspc:
2139 self.pts2read_CrossSpectra = int(self.nRdPairs * pts2read)
2139 self.pts2read_CrossSpectra = int(self.nRdPairs * pts2read)
2140 self.blocksize += self.pts2read_CrossSpectra
2140 self.blocksize += self.pts2read_CrossSpectra
2141
2141
2142 if self.processingHeaderObj.flag_dc:
2142 if self.processingHeaderObj.flag_dc:
2143 self.pts2read_DCchannels = int(self.systemHeaderObj.nChannels * self.processingHeaderObj.nHeights)
2143 self.pts2read_DCchannels = int(self.systemHeaderObj.nChannels * self.processingHeaderObj.nHeights)
2144 self.blocksize += self.pts2read_DCchannels
2144 self.blocksize += self.pts2read_DCchannels
2145
2145
2146 # self.blocksize = self.pts2read_SelfSpectra + self.pts2read_CrossSpectra + self.pts2read_DCchannels
2146 # self.blocksize = self.pts2read_SelfSpectra + self.pts2read_CrossSpectra + self.pts2read_DCchannels
2147
2147
2148
2148
2149 def readBlock(self):
2149 def readBlock(self):
2150 """
2150 """
2151 Lee el bloque de datos desde la posicion actual del puntero del archivo
2151 Lee el bloque de datos desde la posicion actual del puntero del archivo
2152 (self.fp) y actualiza todos los parametros relacionados al bloque de datos
2152 (self.fp) y actualiza todos los parametros relacionados al bloque de datos
2153 (metadata + data). La data leida es almacenada en el buffer y el contador del buffer
2153 (metadata + data). La data leida es almacenada en el buffer y el contador del buffer
2154 es seteado a 0
2154 es seteado a 0
2155
2155
2156 Return: None
2156 Return: None
2157
2157
2158 Variables afectadas:
2158 Variables afectadas:
2159
2159
2160 self.flagIsNewFile
2160 self.flagIsNewFile
2161 self.flagIsNewBlock
2161 self.flagIsNewBlock
2162 self.nTotalBlocks
2162 self.nTotalBlocks
2163 self.data_spc
2163 self.data_spc
2164 self.data_cspc
2164 self.data_cspc
2165 self.data_dc
2165 self.data_dc
2166
2166
2167 Exceptions:
2167 Exceptions:
2168 Si un bloque leido no es un bloque valido
2168 Si un bloque leido no es un bloque valido
2169 """
2169 """
2170 blockOk_flag = False
2170 blockOk_flag = False
2171 fpointer = self.fp.tell()
2171 fpointer = self.fp.tell()
2172
2172
2173 spc = numpy.fromfile( self.fp, self.dtype[0], self.pts2read_SelfSpectra )
2173 spc = numpy.fromfile( self.fp, self.dtype[0], self.pts2read_SelfSpectra )
2174 spc = spc.reshape( (self.nRdChannels, self.processingHeaderObj.nHeights, self.processingHeaderObj.profilesPerBlock) ) #transforma a un arreglo 3D
2174 spc = spc.reshape( (self.nRdChannels, self.processingHeaderObj.nHeights, self.processingHeaderObj.profilesPerBlock) ) #transforma a un arreglo 3D
2175
2175
2176 if self.processingHeaderObj.flag_cspc:
2176 if self.processingHeaderObj.flag_cspc:
2177 cspc = numpy.fromfile( self.fp, self.dtype, self.pts2read_CrossSpectra )
2177 cspc = numpy.fromfile( self.fp, self.dtype, self.pts2read_CrossSpectra )
2178 cspc = cspc.reshape( (self.nRdPairs, self.processingHeaderObj.nHeights, self.processingHeaderObj.profilesPerBlock) ) #transforma a un arreglo 3D
2178 cspc = cspc.reshape( (self.nRdPairs, self.processingHeaderObj.nHeights, self.processingHeaderObj.profilesPerBlock) ) #transforma a un arreglo 3D
2179
2179
2180 if self.processingHeaderObj.flag_dc:
2180 if self.processingHeaderObj.flag_dc:
2181 dc = numpy.fromfile( self.fp, self.dtype, self.pts2read_DCchannels ) #int(self.processingHeaderObj.nHeights*self.systemHeaderObj.nChannels) )
2181 dc = numpy.fromfile( self.fp, self.dtype, self.pts2read_DCchannels ) #int(self.processingHeaderObj.nHeights*self.systemHeaderObj.nChannels) )
2182 dc = dc.reshape( (self.systemHeaderObj.nChannels, self.processingHeaderObj.nHeights) ) #transforma a un arreglo 2D
2182 dc = dc.reshape( (self.systemHeaderObj.nChannels, self.processingHeaderObj.nHeights) ) #transforma a un arreglo 2D
2183
2183
2184
2184
2185 if not(self.processingHeaderObj.shif_fft):
2185 if not(self.processingHeaderObj.shif_fft):
2186 #desplaza a la derecha en el eje 2 determinadas posiciones
2186 #desplaza a la derecha en el eje 2 determinadas posiciones
2187 shift = int(self.processingHeaderObj.profilesPerBlock/2)
2187 shift = int(self.processingHeaderObj.profilesPerBlock/2)
2188 spc = numpy.roll( spc, shift , axis=2 )
2188 spc = numpy.roll( spc, shift , axis=2 )
2189
2189
2190 if self.processingHeaderObj.flag_cspc:
2190 if self.processingHeaderObj.flag_cspc:
2191 #desplaza a la derecha en el eje 2 determinadas posiciones
2191 #desplaza a la derecha en el eje 2 determinadas posiciones
2192 cspc = numpy.roll( cspc, shift, axis=2 )
2192 cspc = numpy.roll( cspc, shift, axis=2 )
2193
2193
2194 # self.processingHeaderObj.shif_fft = True
2194 # self.processingHeaderObj.shif_fft = True
2195
2195
2196 spc = numpy.transpose( spc, (0,2,1) )
2196 spc = numpy.transpose( spc, (0,2,1) )
2197 self.data_spc = spc
2197 self.data_spc = spc
2198
2198
2199 if self.processingHeaderObj.flag_cspc:
2199 if self.processingHeaderObj.flag_cspc:
2200 cspc = numpy.transpose( cspc, (0,2,1) )
2200 cspc = numpy.transpose( cspc, (0,2,1) )
2201 self.data_cspc = cspc['real'] + cspc['imag']*1j
2201 self.data_cspc = cspc['real'] + cspc['imag']*1j
2202 else:
2202 else:
2203 self.data_cspc = None
2203 self.data_cspc = None
2204
2204
2205 if self.processingHeaderObj.flag_dc:
2205 if self.processingHeaderObj.flag_dc:
2206 self.data_dc = dc['real'] + dc['imag']*1j
2206 self.data_dc = dc['real'] + dc['imag']*1j
2207 else:
2207 else:
2208 self.data_dc = None
2208 self.data_dc = None
2209
2209
2210 self.flagIsNewFile = 0
2210 self.flagIsNewFile = 0
2211 self.flagIsNewBlock = 1
2211 self.flagIsNewBlock = 1
2212
2212
2213 self.nTotalBlocks += 1
2213 self.nTotalBlocks += 1
2214 self.nReadBlocks += 1
2214 self.nReadBlocks += 1
2215
2215
2216 return 1
2216 return 1
2217
2217
2218 def getFirstHeader(self):
2218 def getFirstHeader(self):
2219
2219
2220 self.dataOut.dtype = self.dtype
2220 self.dataOut.dtype = self.dtype
2221
2221
2222 self.dataOut.nPairs = self.nRdPairs
2222 self.dataOut.nPairs = self.nRdPairs
2223
2223
2224 self.dataOut.pairsList = self.rdPairList
2224 self.dataOut.pairsList = self.rdPairList
2225
2225
2226 self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock
2226 self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock
2227
2227
2228 self.dataOut.nFFTPoints = self.processingHeaderObj.profilesPerBlock
2228 self.dataOut.nFFTPoints = self.processingHeaderObj.profilesPerBlock
2229
2229
2230 self.dataOut.nCohInt = self.processingHeaderObj.nCohInt
2230 self.dataOut.nCohInt = self.processingHeaderObj.nCohInt
2231
2231
2232 self.dataOut.nIncohInt = self.processingHeaderObj.nIncohInt
2232 self.dataOut.nIncohInt = self.processingHeaderObj.nIncohInt
2233
2233
2234 xf = self.processingHeaderObj.firstHeight + self.processingHeaderObj.nHeights*self.processingHeaderObj.deltaHeight
2234 xf = self.processingHeaderObj.firstHeight + self.processingHeaderObj.nHeights*self.processingHeaderObj.deltaHeight
2235
2235
2236 self.dataOut.heightList = numpy.arange(self.processingHeaderObj.firstHeight, xf, self.processingHeaderObj.deltaHeight)
2236 self.dataOut.heightList = numpy.arange(self.processingHeaderObj.firstHeight, xf, self.processingHeaderObj.deltaHeight)
2237
2237
2238 self.dataOut.channelList = range(self.systemHeaderObj.nChannels)
2238 self.dataOut.channelList = range(self.systemHeaderObj.nChannels)
2239
2239
2240 self.dataOut.ippSeconds = self.ippSeconds
2240 self.dataOut.ippSeconds = self.ippSeconds
2241
2241
2242 self.dataOut.timeInterval = self.ippSeconds * self.processingHeaderObj.nCohInt * self.processingHeaderObj.nIncohInt * self.dataOut.nFFTPoints
2242 self.dataOut.timeInterval = self.ippSeconds * self.processingHeaderObj.nCohInt * self.processingHeaderObj.nIncohInt * self.dataOut.nFFTPoints
2243
2243
2244 self.dataOut.systemHeaderObj = self.systemHeaderObj.copy()
2244 self.dataOut.systemHeaderObj = self.systemHeaderObj.copy()
2245
2245
2246 self.dataOut.radarControllerHeaderObj = self.radarControllerHeaderObj.copy()
2246 self.dataOut.radarControllerHeaderObj = self.radarControllerHeaderObj.copy()
2247
2247
2248 self.dataOut.flagShiftFFT = self.processingHeaderObj.shif_fft
2248 self.dataOut.flagShiftFFT = self.processingHeaderObj.shif_fft
2249
2249
2250 self.dataOut.flagDecodeData = False #asumo q la data no esta decodificada
2250 self.dataOut.flagDecodeData = False #asumo q la data no esta decodificada
2251
2251
2252 self.dataOut.flagDeflipData = True #asumo q la data no esta sin flip
2252 self.dataOut.flagDeflipData = True #asumo q la data no esta sin flip
2253
2253
2254 if self.radarControllerHeaderObj.code != None:
2254 if self.radarControllerHeaderObj.code != None:
2255
2255
2256 self.dataOut.nCode = self.radarControllerHeaderObj.nCode
2256 self.dataOut.nCode = self.radarControllerHeaderObj.nCode
2257
2257
2258 self.dataOut.nBaud = self.radarControllerHeaderObj.nBaud
2258 self.dataOut.nBaud = self.radarControllerHeaderObj.nBaud
2259
2259
2260 self.dataOut.code = self.radarControllerHeaderObj.code
2260 self.dataOut.code = self.radarControllerHeaderObj.code
2261
2261
2262 self.dataOut.flagDecodeData = True
2262 self.dataOut.flagDecodeData = True
2263
2263
2264 def getData(self):
2264 def getData(self):
2265 """
2265 """
2266 Copia el buffer de lectura a la clase "Spectra",
2266 Copia el buffer de lectura a la clase "Spectra",
2267 con todos los parametros asociados a este (metadata). cuando no hay datos en el buffer de
2267 con todos los parametros asociados a este (metadata). cuando no hay datos en el buffer de
2268 lectura es necesario hacer una nueva lectura de los bloques de datos usando "readNextBlock"
2268 lectura es necesario hacer una nueva lectura de los bloques de datos usando "readNextBlock"
2269
2269
2270 Return:
2270 Return:
2271 0 : Si no hay mas archivos disponibles
2271 0 : Si no hay mas archivos disponibles
2272 1 : Si hizo una buena copia del buffer
2272 1 : Si hizo una buena copia del buffer
2273
2273
2274 Affected:
2274 Affected:
2275 self.dataOut
2275 self.dataOut
2276
2276
2277 self.flagTimeBlock
2277 self.flagTimeBlock
2278 self.flagIsNewBlock
2278 self.flagIsNewBlock
2279 """
2279 """
2280
2280
2281 if self.flagNoMoreFiles:
2281 if self.flagNoMoreFiles:
2282 self.dataOut.flagNoData = True
2282 self.dataOut.flagNoData = True
2283 print 'Process finished'
2283 print 'Process finished'
2284 return 0
2284 return 0
2285
2285
2286 self.flagTimeBlock = 0
2286 self.flagTimeBlock = 0
2287 self.flagIsNewBlock = 0
2287 self.flagIsNewBlock = 0
2288
2288
2289 if self.__hasNotDataInBuffer():
2289 if self.__hasNotDataInBuffer():
2290
2290
2291 if not( self.readNextBlock() ):
2291 if not( self.readNextBlock() ):
2292 self.dataOut.flagNoData = True
2292 self.dataOut.flagNoData = True
2293 return 0
2293 return 0
2294
2294
2295 #data es un numpy array de 3 dmensiones (perfiles, alturas y canales)
2295 #data es un numpy array de 3 dmensiones (perfiles, alturas y canales)
2296
2296
2297 if self.data_dc == None:
2297 if self.data_dc == None:
2298 self.dataOut.flagNoData = True
2298 self.dataOut.flagNoData = True
2299 return 0
2299 return 0
2300
2300
2301 self.getBasicHeader()
2301 self.getBasicHeader()
2302
2302
2303 self.getFirstHeader()
2303 self.getFirstHeader()
2304
2304
2305 self.dataOut.data_spc = self.data_spc
2305 self.dataOut.data_spc = self.data_spc
2306
2306
2307 self.dataOut.data_cspc = self.data_cspc
2307 self.dataOut.data_cspc = self.data_cspc
2308
2308
2309 self.dataOut.data_dc = self.data_dc
2309 self.dataOut.data_dc = self.data_dc
2310
2310
2311 self.dataOut.flagNoData = False
2311 self.dataOut.flagNoData = False
2312
2312
2313 self.dataOut.realtime = self.online
2313 self.dataOut.realtime = self.online
2314
2314
2315 return self.dataOut.data_spc
2315 return self.dataOut.data_spc
2316
2316
2317
2317
2318 class SpectraWriter(JRODataWriter):
2318 class SpectraWriter(JRODataWriter):
2319
2319
2320 """
2320 """
2321 Esta clase permite escribir datos de espectros a archivos procesados (.pdata). La escritura
2321 Esta clase permite escribir datos de espectros a archivos procesados (.pdata). La escritura
2322 de los datos siempre se realiza por bloques.
2322 de los datos siempre se realiza por bloques.
2323 """
2323 """
2324
2324
2325 ext = ".pdata"
2325 ext = ".pdata"
2326
2326
2327 optchar = "P"
2327 optchar = "P"
2328
2328
2329 shape_spc_Buffer = None
2329 shape_spc_Buffer = None
2330
2330
2331 shape_cspc_Buffer = None
2331 shape_cspc_Buffer = None
2332
2332
2333 shape_dc_Buffer = None
2333 shape_dc_Buffer = None
2334
2334
2335 data_spc = None
2335 data_spc = None
2336
2336
2337 data_cspc = None
2337 data_cspc = None
2338
2338
2339 data_dc = None
2339 data_dc = None
2340
2340
2341 # dataOut = None
2341 # dataOut = None
2342
2342
2343 def __init__(self):
2343 def __init__(self):
2344 """
2344 """
2345 Inicializador de la clase SpectraWriter para la escritura de datos de espectros.
2345 Inicializador de la clase SpectraWriter para la escritura de datos de espectros.
2346
2346
2347 Affected:
2347 Affected:
2348 self.dataOut
2348 self.dataOut
2349 self.basicHeaderObj
2349 self.basicHeaderObj
2350 self.systemHeaderObj
2350 self.systemHeaderObj
2351 self.radarControllerHeaderObj
2351 self.radarControllerHeaderObj
2352 self.processingHeaderObj
2352 self.processingHeaderObj
2353
2353
2354 Return: None
2354 Return: None
2355 """
2355 """
2356
2356
2357 self.isConfig = False
2357 self.isConfig = False
2358
2358
2359 self.nTotalBlocks = 0
2359 self.nTotalBlocks = 0
2360
2360
2361 self.data_spc = None
2361 self.data_spc = None
2362
2362
2363 self.data_cspc = None
2363 self.data_cspc = None
2364
2364
2365 self.data_dc = None
2365 self.data_dc = None
2366
2366
2367 self.fp = None
2367 self.fp = None
2368
2368
2369 self.flagIsNewFile = 1
2369 self.flagIsNewFile = 1
2370
2370
2371 self.nTotalBlocks = 0
2371 self.nTotalBlocks = 0
2372
2372
2373 self.flagIsNewBlock = 0
2373 self.flagIsNewBlock = 0
2374
2374
2375 self.setFile = None
2375 self.setFile = None
2376
2376
2377 self.dtype = None
2377 self.dtype = None
2378
2378
2379 self.path = None
2379 self.path = None
2380
2380
2381 self.noMoreFiles = 0
2381 self.noMoreFiles = 0
2382
2382
2383 self.filename = None
2383 self.filename = None
2384
2384
2385 self.basicHeaderObj = BasicHeader(LOCALTIME)
2385 self.basicHeaderObj = BasicHeader(LOCALTIME)
2386
2386
2387 self.systemHeaderObj = SystemHeader()
2387 self.systemHeaderObj = SystemHeader()
2388
2388
2389 self.radarControllerHeaderObj = RadarControllerHeader()
2389 self.radarControllerHeaderObj = RadarControllerHeader()
2390
2390
2391 self.processingHeaderObj = ProcessingHeader()
2391 self.processingHeaderObj = ProcessingHeader()
2392
2392
2393
2393
2394 def hasAllDataInBuffer(self):
2394 def hasAllDataInBuffer(self):
2395 return 1
2395 return 1
2396
2396
2397
2397
2398 def setBlockDimension(self):
2398 def setBlockDimension(self):
2399 """
2399 """
2400 Obtiene las formas dimensionales del los subbloques de datos que componen un bloque
2400 Obtiene las formas dimensionales del los subbloques de datos que componen un bloque
2401
2401
2402 Affected:
2402 Affected:
2403 self.shape_spc_Buffer
2403 self.shape_spc_Buffer
2404 self.shape_cspc_Buffer
2404 self.shape_cspc_Buffer
2405 self.shape_dc_Buffer
2405 self.shape_dc_Buffer
2406
2406
2407 Return: None
2407 Return: None
2408 """
2408 """
2409 self.shape_spc_Buffer = (self.dataOut.nChannels,
2409 self.shape_spc_Buffer = (self.dataOut.nChannels,
2410 self.processingHeaderObj.nHeights,
2410 self.processingHeaderObj.nHeights,
2411 self.processingHeaderObj.profilesPerBlock)
2411 self.processingHeaderObj.profilesPerBlock)
2412
2412
2413 self.shape_cspc_Buffer = (self.dataOut.nPairs,
2413 self.shape_cspc_Buffer = (self.dataOut.nPairs,
2414 self.processingHeaderObj.nHeights,
2414 self.processingHeaderObj.nHeights,
2415 self.processingHeaderObj.profilesPerBlock)
2415 self.processingHeaderObj.profilesPerBlock)
2416
2416
2417 self.shape_dc_Buffer = (self.dataOut.nChannels,
2417 self.shape_dc_Buffer = (self.dataOut.nChannels,
2418 self.processingHeaderObj.nHeights)
2418 self.processingHeaderObj.nHeights)
2419
2419
2420
2420
2421 def writeBlock(self):
2421 def writeBlock(self):
2422 """
2422 """
2423 Escribe el buffer en el file designado
2423 Escribe el buffer en el file designado
2424
2424
2425 Affected:
2425 Affected:
2426 self.data_spc
2426 self.data_spc
2427 self.data_cspc
2427 self.data_cspc
2428 self.data_dc
2428 self.data_dc
2429 self.flagIsNewFile
2429 self.flagIsNewFile
2430 self.flagIsNewBlock
2430 self.flagIsNewBlock
2431 self.nTotalBlocks
2431 self.nTotalBlocks
2432 self.nWriteBlocks
2432 self.nWriteBlocks
2433
2433
2434 Return: None
2434 Return: None
2435 """
2435 """
2436
2436
2437 spc = numpy.transpose( self.data_spc, (0,2,1) )
2437 spc = numpy.transpose( self.data_spc, (0,2,1) )
2438 if not( self.processingHeaderObj.shif_fft ):
2438 if not( self.processingHeaderObj.shif_fft ):
2439 spc = numpy.roll( spc, self.processingHeaderObj.profilesPerBlock/2, axis=2 ) #desplaza a la derecha en el eje 2 determinadas posiciones
2439 spc = numpy.roll( spc, self.processingHeaderObj.profilesPerBlock/2, axis=2 ) #desplaza a la derecha en el eje 2 determinadas posiciones
2440 data = spc.reshape((-1))
2440 data = spc.reshape((-1))
2441 data = data.astype(self.dtype[0])
2441 data = data.astype(self.dtype[0])
2442 data.tofile(self.fp)
2442 data.tofile(self.fp)
2443
2443
2444 if self.data_cspc != None:
2444 if self.data_cspc != None:
2445 data = numpy.zeros( self.shape_cspc_Buffer, self.dtype )
2445 data = numpy.zeros( self.shape_cspc_Buffer, self.dtype )
2446 cspc = numpy.transpose( self.data_cspc, (0,2,1) )
2446 cspc = numpy.transpose( self.data_cspc, (0,2,1) )
2447 if not( self.processingHeaderObj.shif_fft ):
2447 if not( self.processingHeaderObj.shif_fft ):
2448 cspc = numpy.roll( cspc, self.processingHeaderObj.profilesPerBlock/2, axis=2 ) #desplaza a la derecha en el eje 2 determinadas posiciones
2448 cspc = numpy.roll( cspc, self.processingHeaderObj.profilesPerBlock/2, axis=2 ) #desplaza a la derecha en el eje 2 determinadas posiciones
2449 data['real'] = cspc.real
2449 data['real'] = cspc.real
2450 data['imag'] = cspc.imag
2450 data['imag'] = cspc.imag
2451 data = data.reshape((-1))
2451 data = data.reshape((-1))
2452 data.tofile(self.fp)
2452 data.tofile(self.fp)
2453
2453
2454 if self.data_dc != None:
2454 if self.data_dc != None:
2455 data = numpy.zeros( self.shape_dc_Buffer, self.dtype )
2455 data = numpy.zeros( self.shape_dc_Buffer, self.dtype )
2456 dc = self.data_dc
2456 dc = self.data_dc
2457 data['real'] = dc.real
2457 data['real'] = dc.real
2458 data['imag'] = dc.imag
2458 data['imag'] = dc.imag
2459 data = data.reshape((-1))
2459 data = data.reshape((-1))
2460 data.tofile(self.fp)
2460 data.tofile(self.fp)
2461
2461
2462 self.data_spc.fill(0)
2462 self.data_spc.fill(0)
2463
2463
2464 if self.data_dc != None:
2464 if self.data_dc != None:
2465 self.data_dc.fill(0)
2465 self.data_dc.fill(0)
2466
2466
2467 if self.data_cspc != None:
2467 if self.data_cspc != None:
2468 self.data_cspc.fill(0)
2468 self.data_cspc.fill(0)
2469
2469
2470 self.flagIsNewFile = 0
2470 self.flagIsNewFile = 0
2471 self.flagIsNewBlock = 1
2471 self.flagIsNewBlock = 1
2472 self.nTotalBlocks += 1
2472 self.nTotalBlocks += 1
2473 self.nWriteBlocks += 1
2473 self.nWriteBlocks += 1
2474 self.blockIndex += 1
2474 self.blockIndex += 1
2475
2475
2476
2476
2477 def putData(self):
2477 def putData(self):
2478 """
2478 """
2479 Setea un bloque de datos y luego los escribe en un file
2479 Setea un bloque de datos y luego los escribe en un file
2480
2480
2481 Affected:
2481 Affected:
2482 self.data_spc
2482 self.data_spc
2483 self.data_cspc
2483 self.data_cspc
2484 self.data_dc
2484 self.data_dc
2485
2485
2486 Return:
2486 Return:
2487 0 : Si no hay data o no hay mas files que puedan escribirse
2487 0 : Si no hay data o no hay mas files que puedan escribirse
2488 1 : Si se escribio la data de un bloque en un file
2488 1 : Si se escribio la data de un bloque en un file
2489 """
2489 """
2490
2490
2491 if self.dataOut.flagNoData:
2491 if self.dataOut.flagNoData:
2492 return 0
2492 return 0
2493
2493
2494 self.flagIsNewBlock = 0
2494 self.flagIsNewBlock = 0
2495
2495
2496 if self.dataOut.flagTimeBlock:
2496 if self.dataOut.flagTimeBlock:
2497 self.data_spc.fill(0)
2497 self.data_spc.fill(0)
2498 self.data_cspc.fill(0)
2498 self.data_cspc.fill(0)
2499 self.data_dc.fill(0)
2499 self.data_dc.fill(0)
2500 self.setNextFile()
2500 self.setNextFile()
2501
2501
2502 if self.flagIsNewFile == 0:
2502 if self.flagIsNewFile == 0:
2503 self.setBasicHeader()
2503 self.setBasicHeader()
2504
2504
2505 self.data_spc = self.dataOut.data_spc.copy()
2505 self.data_spc = self.dataOut.data_spc.copy()
2506 if self.dataOut.data_cspc != None:
2506 if self.dataOut.data_cspc != None:
2507 self.data_cspc = self.dataOut.data_cspc.copy()
2507 self.data_cspc = self.dataOut.data_cspc.copy()
2508 self.data_dc = self.dataOut.data_dc.copy()
2508 self.data_dc = self.dataOut.data_dc.copy()
2509
2509
2510 # #self.processingHeaderObj.dataBlocksPerFile)
2510 # #self.processingHeaderObj.dataBlocksPerFile)
2511 if self.hasAllDataInBuffer():
2511 if self.hasAllDataInBuffer():
2512 # self.setFirstHeader()
2512 # self.setFirstHeader()
2513 self.writeNextBlock()
2513 self.writeNextBlock()
2514
2514
2515 return 1
2515 return 1
2516
2516
2517
2517
2518 def __getProcessFlags(self):
2518 def __getProcessFlags(self):
2519
2519
2520 processFlags = 0
2520 processFlags = 0
2521
2521
2522 dtype0 = numpy.dtype([('real','<i1'),('imag','<i1')])
2522 dtype0 = numpy.dtype([('real','<i1'),('imag','<i1')])
2523 dtype1 = numpy.dtype([('real','<i2'),('imag','<i2')])
2523 dtype1 = numpy.dtype([('real','<i2'),('imag','<i2')])
2524 dtype2 = numpy.dtype([('real','<i4'),('imag','<i4')])
2524 dtype2 = numpy.dtype([('real','<i4'),('imag','<i4')])
2525 dtype3 = numpy.dtype([('real','<i8'),('imag','<i8')])
2525 dtype3 = numpy.dtype([('real','<i8'),('imag','<i8')])
2526 dtype4 = numpy.dtype([('real','<f4'),('imag','<f4')])
2526 dtype4 = numpy.dtype([('real','<f4'),('imag','<f4')])
2527 dtype5 = numpy.dtype([('real','<f8'),('imag','<f8')])
2527 dtype5 = numpy.dtype([('real','<f8'),('imag','<f8')])
2528
2528
2529 dtypeList = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5]
2529 dtypeList = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5]
2530
2530
2531
2531
2532
2532
2533 datatypeValueList = [PROCFLAG.DATATYPE_CHAR,
2533 datatypeValueList = [PROCFLAG.DATATYPE_CHAR,
2534 PROCFLAG.DATATYPE_SHORT,
2534 PROCFLAG.DATATYPE_SHORT,
2535 PROCFLAG.DATATYPE_LONG,
2535 PROCFLAG.DATATYPE_LONG,
2536 PROCFLAG.DATATYPE_INT64,
2536 PROCFLAG.DATATYPE_INT64,
2537 PROCFLAG.DATATYPE_FLOAT,
2537 PROCFLAG.DATATYPE_FLOAT,
2538 PROCFLAG.DATATYPE_DOUBLE]
2538 PROCFLAG.DATATYPE_DOUBLE]
2539
2539
2540
2540
2541 for index in range(len(dtypeList)):
2541 for index in range(len(dtypeList)):
2542 if self.dataOut.dtype == dtypeList[index]:
2542 if self.dataOut.dtype == dtypeList[index]:
2543 dtypeValue = datatypeValueList[index]
2543 dtypeValue = datatypeValueList[index]
2544 break
2544 break
2545
2545
2546 processFlags += dtypeValue
2546 processFlags += dtypeValue
2547
2547
2548 if self.dataOut.flagDecodeData:
2548 if self.dataOut.flagDecodeData:
2549 processFlags += PROCFLAG.DECODE_DATA
2549 processFlags += PROCFLAG.DECODE_DATA
2550
2550
2551 if self.dataOut.flagDeflipData:
2551 if self.dataOut.flagDeflipData:
2552 processFlags += PROCFLAG.DEFLIP_DATA
2552 processFlags += PROCFLAG.DEFLIP_DATA
2553
2553
2554 if self.dataOut.code != None:
2554 if self.dataOut.code != None:
2555 processFlags += PROCFLAG.DEFINE_PROCESS_CODE
2555 processFlags += PROCFLAG.DEFINE_PROCESS_CODE
2556
2556
2557 if self.dataOut.nIncohInt > 1:
2557 if self.dataOut.nIncohInt > 1:
2558 processFlags += PROCFLAG.INCOHERENT_INTEGRATION
2558 processFlags += PROCFLAG.INCOHERENT_INTEGRATION
2559
2559
2560 if self.dataOut.data_dc != None:
2560 if self.dataOut.data_dc != None:
2561 processFlags += PROCFLAG.SAVE_CHANNELS_DC
2561 processFlags += PROCFLAG.SAVE_CHANNELS_DC
2562
2562
2563 return processFlags
2563 return processFlags
2564
2564
2565
2565
2566 def __getBlockSize(self):
2566 def __getBlockSize(self):
2567 '''
2567 '''
2568 Este metodos determina el cantidad de bytes para un bloque de datos de tipo Spectra
2568 Este metodos determina el cantidad de bytes para un bloque de datos de tipo Spectra
2569 '''
2569 '''
2570
2570
2571 dtype0 = numpy.dtype([('real','<i1'),('imag','<i1')])
2571 dtype0 = numpy.dtype([('real','<i1'),('imag','<i1')])
2572 dtype1 = numpy.dtype([('real','<i2'),('imag','<i2')])
2572 dtype1 = numpy.dtype([('real','<i2'),('imag','<i2')])
2573 dtype2 = numpy.dtype([('real','<i4'),('imag','<i4')])
2573 dtype2 = numpy.dtype([('real','<i4'),('imag','<i4')])
2574 dtype3 = numpy.dtype([('real','<i8'),('imag','<i8')])
2574 dtype3 = numpy.dtype([('real','<i8'),('imag','<i8')])
2575 dtype4 = numpy.dtype([('real','<f4'),('imag','<f4')])
2575 dtype4 = numpy.dtype([('real','<f4'),('imag','<f4')])
2576 dtype5 = numpy.dtype([('real','<f8'),('imag','<f8')])
2576 dtype5 = numpy.dtype([('real','<f8'),('imag','<f8')])
2577
2577
2578 dtypeList = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5]
2578 dtypeList = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5]
2579 datatypeValueList = [1,2,4,8,4,8]
2579 datatypeValueList = [1,2,4,8,4,8]
2580 for index in range(len(dtypeList)):
2580 for index in range(len(dtypeList)):
2581 if self.dataOut.dtype == dtypeList[index]:
2581 if self.dataOut.dtype == dtypeList[index]:
2582 datatypeValue = datatypeValueList[index]
2582 datatypeValue = datatypeValueList[index]
2583 break
2583 break
2584
2584
2585
2585
2586 pts2write = self.dataOut.nHeights * self.dataOut.nFFTPoints
2586 pts2write = self.dataOut.nHeights * self.dataOut.nFFTPoints
2587
2587
2588 pts2write_SelfSpectra = int(self.dataOut.nChannels * pts2write)
2588 pts2write_SelfSpectra = int(self.dataOut.nChannels * pts2write)
2589 blocksize = (pts2write_SelfSpectra*datatypeValue)
2589 blocksize = (pts2write_SelfSpectra*datatypeValue)
2590
2590
2591 if self.dataOut.data_cspc != None:
2591 if self.dataOut.data_cspc != None:
2592 pts2write_CrossSpectra = int(self.dataOut.nPairs * pts2write)
2592 pts2write_CrossSpectra = int(self.dataOut.nPairs * pts2write)
2593 blocksize += (pts2write_CrossSpectra*datatypeValue*2)
2593 blocksize += (pts2write_CrossSpectra*datatypeValue*2)
2594
2594
2595 if self.dataOut.data_dc != None:
2595 if self.dataOut.data_dc != None:
2596 pts2write_DCchannels = int(self.dataOut.nChannels * self.dataOut.nHeights)
2596 pts2write_DCchannels = int(self.dataOut.nChannels * self.dataOut.nHeights)
2597 blocksize += (pts2write_DCchannels*datatypeValue*2)
2597 blocksize += (pts2write_DCchannels*datatypeValue*2)
2598
2598
2599 blocksize = blocksize #* datatypeValue * 2 #CORREGIR ESTO
2599 blocksize = blocksize #* datatypeValue * 2 #CORREGIR ESTO
2600
2600
2601 return blocksize
2601 return blocksize
2602
2602
2603 def setFirstHeader(self):
2603 def setFirstHeader(self):
2604
2604
2605 """
2605 """
2606 Obtiene una copia del First Header
2606 Obtiene una copia del First Header
2607
2607
2608 Affected:
2608 Affected:
2609 self.systemHeaderObj
2609 self.systemHeaderObj
2610 self.radarControllerHeaderObj
2610 self.radarControllerHeaderObj
2611 self.dtype
2611 self.dtype
2612
2612
2613 Return:
2613 Return:
2614 None
2614 None
2615 """
2615 """
2616
2616
2617 self.systemHeaderObj = self.dataOut.systemHeaderObj.copy()
2617 self.systemHeaderObj = self.dataOut.systemHeaderObj.copy()
2618 self.systemHeaderObj.nChannels = self.dataOut.nChannels
2618 self.systemHeaderObj.nChannels = self.dataOut.nChannels
2619 self.radarControllerHeaderObj = self.dataOut.radarControllerHeaderObj.copy()
2619 self.radarControllerHeaderObj = self.dataOut.radarControllerHeaderObj.copy()
2620 old_code_size = self.dataOut.radarControllerHeaderObj.code_size
2620 old_code_size = self.dataOut.radarControllerHeaderObj.code_size
2621 new_code_size = int(numpy.ceil(self.dataOut.nBaud/32.))*self.dataOut.nCode*4
2621 new_code_size = int(numpy.ceil(self.dataOut.nBaud/32.))*self.dataOut.nCode*4
2622 self.radarControllerHeaderObj.size = self.radarControllerHeaderObj.size - old_code_size + new_code_size
2622 self.radarControllerHeaderObj.size = self.radarControllerHeaderObj.size - old_code_size + new_code_size
2623
2623
2624 self.setBasicHeader()
2624 self.setBasicHeader()
2625
2625
2626 processingHeaderSize = 40 # bytes
2626 processingHeaderSize = 40 # bytes
2627 self.processingHeaderObj.dtype = 1 # Spectra
2627 self.processingHeaderObj.dtype = 1 # Spectra
2628 self.processingHeaderObj.blockSize = self.__getBlockSize()
2628 self.processingHeaderObj.blockSize = self.__getBlockSize()
2629 self.processingHeaderObj.profilesPerBlock = self.dataOut.nFFTPoints
2629 self.processingHeaderObj.profilesPerBlock = self.dataOut.nFFTPoints
2630 self.processingHeaderObj.dataBlocksPerFile = self.blocksPerFile
2630 self.processingHeaderObj.dataBlocksPerFile = self.blocksPerFile
2631 self.processingHeaderObj.nWindows = 1 #podria ser 1 o self.dataOut.processingHeaderObj.nWindows
2631 self.processingHeaderObj.nWindows = 1 #podria ser 1 o self.dataOut.processingHeaderObj.nWindows
2632 self.processingHeaderObj.processFlags = self.__getProcessFlags()
2632 self.processingHeaderObj.processFlags = self.__getProcessFlags()
2633 self.processingHeaderObj.nCohInt = self.dataOut.nCohInt# Se requiere para determinar el valor de timeInterval
2633 self.processingHeaderObj.nCohInt = self.dataOut.nCohInt# Se requiere para determinar el valor de timeInterval
2634 self.processingHeaderObj.nIncohInt = self.dataOut.nIncohInt
2634 self.processingHeaderObj.nIncohInt = self.dataOut.nIncohInt
2635 self.processingHeaderObj.totalSpectra = self.dataOut.nPairs + self.dataOut.nChannels
2635 self.processingHeaderObj.totalSpectra = self.dataOut.nPairs + self.dataOut.nChannels
2636 self.processingHeaderObj.shif_fft = self.dataOut.flagShiftFFT
2636 self.processingHeaderObj.shif_fft = self.dataOut.flagShiftFFT
2637
2637
2638 if self.processingHeaderObj.totalSpectra > 0:
2638 if self.processingHeaderObj.totalSpectra > 0:
2639 channelList = []
2639 channelList = []
2640 for channel in range(self.dataOut.nChannels):
2640 for channel in range(self.dataOut.nChannels):
2641 channelList.append(channel)
2641 channelList.append(channel)
2642 channelList.append(channel)
2642 channelList.append(channel)
2643
2643
2644 pairsList = []
2644 pairsList = []
2645 if self.dataOut.nPairs > 0:
2645 if self.dataOut.nPairs > 0:
2646 for pair in self.dataOut.pairsList:
2646 for pair in self.dataOut.pairsList:
2647 pairsList.append(pair[0])
2647 pairsList.append(pair[0])
2648 pairsList.append(pair[1])
2648 pairsList.append(pair[1])
2649
2649
2650 spectraComb = channelList + pairsList
2650 spectraComb = channelList + pairsList
2651 spectraComb = numpy.array(spectraComb,dtype="u1")
2651 spectraComb = numpy.array(spectraComb,dtype="u1")
2652 self.processingHeaderObj.spectraComb = spectraComb
2652 self.processingHeaderObj.spectraComb = spectraComb
2653 sizeOfSpcComb = len(spectraComb)
2653 sizeOfSpcComb = len(spectraComb)
2654 processingHeaderSize += sizeOfSpcComb
2654 processingHeaderSize += sizeOfSpcComb
2655
2655
2656 # The processing header should not have information about code
2656 # The processing header should not have information about code
2657 # if self.dataOut.code != None:
2657 # if self.dataOut.code != None:
2658 # self.processingHeaderObj.code = self.dataOut.code
2658 # self.processingHeaderObj.code = self.dataOut.code
2659 # self.processingHeaderObj.nCode = self.dataOut.nCode
2659 # self.processingHeaderObj.nCode = self.dataOut.nCode
2660 # self.processingHeaderObj.nBaud = self.dataOut.nBaud
2660 # self.processingHeaderObj.nBaud = self.dataOut.nBaud
2661 # nCodeSize = 4 # bytes
2661 # nCodeSize = 4 # bytes
2662 # nBaudSize = 4 # bytes
2662 # nBaudSize = 4 # bytes
2663 # codeSize = 4 # bytes
2663 # codeSize = 4 # bytes
2664 # sizeOfCode = int(nCodeSize + nBaudSize + codeSize * self.dataOut.nCode * self.dataOut.nBaud)
2664 # sizeOfCode = int(nCodeSize + nBaudSize + codeSize * self.dataOut.nCode * self.dataOut.nBaud)
2665 # processingHeaderSize += sizeOfCode
2665 # processingHeaderSize += sizeOfCode
2666
2666
2667 if self.processingHeaderObj.nWindows != 0:
2667 if self.processingHeaderObj.nWindows != 0:
2668 self.processingHeaderObj.firstHeight = self.dataOut.heightList[0]
2668 self.processingHeaderObj.firstHeight = self.dataOut.heightList[0]
2669 self.processingHeaderObj.deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
2669 self.processingHeaderObj.deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
2670 self.processingHeaderObj.nHeights = self.dataOut.nHeights
2670 self.processingHeaderObj.nHeights = self.dataOut.nHeights
2671 self.processingHeaderObj.samplesWin = self.dataOut.nHeights
2671 self.processingHeaderObj.samplesWin = self.dataOut.nHeights
2672 sizeOfFirstHeight = 4
2672 sizeOfFirstHeight = 4
2673 sizeOfdeltaHeight = 4
2673 sizeOfdeltaHeight = 4
2674 sizeOfnHeights = 4
2674 sizeOfnHeights = 4
2675 sizeOfWindows = (sizeOfFirstHeight + sizeOfdeltaHeight + sizeOfnHeights)*self.processingHeaderObj.nWindows
2675 sizeOfWindows = (sizeOfFirstHeight + sizeOfdeltaHeight + sizeOfnHeights)*self.processingHeaderObj.nWindows
2676 processingHeaderSize += sizeOfWindows
2676 processingHeaderSize += sizeOfWindows
2677
2677
2678 self.processingHeaderObj.size = processingHeaderSize
2678 self.processingHeaderObj.size = processingHeaderSize
2679
2679
2680 class SpectraHeisWriter(Operation):
2680 class SpectraHeisWriter(Operation):
2681 # set = None
2681 # set = None
2682 setFile = None
2682 setFile = None
2683 idblock = None
2683 idblock = None
2684 doypath = None
2684 doypath = None
2685 subfolder = None
2685 subfolder = None
2686
2686
2687 def __init__(self):
2687 def __init__(self):
2688 self.wrObj = FITS()
2688 self.wrObj = FITS()
2689 # self.dataOut = dataOut
2689 # self.dataOut = dataOut
2690 self.nTotalBlocks=0
2690 self.nTotalBlocks=0
2691 # self.set = None
2691 # self.set = None
2692 self.setFile = None
2692 self.setFile = None
2693 self.idblock = 0
2693 self.idblock = 0
2694 self.wrpath = None
2694 self.wrpath = None
2695 self.doypath = None
2695 self.doypath = None
2696 self.subfolder = None
2696 self.subfolder = None
2697 self.isConfig = False
2697 self.isConfig = False
2698
2698
2699 def isNumber(str):
2699 def isNumber(str):
2700 """
2700 """
2701 Chequea si el conjunto de caracteres que componen un string puede ser convertidos a un numero.
2701 Chequea si el conjunto de caracteres que componen un string puede ser convertidos a un numero.
2702
2702
2703 Excepciones:
2703 Excepciones:
2704 Si un determinado string no puede ser convertido a numero
2704 Si un determinado string no puede ser convertido a numero
2705 Input:
2705 Input:
2706 str, string al cual se le analiza para determinar si convertible a un numero o no
2706 str, string al cual se le analiza para determinar si convertible a un numero o no
2707
2707
2708 Return:
2708 Return:
2709 True : si el string es uno numerico
2709 True : si el string es uno numerico
2710 False : no es un string numerico
2710 False : no es un string numerico
2711 """
2711 """
2712 try:
2712 try:
2713 float( str )
2713 float( str )
2714 return True
2714 return True
2715 except:
2715 except:
2716 return False
2716 return False
2717
2717
2718 def setup(self, dataOut, wrpath):
2718 def setup(self, dataOut, wrpath):
2719
2719
2720 if not(os.path.exists(wrpath)):
2720 if not(os.path.exists(wrpath)):
2721 os.mkdir(wrpath)
2721 os.mkdir(wrpath)
2722
2722
2723 self.wrpath = wrpath
2723 self.wrpath = wrpath
2724 # self.setFile = 0
2724 # self.setFile = 0
2725 self.dataOut = dataOut
2725 self.dataOut = dataOut
2726
2726
2727 def putData(self):
2727 def putData(self):
2728 name= time.localtime( self.dataOut.utctime)
2728 name= time.localtime( self.dataOut.utctime)
2729 ext=".fits"
2729 ext=".fits"
2730
2730
2731 if self.doypath == None:
2731 if self.doypath == None:
2732 self.subfolder = 'F%4.4d%3.3d_%d' % (name.tm_year,name.tm_yday,time.mktime(datetime.datetime.now().timetuple()))
2732 self.subfolder = 'F%4.4d%3.3d_%d' % (name.tm_year,name.tm_yday,time.mktime(datetime.datetime.now().timetuple()))
2733 self.doypath = os.path.join( self.wrpath, self.subfolder )
2733 self.doypath = os.path.join( self.wrpath, self.subfolder )
2734 os.mkdir(self.doypath)
2734 os.mkdir(self.doypath)
2735
2735
2736 if self.setFile == None:
2736 if self.setFile == None:
2737 # self.set = self.dataOut.set
2737 # self.set = self.dataOut.set
2738 self.setFile = 0
2738 self.setFile = 0
2739 # if self.set != self.dataOut.set:
2739 # if self.set != self.dataOut.set:
2740 ## self.set = self.dataOut.set
2740 ## self.set = self.dataOut.set
2741 # self.setFile = 0
2741 # self.setFile = 0
2742
2742
2743 #make the filename
2743 #make the filename
2744 file = 'D%4.4d%3.3d_%3.3d%s' % (name.tm_year,name.tm_yday,self.setFile,ext)
2744 file = 'D%4.4d%3.3d_%3.3d%s' % (name.tm_year,name.tm_yday,self.setFile,ext)
2745
2745
2746 filename = os.path.join(self.wrpath,self.subfolder, file)
2746 filename = os.path.join(self.wrpath,self.subfolder, file)
2747
2747
2748 idblock = numpy.array([self.idblock],dtype="int64")
2748 idblock = numpy.array([self.idblock],dtype="int64")
2749 header=self.wrObj.cFImage(idblock=idblock,
2749 header=self.wrObj.cFImage(idblock=idblock,
2750 year=time.gmtime(self.dataOut.utctime).tm_year,
2750 year=time.gmtime(self.dataOut.utctime).tm_year,
2751 month=time.gmtime(self.dataOut.utctime).tm_mon,
2751 month=time.gmtime(self.dataOut.utctime).tm_mon,
2752 day=time.gmtime(self.dataOut.utctime).tm_mday,
2752 day=time.gmtime(self.dataOut.utctime).tm_mday,
2753 hour=time.gmtime(self.dataOut.utctime).tm_hour,
2753 hour=time.gmtime(self.dataOut.utctime).tm_hour,
2754 minute=time.gmtime(self.dataOut.utctime).tm_min,
2754 minute=time.gmtime(self.dataOut.utctime).tm_min,
2755 second=time.gmtime(self.dataOut.utctime).tm_sec)
2755 second=time.gmtime(self.dataOut.utctime).tm_sec)
2756
2756
2757 c=3E8
2757 c=3E8
2758 deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
2758 deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
2759 freq=numpy.arange(-1*self.dataOut.nHeights/2.,self.dataOut.nHeights/2.)*(c/(2*deltaHeight*1000))
2759 freq=numpy.arange(-1*self.dataOut.nHeights/2.,self.dataOut.nHeights/2.)*(c/(2*deltaHeight*1000))
2760
2760
2761 colList = []
2761 colList = []
2762
2762
2763 colFreq=self.wrObj.setColF(name="freq", format=str(self.dataOut.nFFTPoints)+'E', array=freq)
2763 colFreq=self.wrObj.setColF(name="freq", format=str(self.dataOut.nFFTPoints)+'E', array=freq)
2764
2764
2765 colList.append(colFreq)
2765 colList.append(colFreq)
2766
2766
2767 nchannel=self.dataOut.nChannels
2767 nchannel=self.dataOut.nChannels
2768
2768
2769 for i in range(nchannel):
2769 for i in range(nchannel):
2770 col = self.wrObj.writeData(name="PCh"+str(i+1),
2770 col = self.wrObj.writeData(name="PCh"+str(i+1),
2771 format=str(self.dataOut.nFFTPoints)+'E',
2771 format=str(self.dataOut.nFFTPoints)+'E',
2772 data=10*numpy.log10(self.dataOut.data_spc[i,:]))
2772 data=10*numpy.log10(self.dataOut.data_spc[i,:]))
2773
2773
2774 colList.append(col)
2774 colList.append(col)
2775
2775
2776 data=self.wrObj.Ctable(colList=colList)
2776 data=self.wrObj.Ctable(colList=colList)
2777
2777
2778 self.wrObj.CFile(header,data)
2778 self.wrObj.CFile(header,data)
2779
2779
2780 self.wrObj.wFile(filename)
2780 self.wrObj.wFile(filename)
2781
2781
2782 #update the setFile
2782 #update the setFile
2783 self.setFile += 1
2783 self.setFile += 1
2784 self.idblock += 1
2784 self.idblock += 1
2785
2785
2786 return 1
2786 return 1
2787
2787
2788 def run(self, dataOut, **kwargs):
2788 def run(self, dataOut, **kwargs):
2789
2789
2790 if not(self.isConfig):
2790 if not(self.isConfig):
2791
2791
2792 self.setup(dataOut, **kwargs)
2792 self.setup(dataOut, **kwargs)
2793 self.isConfig = True
2793 self.isConfig = True
2794
2794
2795 self.putData()
2795 self.putData()
2796
2796
2797
2797
2798
2798
2799 class ParameterConf:
2799 class ParameterConf:
2800 ELEMENTNAME = 'Parameter'
2800 ELEMENTNAME = 'Parameter'
2801 def __init__(self):
2801 def __init__(self):
2802 self.name = ''
2802 self.name = ''
2803 self.value = ''
2803 self.value = ''
2804
2804
2805 def readXml(self, parmElement):
2805 def readXml(self, parmElement):
2806 self.name = parmElement.get('name')
2806 self.name = parmElement.get('name')
2807 self.value = parmElement.get('value')
2807 self.value = parmElement.get('value')
2808
2808
2809 def getElementName(self):
2809 def getElementName(self):
2810 return self.ELEMENTNAME
2810 return self.ELEMENTNAME
2811
2811
2812 class Metadata:
2812 class Metadata:
2813
2813
2814 def __init__(self, filename):
2814 def __init__(self, filename):
2815 self.parmConfObjList = []
2815 self.parmConfObjList = []
2816 self.readXml(filename)
2816 self.readXml(filename)
2817
2817
2818 def readXml(self, filename):
2818 def readXml(self, filename):
2819 self.projectElement = None
2819 self.projectElement = None
2820 self.procUnitConfObjDict = {}
2820 self.procUnitConfObjDict = {}
2821 self.projectElement = ElementTree().parse(filename)
2821 self.projectElement = ElementTree().parse(filename)
2822 self.project = self.projectElement.tag
2822 self.project = self.projectElement.tag
2823
2823
2824 parmElementList = self.projectElement.getiterator(ParameterConf().getElementName())
2824 parmElementList = self.projectElement.getiterator(ParameterConf().getElementName())
2825
2825
2826 for parmElement in parmElementList:
2826 for parmElement in parmElementList:
2827 parmConfObj = ParameterConf()
2827 parmConfObj = ParameterConf()
2828 parmConfObj.readXml(parmElement)
2828 parmConfObj.readXml(parmElement)
2829 self.parmConfObjList.append(parmConfObj)
2829 self.parmConfObjList.append(parmConfObj)
2830
2830
2831 class FitsWriter(Operation):
2831 class FitsWriter(Operation):
2832
2832
2833 def __init__(self):
2833 def __init__(self):
2834 self.isConfig = False
2834 self.isConfig = False
2835 self.dataBlocksPerFile = None
2835 self.dataBlocksPerFile = None
2836 self.blockIndex = 0
2836 self.blockIndex = 0
2837 self.flagIsNewFile = 1
2837 self.flagIsNewFile = 1
2838 self.fitsObj = None
2838 self.fitsObj = None
2839 self.optchar = 'P'
2839 self.optchar = 'P'
2840 self.ext = '.fits'
2840 self.ext = '.fits'
2841 self.setFile = 0
2841 self.setFile = 0
2842
2842
2843 def setFitsHeader(self, dataOut, metadatafile):
2843 def setFitsHeader(self, dataOut, metadatafile):
2844
2844
2845 header_data = pyfits.PrimaryHDU()
2845 header_data = pyfits.PrimaryHDU()
2846
2846
2847 metadata4fits = Metadata(metadatafile)
2847 metadata4fits = Metadata(metadatafile)
2848 for parameter in metadata4fits.parmConfObjList:
2848 for parameter in metadata4fits.parmConfObjList:
2849 parm_name = parameter.name
2849 parm_name = parameter.name
2850 parm_value = parameter.value
2850 parm_value = parameter.value
2851
2851
2852 # if parm_value == 'fromdatadatetime':
2852 # if parm_value == 'fromdatadatetime':
2853 # value = time.strftime("%b %d %Y %H:%M:%S", dataOut.datatime.timetuple())
2853 # value = time.strftime("%b %d %Y %H:%M:%S", dataOut.datatime.timetuple())
2854 # elif parm_value == 'fromdataheights':
2854 # elif parm_value == 'fromdataheights':
2855 # value = dataOut.nHeights
2855 # value = dataOut.nHeights
2856 # elif parm_value == 'fromdatachannel':
2856 # elif parm_value == 'fromdatachannel':
2857 # value = dataOut.nChannels
2857 # value = dataOut.nChannels
2858 # elif parm_value == 'fromdatasamples':
2858 # elif parm_value == 'fromdatasamples':
2859 # value = dataOut.nFFTPoints
2859 # value = dataOut.nFFTPoints
2860 # else:
2860 # else:
2861 # value = parm_value
2861 # value = parm_value
2862
2862
2863 header_data.header[parm_name] = parm_value
2863 header_data.header[parm_name] = parm_value
2864
2864
2865
2865
2866 header_data.header['DATETIME'] = time.strftime("%b %d %Y %H:%M:%S", dataOut.datatime.timetuple())
2866 header_data.header['DATETIME'] = time.strftime("%b %d %Y %H:%M:%S", dataOut.datatime.timetuple())
2867 header_data.header['CHANNELLIST'] = str(dataOut.channelList)
2867 header_data.header['CHANNELLIST'] = str(dataOut.channelList)
2868 header_data.header['NCHANNELS'] = dataOut.nChannels
2868 header_data.header['NCHANNELS'] = dataOut.nChannels
2869 #header_data.header['HEIGHTS'] = dataOut.heightList
2869 #header_data.header['HEIGHTS'] = dataOut.heightList
2870 header_data.header['NHEIGHTS'] = dataOut.nHeights
2870 header_data.header['NHEIGHTS'] = dataOut.nHeights
2871
2871
2872 header_data.header['IPPSECONDS'] = dataOut.ippSeconds
2872 header_data.header['IPPSECONDS'] = dataOut.ippSeconds
2873 header_data.header['NCOHINT'] = dataOut.nCohInt
2873 header_data.header['NCOHINT'] = dataOut.nCohInt
2874 header_data.header['NINCOHINT'] = dataOut.nIncohInt
2874 header_data.header['NINCOHINT'] = dataOut.nIncohInt
2875 header_data.header['TIMEZONE'] = dataOut.timeZone
2875 header_data.header['TIMEZONE'] = dataOut.timeZone
2876 header_data.header['NBLOCK'] = self.blockIndex
2876 header_data.header['NBLOCK'] = self.blockIndex
2877
2877
2878 header_data.writeto(self.filename)
2878 header_data.writeto(self.filename)
2879
2879
2880 self.addExtension(dataOut.heightList,'HEIGHTLIST')
2880 self.addExtension(dataOut.heightList,'HEIGHTLIST')
2881
2881
2882
2882
2883 def setup(self, dataOut, path, dataBlocksPerFile, metadatafile):
2883 def setup(self, dataOut, path, dataBlocksPerFile, metadatafile):
2884
2884
2885 self.path = path
2885 self.path = path
2886 self.dataOut = dataOut
2886 self.dataOut = dataOut
2887 self.metadatafile = metadatafile
2887 self.metadatafile = metadatafile
2888 self.dataBlocksPerFile = dataBlocksPerFile
2888 self.dataBlocksPerFile = dataBlocksPerFile
2889
2889
2890 def open(self):
2890 def open(self):
2891 self.fitsObj = pyfits.open(self.filename, mode='update')
2891 self.fitsObj = pyfits.open(self.filename, mode='update')
2892
2892
2893
2893
2894 def addExtension(self, data, tagname):
2894 def addExtension(self, data, tagname):
2895 self.open()
2895 self.open()
2896 extension = pyfits.ImageHDU(data=data, name=tagname)
2896 extension = pyfits.ImageHDU(data=data, name=tagname)
2897 #extension.header['TAG'] = tagname
2897 #extension.header['TAG'] = tagname
2898 self.fitsObj.append(extension)
2898 self.fitsObj.append(extension)
2899 self.write()
2899 self.write()
2900
2900
2901 def addData(self, data):
2901 def addData(self, data):
2902 self.open()
2902 self.open()
2903 extension = pyfits.ImageHDU(data=data, name=self.fitsObj[0].header['DATATYPE'])
2903 extension = pyfits.ImageHDU(data=data, name=self.fitsObj[0].header['DATATYPE'])
2904 extension.header['UTCTIME'] = self.dataOut.utctime
2904 extension.header['UTCTIME'] = self.dataOut.utctime
2905 self.fitsObj.append(extension)
2905 self.fitsObj.append(extension)
2906 self.blockIndex += 1
2906 self.blockIndex += 1
2907 self.fitsObj[0].header['NBLOCK'] = self.blockIndex
2907 self.fitsObj[0].header['NBLOCK'] = self.blockIndex
2908
2908
2909 self.write()
2909 self.write()
2910
2910
2911 def write(self):
2911 def write(self):
2912
2912
2913 self.fitsObj.flush(verbose=True)
2913 self.fitsObj.flush(verbose=True)
2914 self.fitsObj.close()
2914 self.fitsObj.close()
2915
2915
2916
2916
2917 def setNextFile(self):
2917 def setNextFile(self):
2918
2918
2919 ext = self.ext
2919 ext = self.ext
2920 path = self.path
2920 path = self.path
2921
2921
2922 timeTuple = time.localtime( self.dataOut.utctime)
2922 timeTuple = time.localtime( self.dataOut.utctime)
2923 subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday)
2923 subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday)
2924
2924
2925 fullpath = os.path.join( path, subfolder )
2925 fullpath = os.path.join( path, subfolder )
2926 if not( os.path.exists(fullpath) ):
2926 if not( os.path.exists(fullpath) ):
2927 os.mkdir(fullpath)
2927 os.mkdir(fullpath)
2928 self.setFile = -1 #inicializo mi contador de seteo
2928 self.setFile = -1 #inicializo mi contador de seteo
2929 else:
2929 else:
2930 filesList = os.listdir( fullpath )
2930 filesList = os.listdir( fullpath )
2931 if len( filesList ) > 0:
2931 if len( filesList ) > 0:
2932 filesList = sorted( filesList, key=str.lower )
2932 filesList = sorted( filesList, key=str.lower )
2933 filen = filesList[-1]
2933 filen = filesList[-1]
2934
2934
2935 if isNumber( filen[8:11] ):
2935 if isNumber( filen[8:11] ):
2936 self.setFile = int( filen[8:11] ) #inicializo mi contador de seteo al seteo del ultimo file
2936 self.setFile = int( filen[8:11] ) #inicializo mi contador de seteo al seteo del ultimo file
2937 else:
2937 else:
2938 self.setFile = -1
2938 self.setFile = -1
2939 else:
2939 else:
2940 self.setFile = -1 #inicializo mi contador de seteo
2940 self.setFile = -1 #inicializo mi contador de seteo
2941
2941
2942 setFile = self.setFile
2942 setFile = self.setFile
2943 setFile += 1
2943 setFile += 1
2944
2944
2945 file = '%s%4.4d%3.3d%3.3d%s' % (self.optchar,
2945 file = '%s%4.4d%3.3d%3.3d%s' % (self.optchar,
2946 timeTuple.tm_year,
2946 timeTuple.tm_year,
2947 timeTuple.tm_yday,
2947 timeTuple.tm_yday,
2948 setFile,
2948 setFile,
2949 ext )
2949 ext )
2950
2950
2951 filename = os.path.join( path, subfolder, file )
2951 filename = os.path.join( path, subfolder, file )
2952
2952
2953 self.blockIndex = 0
2953 self.blockIndex = 0
2954 self.filename = filename
2954 self.filename = filename
2955 self.setFile = setFile
2955 self.setFile = setFile
2956 self.flagIsNewFile = 1
2956 self.flagIsNewFile = 1
2957
2957
2958 print 'Writing the file: %s'%self.filename
2958 print 'Writing the file: %s'%self.filename
2959
2959
2960 self.setFitsHeader(self.dataOut, self.metadatafile)
2960 self.setFitsHeader(self.dataOut, self.metadatafile)
2961
2961
2962 return 1
2962 return 1
2963
2963
2964 def writeBlock(self):
2964 def writeBlock(self):
2965 self.addData(self.dataOut.data_spc)
2965 self.addData(self.dataOut.data_spc)
2966 self.flagIsNewFile = 0
2966 self.flagIsNewFile = 0
2967
2967
2968
2968
2969 def __setNewBlock(self):
2969 def __setNewBlock(self):
2970
2970
2971 if self.flagIsNewFile:
2971 if self.flagIsNewFile:
2972 return 1
2972 return 1
2973
2973
2974 if self.blockIndex < self.dataBlocksPerFile:
2974 if self.blockIndex < self.dataBlocksPerFile:
2975 return 1
2975 return 1
2976
2976
2977 if not( self.setNextFile() ):
2977 if not( self.setNextFile() ):
2978 return 0
2978 return 0
2979
2979
2980 return 1
2980 return 1
2981
2981
2982 def writeNextBlock(self):
2982 def writeNextBlock(self):
2983 if not( self.__setNewBlock() ):
2983 if not( self.__setNewBlock() ):
2984 return 0
2984 return 0
2985 self.writeBlock()
2985 self.writeBlock()
2986 return 1
2986 return 1
2987
2987
2988 def putData(self):
2988 def putData(self):
2989 if self.flagIsNewFile:
2989 if self.flagIsNewFile:
2990 self.setNextFile()
2990 self.setNextFile()
2991 self.writeNextBlock()
2991 self.writeNextBlock()
2992
2992
2993 def run(self, dataOut, **kwargs):
2993 def run(self, dataOut, **kwargs):
2994 if not(self.isConfig):
2994 if not(self.isConfig):
2995 self.setup(dataOut, **kwargs)
2995 self.setup(dataOut, **kwargs)
2996 self.isConfig = True
2996 self.isConfig = True
2997 self.putData()
2997 self.putData()
2998
2998
2999
2999
3000 class FitsReader(ProcessingUnit):
3000 class FitsReader(ProcessingUnit):
3001
3001
3002 # __TIMEZONE = time.timezone
3002 # __TIMEZONE = time.timezone
3003
3003
3004 expName = None
3004 expName = None
3005 datetimestr = None
3005 datetimestr = None
3006 utc = None
3006 utc = None
3007 nChannels = None
3007 nChannels = None
3008 nSamples = None
3008 nSamples = None
3009 dataBlocksPerFile = None
3009 dataBlocksPerFile = None
3010 comments = None
3010 comments = None
3011 lastUTTime = None
3011 lastUTTime = None
3012 header_dict = None
3012 header_dict = None
3013 data = None
3013 data = None
3014 data_header_dict = None
3014 data_header_dict = None
3015
3015
3016 def __init__(self):
3016 def __init__(self):
3017 self.isConfig = False
3017 self.isConfig = False
3018 self.ext = '.fits'
3018 self.ext = '.fits'
3019 self.setFile = 0
3019 self.setFile = 0
3020 self.flagNoMoreFiles = 0
3020 self.flagNoMoreFiles = 0
3021 self.flagIsNewFile = 1
3021 self.flagIsNewFile = 1
3022 self.flagTimeBlock = None
3022 self.flagTimeBlock = None
3023 self.fileIndex = None
3023 self.fileIndex = None
3024 self.filename = None
3024 self.filename = None
3025 self.fileSize = None
3025 self.fileSize = None
3026 self.fitsObj = None
3026 self.fitsObj = None
3027 self.timeZone = None
3027 self.timeZone = None
3028 self.nReadBlocks = 0
3028 self.nReadBlocks = 0
3029 self.nTotalBlocks = 0
3029 self.nTotalBlocks = 0
3030 self.dataOut = self.createObjByDefault()
3030 self.dataOut = self.createObjByDefault()
3031 self.maxTimeStep = 10# deberia ser definido por el usuario usando el metodo setup()
3031 self.maxTimeStep = 10# deberia ser definido por el usuario usando el metodo setup()
3032 self.blockIndex = 1
3032 self.blockIndex = 1
3033
3033
3034 def createObjByDefault(self):
3034 def createObjByDefault(self):
3035
3035
3036 dataObj = Fits()
3036 dataObj = Fits()
3037
3037
3038 return dataObj
3038 return dataObj
3039
3039
3040 def isFileinThisTime(self, filename, startTime, endTime, useLocalTime=False):
3040 def isFileinThisTime(self, filename, startTime, endTime, useLocalTime=False):
3041 try:
3041 try:
3042 fitsObj = pyfits.open(filename,'readonly')
3042 fitsObj = pyfits.open(filename,'readonly')
3043 except:
3043 except:
3044 raise IOError, "The file %s can't be opened" %(filename)
3044 raise IOError, "The file %s can't be opened" %(filename)
3045
3045
3046 header = fitsObj[0].header
3046 header = fitsObj[0].header
3047 struct_time = time.strptime(header['DATETIME'], "%b %d %Y %H:%M:%S")
3047 struct_time = time.strptime(header['DATETIME'], "%b %d %Y %H:%M:%S")
3048 utc = time.mktime(struct_time) - time.timezone #TIMEZONE debe ser un parametro del header FITS
3048 utc = time.mktime(struct_time) - time.timezone #TIMEZONE debe ser un parametro del header FITS
3049
3049
3050 ltc = utc
3050 ltc = utc
3051 if useLocalTime:
3051 if useLocalTime:
3052 ltc -= time.timezone
3052 ltc -= time.timezone
3053 thisDatetime = datetime.datetime.utcfromtimestamp(ltc)
3053 thisDatetime = datetime.datetime.utcfromtimestamp(ltc)
3054 thisTime = thisDatetime.time()
3054 thisTime = thisDatetime.time()
3055
3055
3056 if not ((startTime <= thisTime) and (endTime > thisTime)):
3056 if not ((startTime <= thisTime) and (endTime > thisTime)):
3057 return None
3057 return None
3058
3058
3059 return thisDatetime
3059 return thisDatetime
3060
3060
3061 def __setNextFileOnline(self):
3061 def __setNextFileOnline(self):
3062 raise ValueError, "No implemented"
3062 raise ValueError, "No implemented"
3063
3063
3064 def __setNextFileOffline(self):
3064 def __setNextFileOffline(self):
3065 idFile = self.fileIndex
3065 idFile = self.fileIndex
3066
3066
3067 while (True):
3067 while (True):
3068 idFile += 1
3068 idFile += 1
3069 if not(idFile < len(self.filenameList)):
3069 if not(idFile < len(self.filenameList)):
3070 self.flagNoMoreFiles = 1
3070 self.flagNoMoreFiles = 1
3071 print "No more Files"
3071 print "No more Files"
3072 return 0
3072 return 0
3073
3073
3074 filename = self.filenameList[idFile]
3074 filename = self.filenameList[idFile]
3075
3075
3076 # if not(self.__verifyFile(filename)):
3076 # if not(self.__verifyFile(filename)):
3077 # continue
3077 # continue
3078
3078
3079 fileSize = os.path.getsize(filename)
3079 fileSize = os.path.getsize(filename)
3080 fitsObj = pyfits.open(filename,'readonly')
3080 fitsObj = pyfits.open(filename,'readonly')
3081 break
3081 break
3082
3082
3083 self.flagIsNewFile = 1
3083 self.flagIsNewFile = 1
3084 self.fileIndex = idFile
3084 self.fileIndex = idFile
3085 self.filename = filename
3085 self.filename = filename
3086 self.fileSize = fileSize
3086 self.fileSize = fileSize
3087 self.fitsObj = fitsObj
3087 self.fitsObj = fitsObj
3088 self.blockIndex = 0
3088 self.blockIndex = 0
3089 print "Setting the file: %s"%self.filename
3089 print "Setting the file: %s"%self.filename
3090
3090
3091 return 1
3091 return 1
3092
3092
3093 def readHeader(self):
3093 def readHeader(self):
3094 headerObj = self.fitsObj[0]
3094 headerObj = self.fitsObj[0]
3095
3095
3096 self.header_dict = headerObj.header
3096 self.header_dict = headerObj.header
3097 if 'EXPNAME' in headerObj.header.keys():
3097 if 'EXPNAME' in headerObj.header.keys():
3098 self.expName = headerObj.header['EXPNAME']
3098 self.expName = headerObj.header['EXPNAME']
3099
3099
3100 if 'DATATYPE' in headerObj.header.keys():
3100 if 'DATATYPE' in headerObj.header.keys():
3101 self.dataType = headerObj.header['DATATYPE']
3101 self.dataType = headerObj.header['DATATYPE']
3102
3102
3103 self.datetimestr = headerObj.header['DATETIME']
3103 self.datetimestr = headerObj.header['DATETIME']
3104 channelList = headerObj.header['CHANNELLIST']
3104 channelList = headerObj.header['CHANNELLIST']
3105 channelList = channelList.split('[')
3105 channelList = channelList.split('[')
3106 channelList = channelList[1].split(']')
3106 channelList = channelList[1].split(']')
3107 channelList = channelList[0].split(',')
3107 channelList = channelList[0].split(',')
3108 channelList = [int(ch) for ch in channelList]
3108 channelList = [int(ch) for ch in channelList]
3109 self.channelList = channelList
3109 self.channelList = channelList
3110 self.nChannels = headerObj.header['NCHANNELS']
3110 self.nChannels = headerObj.header['NCHANNELS']
3111 self.nHeights = headerObj.header['NHEIGHTS']
3111 self.nHeights = headerObj.header['NHEIGHTS']
3112 self.ippSeconds = headerObj.header['IPPSECONDS']
3112 self.ippSeconds = headerObj.header['IPPSECONDS']
3113 self.nCohInt = headerObj.header['NCOHINT']
3113 self.nCohInt = headerObj.header['NCOHINT']
3114 self.nIncohInt = headerObj.header['NINCOHINT']
3114 self.nIncohInt = headerObj.header['NINCOHINT']
3115 self.dataBlocksPerFile = headerObj.header['NBLOCK']
3115 self.dataBlocksPerFile = headerObj.header['NBLOCK']
3116 self.timeZone = headerObj.header['TIMEZONE']
3116 self.timeZone = headerObj.header['TIMEZONE']
3117
3117
3118 self.timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt
3118 self.timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt
3119
3119
3120 if 'COMMENT' in headerObj.header.keys():
3120 if 'COMMENT' in headerObj.header.keys():
3121 self.comments = headerObj.header['COMMENT']
3121 self.comments = headerObj.header['COMMENT']
3122
3122
3123 self.readHeightList()
3123 self.readHeightList()
3124
3124
3125 def readHeightList(self):
3125 def readHeightList(self):
3126 self.blockIndex = self.blockIndex + 1
3126 self.blockIndex = self.blockIndex + 1
3127 obj = self.fitsObj[self.blockIndex]
3127 obj = self.fitsObj[self.blockIndex]
3128 self.heightList = obj.data
3128 self.heightList = obj.data
3129 self.blockIndex = self.blockIndex + 1
3129 self.blockIndex = self.blockIndex + 1
3130
3130
3131 def readExtension(self):
3131 def readExtension(self):
3132 obj = self.fitsObj[self.blockIndex]
3132 obj = self.fitsObj[self.blockIndex]
3133 self.heightList = obj.data
3133 self.heightList = obj.data
3134 self.blockIndex = self.blockIndex + 1
3134 self.blockIndex = self.blockIndex + 1
3135
3135
3136 def setNextFile(self):
3136 def setNextFile(self):
3137
3137
3138 if self.online:
3138 if self.online:
3139 newFile = self.__setNextFileOnline()
3139 newFile = self.__setNextFileOnline()
3140 else:
3140 else:
3141 newFile = self.__setNextFileOffline()
3141 newFile = self.__setNextFileOffline()
3142
3142
3143 if not(newFile):
3143 if not(newFile):
3144 return 0
3144 return 0
3145
3145
3146 self.readHeader()
3146 self.readHeader()
3147
3147
3148 self.nReadBlocks = 0
3148 self.nReadBlocks = 0
3149 # self.blockIndex = 1
3149 # self.blockIndex = 1
3150 return 1
3150 return 1
3151
3151
3152 def __searchFilesOffLine(self,
3152 def __searchFilesOffLine(self,
3153 path,
3153 path,
3154 startDate,
3154 startDate,
3155 endDate,
3155 endDate,
3156 startTime=datetime.time(0,0,0),
3156 startTime=datetime.time(0,0,0),
3157 endTime=datetime.time(23,59,59),
3157 endTime=datetime.time(23,59,59),
3158 set=None,
3158 set=None,
3159 expLabel='',
3159 expLabel='',
3160 ext='.fits',
3160 ext='.fits',
3161 walk=True):
3161 walk=True):
3162
3162
3163 pathList = []
3163 pathList = []
3164
3164
3165 if not walk:
3165 if not walk:
3166 pathList.append(path)
3166 pathList.append(path)
3167
3167
3168 else:
3168 else:
3169 dirList = []
3169 dirList = []
3170 for thisPath in os.listdir(path):
3170 for thisPath in os.listdir(path):
3171 if not os.path.isdir(os.path.join(path,thisPath)):
3171 if not os.path.isdir(os.path.join(path,thisPath)):
3172 continue
3172 continue
3173 if not isDoyFolder(thisPath):
3173 if not isDoyFolder(thisPath):
3174 continue
3174 continue
3175
3175
3176 dirList.append(thisPath)
3176 dirList.append(thisPath)
3177
3177
3178 if not(dirList):
3178 if not(dirList):
3179 return None, None
3179 return None, None
3180
3180
3181 thisDate = startDate
3181 thisDate = startDate
3182
3182
3183 while(thisDate <= endDate):
3183 while(thisDate <= endDate):
3184 year = thisDate.timetuple().tm_year
3184 year = thisDate.timetuple().tm_year
3185 doy = thisDate.timetuple().tm_yday
3185 doy = thisDate.timetuple().tm_yday
3186
3186
3187 matchlist = fnmatch.filter(dirList, '?' + '%4.4d%3.3d' % (year,doy) + '*')
3187 matchlist = fnmatch.filter(dirList, '?' + '%4.4d%3.3d' % (year,doy) + '*')
3188 if len(matchlist) == 0:
3188 if len(matchlist) == 0:
3189 thisDate += datetime.timedelta(1)
3189 thisDate += datetime.timedelta(1)
3190 continue
3190 continue
3191 for match in matchlist:
3191 for match in matchlist:
3192 pathList.append(os.path.join(path,match,expLabel))
3192 pathList.append(os.path.join(path,match,expLabel))
3193
3193
3194 thisDate += datetime.timedelta(1)
3194 thisDate += datetime.timedelta(1)
3195
3195
3196 if pathList == []:
3196 if pathList == []:
3197 print "Any folder was found for the date range: %s-%s" %(startDate, endDate)
3197 print "Any folder was found for the date range: %s-%s" %(startDate, endDate)
3198 return None, None
3198 return None, None
3199
3199
3200 print "%d folder(s) was(were) found for the date range: %s - %s" %(len(pathList), startDate, endDate)
3200 print "%d folder(s) was(were) found for the date range: %s - %s" %(len(pathList), startDate, endDate)
3201
3201
3202 filenameList = []
3202 filenameList = []
3203 datetimeList = []
3203 datetimeList = []
3204
3204
3205 for i in range(len(pathList)):
3205 for i in range(len(pathList)):
3206
3206
3207 thisPath = pathList[i]
3207 thisPath = pathList[i]
3208
3208
3209 fileList = glob.glob1(thisPath, "*%s" %ext)
3209 fileList = glob.glob1(thisPath, "*%s" %ext)
3210 fileList.sort()
3210 fileList.sort()
3211
3211
3212 for file in fileList:
3212 for file in fileList:
3213
3213
3214 filename = os.path.join(thisPath,file)
3214 filename = os.path.join(thisPath,file)
3215 thisDatetime = self.isFileinThisTime(filename, startTime, endTime)
3215 thisDatetime = self.isFileinThisTime(filename, startTime, endTime)
3216
3216
3217 if not(thisDatetime):
3217 if not(thisDatetime):
3218 continue
3218 continue
3219
3219
3220 filenameList.append(filename)
3220 filenameList.append(filename)
3221 datetimeList.append(thisDatetime)
3221 datetimeList.append(thisDatetime)
3222
3222
3223 if not(filenameList):
3223 if not(filenameList):
3224 print "Any file was found for the time range %s - %s" %(startTime, endTime)
3224 print "Any file was found for the time range %s - %s" %(startTime, endTime)
3225 return None, None
3225 return None, None
3226
3226
3227 print "%d file(s) was(were) found for the time range: %s - %s" %(len(filenameList), startTime, endTime)
3227 print "%d file(s) was(were) found for the time range: %s - %s" %(len(filenameList), startTime, endTime)
3228 print
3228 print
3229
3229
3230 for i in range(len(filenameList)):
3230 for i in range(len(filenameList)):
3231 print "%s -> [%s]" %(filenameList[i], datetimeList[i].ctime())
3231 print "%s -> [%s]" %(filenameList[i], datetimeList[i].ctime())
3232
3232
3233 self.filenameList = filenameList
3233 self.filenameList = filenameList
3234 self.datetimeList = datetimeList
3234 self.datetimeList = datetimeList
3235
3235
3236 return pathList, filenameList
3236 return pathList, filenameList
3237
3237
3238 def setup(self, path=None,
3238 def setup(self, path=None,
3239 startDate=None,
3239 startDate=None,
3240 endDate=None,
3240 endDate=None,
3241 startTime=datetime.time(0,0,0),
3241 startTime=datetime.time(0,0,0),
3242 endTime=datetime.time(23,59,59),
3242 endTime=datetime.time(23,59,59),
3243 set=0,
3243 set=0,
3244 expLabel = "",
3244 expLabel = "",
3245 ext = None,
3245 ext = None,
3246 online = False,
3246 online = False,
3247 delay = 60,
3247 delay = 60,
3248 walk = True):
3248 walk = True):
3249
3249
3250 if path == None:
3250 if path == None:
3251 raise ValueError, "The path is not valid"
3251 raise ValueError, "The path is not valid"
3252
3252
3253 if ext == None:
3253 if ext == None:
3254 ext = self.ext
3254 ext = self.ext
3255
3255
3256 if not(online):
3256 if not(online):
3257 print "Searching files in offline mode ..."
3257 print "Searching files in offline mode ..."
3258 pathList, filenameList = self.__searchFilesOffLine(path, startDate=startDate, endDate=endDate,
3258 pathList, filenameList = self.__searchFilesOffLine(path, startDate=startDate, endDate=endDate,
3259 startTime=startTime, endTime=endTime,
3259 startTime=startTime, endTime=endTime,
3260 set=set, expLabel=expLabel, ext=ext,
3260 set=set, expLabel=expLabel, ext=ext,
3261 walk=walk)
3261 walk=walk)
3262
3262
3263 if not(pathList):
3263 if not(pathList):
3264 print "No *%s files into the folder %s \nfor the range: %s - %s"%(ext, path,
3264 print "No *%s files into the folder %s \nfor the range: %s - %s"%(ext, path,
3265 datetime.datetime.combine(startDate,startTime).ctime(),
3265 datetime.datetime.combine(startDate,startTime).ctime(),
3266 datetime.datetime.combine(endDate,endTime).ctime())
3266 datetime.datetime.combine(endDate,endTime).ctime())
3267
3267
3268 sys.exit(-1)
3268 sys.exit(-1)
3269
3269
3270 self.fileIndex = -1
3270 self.fileIndex = -1
3271 self.pathList = pathList
3271 self.pathList = pathList
3272 self.filenameList = filenameList
3272 self.filenameList = filenameList
3273
3273
3274 self.online = online
3274 self.online = online
3275 self.delay = delay
3275 self.delay = delay
3276 ext = ext.lower()
3276 ext = ext.lower()
3277 self.ext = ext
3277 self.ext = ext
3278
3278
3279 if not(self.setNextFile()):
3279 if not(self.setNextFile()):
3280 if (startDate!=None) and (endDate!=None):
3280 if (startDate!=None) and (endDate!=None):
3281 print "No files in range: %s - %s" %(datetime.datetime.combine(startDate,startTime).ctime(), datetime.datetime.combine(endDate,endTime).ctime())
3281 print "No files in range: %s - %s" %(datetime.datetime.combine(startDate,startTime).ctime(), datetime.datetime.combine(endDate,endTime).ctime())
3282 elif startDate != None:
3282 elif startDate != None:
3283 print "No files in range: %s" %(datetime.datetime.combine(startDate,startTime).ctime())
3283 print "No files in range: %s" %(datetime.datetime.combine(startDate,startTime).ctime())
3284 else:
3284 else:
3285 print "No files"
3285 print "No files"
3286
3286
3287 sys.exit(-1)
3287 sys.exit(-1)
3288
3288
3289
3289
3290
3290
3291 def readBlock(self):
3291 def readBlock(self):
3292 dataObj = self.fitsObj[self.blockIndex]
3292 dataObj = self.fitsObj[self.blockIndex]
3293
3293
3294 self.data = dataObj.data
3294 self.data = dataObj.data
3295 self.data_header_dict = dataObj.header
3295 self.data_header_dict = dataObj.header
3296 self.utc = self.data_header_dict['UTCTIME']
3296 self.utc = self.data_header_dict['UTCTIME']
3297
3297
3298 self.flagIsNewFile = 0
3298 self.flagIsNewFile = 0
3299 self.blockIndex += 1
3299 self.blockIndex += 1
3300 self.nTotalBlocks += 1
3300 self.nTotalBlocks += 1
3301 self.nReadBlocks += 1
3301 self.nReadBlocks += 1
3302
3302
3303 return 1
3303 return 1
3304
3304
3305 def __jumpToLastBlock(self):
3305 def __jumpToLastBlock(self):
3306 raise ValueError, "No implemented"
3306 raise ValueError, "No implemented"
3307
3307
3308 def __waitNewBlock(self):
3308 def __waitNewBlock(self):
3309 """
3309 """
3310 Return 1 si se encontro un nuevo bloque de datos, 0 de otra forma.
3310 Return 1 si se encontro un nuevo bloque de datos, 0 de otra forma.
3311
3311
3312 Si el modo de lectura es OffLine siempre retorn 0
3312 Si el modo de lectura es OffLine siempre retorn 0
3313 """
3313 """
3314 if not self.online:
3314 if not self.online:
3315 return 0
3315 return 0
3316
3316
3317 if (self.nReadBlocks >= self.dataBlocksPerFile):
3317 if (self.nReadBlocks >= self.dataBlocksPerFile):
3318 return 0
3318 return 0
3319
3319
3320 currentPointer = self.fp.tell()
3320 currentPointer = self.fp.tell()
3321
3321
3322 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
3322 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
3323
3323
3324 for nTries in range( self.nTries ):
3324 for nTries in range( self.nTries ):
3325
3325
3326 self.fp.close()
3326 self.fp.close()
3327 self.fp = open( self.filename, 'rb' )
3327 self.fp = open( self.filename, 'rb' )
3328 self.fp.seek( currentPointer )
3328 self.fp.seek( currentPointer )
3329
3329
3330 self.fileSize = os.path.getsize( self.filename )
3330 self.fileSize = os.path.getsize( self.filename )
3331 currentSize = self.fileSize - currentPointer
3331 currentSize = self.fileSize - currentPointer
3332
3332
3333 if ( currentSize >= neededSize ):
3333 if ( currentSize >= neededSize ):
3334 self.__rdBasicHeader()
3334 self.__rdBasicHeader()
3335 return 1
3335 return 1
3336
3336
3337 print "\tWaiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
3337 print "\tWaiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
3338 time.sleep( self.delay )
3338 time.sleep( self.delay )
3339
3339
3340
3340
3341 return 0
3341 return 0
3342
3342
3343 def __setNewBlock(self):
3343 def __setNewBlock(self):
3344
3344
3345 if self.online:
3345 if self.online:
3346 self.__jumpToLastBlock()
3346 self.__jumpToLastBlock()
3347
3347
3348 if self.flagIsNewFile:
3348 if self.flagIsNewFile:
3349 return 1
3349 return 1
3350
3350
3351 self.lastUTTime = self.utc
3351 self.lastUTTime = self.utc
3352
3352
3353 if self.online:
3353 if self.online:
3354 if self.__waitNewBlock():
3354 if self.__waitNewBlock():
3355 return 1
3355 return 1
3356
3356
3357 if self.nReadBlocks < self.dataBlocksPerFile:
3357 if self.nReadBlocks < self.dataBlocksPerFile:
3358 return 1
3358 return 1
3359
3359
3360 if not(self.setNextFile()):
3360 if not(self.setNextFile()):
3361 return 0
3361 return 0
3362
3362
3363 deltaTime = self.utc - self.lastUTTime
3363 deltaTime = self.utc - self.lastUTTime
3364
3364
3365 self.flagTimeBlock = 0
3365 self.flagTimeBlock = 0
3366
3366
3367 if deltaTime > self.maxTimeStep:
3367 if deltaTime > self.maxTimeStep:
3368 self.flagTimeBlock = 1
3368 self.flagTimeBlock = 1
3369
3369
3370 return 1
3370 return 1
3371
3371
3372
3372
3373 def readNextBlock(self):
3373 def readNextBlock(self):
3374 if not(self.__setNewBlock()):
3374 if not(self.__setNewBlock()):
3375 return 0
3375 return 0
3376
3376
3377 if not(self.readBlock()):
3377 if not(self.readBlock()):
3378 return 0
3378 return 0
3379
3379
3380 return 1
3380 return 1
3381
3381
3382
3382
3383 def getData(self):
3383 def getData(self):
3384
3384
3385 if self.flagNoMoreFiles:
3385 if self.flagNoMoreFiles:
3386 self.dataOut.flagNoData = True
3386 self.dataOut.flagNoData = True
3387 print 'Process finished'
3387 print 'Process finished'
3388 return 0
3388 return 0
3389
3389
3390 self.flagTimeBlock = 0
3390 self.flagTimeBlock = 0
3391 self.flagIsNewBlock = 0
3391 self.flagIsNewBlock = 0
3392
3392
3393 if not(self.readNextBlock()):
3393 if not(self.readNextBlock()):
3394 return 0
3394 return 0
3395
3395
3396 if self.data == None:
3396 if self.data == None:
3397 self.dataOut.flagNoData = True
3397 self.dataOut.flagNoData = True
3398 return 0
3398 return 0
3399
3399
3400 self.dataOut.data = self.data
3400 self.dataOut.data = self.data
3401 self.dataOut.data_header = self.data_header_dict
3401 self.dataOut.data_header = self.data_header_dict
3402 self.dataOut.utctime = self.utc
3402 self.dataOut.utctime = self.utc
3403
3403
3404 self.dataOut.header = self.header_dict
3404 self.dataOut.header = self.header_dict
3405 self.dataOut.expName = self.expName
3405 self.dataOut.expName = self.expName
3406 self.dataOut.nChannels = self.nChannels
3406 self.dataOut.nChannels = self.nChannels
3407 self.dataOut.timeZone = self.timeZone
3407 self.dataOut.timeZone = self.timeZone
3408 self.dataOut.dataBlocksPerFile = self.dataBlocksPerFile
3408 self.dataOut.dataBlocksPerFile = self.dataBlocksPerFile
3409 self.dataOut.comments = self.comments
3409 self.dataOut.comments = self.comments
3410 self.dataOut.timeInterval = self.timeInterval
3410 self.dataOut.timeInterval = self.timeInterval
3411 self.dataOut.channelList = self.channelList
3411 self.dataOut.channelList = self.channelList
3412 self.dataOut.heightList = self.heightList
3412 self.dataOut.heightList = self.heightList
3413 self.dataOut.flagNoData = False
3413 self.dataOut.flagNoData = False
3414
3414
3415 return self.dataOut.data
3415 return self.dataOut.data
3416
3416
3417 def run(self, **kwargs):
3417 def run(self, **kwargs):
3418
3418
3419 if not(self.isConfig):
3419 if not(self.isConfig):
3420 self.setup(**kwargs)
3420 self.setup(**kwargs)
3421 self.isConfig = True
3421 self.isConfig = True
3422
3422
3423 self.getData()
3423 self.getData()
3424
3424
3425
3425
3426 class RadacHeader():
3426 class RadacHeader():
3427 def __init__(self, fp):
3427 def __init__(self, fp):
3428 header = 'Raw11/Data/RadacHeader'
3428 header = 'Raw11/Data/RadacHeader'
3429 self.beamCodeByPulse = fp.get(header+'/BeamCode')
3429 self.beamCodeByPulse = fp.get(header+'/BeamCode')
3430 self.beamCode = fp.get('Raw11/Data/Beamcodes')
3430 self.beamCode = fp.get('Raw11/Data/Beamcodes')
3431 self.code = fp.get(header+'/Code')
3431 self.code = fp.get(header+'/Code')
3432 self.frameCount = fp.get(header+'/FrameCount')
3432 self.frameCount = fp.get(header+'/FrameCount')
3433 self.modeGroup = fp.get(header+'/ModeGroup')
3433 self.modeGroup = fp.get(header+'/ModeGroup')
3434 self.nsamplesPulse = fp.get(header+'/NSamplesPulse')
3434 self.nsamplesPulse = fp.get(header+'/NSamplesPulse')
3435 self.pulseCount = fp.get(header+'/PulseCount')
3435 self.pulseCount = fp.get(header+'/PulseCount')
3436 self.radacTime = fp.get(header+'/RadacTime')
3436 self.radacTime = fp.get(header+'/RadacTime')
3437 self.timeCount = fp.get(header+'/TimeCount')
3437 self.timeCount = fp.get(header+'/TimeCount')
3438 self.timeStatus = fp.get(header+'/TimeStatus')
3438 self.timeStatus = fp.get(header+'/TimeStatus')
3439
3439
3440 self.nrecords = self.pulseCount.shape[0] #numero de bloques
3440 self.nrecords = self.pulseCount.shape[0] #numero de bloques
3441 self.npulses = self.pulseCount.shape[1] #numero de perfiles
3441 self.npulses = self.pulseCount.shape[1] #numero de perfiles
3442 self.nsamples = self.nsamplesPulse[0,0] #numero de alturas
3442 self.nsamples = self.nsamplesPulse[0,0] #numero de alturas
3443 self.nbeams = self.beamCode.shape[1] #numero de beams
3443 self.nbeams = self.beamCode.shape[1] #numero de beams
3444
3444
3445
3445
3446 def getIndexRangeToPulse(self, idrecord=0):
3446 def getIndexRangeToPulse(self, idrecord=0):
3447 indexToZero = numpy.where(self.pulseCount.value[idrecord,:]==0)
3447 indexToZero = numpy.where(self.pulseCount.value[idrecord,:]==0)
3448 startPulseCountId = indexToZero[0][0]
3448 startPulseCountId = indexToZero[0][0]
3449 endPulseCountId = startPulseCountId - 1
3449 endPulseCountId = startPulseCountId - 1
3450 range1 = numpy.arange(startPulseCountId,self.npulses,1)
3450 range1 = numpy.arange(startPulseCountId,self.npulses,1)
3451 range2 = numpy.arange(0,startPulseCountId,1)
3451 range2 = numpy.arange(0,startPulseCountId,1)
3452 return range1, range2
3452 return range1, range2
3453
3453
3454
3454
3455 class AMISRReader(ProcessingUnit):
3455 class AMISRReader(ProcessingUnit):
3456
3456
3457 path = None
3457 path = None
3458 startDate = None
3458 startDate = None
3459 endDate = None
3459 endDate = None
3460 startTime = None
3460 startTime = None
3461 endTime = None
3461 endTime = None
3462 walk = None
3462 walk = None
3463 isConfig = False
3463 isConfig = False
3464
3464
3465 def __init__(self):
3465 def __init__(self):
3466 self.set = None
3466 self.set = None
3467 self.subset = None
3467 self.subset = None
3468 self.extension_file = '.h5'
3468 self.extension_file = '.h5'
3469 self.dtc_str = 'dtc'
3469 self.dtc_str = 'dtc'
3470 self.dtc_id = 0
3470 self.dtc_id = 0
3471 self.status = True
3471 self.status = True
3472 self.isConfig = False
3472 self.isConfig = False
3473 self.dirnameList = []
3473 self.dirnameList = []
3474 self.filenameList = []
3474 self.filenameList = []
3475 self.fileIndex = None
3475 self.fileIndex = None
3476 self.flagNoMoreFiles = False
3476 self.flagNoMoreFiles = False
3477 self.flagIsNewFile = 0
3477 self.flagIsNewFile = 0
3478 self.filename = ''
3478 self.filename = ''
3479 self.amisrFilePointer = None
3479 self.amisrFilePointer = None
3480 self.radacHeaderObj = None
3480 self.radacHeaderObj = None
3481 self.dataOut = self.__createObjByDefault()
3481 self.dataOut = self.__createObjByDefault()
3482 self.datablock = None
3482 self.datablock = None
3483 self.rest_datablock = None
3483 self.rest_datablock = None
3484 self.range = None
3484 self.range = None
3485 self.idrecord_count = 0
3485 self.idrecord_count = 0
3486 self.profileIndex = 0
3486 self.profileIndex = 0
3487 self.idpulse_range1 = None
3487 self.idpulse_range1 = None
3488 self.idpulse_range2 = None
3488 self.idpulse_range2 = None
3489 self.beamCodeByFrame = None
3489 self.beamCodeByFrame = None
3490 self.radacTimeByFrame = None
3490 self.radacTimeByFrame = None
3491 #atributos originales tal y como esta en el archivo de datos
3491 #atributos originales tal y como esta en el archivo de datos
3492 self.beamCodesFromFile = None
3492 self.beamCodesFromFile = None
3493 self.radacTimeFromFile = None
3493 self.radacTimeFromFile = None
3494 self.rangeFromFile = None
3494 self.rangeFromFile = None
3495 self.dataByFrame = None
3495 self.dataByFrame = None
3496 self.dataset = None
3496 self.dataset = None
3497
3497
3498 self.beamCodeDict = {}
3498 self.beamCodeDict = {}
3499 self.beamRangeDict = {}
3499 self.beamRangeDict = {}
3500
3500
3501 #experiment cgf file
3501 #experiment cgf file
3502 self.npulsesint_fromfile = None
3502 self.npulsesint_fromfile = None
3503 self.recordsperfile_fromfile = None
3503 self.recordsperfile_fromfile = None
3504 self.nbeamcodes_fromfile = None
3504 self.nbeamcodes_fromfile = None
3505 self.ngates_fromfile = None
3505 self.ngates_fromfile = None
3506 self.ippSeconds_fromfile = None
3506 self.ippSeconds_fromfile = None
3507 self.frequency_h5file = None
3507 self.frequency_h5file = None
3508
3508
3509
3509
3510 def __createObjByDefault(self):
3510 def __createObjByDefault(self):
3511
3511
3512 dataObj = AMISR()
3512 dataObj = AMISR()
3513
3513
3514 return dataObj
3514 return dataObj
3515
3515
3516 def __setParameters(self,path,startDate,endDate,startTime,endTime,walk):
3516 def __setParameters(self,path,startDate,endDate,startTime,endTime,walk):
3517 self.path = path
3517 self.path = path
3518 self.startDate = startDate
3518 self.startDate = startDate
3519 self.endDate = endDate
3519 self.endDate = endDate
3520 self.startTime = startTime
3520 self.startTime = startTime
3521 self.endTime = endTime
3521 self.endTime = endTime
3522 self.walk = walk
3522 self.walk = walk
3523
3523
3524 def __checkPath(self):
3524 def __checkPath(self):
3525 if os.path.exists(self.path):
3525 if os.path.exists(self.path):
3526 self.status = 1
3526 self.status = 1
3527 else:
3527 else:
3528 self.status = 0
3528 self.status = 0
3529 print 'Path:%s does not exists'%self.path
3529 print 'Path:%s does not exists'%self.path
3530
3530
3531 return
3531 return
3532
3532
3533 def __selDates(self, amisr_dirname_format):
3533 def __selDates(self, amisr_dirname_format):
3534 year = int(amisr_dirname_format[0:4])
3534 try:
3535 month = int(amisr_dirname_format[4:6])
3535 year = int(amisr_dirname_format[0:4])
3536 dom = int(amisr_dirname_format[6:8])
3536 month = int(amisr_dirname_format[4:6])
3537 thisDate = datetime.date(year,month,dom)
3537 dom = int(amisr_dirname_format[6:8])
3538
3538 thisDate = datetime.date(year,month,dom)
3539 if (thisDate>=self.startDate and thisDate <= self.endDate):
3539
3540 return amisr_dirname_format
3540 if (thisDate>=self.startDate and thisDate <= self.endDate):
3541 return amisr_dirname_format
3542 except:
3543 return None
3541
3544
3542 def __findDataForDates(self):
3545 def __findDataForDates(self):
3543
3546
3544
3547
3545
3548
3546 if not(self.status):
3549 if not(self.status):
3547 return None
3550 return None
3548
3551
3549 pat = '\d+.\d+'
3552 pat = '\d+.\d+'
3550 dirnameList = [re.search(pat,x).string for x in os.listdir(self.path)]
3553 dirnameList = [re.search(pat,x) for x in os.listdir(self.path)]
3554 dirnameList = filter(lambda x:x!=None,dirnameList)
3555 dirnameList = [x.string for x in dirnameList]
3551 dirnameList = [self.__selDates(x) for x in dirnameList]
3556 dirnameList = [self.__selDates(x) for x in dirnameList]
3552 dirnameList = filter(lambda x:x!=None,dirnameList)
3557 dirnameList = filter(lambda x:x!=None,dirnameList)
3553 if len(dirnameList)>0:
3558 if len(dirnameList)>0:
3554 self.status = 1
3559 self.status = 1
3555 self.dirnameList = dirnameList
3560 self.dirnameList = dirnameList
3556 self.dirnameList.sort()
3561 self.dirnameList.sort()
3557 else:
3562 else:
3558 self.status = 0
3563 self.status = 0
3559 return None
3564 return None
3560
3565
3561 def __getTimeFromData(self):
3566 def __getTimeFromData(self):
3562 pass
3567 pass
3563
3568
3564 def __filterByGlob1(self, dirName):
3569 def __filterByGlob1(self, dirName):
3565 filter_files = glob.glob1(dirName, '*.*%s'%self.extension_file)
3570 filter_files = glob.glob1(dirName, '*.*%s'%self.extension_file)
3566 filterDict = {}
3571 filterDict = {}
3567 filterDict.setdefault(dirName)
3572 filterDict.setdefault(dirName)
3568 filterDict[dirName] = filter_files
3573 filterDict[dirName] = filter_files
3569 return filterDict
3574 return filterDict
3570
3575
3571 def __getFilenameList(self, fileListInKeys, dirList):
3576 def __getFilenameList(self, fileListInKeys, dirList):
3572 for value in fileListInKeys:
3577 for value in fileListInKeys:
3573 dirName = value.keys()[0]
3578 dirName = value.keys()[0]
3574 for file in value[dirName]:
3579 for file in value[dirName]:
3575 filename = os.path.join(dirName, file)
3580 filename = os.path.join(dirName, file)
3576 self.filenameList.append(filename)
3581 self.filenameList.append(filename)
3577
3582
3578
3583
3579 def __selectDataForTimes(self):
3584 def __selectDataForTimes(self):
3580 #aun no esta implementado el filtro for tiempo
3585 #aun no esta implementado el filtro for tiempo
3581 if not(self.status):
3586 if not(self.status):
3582 return None
3587 return None
3583
3588
3584 dirList = [os.path.join(self.path,x) for x in self.dirnameList]
3589 dirList = [os.path.join(self.path,x) for x in self.dirnameList]
3585
3590
3586 fileListInKeys = [self.__filterByGlob1(x) for x in dirList]
3591 fileListInKeys = [self.__filterByGlob1(x) for x in dirList]
3587
3592
3588 self.__getFilenameList(fileListInKeys, dirList)
3593 self.__getFilenameList(fileListInKeys, dirList)
3589
3594
3590 if len(self.filenameList)>0:
3595 if len(self.filenameList)>0:
3591 self.status = 1
3596 self.status = 1
3592 self.filenameList.sort()
3597 self.filenameList.sort()
3593 else:
3598 else:
3594 self.status = 0
3599 self.status = 0
3595 return None
3600 return None
3596
3601
3597
3602
3598 def __searchFilesOffline(self,
3603 def __searchFilesOffline(self,
3599 path,
3604 path,
3600 startDate,
3605 startDate,
3601 endDate,
3606 endDate,
3602 startTime=datetime.time(0,0,0),
3607 startTime=datetime.time(0,0,0),
3603 endTime=datetime.time(23,59,59),
3608 endTime=datetime.time(23,59,59),
3604 walk=True):
3609 walk=True):
3605
3610
3606 self.__setParameters(path, startDate, endDate, startTime, endTime, walk)
3611 self.__setParameters(path, startDate, endDate, startTime, endTime, walk)
3607
3612
3608 self.__checkPath()
3613 self.__checkPath()
3609
3614
3610 self.__findDataForDates()
3615 self.__findDataForDates()
3611
3616
3612 self.__selectDataForTimes()
3617 self.__selectDataForTimes()
3613
3618
3614 for i in range(len(self.filenameList)):
3619 for i in range(len(self.filenameList)):
3615 print "%s" %(self.filenameList[i])
3620 print "%s" %(self.filenameList[i])
3616
3621
3617 return
3622 return
3618
3623
3619 def __setNextFileOffline(self):
3624 def __setNextFileOffline(self):
3620 idFile = self.fileIndex
3625 idFile = self.fileIndex
3621
3626
3622 while (True):
3627 while (True):
3623 idFile += 1
3628 idFile += 1
3624 if not(idFile < len(self.filenameList)):
3629 if not(idFile < len(self.filenameList)):
3625 self.flagNoMoreFiles = 1
3630 self.flagNoMoreFiles = 1
3626 print "No more Files"
3631 print "No more Files"
3627 return 0
3632 return 0
3628
3633
3629 filename = self.filenameList[idFile]
3634 filename = self.filenameList[idFile]
3630
3635
3631 amisrFilePointer = h5py.File(filename,'r')
3636 amisrFilePointer = h5py.File(filename,'r')
3632
3637
3633 break
3638 break
3634
3639
3635 self.flagIsNewFile = 1
3640 self.flagIsNewFile = 1
3636 self.fileIndex = idFile
3641 self.fileIndex = idFile
3637 self.filename = filename
3642 self.filename = filename
3638
3643
3639 self.amisrFilePointer = amisrFilePointer
3644 self.amisrFilePointer = amisrFilePointer
3640
3645
3641 print "Setting the file: %s"%self.filename
3646 print "Setting the file: %s"%self.filename
3642
3647
3643 return 1
3648 return 1
3644
3649
3645 def __readHeader(self):
3650 def __readHeader(self):
3646 self.radacHeaderObj = RadacHeader(self.amisrFilePointer)
3651 self.radacHeaderObj = RadacHeader(self.amisrFilePointer)
3647
3652
3648 #update values from experiment cfg file
3653 #update values from experiment cfg file
3649 self.radacHeaderObj.nrecords = self.recordsperfile_fromfile
3654 self.radacHeaderObj.nrecords = self.recordsperfile_fromfile
3650 self.radacHeaderObj.nbeams = self.nbeamcodes_fromfile
3655 self.radacHeaderObj.nbeams = self.nbeamcodes_fromfile
3651 self.radacHeaderObj.npulses = self.npulsesint_fromfile
3656 self.radacHeaderObj.npulses = self.npulsesint_fromfile
3652 self.radacHeaderObj.nsamples = self.ngates_fromfile
3657 self.radacHeaderObj.nsamples = self.ngates_fromfile
3653
3658
3654 #get tuning frequency
3659 #get tuning frequency
3655 frequency_h5file_dataset = self.amisrFilePointer.get('Rx'+'/TuningFrequency')
3660 frequency_h5file_dataset = self.amisrFilePointer.get('Rx'+'/TuningFrequency')
3656 self.frequency_h5file = frequency_h5file_dataset[0,0]
3661 self.frequency_h5file = frequency_h5file_dataset[0,0]
3657
3662
3658 self.flagIsNewFile = 1
3663 self.flagIsNewFile = 1
3659
3664
3660 def __getBeamCode(self):
3665 def __getBeamCode(self):
3661 self.beamCodeDict = {}
3666 self.beamCodeDict = {}
3662 self.beamRangeDict = {}
3667 self.beamRangeDict = {}
3663
3668
3664 for i in range(len(self.radacHeaderObj.beamCode[0,:])):
3669 for i in range(len(self.radacHeaderObj.beamCode[0,:])):
3665 self.beamCodeDict.setdefault(i)
3670 self.beamCodeDict.setdefault(i)
3666 self.beamRangeDict.setdefault(i)
3671 self.beamRangeDict.setdefault(i)
3667 self.beamCodeDict[i] = self.radacHeaderObj.beamCode[0,i]
3672 self.beamCodeDict[i] = self.radacHeaderObj.beamCode[0,i]
3668
3673
3669
3674
3670 just4record0 = self.radacHeaderObj.beamCodeByPulse[0,:]
3675 just4record0 = self.radacHeaderObj.beamCodeByPulse[0,:]
3671
3676
3672 for i in range(len(self.beamCodeDict.values())):
3677 for i in range(len(self.beamCodeDict.values())):
3673 xx = numpy.where(just4record0==self.beamCodeDict.values()[i])
3678 xx = numpy.where(just4record0==self.beamCodeDict.values()[i])
3674 self.beamRangeDict[i] = xx[0]
3679 self.beamRangeDict[i] = xx[0]
3675
3680
3676 def __getExpParameters(self):
3681 def __getExpParameters(self):
3677 if not(self.status):
3682 if not(self.status):
3678 return None
3683 return None
3679
3684
3680 experimentCfgPath = os.path.join(self.path, self.dirnameList[0], 'Setup')
3685 experimentCfgPath = os.path.join(self.path, self.dirnameList[0], 'Setup')
3681
3686
3682 expFinder = glob.glob1(experimentCfgPath,'*.exp')
3687 expFinder = glob.glob1(experimentCfgPath,'*.exp')
3683 if len(expFinder)== 0:
3688 if len(expFinder)== 0:
3684 self.status = 0
3689 self.status = 0
3685 return None
3690 return None
3686
3691
3687 experimentFilename = os.path.join(experimentCfgPath,expFinder[0])
3692 experimentFilename = os.path.join(experimentCfgPath,expFinder[0])
3688
3693
3689 f = open(experimentFilename)
3694 f = open(experimentFilename)
3690 lines = f.readlines()
3695 lines = f.readlines()
3691 f.close()
3696 f.close()
3692
3697
3693 parmsList = ['npulsesint*','recordsperfile*','nbeamcodes*','ngates*']
3698 parmsList = ['npulsesint*','recordsperfile*','nbeamcodes*','ngates*']
3694 filterList = [fnmatch.filter(lines, x) for x in parmsList]
3699 filterList = [fnmatch.filter(lines, x) for x in parmsList]
3695
3700
3696
3701
3697 values = [re.sub(r'\D',"",x[0]) for x in filterList]
3702 values = [re.sub(r'\D',"",x[0]) for x in filterList]
3698
3703
3699 self.npulsesint_fromfile = int(values[0])
3704 self.npulsesint_fromfile = int(values[0])
3700 self.recordsperfile_fromfile = int(values[1])
3705 self.recordsperfile_fromfile = int(values[1])
3701 self.nbeamcodes_fromfile = int(values[2])
3706 self.nbeamcodes_fromfile = int(values[2])
3702 self.ngates_fromfile = int(values[3])
3707 self.ngates_fromfile = int(values[3])
3703
3708
3704 tufileFinder = fnmatch.filter(lines, 'tufile=*')
3709 tufileFinder = fnmatch.filter(lines, 'tufile=*')
3705 tufile = tufileFinder[0].split('=')[1].split('\n')[0]
3710 tufile = tufileFinder[0].split('=')[1].split('\n')[0]
3706 tufilename = os.path.join(experimentCfgPath,tufile)
3711 tufilename = os.path.join(experimentCfgPath,tufile)
3707
3712
3708 f = open(tufilename)
3713 f = open(tufilename)
3709 lines = f.readlines()
3714 lines = f.readlines()
3710 f.close()
3715 f.close()
3711 self.ippSeconds_fromfile = float(lines[1].split()[2])/1E6
3716 self.ippSeconds_fromfile = float(lines[1].split()[2])/1E6
3712
3717
3713
3718
3714 self.status = 1
3719 self.status = 1
3715
3720
3716 def __setNextFile(self):
3721 def __setNextFile(self):
3717
3722
3718 newFile = self.__setNextFileOffline()
3723 newFile = self.__setNextFileOffline()
3719
3724
3720 if not(newFile):
3725 if not(newFile):
3721 return 0
3726 return 0
3722
3727
3723 self.__readHeader()
3728 self.__readHeader()
3724 self.__getBeamCode()
3729 self.__getBeamCode()
3725 self.readDataBlock()
3730 self.readDataBlock()
3726
3731
3727
3732
3728 def setup(self,path=None,
3733 def setup(self,path=None,
3729 startDate=None,
3734 startDate=None,
3730 endDate=None,
3735 endDate=None,
3731 startTime=datetime.time(0,0,0),
3736 startTime=datetime.time(0,0,0),
3732 endTime=datetime.time(23,59,59),
3737 endTime=datetime.time(23,59,59),
3733 walk=True):
3738 walk=True):
3734
3739
3735 #Busqueda de archivos offline
3740 #Busqueda de archivos offline
3736 self.__searchFilesOffline(path, startDate, endDate, startTime, endTime, walk)
3741 self.__searchFilesOffline(path, startDate, endDate, startTime, endTime, walk)
3737
3742
3738 if not(self.filenameList):
3743 if not(self.filenameList):
3739 print "There is no files into the folder: %s"%(path)
3744 print "There is no files into the folder: %s"%(path)
3740
3745
3741 sys.exit(-1)
3746 sys.exit(-1)
3742
3747
3743 self.__getExpParameters()
3748 self.__getExpParameters()
3744
3749
3745 self.fileIndex = -1
3750 self.fileIndex = -1
3746
3751
3747 self.__setNextFile()
3752 self.__setNextFile()
3748
3753
3749 def readRanges(self):
3754 def readRanges(self):
3750 dataset = self.amisrFilePointer.get('Raw11/Data/Samples/Range')
3755 dataset = self.amisrFilePointer.get('Raw11/Data/Samples/Range')
3751 #self.rangeFromFile = dataset.value
3756 #self.rangeFromFile = dataset.value
3752 self.rangeFromFile = numpy.reshape(dataset.value,(-1))
3757 self.rangeFromFile = numpy.reshape(dataset.value,(-1))
3753 return range
3758 return range
3754
3759
3755
3760
3756 def readRadacTime(self,idrecord, range1, range2):
3761 def readRadacTime(self,idrecord, range1, range2):
3757 self.radacTimeFromFile = self.radacHeaderObj.radacTime.value
3762 self.radacTimeFromFile = self.radacHeaderObj.radacTime.value
3758
3763
3759 radacTimeByFrame = numpy.zeros((self.radacHeaderObj.npulses))
3764 radacTimeByFrame = numpy.zeros((self.radacHeaderObj.npulses))
3760 #radacTimeByFrame = dataset[idrecord - 1,range1]
3765 #radacTimeByFrame = dataset[idrecord - 1,range1]
3761 #radacTimeByFrame = dataset[idrecord,range2]
3766 #radacTimeByFrame = dataset[idrecord,range2]
3762
3767
3763 return radacTimeByFrame
3768 return radacTimeByFrame
3764
3769
3765 def readBeamCode(self, idrecord, range1, range2):
3770 def readBeamCode(self, idrecord, range1, range2):
3766 dataset = self.amisrFilePointer.get('Raw11/Data/RadacHeader/BeamCode')
3771 dataset = self.amisrFilePointer.get('Raw11/Data/RadacHeader/BeamCode')
3767 beamcodeByFrame = numpy.zeros((self.radacHeaderObj.npulses))
3772 beamcodeByFrame = numpy.zeros((self.radacHeaderObj.npulses))
3768 self.beamCodesFromFile = dataset.value
3773 self.beamCodesFromFile = dataset.value
3769
3774
3770 #beamcodeByFrame[range1] = dataset[idrecord - 1, range1]
3775 #beamcodeByFrame[range1] = dataset[idrecord - 1, range1]
3771 #beamcodeByFrame[range2] = dataset[idrecord, range2]
3776 #beamcodeByFrame[range2] = dataset[idrecord, range2]
3772 beamcodeByFrame[range1] = dataset[idrecord, range1]
3777 beamcodeByFrame[range1] = dataset[idrecord, range1]
3773 beamcodeByFrame[range2] = dataset[idrecord, range2]
3778 beamcodeByFrame[range2] = dataset[idrecord, range2]
3774
3779
3775 return beamcodeByFrame
3780 return beamcodeByFrame
3776
3781
3777
3782
3778 def __setDataByFrame(self):
3783 def __setDataByFrame(self):
3779 ndata = 2 # porque es complejo
3784 ndata = 2 # porque es complejo
3780 dataByFrame = numpy.zeros((self.radacHeaderObj.npulses, self.radacHeaderObj.nsamples, ndata))
3785 dataByFrame = numpy.zeros((self.radacHeaderObj.npulses, self.radacHeaderObj.nsamples, ndata))
3781 return dataByFrame
3786 return dataByFrame
3782
3787
3783 def __readDataSet(self):
3788 def __readDataSet(self):
3784 dataset = self.amisrFilePointer.get('Raw11/Data/Samples/Data')
3789 dataset = self.amisrFilePointer.get('Raw11/Data/Samples/Data')
3785 return dataset
3790 return dataset
3786
3791
3787 def __setDataBlock(self,):
3792 def __setDataBlock(self,):
3788 real = self.dataByFrame[:,:,0] #asumo que 0 es real
3793 real = self.dataByFrame[:,:,0] #asumo que 0 es real
3789 imag = self.dataByFrame[:,:,1] #asumo que 1 es imaginario
3794 imag = self.dataByFrame[:,:,1] #asumo que 1 es imaginario
3790 datablock = real + imag*1j #armo el complejo
3795 datablock = real + imag*1j #armo el complejo
3791 return datablock
3796 return datablock
3792
3797
3793 def readSamples_version1(self,idrecord):
3798 def readSamples_version1(self,idrecord):
3794 #estas tres primeras lineas solo se deben ejecutar una vez
3799 #estas tres primeras lineas solo se deben ejecutar una vez
3795 if self.flagIsNewFile:
3800 if self.flagIsNewFile:
3796 self.idpulse_range1, self.idpulse_range2 = self.radacHeaderObj.getIndexRangeToPulse(0)
3801 self.idpulse_range1, self.idpulse_range2 = self.radacHeaderObj.getIndexRangeToPulse(0)
3797 self.dataByFrame = self.__setDataByFrame()
3802 self.dataByFrame = self.__setDataByFrame()
3798 self.beamCodeByFrame = self.readBeamCode(idrecord, self.idpulse_range1, self.idpulse_range2)
3803 self.beamCodeByFrame = self.readBeamCode(idrecord, self.idpulse_range1, self.idpulse_range2)
3799 self.radacTimeByFrame = self.readRadacTime(idrecord, self.idpulse_range1, self.idpulse_range2)
3804 self.radacTimeByFrame = self.readRadacTime(idrecord, self.idpulse_range1, self.idpulse_range2)
3800 #reading dataset
3805 #reading dataset
3801 self.dataset = self.__readDataSet()
3806 self.dataset = self.__readDataSet()
3802
3807
3803 if idrecord == 0:
3808 if idrecord == 0:
3804
3809
3805 if len(numpy.where(self.dataByFrame!=0.0)[0]) or len(numpy.where(self.dataByFrame!=0.0)[1]) or len(numpy.where(self.dataByFrame!=0.0)[2]):
3810 if len(numpy.where(self.dataByFrame!=0.0)[0]) or len(numpy.where(self.dataByFrame!=0.0)[1]) or len(numpy.where(self.dataByFrame!=0.0)[2]):
3806 #falta agregar una condicion para datos discontinuos
3811 #falta agregar una condicion para datos discontinuos
3807 #por defecto une los datos del record anterior
3812 #por defecto une los datos del record anterior
3808 self.dataByFrame[self.idpulse_range2, :, :] = self.dataset[idrecord, self.idpulse_range2, :, :]
3813 self.dataByFrame[self.idpulse_range2, :, :] = self.dataset[idrecord, self.idpulse_range2, :, :]
3809 #timepulse
3814 #timepulse
3810 self.radacTimeByFrame[self.idpulse_range2] = self.radacHeaderObj.radacTime[idrecord, self.idpulse_range2]
3815 self.radacTimeByFrame[self.idpulse_range2] = self.radacHeaderObj.radacTime[idrecord, self.idpulse_range2]
3811 else:
3816 else:
3812 self.dataByFrame[self.idpulse_range1, :, :] = self.dataset[idrecord, self.idpulse_range1, :, :]
3817 self.dataByFrame[self.idpulse_range1, :, :] = self.dataset[idrecord, self.idpulse_range1, :, :]
3813
3818
3814 self.radacTimeByFrame[self.idpulse_range1] = self.radacHeaderObj.radacTime[idrecord, self.idpulse_range1]
3819 self.radacTimeByFrame[self.idpulse_range1] = self.radacHeaderObj.radacTime[idrecord, self.idpulse_range1]
3815
3820
3816 datablock = self.__setDataBlock()
3821 datablock = self.__setDataBlock()
3817
3822
3818 return datablock
3823 return datablock
3819
3824
3820 self.dataByFrame[self.idpulse_range1, :, :] = self.dataset[idrecord - 1,self.idpulse_range1, :, :]
3825 self.dataByFrame[self.idpulse_range1, :, :] = self.dataset[idrecord - 1,self.idpulse_range1, :, :]
3821 self.dataByFrame[self.idpulse_range2, :, :] = self.dataset[idrecord, self.idpulse_range2, :, :]
3826 self.dataByFrame[self.idpulse_range2, :, :] = self.dataset[idrecord, self.idpulse_range2, :, :]
3822 datablock = self.__setDataBlock()
3827 datablock = self.__setDataBlock()
3823 self.flagIsNewFile = 0
3828 self.flagIsNewFile = 0
3824
3829
3825 self.dataByFrame[self.idpulse_range1, :, :] = self.dataset[idrecord, self.idpulse_range1, :, :]
3830 self.dataByFrame[self.idpulse_range1, :, :] = self.dataset[idrecord, self.idpulse_range1, :, :]
3826
3831
3827
3832
3828 return datablock
3833 return datablock
3829
3834
3830
3835
3831 def readSamples(self,idrecord):
3836 def readSamples(self,idrecord):
3832 if self.flagIsNewFile:
3837 if self.flagIsNewFile:
3833 self.dataByFrame = self.__setDataByFrame()
3838 self.dataByFrame = self.__setDataByFrame()
3834 self.beamCodeByFrame = self.amisrFilePointer.get('Raw11/Data/RadacHeader/BeamCode').value[idrecord, :]
3839 self.beamCodeByFrame = self.amisrFilePointer.get('Raw11/Data/RadacHeader/BeamCode').value[idrecord, :]
3835
3840
3836 #reading ranges
3841 #reading ranges
3837 self.readRanges()
3842 self.readRanges()
3838 #reading dataset
3843 #reading dataset
3839 self.dataset = self.__readDataSet()
3844 self.dataset = self.__readDataSet()
3840
3845
3841 self.flagIsNewFile = 0
3846 self.flagIsNewFile = 0
3842 self.radacTimeByFrame = self.radacHeaderObj.radacTime.value[idrecord, :]
3847 self.radacTimeByFrame = self.radacHeaderObj.radacTime.value[idrecord, :]
3843 self.dataByFrame = self.dataset[idrecord, :, :, :]
3848 self.dataByFrame = self.dataset[idrecord, :, :, :]
3844 datablock = self.__setDataBlock()
3849 datablock = self.__setDataBlock()
3845 return datablock
3850 return datablock
3846
3851
3847
3852
3848 def readDataBlock(self):
3853 def readDataBlock(self):
3849
3854
3850 #self.datablock = self.readSamples(self.idrecord_count)
3855 #self.datablock = self.readSamples(self.idrecord_count)
3851 self.datablock = self.readSamples(self.idrecord_count)
3856 self.datablock = self.readSamples(self.idrecord_count)
3852 #print 'record:', self.idrecord_count
3857 #print 'record:', self.idrecord_count
3853
3858
3854 self.idrecord_count += 1
3859 self.idrecord_count += 1
3855 self.profileIndex = 0
3860 self.profileIndex = 0
3856
3861
3857 if self.idrecord_count >= self.radacHeaderObj.nrecords:
3862 if self.idrecord_count >= self.radacHeaderObj.nrecords:
3858 self.idrecord_count = 0
3863 self.idrecord_count = 0
3859 self.flagIsNewFile = 1
3864 self.flagIsNewFile = 1
3860
3865
3861 def readNextBlock(self):
3866 def readNextBlock(self):
3862
3867
3863 self.readDataBlock()
3868 self.readDataBlock()
3864
3869
3865 if self.flagIsNewFile:
3870 if self.flagIsNewFile:
3866 self.__setNextFile()
3871 self.__setNextFile()
3867 pass
3872 pass
3868
3873
3869 def __hasNotDataInBuffer(self):
3874 def __hasNotDataInBuffer(self):
3870 #self.radacHeaderObj.npulses debe ser otra variable para considerar el numero de pulsos a tomar en el primer y ultimo record
3875 #self.radacHeaderObj.npulses debe ser otra variable para considerar el numero de pulsos a tomar en el primer y ultimo record
3871 if self.profileIndex >= self.radacHeaderObj.npulses:
3876 if self.profileIndex >= self.radacHeaderObj.npulses:
3872 return 1
3877 return 1
3873 return 0
3878 return 0
3874
3879
3875 def printUTC(self):
3880 def printUTC(self):
3876 print self.dataOut.utctime
3881 print self.dataOut.utctime
3877 print ''
3882 print ''
3878
3883
3879 def setObjProperties(self):
3884 def setObjProperties(self):
3880 self.dataOut.heightList = self.rangeFromFile/1000.0 #km
3885 self.dataOut.heightList = self.rangeFromFile/1000.0 #km
3881 self.dataOut.nProfiles = self.radacHeaderObj.npulses
3886 self.dataOut.nProfiles = self.radacHeaderObj.npulses
3887 self.dataOut.nRecords = self.radacHeaderObj.nrecords
3888 self.dataOut.nBeams = self.radacHeaderObj.nbeams
3882 self.dataOut.ippSeconds = self.ippSeconds_fromfile
3889 self.dataOut.ippSeconds = self.ippSeconds_fromfile
3883 self.dataOut.timeInterval = self.dataOut.ippSeconds * self.dataOut.nCohInt
3890 self.dataOut.timeInterval = self.dataOut.ippSeconds * self.dataOut.nCohInt
3884 self.dataOut.frequency = self.frequency_h5file
3891 self.dataOut.frequency = self.frequency_h5file
3885 self.dataOut.nBaud = None
3892 self.dataOut.nBaud = None
3886 self.dataOut.nCode = None
3893 self.dataOut.nCode = None
3887 self.dataOut.code = None
3894 self.dataOut.code = None
3888
3895
3889 self.dataOut.beamCodeDict = self.beamCodeDict
3896 self.dataOut.beamCodeDict = self.beamCodeDict
3890 self.dataOut.beamRangeDict = self.beamRangeDict
3897 self.dataOut.beamRangeDict = self.beamRangeDict
3891
3898
3892 def getData(self):
3899 def getData(self):
3893
3900
3894 if self.flagNoMoreFiles:
3901 if self.flagNoMoreFiles:
3895 self.dataOut.flagNoData = True
3902 self.dataOut.flagNoData = True
3896 print 'Process finished'
3903 print 'Process finished'
3897 return 0
3904 return 0
3898
3905
3899 if self.__hasNotDataInBuffer():
3906 if self.__hasNotDataInBuffer():
3900 self.readNextBlock()
3907 self.readNextBlock()
3901 # if not( self.readNextBlock() ):
3908 # if not( self.readNextBlock() ):
3902 # return 0
3909 # return 0
3903 # self.getFirstHeader()
3910 # self.getFirstHeader()
3904
3911
3905 if self.datablock == None: # setear esta condicion cuando no hayan datos por leers
3912 if self.datablock == None: # setear esta condicion cuando no hayan datos por leers
3906 self.dataOut.flagNoData = True
3913 self.dataOut.flagNoData = True
3907 return 0
3914 return 0
3908
3915
3909 self.dataOut.data = numpy.reshape(self.datablock[self.profileIndex,:],(1,-1))
3916 self.dataOut.data = numpy.reshape(self.datablock[self.profileIndex,:],(1,-1))
3910
3917
3911 self.dataOut.utctime = self.radacTimeByFrame[self.profileIndex]
3918 self.dataOut.utctime = self.radacTimeByFrame[self.profileIndex]
3912
3919
3913 self.dataOut.flagNoData = False
3920 self.dataOut.flagNoData = False
3914
3921
3915 self.profileIndex += 1
3922 self.profileIndex += 1
3916
3923
3917 return self.dataOut.data
3924 return self.dataOut.data
3918
3925
3919
3926
3920 def run(self, **kwargs):
3927 def run(self, **kwargs):
3921 if not(self.isConfig):
3928 if not(self.isConfig):
3922 self.setup(**kwargs)
3929 self.setup(**kwargs)
3923 self.setObjProperties()
3930 self.setObjProperties()
3924 self.isConfig = True
3931 self.isConfig = True
3925
3932
3926 self.getData()
3933 self.getData()
@@ -1,2132 +1,2150
1 '''
1 '''
2
2
3 $Author: dsuarez $
3 $Author: dsuarez $
4 $Id: Processor.py 1 2012-11-12 18:56:07Z dsuarez $
4 $Id: Processor.py 1 2012-11-12 18:56:07Z dsuarez $
5 '''
5 '''
6 import os
6 import os
7 import numpy
7 import numpy
8 import datetime
8 import datetime
9 import time
9 import time
10 import math
10 import math
11 from jrodata import *
11 from jrodata import *
12 from jrodataIO import *
12 from jrodataIO import *
13 from jroplot import *
13 from jroplot import *
14
14
15 try:
15 try:
16 import cfunctions
16 import cfunctions
17 except:
17 except:
18 pass
18 pass
19
19
20 class ProcessingUnit:
20 class ProcessingUnit:
21
21
22 """
22 """
23 Esta es la clase base para el procesamiento de datos.
23 Esta es la clase base para el procesamiento de datos.
24
24
25 Contiene el metodo "call" para llamar operaciones. Las operaciones pueden ser:
25 Contiene el metodo "call" para llamar operaciones. Las operaciones pueden ser:
26 - Metodos internos (callMethod)
26 - Metodos internos (callMethod)
27 - Objetos del tipo Operation (callObject). Antes de ser llamados, estos objetos
27 - Objetos del tipo Operation (callObject). Antes de ser llamados, estos objetos
28 tienen que ser agreagados con el metodo "add".
28 tienen que ser agreagados con el metodo "add".
29
29
30 """
30 """
31 # objeto de datos de entrada (Voltage, Spectra o Correlation)
31 # objeto de datos de entrada (Voltage, Spectra o Correlation)
32 dataIn = None
32 dataIn = None
33
33
34 # objeto de datos de entrada (Voltage, Spectra o Correlation)
34 # objeto de datos de entrada (Voltage, Spectra o Correlation)
35 dataOut = None
35 dataOut = None
36
36
37
37
38 objectDict = None
38 objectDict = None
39
39
40 def __init__(self):
40 def __init__(self):
41
41
42 self.objectDict = {}
42 self.objectDict = {}
43
43
44 def init(self):
44 def init(self):
45
45
46 raise ValueError, "Not implemented"
46 raise ValueError, "Not implemented"
47
47
48 def addOperation(self, object, objId):
48 def addOperation(self, object, objId):
49
49
50 """
50 """
51 Agrega el objeto "object" a la lista de objetos "self.objectList" y retorna el
51 Agrega el objeto "object" a la lista de objetos "self.objectList" y retorna el
52 identificador asociado a este objeto.
52 identificador asociado a este objeto.
53
53
54 Input:
54 Input:
55
55
56 object : objeto de la clase "Operation"
56 object : objeto de la clase "Operation"
57
57
58 Return:
58 Return:
59
59
60 objId : identificador del objeto, necesario para ejecutar la operacion
60 objId : identificador del objeto, necesario para ejecutar la operacion
61 """
61 """
62
62
63 self.objectDict[objId] = object
63 self.objectDict[objId] = object
64
64
65 return objId
65 return objId
66
66
67 def operation(self, **kwargs):
67 def operation(self, **kwargs):
68
68
69 """
69 """
70 Operacion directa sobre la data (dataOut.data). Es necesario actualizar los valores de los
70 Operacion directa sobre la data (dataOut.data). Es necesario actualizar los valores de los
71 atributos del objeto dataOut
71 atributos del objeto dataOut
72
72
73 Input:
73 Input:
74
74
75 **kwargs : Diccionario de argumentos de la funcion a ejecutar
75 **kwargs : Diccionario de argumentos de la funcion a ejecutar
76 """
76 """
77
77
78 raise ValueError, "ImplementedError"
78 raise ValueError, "ImplementedError"
79
79
80 def callMethod(self, name, **kwargs):
80 def callMethod(self, name, **kwargs):
81
81
82 """
82 """
83 Ejecuta el metodo con el nombre "name" y con argumentos **kwargs de la propia clase.
83 Ejecuta el metodo con el nombre "name" y con argumentos **kwargs de la propia clase.
84
84
85 Input:
85 Input:
86 name : nombre del metodo a ejecutar
86 name : nombre del metodo a ejecutar
87
87
88 **kwargs : diccionario con los nombres y valores de la funcion a ejecutar.
88 **kwargs : diccionario con los nombres y valores de la funcion a ejecutar.
89
89
90 """
90 """
91 if name != 'run':
91 if name != 'run':
92
92
93 if name == 'init' and self.dataIn.isEmpty():
93 if name == 'init' and self.dataIn.isEmpty():
94 self.dataOut.flagNoData = True
94 self.dataOut.flagNoData = True
95 return False
95 return False
96
96
97 if name != 'init' and self.dataOut.isEmpty():
97 if name != 'init' and self.dataOut.isEmpty():
98 return False
98 return False
99
99
100 methodToCall = getattr(self, name)
100 methodToCall = getattr(self, name)
101
101
102 methodToCall(**kwargs)
102 methodToCall(**kwargs)
103
103
104 if name != 'run':
104 if name != 'run':
105 return True
105 return True
106
106
107 if self.dataOut.isEmpty():
107 if self.dataOut.isEmpty():
108 return False
108 return False
109
109
110 return True
110 return True
111
111
112 def callObject(self, objId, **kwargs):
112 def callObject(self, objId, **kwargs):
113
113
114 """
114 """
115 Ejecuta la operacion asociada al identificador del objeto "objId"
115 Ejecuta la operacion asociada al identificador del objeto "objId"
116
116
117 Input:
117 Input:
118
118
119 objId : identificador del objeto a ejecutar
119 objId : identificador del objeto a ejecutar
120
120
121 **kwargs : diccionario con los nombres y valores de la funcion a ejecutar.
121 **kwargs : diccionario con los nombres y valores de la funcion a ejecutar.
122
122
123 Return:
123 Return:
124
124
125 None
125 None
126 """
126 """
127
127
128 if self.dataOut.isEmpty():
128 if self.dataOut.isEmpty():
129 return False
129 return False
130
130
131 object = self.objectDict[objId]
131 object = self.objectDict[objId]
132
132
133 object.run(self.dataOut, **kwargs)
133 object.run(self.dataOut, **kwargs)
134
134
135 return True
135 return True
136
136
137 def call(self, operationConf, **kwargs):
137 def call(self, operationConf, **kwargs):
138
138
139 """
139 """
140 Return True si ejecuta la operacion "operationConf.name" con los
140 Return True si ejecuta la operacion "operationConf.name" con los
141 argumentos "**kwargs". False si la operacion no se ha ejecutado.
141 argumentos "**kwargs". False si la operacion no se ha ejecutado.
142 La operacion puede ser de dos tipos:
142 La operacion puede ser de dos tipos:
143
143
144 1. Un metodo propio de esta clase:
144 1. Un metodo propio de esta clase:
145
145
146 operation.type = "self"
146 operation.type = "self"
147
147
148 2. El metodo "run" de un objeto del tipo Operation o de un derivado de ella:
148 2. El metodo "run" de un objeto del tipo Operation o de un derivado de ella:
149 operation.type = "other".
149 operation.type = "other".
150
150
151 Este objeto de tipo Operation debe de haber sido agregado antes con el metodo:
151 Este objeto de tipo Operation debe de haber sido agregado antes con el metodo:
152 "addOperation" e identificado con el operation.id
152 "addOperation" e identificado con el operation.id
153
153
154
154
155 con el id de la operacion.
155 con el id de la operacion.
156
156
157 Input:
157 Input:
158
158
159 Operation : Objeto del tipo operacion con los atributos: name, type y id.
159 Operation : Objeto del tipo operacion con los atributos: name, type y id.
160
160
161 """
161 """
162
162
163 if operationConf.type == 'self':
163 if operationConf.type == 'self':
164 sts = self.callMethod(operationConf.name, **kwargs)
164 sts = self.callMethod(operationConf.name, **kwargs)
165
165
166 if operationConf.type == 'other':
166 if operationConf.type == 'other':
167 sts = self.callObject(operationConf.id, **kwargs)
167 sts = self.callObject(operationConf.id, **kwargs)
168
168
169 return sts
169 return sts
170
170
171 def setInput(self, dataIn):
171 def setInput(self, dataIn):
172
172
173 self.dataIn = dataIn
173 self.dataIn = dataIn
174
174
175 def getOutput(self):
175 def getOutput(self):
176
176
177 return self.dataOut
177 return self.dataOut
178
178
179 class Operation():
179 class Operation():
180
180
181 """
181 """
182 Clase base para definir las operaciones adicionales que se pueden agregar a la clase ProcessingUnit
182 Clase base para definir las operaciones adicionales que se pueden agregar a la clase ProcessingUnit
183 y necesiten acumular informacion previa de los datos a procesar. De preferencia usar un buffer de
183 y necesiten acumular informacion previa de los datos a procesar. De preferencia usar un buffer de
184 acumulacion dentro de esta clase
184 acumulacion dentro de esta clase
185
185
186 Ejemplo: Integraciones coherentes, necesita la informacion previa de los n perfiles anteriores (bufffer)
186 Ejemplo: Integraciones coherentes, necesita la informacion previa de los n perfiles anteriores (bufffer)
187
187
188 """
188 """
189
189
190 __buffer = None
190 __buffer = None
191 __isConfig = False
191 __isConfig = False
192
192
193 def __init__(self):
193 def __init__(self):
194
194
195 pass
195 pass
196
196
197 def run(self, dataIn, **kwargs):
197 def run(self, dataIn, **kwargs):
198
198
199 """
199 """
200 Realiza las operaciones necesarias sobre la dataIn.data y actualiza los atributos del objeto dataIn.
200 Realiza las operaciones necesarias sobre la dataIn.data y actualiza los atributos del objeto dataIn.
201
201
202 Input:
202 Input:
203
203
204 dataIn : objeto del tipo JROData
204 dataIn : objeto del tipo JROData
205
205
206 Return:
206 Return:
207
207
208 None
208 None
209
209
210 Affected:
210 Affected:
211 __buffer : buffer de recepcion de datos.
211 __buffer : buffer de recepcion de datos.
212
212
213 """
213 """
214
214
215 raise ValueError, "ImplementedError"
215 raise ValueError, "ImplementedError"
216
216
217 class VoltageProc(ProcessingUnit):
217 class VoltageProc(ProcessingUnit):
218
218
219
219
220 def __init__(self):
220 def __init__(self):
221
221
222 self.objectDict = {}
222 self.objectDict = {}
223 self.dataOut = Voltage()
223 self.dataOut = Voltage()
224 self.flip = 1
224 self.flip = 1
225
225
226 def __updateObjFromAmisrInput(self):
226 def __updateObjFromAmisrInput(self):
227
227
228 self.dataOut.timeZone = self.dataIn.timeZone
228 self.dataOut.timeZone = self.dataIn.timeZone
229 self.dataOut.dstFlag = self.dataIn.dstFlag
229 self.dataOut.dstFlag = self.dataIn.dstFlag
230 self.dataOut.errorCount = self.dataIn.errorCount
230 self.dataOut.errorCount = self.dataIn.errorCount
231 self.dataOut.useLocalTime = self.dataIn.useLocalTime
231 self.dataOut.useLocalTime = self.dataIn.useLocalTime
232
232
233 self.dataOut.flagNoData = self.dataIn.flagNoData
233 self.dataOut.flagNoData = self.dataIn.flagNoData
234 self.dataOut.data = self.dataIn.data
234 self.dataOut.data = self.dataIn.data
235 self.dataOut.utctime = self.dataIn.utctime
235 self.dataOut.utctime = self.dataIn.utctime
236 self.dataOut.channelList = self.dataIn.channelList
236 self.dataOut.channelList = self.dataIn.channelList
237 self.dataOut.timeInterval = self.dataIn.timeInterval
237 self.dataOut.timeInterval = self.dataIn.timeInterval
238 self.dataOut.heightList = self.dataIn.heightList
238 self.dataOut.heightList = self.dataIn.heightList
239 self.dataOut.nProfiles = self.dataIn.nProfiles
239 self.dataOut.nProfiles = self.dataIn.nProfiles
240
240
241 self.dataOut.nCohInt = self.dataIn.nCohInt
241 self.dataOut.nCohInt = self.dataIn.nCohInt
242 self.dataOut.ippSeconds = self.dataIn.ippSeconds
242 self.dataOut.ippSeconds = self.dataIn.ippSeconds
243 self.dataOut.frequency = self.dataIn.frequency
243 self.dataOut.frequency = self.dataIn.frequency
244
244
245 pass
245 pass
246
246
247 def init(self):
247 def init(self):
248
248
249
249
250 if self.dataIn.type == 'AMISR':
250 if self.dataIn.type == 'AMISR':
251 self.__updateObjFromAmisrInput()
251 self.__updateObjFromAmisrInput()
252
252
253 if self.dataIn.type == 'Voltage':
253 if self.dataIn.type == 'Voltage':
254 self.dataOut.copy(self.dataIn)
254 self.dataOut.copy(self.dataIn)
255 # No necesita copiar en cada init() los atributos de dataIn
255 # No necesita copiar en cada init() los atributos de dataIn
256 # la copia deberia hacerse por cada nuevo bloque de datos
256 # la copia deberia hacerse por cada nuevo bloque de datos
257
257
258 def selectChannels(self, channelList):
258 def selectChannels(self, channelList):
259
259
260 channelIndexList = []
260 channelIndexList = []
261
261
262 for channel in channelList:
262 for channel in channelList:
263 index = self.dataOut.channelList.index(channel)
263 index = self.dataOut.channelList.index(channel)
264 channelIndexList.append(index)
264 channelIndexList.append(index)
265
265
266 self.selectChannelsByIndex(channelIndexList)
266 self.selectChannelsByIndex(channelIndexList)
267
267
268 def selectChannelsByIndex(self, channelIndexList):
268 def selectChannelsByIndex(self, channelIndexList):
269 """
269 """
270 Selecciona un bloque de datos en base a canales segun el channelIndexList
270 Selecciona un bloque de datos en base a canales segun el channelIndexList
271
271
272 Input:
272 Input:
273 channelIndexList : lista sencilla de canales a seleccionar por ej. [2,3,7]
273 channelIndexList : lista sencilla de canales a seleccionar por ej. [2,3,7]
274
274
275 Affected:
275 Affected:
276 self.dataOut.data
276 self.dataOut.data
277 self.dataOut.channelIndexList
277 self.dataOut.channelIndexList
278 self.dataOut.nChannels
278 self.dataOut.nChannels
279 self.dataOut.m_ProcessingHeader.totalSpectra
279 self.dataOut.m_ProcessingHeader.totalSpectra
280 self.dataOut.systemHeaderObj.numChannels
280 self.dataOut.systemHeaderObj.numChannels
281 self.dataOut.m_ProcessingHeader.blockSize
281 self.dataOut.m_ProcessingHeader.blockSize
282
282
283 Return:
283 Return:
284 None
284 None
285 """
285 """
286
286
287 for channelIndex in channelIndexList:
287 for channelIndex in channelIndexList:
288 if channelIndex not in self.dataOut.channelIndexList:
288 if channelIndex not in self.dataOut.channelIndexList:
289 print channelIndexList
289 print channelIndexList
290 raise ValueError, "The value %d in channelIndexList is not valid" %channelIndex
290 raise ValueError, "The value %d in channelIndexList is not valid" %channelIndex
291
291
292 nChannels = len(channelIndexList)
292 nChannels = len(channelIndexList)
293
293
294 data = self.dataOut.data[channelIndexList,:]
294 data = self.dataOut.data[channelIndexList,:]
295
295
296 self.dataOut.data = data
296 self.dataOut.data = data
297 self.dataOut.channelList = [self.dataOut.channelList[i] for i in channelIndexList]
297 self.dataOut.channelList = [self.dataOut.channelList[i] for i in channelIndexList]
298 # self.dataOut.nChannels = nChannels
298 # self.dataOut.nChannels = nChannels
299
299
300 return 1
300 return 1
301
301
302 def selectHeights(self, minHei=None, maxHei=None):
302 def selectHeights(self, minHei=None, maxHei=None):
303 """
303 """
304 Selecciona un bloque de datos en base a un grupo de valores de alturas segun el rango
304 Selecciona un bloque de datos en base a un grupo de valores de alturas segun el rango
305 minHei <= height <= maxHei
305 minHei <= height <= maxHei
306
306
307 Input:
307 Input:
308 minHei : valor minimo de altura a considerar
308 minHei : valor minimo de altura a considerar
309 maxHei : valor maximo de altura a considerar
309 maxHei : valor maximo de altura a considerar
310
310
311 Affected:
311 Affected:
312 Indirectamente son cambiados varios valores a travez del metodo selectHeightsByIndex
312 Indirectamente son cambiados varios valores a travez del metodo selectHeightsByIndex
313
313
314 Return:
314 Return:
315 1 si el metodo se ejecuto con exito caso contrario devuelve 0
315 1 si el metodo se ejecuto con exito caso contrario devuelve 0
316 """
316 """
317
317
318 if minHei == None:
318 if minHei == None:
319 minHei = self.dataOut.heightList[0]
319 minHei = self.dataOut.heightList[0]
320
320
321 if maxHei == None:
321 if maxHei == None:
322 maxHei = self.dataOut.heightList[-1]
322 maxHei = self.dataOut.heightList[-1]
323
323
324 if (minHei < self.dataOut.heightList[0]) or (minHei > maxHei):
324 if (minHei < self.dataOut.heightList[0]) or (minHei > maxHei):
325 raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
325 raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
326
326
327
327
328 if (maxHei > self.dataOut.heightList[-1]):
328 if (maxHei > self.dataOut.heightList[-1]):
329 maxHei = self.dataOut.heightList[-1]
329 maxHei = self.dataOut.heightList[-1]
330 # raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
330 # raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
331
331
332 minIndex = 0
332 minIndex = 0
333 maxIndex = 0
333 maxIndex = 0
334 heights = self.dataOut.heightList
334 heights = self.dataOut.heightList
335
335
336 inda = numpy.where(heights >= minHei)
336 inda = numpy.where(heights >= minHei)
337 indb = numpy.where(heights <= maxHei)
337 indb = numpy.where(heights <= maxHei)
338
338
339 try:
339 try:
340 minIndex = inda[0][0]
340 minIndex = inda[0][0]
341 except:
341 except:
342 minIndex = 0
342 minIndex = 0
343
343
344 try:
344 try:
345 maxIndex = indb[0][-1]
345 maxIndex = indb[0][-1]
346 except:
346 except:
347 maxIndex = len(heights)
347 maxIndex = len(heights)
348
348
349 self.selectHeightsByIndex(minIndex, maxIndex)
349 self.selectHeightsByIndex(minIndex, maxIndex)
350
350
351 return 1
351 return 1
352
352
353
353
354 def selectHeightsByIndex(self, minIndex, maxIndex):
354 def selectHeightsByIndex(self, minIndex, maxIndex):
355 """
355 """
356 Selecciona un bloque de datos en base a un grupo indices de alturas segun el rango
356 Selecciona un bloque de datos en base a un grupo indices de alturas segun el rango
357 minIndex <= index <= maxIndex
357 minIndex <= index <= maxIndex
358
358
359 Input:
359 Input:
360 minIndex : valor de indice minimo de altura a considerar
360 minIndex : valor de indice minimo de altura a considerar
361 maxIndex : valor de indice maximo de altura a considerar
361 maxIndex : valor de indice maximo de altura a considerar
362
362
363 Affected:
363 Affected:
364 self.dataOut.data
364 self.dataOut.data
365 self.dataOut.heightList
365 self.dataOut.heightList
366
366
367 Return:
367 Return:
368 1 si el metodo se ejecuto con exito caso contrario devuelve 0
368 1 si el metodo se ejecuto con exito caso contrario devuelve 0
369 """
369 """
370
370
371 if (minIndex < 0) or (minIndex > maxIndex):
371 if (minIndex < 0) or (minIndex > maxIndex):
372 raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
372 raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
373
373
374 if (maxIndex >= self.dataOut.nHeights):
374 if (maxIndex >= self.dataOut.nHeights):
375 maxIndex = self.dataOut.nHeights-1
375 maxIndex = self.dataOut.nHeights-1
376 # raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
376 # raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
377
377
378 nHeights = maxIndex - minIndex + 1
378 nHeights = maxIndex - minIndex + 1
379
379
380 #voltage
380 #voltage
381 data = self.dataOut.data[:,minIndex:maxIndex+1]
381 data = self.dataOut.data[:,minIndex:maxIndex+1]
382
382
383 firstHeight = self.dataOut.heightList[minIndex]
383 firstHeight = self.dataOut.heightList[minIndex]
384
384
385 self.dataOut.data = data
385 self.dataOut.data = data
386 self.dataOut.heightList = self.dataOut.heightList[minIndex:maxIndex+1]
386 self.dataOut.heightList = self.dataOut.heightList[minIndex:maxIndex+1]
387
387
388 return 1
388 return 1
389
389
390
390
391 def filterByHeights(self, window):
391 def filterByHeights(self, window):
392 deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
392 deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
393
393
394 if window == None:
394 if window == None:
395 window = (self.dataOut.radarControllerHeaderObj.txA/self.dataOut.radarControllerHeaderObj.nBaud) / deltaHeight
395 window = (self.dataOut.radarControllerHeaderObj.txA/self.dataOut.radarControllerHeaderObj.nBaud) / deltaHeight
396
396
397 newdelta = deltaHeight * window
397 newdelta = deltaHeight * window
398 r = self.dataOut.data.shape[1] % window
398 r = self.dataOut.data.shape[1] % window
399 buffer = self.dataOut.data[:,0:self.dataOut.data.shape[1]-r]
399 buffer = self.dataOut.data[:,0:self.dataOut.data.shape[1]-r]
400 buffer = buffer.reshape(self.dataOut.data.shape[0],self.dataOut.data.shape[1]/window,window)
400 buffer = buffer.reshape(self.dataOut.data.shape[0],self.dataOut.data.shape[1]/window,window)
401 buffer = numpy.sum(buffer,2)
401 buffer = numpy.sum(buffer,2)
402 self.dataOut.data = buffer
402 self.dataOut.data = buffer
403 self.dataOut.heightList = numpy.arange(self.dataOut.heightList[0],newdelta*(self.dataOut.nHeights-r)/window,newdelta)
403 self.dataOut.heightList = numpy.arange(self.dataOut.heightList[0],newdelta*(self.dataOut.nHeights-r)/window,newdelta)
404 self.dataOut.windowOfFilter = window
404 self.dataOut.windowOfFilter = window
405
405
406 def deFlip(self):
406 def deFlip(self):
407 self.dataOut.data *= self.flip
407 self.dataOut.data *= self.flip
408 self.flip *= -1.
408 self.flip *= -1.
409
409
410 def setRadarFrequency(self, frequency=None):
410 def setRadarFrequency(self, frequency=None):
411 if frequency != None:
411 if frequency != None:
412 self.dataOut.frequency = frequency
412 self.dataOut.frequency = frequency
413
413
414 return 1
414 return 1
415
415
416 class CohInt(Operation):
416 class CohInt(Operation):
417
417
418 __isConfig = False
418 __isConfig = False
419
419
420 __profIndex = 0
420 __profIndex = 0
421 __withOverapping = False
421 __withOverapping = False
422
422
423 __byTime = False
423 __byTime = False
424 __initime = None
424 __initime = None
425 __lastdatatime = None
425 __lastdatatime = None
426 __integrationtime = None
426 __integrationtime = None
427
427
428 __buffer = None
428 __buffer = None
429
429
430 __dataReady = False
430 __dataReady = False
431
431
432 n = None
432 n = None
433
433
434
434
435 def __init__(self):
435 def __init__(self):
436
436
437 self.__isConfig = False
437 self.__isConfig = False
438
438
439 def setup(self, n=None, timeInterval=None, overlapping=False):
439 def setup(self, n=None, timeInterval=None, overlapping=False):
440 """
440 """
441 Set the parameters of the integration class.
441 Set the parameters of the integration class.
442
442
443 Inputs:
443 Inputs:
444
444
445 n : Number of coherent integrations
445 n : Number of coherent integrations
446 timeInterval : Time of integration. If the parameter "n" is selected this one does not work
446 timeInterval : Time of integration. If the parameter "n" is selected this one does not work
447 overlapping :
447 overlapping :
448
448
449 """
449 """
450
450
451 self.__initime = None
451 self.__initime = None
452 self.__lastdatatime = 0
452 self.__lastdatatime = 0
453 self.__buffer = None
453 self.__buffer = None
454 self.__dataReady = False
454 self.__dataReady = False
455
455
456
456
457 if n == None and timeInterval == None:
457 if n == None and timeInterval == None:
458 raise ValueError, "n or timeInterval should be specified ..."
458 raise ValueError, "n or timeInterval should be specified ..."
459
459
460 if n != None:
460 if n != None:
461 self.n = n
461 self.n = n
462 self.__byTime = False
462 self.__byTime = False
463 else:
463 else:
464 self.__integrationtime = timeInterval * 60. #if (type(timeInterval)!=integer) -> change this line
464 self.__integrationtime = timeInterval * 60. #if (type(timeInterval)!=integer) -> change this line
465 self.n = 9999
465 self.n = 9999
466 self.__byTime = True
466 self.__byTime = True
467
467
468 if overlapping:
468 if overlapping:
469 self.__withOverapping = True
469 self.__withOverapping = True
470 self.__buffer = None
470 self.__buffer = None
471 else:
471 else:
472 self.__withOverapping = False
472 self.__withOverapping = False
473 self.__buffer = 0
473 self.__buffer = 0
474
474
475 self.__profIndex = 0
475 self.__profIndex = 0
476
476
477 def putData(self, data):
477 def putData(self, data):
478
478
479 """
479 """
480 Add a profile to the __buffer and increase in one the __profileIndex
480 Add a profile to the __buffer and increase in one the __profileIndex
481
481
482 """
482 """
483
483
484 if not self.__withOverapping:
484 if not self.__withOverapping:
485 self.__buffer += data.copy()
485 self.__buffer += data.copy()
486 self.__profIndex += 1
486 self.__profIndex += 1
487 return
487 return
488
488
489 #Overlapping data
489 #Overlapping data
490 nChannels, nHeis = data.shape
490 nChannels, nHeis = data.shape
491 data = numpy.reshape(data, (1, nChannels, nHeis))
491 data = numpy.reshape(data, (1, nChannels, nHeis))
492
492
493 #If the buffer is empty then it takes the data value
493 #If the buffer is empty then it takes the data value
494 if self.__buffer == None:
494 if self.__buffer == None:
495 self.__buffer = data
495 self.__buffer = data
496 self.__profIndex += 1
496 self.__profIndex += 1
497 return
497 return
498
498
499 #If the buffer length is lower than n then stakcing the data value
499 #If the buffer length is lower than n then stakcing the data value
500 if self.__profIndex < self.n:
500 if self.__profIndex < self.n:
501 self.__buffer = numpy.vstack((self.__buffer, data))
501 self.__buffer = numpy.vstack((self.__buffer, data))
502 self.__profIndex += 1
502 self.__profIndex += 1
503 return
503 return
504
504
505 #If the buffer length is equal to n then replacing the last buffer value with the data value
505 #If the buffer length is equal to n then replacing the last buffer value with the data value
506 self.__buffer = numpy.roll(self.__buffer, -1, axis=0)
506 self.__buffer = numpy.roll(self.__buffer, -1, axis=0)
507 self.__buffer[self.n-1] = data
507 self.__buffer[self.n-1] = data
508 self.__profIndex = self.n
508 self.__profIndex = self.n
509 return
509 return
510
510
511
511
512 def pushData(self):
512 def pushData(self):
513 """
513 """
514 Return the sum of the last profiles and the profiles used in the sum.
514 Return the sum of the last profiles and the profiles used in the sum.
515
515
516 Affected:
516 Affected:
517
517
518 self.__profileIndex
518 self.__profileIndex
519
519
520 """
520 """
521
521
522 if not self.__withOverapping:
522 if not self.__withOverapping:
523 data = self.__buffer
523 data = self.__buffer
524 n = self.__profIndex
524 n = self.__profIndex
525
525
526 self.__buffer = 0
526 self.__buffer = 0
527 self.__profIndex = 0
527 self.__profIndex = 0
528
528
529 return data, n
529 return data, n
530
530
531 #Integration with Overlapping
531 #Integration with Overlapping
532 data = numpy.sum(self.__buffer, axis=0)
532 data = numpy.sum(self.__buffer, axis=0)
533 n = self.__profIndex
533 n = self.__profIndex
534
534
535 return data, n
535 return data, n
536
536
537 def byProfiles(self, data):
537 def byProfiles(self, data):
538
538
539 self.__dataReady = False
539 self.__dataReady = False
540 avgdata = None
540 avgdata = None
541 n = None
541 n = None
542
542
543 self.putData(data)
543 self.putData(data)
544
544
545 if self.__profIndex == self.n:
545 if self.__profIndex == self.n:
546
546
547 avgdata, n = self.pushData()
547 avgdata, n = self.pushData()
548 self.__dataReady = True
548 self.__dataReady = True
549
549
550 return avgdata
550 return avgdata
551
551
552 def byTime(self, data, datatime):
552 def byTime(self, data, datatime):
553
553
554 self.__dataReady = False
554 self.__dataReady = False
555 avgdata = None
555 avgdata = None
556 n = None
556 n = None
557
557
558 self.putData(data)
558 self.putData(data)
559
559
560 if (datatime - self.__initime) >= self.__integrationtime:
560 if (datatime - self.__initime) >= self.__integrationtime:
561 avgdata, n = self.pushData()
561 avgdata, n = self.pushData()
562 self.n = n
562 self.n = n
563 self.__dataReady = True
563 self.__dataReady = True
564
564
565 return avgdata
565 return avgdata
566
566
567 def integrate(self, data, datatime=None):
567 def integrate(self, data, datatime=None):
568
568
569 if self.__initime == None:
569 if self.__initime == None:
570 self.__initime = datatime
570 self.__initime = datatime
571
571
572 if self.__byTime:
572 if self.__byTime:
573 avgdata = self.byTime(data, datatime)
573 avgdata = self.byTime(data, datatime)
574 else:
574 else:
575 avgdata = self.byProfiles(data)
575 avgdata = self.byProfiles(data)
576
576
577
577
578 self.__lastdatatime = datatime
578 self.__lastdatatime = datatime
579
579
580 if avgdata == None:
580 if avgdata == None:
581 return None, None
581 return None, None
582
582
583 avgdatatime = self.__initime
583 avgdatatime = self.__initime
584
584
585 deltatime = datatime -self.__lastdatatime
585 deltatime = datatime -self.__lastdatatime
586
586
587 if not self.__withOverapping:
587 if not self.__withOverapping:
588 self.__initime = datatime
588 self.__initime = datatime
589 else:
589 else:
590 self.__initime += deltatime
590 self.__initime += deltatime
591
591
592 return avgdata, avgdatatime
592 return avgdata, avgdatatime
593
593
594 def run(self, dataOut, **kwargs):
594 def run(self, dataOut, **kwargs):
595
595
596 if not self.__isConfig:
596 if not self.__isConfig:
597 self.setup(**kwargs)
597 self.setup(**kwargs)
598 self.__isConfig = True
598 self.__isConfig = True
599
599
600 avgdata, avgdatatime = self.integrate(dataOut.data, dataOut.utctime)
600 avgdata, avgdatatime = self.integrate(dataOut.data, dataOut.utctime)
601
601
602 # dataOut.timeInterval *= n
602 # dataOut.timeInterval *= n
603 dataOut.flagNoData = True
603 dataOut.flagNoData = True
604
604
605 if self.__dataReady:
605 if self.__dataReady:
606 dataOut.data = avgdata
606 dataOut.data = avgdata
607 dataOut.nCohInt *= self.n
607 dataOut.nCohInt *= self.n
608 dataOut.utctime = avgdatatime
608 dataOut.utctime = avgdatatime
609 dataOut.timeInterval = dataOut.ippSeconds * dataOut.nCohInt
609 dataOut.timeInterval = dataOut.ippSeconds * dataOut.nCohInt
610 dataOut.flagNoData = False
610 dataOut.flagNoData = False
611
611
612
612
613 class Decoder(Operation):
613 class Decoder(Operation):
614
614
615 __isConfig = False
615 __isConfig = False
616 __profIndex = 0
616 __profIndex = 0
617
617
618 code = None
618 code = None
619
619
620 nCode = None
620 nCode = None
621 nBaud = None
621 nBaud = None
622
622
623 def __init__(self):
623 def __init__(self):
624
624
625 self.__isConfig = False
625 self.__isConfig = False
626
626
627 def setup(self, code, shape):
627 def setup(self, code, shape):
628
628
629 self.__profIndex = 0
629 self.__profIndex = 0
630
630
631 self.code = code
631 self.code = code
632
632
633 self.nCode = len(code)
633 self.nCode = len(code)
634 self.nBaud = len(code[0])
634 self.nBaud = len(code[0])
635
635
636 self.__nChannels, self.__nHeis = shape
636 self.__nChannels, self.__nHeis = shape
637
637
638 __codeBuffer = numpy.zeros((self.nCode, self.__nHeis), dtype=numpy.complex)
638 __codeBuffer = numpy.zeros((self.nCode, self.__nHeis), dtype=numpy.complex)
639
639
640 __codeBuffer[:,0:self.nBaud] = self.code
640 __codeBuffer[:,0:self.nBaud] = self.code
641
641
642 self.fft_code = numpy.conj(numpy.fft.fft(__codeBuffer, axis=1))
642 self.fft_code = numpy.conj(numpy.fft.fft(__codeBuffer, axis=1))
643
643
644 self.ndatadec = self.__nHeis - self.nBaud + 1
644 self.ndatadec = self.__nHeis - self.nBaud + 1
645
645
646 self.datadecTime = numpy.zeros((self.__nChannels, self.ndatadec), dtype=numpy.complex)
646 self.datadecTime = numpy.zeros((self.__nChannels, self.ndatadec), dtype=numpy.complex)
647
647
648 def convolutionInFreq(self, data):
648 def convolutionInFreq(self, data):
649
649
650 fft_code = self.fft_code[self.__profIndex].reshape(1,-1)
650 fft_code = self.fft_code[self.__profIndex].reshape(1,-1)
651
651
652 fft_data = numpy.fft.fft(data, axis=1)
652 fft_data = numpy.fft.fft(data, axis=1)
653
653
654 conv = fft_data*fft_code
654 conv = fft_data*fft_code
655
655
656 data = numpy.fft.ifft(conv,axis=1)
656 data = numpy.fft.ifft(conv,axis=1)
657
657
658 datadec = data[:,:-self.nBaud+1]
658 datadec = data[:,:-self.nBaud+1]
659
659
660 return datadec
660 return datadec
661
661
662 def convolutionInFreqOpt(self, data):
662 def convolutionInFreqOpt(self, data):
663
663
664 fft_code = self.fft_code[self.__profIndex].reshape(1,-1)
664 fft_code = self.fft_code[self.__profIndex].reshape(1,-1)
665
665
666 data = cfunctions.decoder(fft_code, data)
666 data = cfunctions.decoder(fft_code, data)
667
667
668 datadec = data[:,:-self.nBaud+1]
668 datadec = data[:,:-self.nBaud+1]
669
669
670 return datadec
670 return datadec
671
671
672 def convolutionInTime(self, data):
672 def convolutionInTime(self, data):
673
673
674 code = self.code[self.__profIndex]
674 code = self.code[self.__profIndex]
675
675
676 for i in range(self.__nChannels):
676 for i in range(self.__nChannels):
677 self.datadecTime[i,:] = numpy.correlate(data[i,:], code, mode='valid')
677 self.datadecTime[i,:] = numpy.correlate(data[i,:], code, mode='valid')
678
678
679 return self.datadecTime
679 return self.datadecTime
680
680
681 def run(self, dataOut, code=None, nCode=None, nBaud=None, mode = 0):
681 def run(self, dataOut, code=None, nCode=None, nBaud=None, mode = 0):
682
682
683 if code == None:
683 if code == None:
684 code = dataOut.code
684 code = dataOut.code
685 else:
685 else:
686 code = numpy.array(code).reshape(nCode,nBaud)
686 code = numpy.array(code).reshape(nCode,nBaud)
687 dataOut.code = code
687 dataOut.code = code
688 dataOut.nCode = nCode
688 dataOut.nCode = nCode
689 dataOut.nBaud = nBaud
689 dataOut.nBaud = nBaud
690 dataOut.radarControllerHeaderObj.code = code
690 dataOut.radarControllerHeaderObj.code = code
691 dataOut.radarControllerHeaderObj.nCode = nCode
691 dataOut.radarControllerHeaderObj.nCode = nCode
692 dataOut.radarControllerHeaderObj.nBaud = nBaud
692 dataOut.radarControllerHeaderObj.nBaud = nBaud
693
693
694
694
695 if not self.__isConfig:
695 if not self.__isConfig:
696
696
697 self.setup(code, dataOut.data.shape)
697 self.setup(code, dataOut.data.shape)
698 self.__isConfig = True
698 self.__isConfig = True
699
699
700 if mode == 0:
700 if mode == 0:
701 datadec = self.convolutionInTime(dataOut.data)
701 datadec = self.convolutionInTime(dataOut.data)
702
702
703 if mode == 1:
703 if mode == 1:
704 datadec = self.convolutionInFreq(dataOut.data)
704 datadec = self.convolutionInFreq(dataOut.data)
705
705
706 if mode == 2:
706 if mode == 2:
707 datadec = self.convolutionInFreqOpt(dataOut.data)
707 datadec = self.convolutionInFreqOpt(dataOut.data)
708
708
709 dataOut.data = datadec
709 dataOut.data = datadec
710
710
711 dataOut.heightList = dataOut.heightList[0:self.ndatadec]
711 dataOut.heightList = dataOut.heightList[0:self.ndatadec]
712
712
713 dataOut.flagDecodeData = True #asumo q la data no esta decodificada
713 dataOut.flagDecodeData = True #asumo q la data no esta decodificada
714
714
715 if self.__profIndex == self.nCode-1:
715 if self.__profIndex == self.nCode-1:
716 self.__profIndex = 0
716 self.__profIndex = 0
717 return 1
717 return 1
718
718
719 self.__profIndex += 1
719 self.__profIndex += 1
720
720
721 return 1
721 return 1
722 # dataOut.flagDeflipData = True #asumo q la data no esta sin flip
722 # dataOut.flagDeflipData = True #asumo q la data no esta sin flip
723
723
724
724
725
725
726 class SpectraProc(ProcessingUnit):
726 class SpectraProc(ProcessingUnit):
727
727
728 def __init__(self):
728 def __init__(self):
729
729
730 self.objectDict = {}
730 self.objectDict = {}
731 self.buffer = None
731 self.buffer = None
732 self.firstdatatime = None
732 self.firstdatatime = None
733 self.profIndex = 0
733 self.profIndex = 0
734 self.dataOut = Spectra()
734 self.dataOut = Spectra()
735
735
736 def __updateObjFromInput(self):
736 def __updateObjFromInput(self):
737
737
738 self.dataOut.timeZone = self.dataIn.timeZone
738 self.dataOut.timeZone = self.dataIn.timeZone
739 self.dataOut.dstFlag = self.dataIn.dstFlag
739 self.dataOut.dstFlag = self.dataIn.dstFlag
740 self.dataOut.errorCount = self.dataIn.errorCount
740 self.dataOut.errorCount = self.dataIn.errorCount
741 self.dataOut.useLocalTime = self.dataIn.useLocalTime
741 self.dataOut.useLocalTime = self.dataIn.useLocalTime
742
742
743 self.dataOut.radarControllerHeaderObj = self.dataIn.radarControllerHeaderObj.copy()
743 self.dataOut.radarControllerHeaderObj = self.dataIn.radarControllerHeaderObj.copy()
744 self.dataOut.systemHeaderObj = self.dataIn.systemHeaderObj.copy()
744 self.dataOut.systemHeaderObj = self.dataIn.systemHeaderObj.copy()
745 self.dataOut.channelList = self.dataIn.channelList
745 self.dataOut.channelList = self.dataIn.channelList
746 self.dataOut.heightList = self.dataIn.heightList
746 self.dataOut.heightList = self.dataIn.heightList
747 self.dataOut.dtype = numpy.dtype([('real','<f4'),('imag','<f4')])
747 self.dataOut.dtype = numpy.dtype([('real','<f4'),('imag','<f4')])
748 # self.dataOut.nHeights = self.dataIn.nHeights
748 # self.dataOut.nHeights = self.dataIn.nHeights
749 # self.dataOut.nChannels = self.dataIn.nChannels
749 # self.dataOut.nChannels = self.dataIn.nChannels
750 self.dataOut.nBaud = self.dataIn.nBaud
750 self.dataOut.nBaud = self.dataIn.nBaud
751 self.dataOut.nCode = self.dataIn.nCode
751 self.dataOut.nCode = self.dataIn.nCode
752 self.dataOut.code = self.dataIn.code
752 self.dataOut.code = self.dataIn.code
753 self.dataOut.nProfiles = self.dataOut.nFFTPoints
753 self.dataOut.nProfiles = self.dataOut.nFFTPoints
754 # self.dataOut.channelIndexList = self.dataIn.channelIndexList
754 # self.dataOut.channelIndexList = self.dataIn.channelIndexList
755 self.dataOut.flagTimeBlock = self.dataIn.flagTimeBlock
755 self.dataOut.flagTimeBlock = self.dataIn.flagTimeBlock
756 self.dataOut.utctime = self.firstdatatime
756 self.dataOut.utctime = self.firstdatatime
757 self.dataOut.flagDecodeData = self.dataIn.flagDecodeData #asumo q la data esta decodificada
757 self.dataOut.flagDecodeData = self.dataIn.flagDecodeData #asumo q la data esta decodificada
758 self.dataOut.flagDeflipData = self.dataIn.flagDeflipData #asumo q la data esta sin flip
758 self.dataOut.flagDeflipData = self.dataIn.flagDeflipData #asumo q la data esta sin flip
759 # self.dataOut.flagShiftFFT = self.dataIn.flagShiftFFT
759 # self.dataOut.flagShiftFFT = self.dataIn.flagShiftFFT
760 self.dataOut.nCohInt = self.dataIn.nCohInt
760 self.dataOut.nCohInt = self.dataIn.nCohInt
761 self.dataOut.nIncohInt = 1
761 self.dataOut.nIncohInt = 1
762 self.dataOut.ippSeconds = self.dataIn.ippSeconds
762 self.dataOut.ippSeconds = self.dataIn.ippSeconds
763 self.dataOut.windowOfFilter = self.dataIn.windowOfFilter
763 self.dataOut.windowOfFilter = self.dataIn.windowOfFilter
764
764
765 self.dataOut.timeInterval = self.dataIn.timeInterval*self.dataOut.nFFTPoints*self.dataOut.nIncohInt
765 self.dataOut.timeInterval = self.dataIn.timeInterval*self.dataOut.nFFTPoints*self.dataOut.nIncohInt
766 self.dataOut.frequency = self.dataIn.frequency
766 self.dataOut.frequency = self.dataIn.frequency
767 self.dataOut.realtime = self.dataIn.realtime
767 self.dataOut.realtime = self.dataIn.realtime
768
768
769 def __getFft(self):
769 def __getFft(self):
770 """
770 """
771 Convierte valores de Voltaje a Spectra
771 Convierte valores de Voltaje a Spectra
772
772
773 Affected:
773 Affected:
774 self.dataOut.data_spc
774 self.dataOut.data_spc
775 self.dataOut.data_cspc
775 self.dataOut.data_cspc
776 self.dataOut.data_dc
776 self.dataOut.data_dc
777 self.dataOut.heightList
777 self.dataOut.heightList
778 self.profIndex
778 self.profIndex
779 self.buffer
779 self.buffer
780 self.dataOut.flagNoData
780 self.dataOut.flagNoData
781 """
781 """
782 fft_volt = numpy.fft.fft(self.buffer,n=self.dataOut.nFFTPoints,axis=1)
782 fft_volt = numpy.fft.fft(self.buffer,n=self.dataOut.nFFTPoints,axis=1)
783 fft_volt = fft_volt.astype(numpy.dtype('complex'))
783 fft_volt = fft_volt.astype(numpy.dtype('complex'))
784 dc = fft_volt[:,0,:]
784 dc = fft_volt[:,0,:]
785
785
786 #calculo de self-spectra
786 #calculo de self-spectra
787 fft_volt = numpy.fft.fftshift(fft_volt,axes=(1,))
787 fft_volt = numpy.fft.fftshift(fft_volt,axes=(1,))
788 spc = fft_volt * numpy.conjugate(fft_volt)
788 spc = fft_volt * numpy.conjugate(fft_volt)
789 spc = spc.real
789 spc = spc.real
790
790
791 blocksize = 0
791 blocksize = 0
792 blocksize += dc.size
792 blocksize += dc.size
793 blocksize += spc.size
793 blocksize += spc.size
794
794
795 cspc = None
795 cspc = None
796 pairIndex = 0
796 pairIndex = 0
797 if self.dataOut.pairsList != None:
797 if self.dataOut.pairsList != None:
798 #calculo de cross-spectra
798 #calculo de cross-spectra
799 cspc = numpy.zeros((self.dataOut.nPairs, self.dataOut.nFFTPoints, self.dataOut.nHeights), dtype='complex')
799 cspc = numpy.zeros((self.dataOut.nPairs, self.dataOut.nFFTPoints, self.dataOut.nHeights), dtype='complex')
800 for pair in self.dataOut.pairsList:
800 for pair in self.dataOut.pairsList:
801 cspc[pairIndex,:,:] = fft_volt[pair[0],:,:] * numpy.conjugate(fft_volt[pair[1],:,:])
801 cspc[pairIndex,:,:] = fft_volt[pair[0],:,:] * numpy.conjugate(fft_volt[pair[1],:,:])
802 pairIndex += 1
802 pairIndex += 1
803 blocksize += cspc.size
803 blocksize += cspc.size
804
804
805 self.dataOut.data_spc = spc
805 self.dataOut.data_spc = spc
806 self.dataOut.data_cspc = cspc
806 self.dataOut.data_cspc = cspc
807 self.dataOut.data_dc = dc
807 self.dataOut.data_dc = dc
808 self.dataOut.blockSize = blocksize
808 self.dataOut.blockSize = blocksize
809 self.dataOut.flagShiftFFT = False
809 self.dataOut.flagShiftFFT = False
810
810
811 def init(self, nProfiles=None, nFFTPoints=None, pairsList=None, ippFactor=None):
811 def init(self, nProfiles=None, nFFTPoints=None, pairsList=None, ippFactor=None):
812
812
813 self.dataOut.flagNoData = True
813 self.dataOut.flagNoData = True
814
814
815 if self.dataIn.type == "Spectra":
815 if self.dataIn.type == "Spectra":
816 self.dataOut.copy(self.dataIn)
816 self.dataOut.copy(self.dataIn)
817 return
817 return
818
818
819 if self.dataIn.type == "Voltage":
819 if self.dataIn.type == "Voltage":
820
820
821 if nFFTPoints == None:
821 if nFFTPoints == None:
822 raise ValueError, "This SpectraProc.init() need nFFTPoints input variable"
822 raise ValueError, "This SpectraProc.init() need nFFTPoints input variable"
823
823
824 if pairsList == None:
824 if pairsList == None:
825 nPairs = 0
825 nPairs = 0
826 else:
826 else:
827 nPairs = len(pairsList)
827 nPairs = len(pairsList)
828
828
829 if ippFactor == None:
829 if ippFactor == None:
830 ippFactor = 1
830 ippFactor = 1
831 self.dataOut.ippFactor = ippFactor
831 self.dataOut.ippFactor = ippFactor
832
832
833 self.dataOut.nFFTPoints = nFFTPoints
833 self.dataOut.nFFTPoints = nFFTPoints
834 self.dataOut.pairsList = pairsList
834 self.dataOut.pairsList = pairsList
835 self.dataOut.nPairs = nPairs
835 self.dataOut.nPairs = nPairs
836
836
837 if self.buffer == None:
837 if self.buffer == None:
838 self.buffer = numpy.zeros((self.dataIn.nChannels,
838 self.buffer = numpy.zeros((self.dataIn.nChannels,
839 nProfiles,
839 nProfiles,
840 self.dataIn.nHeights),
840 self.dataIn.nHeights),
841 dtype='complex')
841 dtype='complex')
842
842
843
843
844 self.buffer[:,self.profIndex,:] = self.dataIn.data.copy()
844 self.buffer[:,self.profIndex,:] = self.dataIn.data.copy()
845 self.profIndex += 1
845 self.profIndex += 1
846
846
847 if self.firstdatatime == None:
847 if self.firstdatatime == None:
848 self.firstdatatime = self.dataIn.utctime
848 self.firstdatatime = self.dataIn.utctime
849
849
850 if self.profIndex == nProfiles:
850 if self.profIndex == nProfiles:
851 self.__updateObjFromInput()
851 self.__updateObjFromInput()
852 self.__getFft()
852 self.__getFft()
853
853
854 self.dataOut.flagNoData = False
854 self.dataOut.flagNoData = False
855
855
856 self.buffer = None
856 self.buffer = None
857 self.firstdatatime = None
857 self.firstdatatime = None
858 self.profIndex = 0
858 self.profIndex = 0
859
859
860 return
860 return
861
861
862 raise ValueError, "The type object %s is not valid"%(self.dataIn.type)
862 raise ValueError, "The type object %s is not valid"%(self.dataIn.type)
863
863
864 def selectChannels(self, channelList):
864 def selectChannels(self, channelList):
865
865
866 channelIndexList = []
866 channelIndexList = []
867
867
868 for channel in channelList:
868 for channel in channelList:
869 index = self.dataOut.channelList.index(channel)
869 index = self.dataOut.channelList.index(channel)
870 channelIndexList.append(index)
870 channelIndexList.append(index)
871
871
872 self.selectChannelsByIndex(channelIndexList)
872 self.selectChannelsByIndex(channelIndexList)
873
873
874 def selectChannelsByIndex(self, channelIndexList):
874 def selectChannelsByIndex(self, channelIndexList):
875 """
875 """
876 Selecciona un bloque de datos en base a canales segun el channelIndexList
876 Selecciona un bloque de datos en base a canales segun el channelIndexList
877
877
878 Input:
878 Input:
879 channelIndexList : lista sencilla de canales a seleccionar por ej. [2,3,7]
879 channelIndexList : lista sencilla de canales a seleccionar por ej. [2,3,7]
880
880
881 Affected:
881 Affected:
882 self.dataOut.data_spc
882 self.dataOut.data_spc
883 self.dataOut.channelIndexList
883 self.dataOut.channelIndexList
884 self.dataOut.nChannels
884 self.dataOut.nChannels
885
885
886 Return:
886 Return:
887 None
887 None
888 """
888 """
889
889
890 for channelIndex in channelIndexList:
890 for channelIndex in channelIndexList:
891 if channelIndex not in self.dataOut.channelIndexList:
891 if channelIndex not in self.dataOut.channelIndexList:
892 print channelIndexList
892 print channelIndexList
893 raise ValueError, "The value %d in channelIndexList is not valid" %channelIndex
893 raise ValueError, "The value %d in channelIndexList is not valid" %channelIndex
894
894
895 nChannels = len(channelIndexList)
895 nChannels = len(channelIndexList)
896
896
897 data_spc = self.dataOut.data_spc[channelIndexList,:]
897 data_spc = self.dataOut.data_spc[channelIndexList,:]
898
898
899 self.dataOut.data_spc = data_spc
899 self.dataOut.data_spc = data_spc
900 self.dataOut.channelList = [self.dataOut.channelList[i] for i in channelIndexList]
900 self.dataOut.channelList = [self.dataOut.channelList[i] for i in channelIndexList]
901 # self.dataOut.nChannels = nChannels
901 # self.dataOut.nChannels = nChannels
902
902
903 return 1
903 return 1
904
904
905 def selectHeights(self, minHei, maxHei):
905 def selectHeights(self, minHei, maxHei):
906 """
906 """
907 Selecciona un bloque de datos en base a un grupo de valores de alturas segun el rango
907 Selecciona un bloque de datos en base a un grupo de valores de alturas segun el rango
908 minHei <= height <= maxHei
908 minHei <= height <= maxHei
909
909
910 Input:
910 Input:
911 minHei : valor minimo de altura a considerar
911 minHei : valor minimo de altura a considerar
912 maxHei : valor maximo de altura a considerar
912 maxHei : valor maximo de altura a considerar
913
913
914 Affected:
914 Affected:
915 Indirectamente son cambiados varios valores a travez del metodo selectHeightsByIndex
915 Indirectamente son cambiados varios valores a travez del metodo selectHeightsByIndex
916
916
917 Return:
917 Return:
918 1 si el metodo se ejecuto con exito caso contrario devuelve 0
918 1 si el metodo se ejecuto con exito caso contrario devuelve 0
919 """
919 """
920 if (minHei < self.dataOut.heightList[0]) or (minHei > maxHei):
920 if (minHei < self.dataOut.heightList[0]) or (minHei > maxHei):
921 raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
921 raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
922
922
923 if (maxHei > self.dataOut.heightList[-1]):
923 if (maxHei > self.dataOut.heightList[-1]):
924 maxHei = self.dataOut.heightList[-1]
924 maxHei = self.dataOut.heightList[-1]
925 # raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
925 # raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
926
926
927 minIndex = 0
927 minIndex = 0
928 maxIndex = 0
928 maxIndex = 0
929 heights = self.dataOut.heightList
929 heights = self.dataOut.heightList
930
930
931 inda = numpy.where(heights >= minHei)
931 inda = numpy.where(heights >= minHei)
932 indb = numpy.where(heights <= maxHei)
932 indb = numpy.where(heights <= maxHei)
933
933
934 try:
934 try:
935 minIndex = inda[0][0]
935 minIndex = inda[0][0]
936 except:
936 except:
937 minIndex = 0
937 minIndex = 0
938
938
939 try:
939 try:
940 maxIndex = indb[0][-1]
940 maxIndex = indb[0][-1]
941 except:
941 except:
942 maxIndex = len(heights)
942 maxIndex = len(heights)
943
943
944 self.selectHeightsByIndex(minIndex, maxIndex)
944 self.selectHeightsByIndex(minIndex, maxIndex)
945
945
946 return 1
946 return 1
947
947
948 def getBeaconSignal(self, tauindex = 0, channelindex = 0, hei_ref=None):
948 def getBeaconSignal(self, tauindex = 0, channelindex = 0, hei_ref=None):
949 newheis = numpy.where(self.dataOut.heightList>self.dataOut.radarControllerHeaderObj.Taus[tauindex])
949 newheis = numpy.where(self.dataOut.heightList>self.dataOut.radarControllerHeaderObj.Taus[tauindex])
950
950
951 if hei_ref != None:
951 if hei_ref != None:
952 newheis = numpy.where(self.dataOut.heightList>hei_ref)
952 newheis = numpy.where(self.dataOut.heightList>hei_ref)
953
953
954 minIndex = min(newheis[0])
954 minIndex = min(newheis[0])
955 maxIndex = max(newheis[0])
955 maxIndex = max(newheis[0])
956 data_spc = self.dataOut.data_spc[:,:,minIndex:maxIndex+1]
956 data_spc = self.dataOut.data_spc[:,:,minIndex:maxIndex+1]
957 heightList = self.dataOut.heightList[minIndex:maxIndex+1]
957 heightList = self.dataOut.heightList[minIndex:maxIndex+1]
958
958
959 # determina indices
959 # determina indices
960 nheis = int(self.dataOut.radarControllerHeaderObj.txB/(self.dataOut.heightList[1]-self.dataOut.heightList[0]))
960 nheis = int(self.dataOut.radarControllerHeaderObj.txB/(self.dataOut.heightList[1]-self.dataOut.heightList[0]))
961 avg_dB = 10*numpy.log10(numpy.sum(data_spc[channelindex,:,:],axis=0))
961 avg_dB = 10*numpy.log10(numpy.sum(data_spc[channelindex,:,:],axis=0))
962 beacon_dB = numpy.sort(avg_dB)[-nheis:]
962 beacon_dB = numpy.sort(avg_dB)[-nheis:]
963 beacon_heiIndexList = []
963 beacon_heiIndexList = []
964 for val in avg_dB.tolist():
964 for val in avg_dB.tolist():
965 if val >= beacon_dB[0]:
965 if val >= beacon_dB[0]:
966 beacon_heiIndexList.append(avg_dB.tolist().index(val))
966 beacon_heiIndexList.append(avg_dB.tolist().index(val))
967
967
968 #data_spc = data_spc[:,:,beacon_heiIndexList]
968 #data_spc = data_spc[:,:,beacon_heiIndexList]
969 data_cspc = None
969 data_cspc = None
970 if self.dataOut.data_cspc != None:
970 if self.dataOut.data_cspc != None:
971 data_cspc = self.dataOut.data_cspc[:,:,minIndex:maxIndex+1]
971 data_cspc = self.dataOut.data_cspc[:,:,minIndex:maxIndex+1]
972 #data_cspc = data_cspc[:,:,beacon_heiIndexList]
972 #data_cspc = data_cspc[:,:,beacon_heiIndexList]
973
973
974 data_dc = None
974 data_dc = None
975 if self.dataOut.data_dc != None:
975 if self.dataOut.data_dc != None:
976 data_dc = self.dataOut.data_dc[:,minIndex:maxIndex+1]
976 data_dc = self.dataOut.data_dc[:,minIndex:maxIndex+1]
977 #data_dc = data_dc[:,beacon_heiIndexList]
977 #data_dc = data_dc[:,beacon_heiIndexList]
978
978
979 self.dataOut.data_spc = data_spc
979 self.dataOut.data_spc = data_spc
980 self.dataOut.data_cspc = data_cspc
980 self.dataOut.data_cspc = data_cspc
981 self.dataOut.data_dc = data_dc
981 self.dataOut.data_dc = data_dc
982 self.dataOut.heightList = heightList
982 self.dataOut.heightList = heightList
983 self.dataOut.beacon_heiIndexList = beacon_heiIndexList
983 self.dataOut.beacon_heiIndexList = beacon_heiIndexList
984
984
985 return 1
985 return 1
986
986
987
987
988 def selectHeightsByIndex(self, minIndex, maxIndex):
988 def selectHeightsByIndex(self, minIndex, maxIndex):
989 """
989 """
990 Selecciona un bloque de datos en base a un grupo indices de alturas segun el rango
990 Selecciona un bloque de datos en base a un grupo indices de alturas segun el rango
991 minIndex <= index <= maxIndex
991 minIndex <= index <= maxIndex
992
992
993 Input:
993 Input:
994 minIndex : valor de indice minimo de altura a considerar
994 minIndex : valor de indice minimo de altura a considerar
995 maxIndex : valor de indice maximo de altura a considerar
995 maxIndex : valor de indice maximo de altura a considerar
996
996
997 Affected:
997 Affected:
998 self.dataOut.data_spc
998 self.dataOut.data_spc
999 self.dataOut.data_cspc
999 self.dataOut.data_cspc
1000 self.dataOut.data_dc
1000 self.dataOut.data_dc
1001 self.dataOut.heightList
1001 self.dataOut.heightList
1002
1002
1003 Return:
1003 Return:
1004 1 si el metodo se ejecuto con exito caso contrario devuelve 0
1004 1 si el metodo se ejecuto con exito caso contrario devuelve 0
1005 """
1005 """
1006
1006
1007 if (minIndex < 0) or (minIndex > maxIndex):
1007 if (minIndex < 0) or (minIndex > maxIndex):
1008 raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
1008 raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
1009
1009
1010 if (maxIndex >= self.dataOut.nHeights):
1010 if (maxIndex >= self.dataOut.nHeights):
1011 maxIndex = self.dataOut.nHeights-1
1011 maxIndex = self.dataOut.nHeights-1
1012 # raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
1012 # raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
1013
1013
1014 nHeights = maxIndex - minIndex + 1
1014 nHeights = maxIndex - minIndex + 1
1015
1015
1016 #Spectra
1016 #Spectra
1017 data_spc = self.dataOut.data_spc[:,:,minIndex:maxIndex+1]
1017 data_spc = self.dataOut.data_spc[:,:,minIndex:maxIndex+1]
1018
1018
1019 data_cspc = None
1019 data_cspc = None
1020 if self.dataOut.data_cspc != None:
1020 if self.dataOut.data_cspc != None:
1021 data_cspc = self.dataOut.data_cspc[:,:,minIndex:maxIndex+1]
1021 data_cspc = self.dataOut.data_cspc[:,:,minIndex:maxIndex+1]
1022
1022
1023 data_dc = None
1023 data_dc = None
1024 if self.dataOut.data_dc != None:
1024 if self.dataOut.data_dc != None:
1025 data_dc = self.dataOut.data_dc[:,minIndex:maxIndex+1]
1025 data_dc = self.dataOut.data_dc[:,minIndex:maxIndex+1]
1026
1026
1027 self.dataOut.data_spc = data_spc
1027 self.dataOut.data_spc = data_spc
1028 self.dataOut.data_cspc = data_cspc
1028 self.dataOut.data_cspc = data_cspc
1029 self.dataOut.data_dc = data_dc
1029 self.dataOut.data_dc = data_dc
1030
1030
1031 self.dataOut.heightList = self.dataOut.heightList[minIndex:maxIndex+1]
1031 self.dataOut.heightList = self.dataOut.heightList[minIndex:maxIndex+1]
1032
1032
1033 return 1
1033 return 1
1034
1034
1035 def removeDC(self, mode = 2):
1035 def removeDC(self, mode = 2):
1036 jspectra = self.dataOut.data_spc
1036 jspectra = self.dataOut.data_spc
1037 jcspectra = self.dataOut.data_cspc
1037 jcspectra = self.dataOut.data_cspc
1038
1038
1039
1039
1040 num_chan = jspectra.shape[0]
1040 num_chan = jspectra.shape[0]
1041 num_hei = jspectra.shape[2]
1041 num_hei = jspectra.shape[2]
1042
1042
1043 if jcspectra != None:
1043 if jcspectra != None:
1044 jcspectraExist = True
1044 jcspectraExist = True
1045 num_pairs = jcspectra.shape[0]
1045 num_pairs = jcspectra.shape[0]
1046 else: jcspectraExist = False
1046 else: jcspectraExist = False
1047
1047
1048 freq_dc = jspectra.shape[1]/2
1048 freq_dc = jspectra.shape[1]/2
1049 ind_vel = numpy.array([-2,-1,1,2]) + freq_dc
1049 ind_vel = numpy.array([-2,-1,1,2]) + freq_dc
1050
1050
1051 if ind_vel[0]<0:
1051 if ind_vel[0]<0:
1052 ind_vel[range(0,1)] = ind_vel[range(0,1)] + self.num_prof
1052 ind_vel[range(0,1)] = ind_vel[range(0,1)] + self.num_prof
1053
1053
1054 if mode == 1:
1054 if mode == 1:
1055 jspectra[:,freq_dc,:] = (jspectra[:,ind_vel[1],:] + jspectra[:,ind_vel[2],:])/2 #CORRECCION
1055 jspectra[:,freq_dc,:] = (jspectra[:,ind_vel[1],:] + jspectra[:,ind_vel[2],:])/2 #CORRECCION
1056
1056
1057 if jcspectraExist:
1057 if jcspectraExist:
1058 jcspectra[:,freq_dc,:] = (jcspectra[:,ind_vel[1],:] + jcspectra[:,ind_vel[2],:])/2
1058 jcspectra[:,freq_dc,:] = (jcspectra[:,ind_vel[1],:] + jcspectra[:,ind_vel[2],:])/2
1059
1059
1060 if mode == 2:
1060 if mode == 2:
1061
1061
1062 vel = numpy.array([-2,-1,1,2])
1062 vel = numpy.array([-2,-1,1,2])
1063 xx = numpy.zeros([4,4])
1063 xx = numpy.zeros([4,4])
1064
1064
1065 for fil in range(4):
1065 for fil in range(4):
1066 xx[fil,:] = vel[fil]**numpy.asarray(range(4))
1066 xx[fil,:] = vel[fil]**numpy.asarray(range(4))
1067
1067
1068 xx_inv = numpy.linalg.inv(xx)
1068 xx_inv = numpy.linalg.inv(xx)
1069 xx_aux = xx_inv[0,:]
1069 xx_aux = xx_inv[0,:]
1070
1070
1071 for ich in range(num_chan):
1071 for ich in range(num_chan):
1072 yy = jspectra[ich,ind_vel,:]
1072 yy = jspectra[ich,ind_vel,:]
1073 jspectra[ich,freq_dc,:] = numpy.dot(xx_aux,yy)
1073 jspectra[ich,freq_dc,:] = numpy.dot(xx_aux,yy)
1074
1074
1075 junkid = jspectra[ich,freq_dc,:]<=0
1075 junkid = jspectra[ich,freq_dc,:]<=0
1076 cjunkid = sum(junkid)
1076 cjunkid = sum(junkid)
1077
1077
1078 if cjunkid.any():
1078 if cjunkid.any():
1079 jspectra[ich,freq_dc,junkid.nonzero()] = (jspectra[ich,ind_vel[1],junkid] + jspectra[ich,ind_vel[2],junkid])/2
1079 jspectra[ich,freq_dc,junkid.nonzero()] = (jspectra[ich,ind_vel[1],junkid] + jspectra[ich,ind_vel[2],junkid])/2
1080
1080
1081 if jcspectraExist:
1081 if jcspectraExist:
1082 for ip in range(num_pairs):
1082 for ip in range(num_pairs):
1083 yy = jcspectra[ip,ind_vel,:]
1083 yy = jcspectra[ip,ind_vel,:]
1084 jcspectra[ip,freq_dc,:] = numpy.dot(xx_aux,yy)
1084 jcspectra[ip,freq_dc,:] = numpy.dot(xx_aux,yy)
1085
1085
1086
1086
1087 self.dataOut.data_spc = jspectra
1087 self.dataOut.data_spc = jspectra
1088 self.dataOut.data_cspc = jcspectra
1088 self.dataOut.data_cspc = jcspectra
1089
1089
1090 return 1
1090 return 1
1091
1091
1092 def removeInterference(self, interf = 2,hei_interf = None, nhei_interf = None, offhei_interf = None):
1092 def removeInterference(self, interf = 2,hei_interf = None, nhei_interf = None, offhei_interf = None):
1093
1093
1094 jspectra = self.dataOut.data_spc
1094 jspectra = self.dataOut.data_spc
1095 jcspectra = self.dataOut.data_cspc
1095 jcspectra = self.dataOut.data_cspc
1096 jnoise = self.dataOut.getNoise()
1096 jnoise = self.dataOut.getNoise()
1097 num_incoh = self.dataOut.nIncohInt
1097 num_incoh = self.dataOut.nIncohInt
1098
1098
1099 num_channel = jspectra.shape[0]
1099 num_channel = jspectra.shape[0]
1100 num_prof = jspectra.shape[1]
1100 num_prof = jspectra.shape[1]
1101 num_hei = jspectra.shape[2]
1101 num_hei = jspectra.shape[2]
1102
1102
1103 #hei_interf
1103 #hei_interf
1104 if hei_interf == None:
1104 if hei_interf == None:
1105 count_hei = num_hei/2 #Como es entero no importa
1105 count_hei = num_hei/2 #Como es entero no importa
1106 hei_interf = numpy.asmatrix(range(count_hei)) + num_hei - count_hei
1106 hei_interf = numpy.asmatrix(range(count_hei)) + num_hei - count_hei
1107 hei_interf = numpy.asarray(hei_interf)[0]
1107 hei_interf = numpy.asarray(hei_interf)[0]
1108 #nhei_interf
1108 #nhei_interf
1109 if (nhei_interf == None):
1109 if (nhei_interf == None):
1110 nhei_interf = 5
1110 nhei_interf = 5
1111 if (nhei_interf < 1):
1111 if (nhei_interf < 1):
1112 nhei_interf = 1
1112 nhei_interf = 1
1113 if (nhei_interf > count_hei):
1113 if (nhei_interf > count_hei):
1114 nhei_interf = count_hei
1114 nhei_interf = count_hei
1115 if (offhei_interf == None):
1115 if (offhei_interf == None):
1116 offhei_interf = 0
1116 offhei_interf = 0
1117
1117
1118 ind_hei = range(num_hei)
1118 ind_hei = range(num_hei)
1119 # mask_prof = numpy.asarray(range(num_prof - 2)) + 1
1119 # mask_prof = numpy.asarray(range(num_prof - 2)) + 1
1120 # mask_prof[range(num_prof/2 - 1,len(mask_prof))] += 1
1120 # mask_prof[range(num_prof/2 - 1,len(mask_prof))] += 1
1121 mask_prof = numpy.asarray(range(num_prof))
1121 mask_prof = numpy.asarray(range(num_prof))
1122 num_mask_prof = mask_prof.size
1122 num_mask_prof = mask_prof.size
1123 comp_mask_prof = [0, num_prof/2]
1123 comp_mask_prof = [0, num_prof/2]
1124
1124
1125
1125
1126 #noise_exist: Determina si la variable jnoise ha sido definida y contiene la informacion del ruido de cada canal
1126 #noise_exist: Determina si la variable jnoise ha sido definida y contiene la informacion del ruido de cada canal
1127 if (jnoise.size < num_channel or numpy.isnan(jnoise).any()):
1127 if (jnoise.size < num_channel or numpy.isnan(jnoise).any()):
1128 jnoise = numpy.nan
1128 jnoise = numpy.nan
1129 noise_exist = jnoise[0] < numpy.Inf
1129 noise_exist = jnoise[0] < numpy.Inf
1130
1130
1131 #Subrutina de Remocion de la Interferencia
1131 #Subrutina de Remocion de la Interferencia
1132 for ich in range(num_channel):
1132 for ich in range(num_channel):
1133 #Se ordena los espectros segun su potencia (menor a mayor)
1133 #Se ordena los espectros segun su potencia (menor a mayor)
1134 power = jspectra[ich,mask_prof,:]
1134 power = jspectra[ich,mask_prof,:]
1135 power = power[:,hei_interf]
1135 power = power[:,hei_interf]
1136 power = power.sum(axis = 0)
1136 power = power.sum(axis = 0)
1137 psort = power.ravel().argsort()
1137 psort = power.ravel().argsort()
1138
1138
1139 #Se estima la interferencia promedio en los Espectros de Potencia empleando
1139 #Se estima la interferencia promedio en los Espectros de Potencia empleando
1140 junkspc_interf = jspectra[ich,:,hei_interf[psort[range(offhei_interf, nhei_interf + offhei_interf)]]]
1140 junkspc_interf = jspectra[ich,:,hei_interf[psort[range(offhei_interf, nhei_interf + offhei_interf)]]]
1141
1141
1142 if noise_exist:
1142 if noise_exist:
1143 # tmp_noise = jnoise[ich] / num_prof
1143 # tmp_noise = jnoise[ich] / num_prof
1144 tmp_noise = jnoise[ich]
1144 tmp_noise = jnoise[ich]
1145 junkspc_interf = junkspc_interf - tmp_noise
1145 junkspc_interf = junkspc_interf - tmp_noise
1146 #junkspc_interf[:,comp_mask_prof] = 0
1146 #junkspc_interf[:,comp_mask_prof] = 0
1147
1147
1148 jspc_interf = junkspc_interf.sum(axis = 0) / nhei_interf
1148 jspc_interf = junkspc_interf.sum(axis = 0) / nhei_interf
1149 jspc_interf = jspc_interf.transpose()
1149 jspc_interf = jspc_interf.transpose()
1150 #Calculando el espectro de interferencia promedio
1150 #Calculando el espectro de interferencia promedio
1151 noiseid = numpy.where(jspc_interf <= tmp_noise/ math.sqrt(num_incoh))
1151 noiseid = numpy.where(jspc_interf <= tmp_noise/ math.sqrt(num_incoh))
1152 noiseid = noiseid[0]
1152 noiseid = noiseid[0]
1153 cnoiseid = noiseid.size
1153 cnoiseid = noiseid.size
1154 interfid = numpy.where(jspc_interf > tmp_noise/ math.sqrt(num_incoh))
1154 interfid = numpy.where(jspc_interf > tmp_noise/ math.sqrt(num_incoh))
1155 interfid = interfid[0]
1155 interfid = interfid[0]
1156 cinterfid = interfid.size
1156 cinterfid = interfid.size
1157
1157
1158 if (cnoiseid > 0): jspc_interf[noiseid] = 0
1158 if (cnoiseid > 0): jspc_interf[noiseid] = 0
1159
1159
1160 #Expandiendo los perfiles a limpiar
1160 #Expandiendo los perfiles a limpiar
1161 if (cinterfid > 0):
1161 if (cinterfid > 0):
1162 new_interfid = (numpy.r_[interfid - 1, interfid, interfid + 1] + num_prof)%num_prof
1162 new_interfid = (numpy.r_[interfid - 1, interfid, interfid + 1] + num_prof)%num_prof
1163 new_interfid = numpy.asarray(new_interfid)
1163 new_interfid = numpy.asarray(new_interfid)
1164 new_interfid = {x for x in new_interfid}
1164 new_interfid = {x for x in new_interfid}
1165 new_interfid = numpy.array(list(new_interfid))
1165 new_interfid = numpy.array(list(new_interfid))
1166 new_cinterfid = new_interfid.size
1166 new_cinterfid = new_interfid.size
1167 else: new_cinterfid = 0
1167 else: new_cinterfid = 0
1168
1168
1169 for ip in range(new_cinterfid):
1169 for ip in range(new_cinterfid):
1170 ind = junkspc_interf[:,new_interfid[ip]].ravel().argsort()
1170 ind = junkspc_interf[:,new_interfid[ip]].ravel().argsort()
1171 jspc_interf[new_interfid[ip]] = junkspc_interf[ind[nhei_interf/2],new_interfid[ip]]
1171 jspc_interf[new_interfid[ip]] = junkspc_interf[ind[nhei_interf/2],new_interfid[ip]]
1172
1172
1173
1173
1174 jspectra[ich,:,ind_hei] = jspectra[ich,:,ind_hei] - jspc_interf #Corregir indices
1174 jspectra[ich,:,ind_hei] = jspectra[ich,:,ind_hei] - jspc_interf #Corregir indices
1175
1175
1176 #Removiendo la interferencia del punto de mayor interferencia
1176 #Removiendo la interferencia del punto de mayor interferencia
1177 ListAux = jspc_interf[mask_prof].tolist()
1177 ListAux = jspc_interf[mask_prof].tolist()
1178 maxid = ListAux.index(max(ListAux))
1178 maxid = ListAux.index(max(ListAux))
1179
1179
1180
1180
1181 if cinterfid > 0:
1181 if cinterfid > 0:
1182 for ip in range(cinterfid*(interf == 2) - 1):
1182 for ip in range(cinterfid*(interf == 2) - 1):
1183 ind = (jspectra[ich,interfid[ip],:] < tmp_noise*(1 + 1/math.sqrt(num_incoh))).nonzero()
1183 ind = (jspectra[ich,interfid[ip],:] < tmp_noise*(1 + 1/math.sqrt(num_incoh))).nonzero()
1184 cind = len(ind)
1184 cind = len(ind)
1185
1185
1186 if (cind > 0):
1186 if (cind > 0):
1187 jspectra[ich,interfid[ip],ind] = tmp_noise*(1 + (numpy.random.uniform(cind) - 0.5)/math.sqrt(num_incoh))
1187 jspectra[ich,interfid[ip],ind] = tmp_noise*(1 + (numpy.random.uniform(cind) - 0.5)/math.sqrt(num_incoh))
1188
1188
1189 ind = numpy.array([-2,-1,1,2])
1189 ind = numpy.array([-2,-1,1,2])
1190 xx = numpy.zeros([4,4])
1190 xx = numpy.zeros([4,4])
1191
1191
1192 for id1 in range(4):
1192 for id1 in range(4):
1193 xx[:,id1] = ind[id1]**numpy.asarray(range(4))
1193 xx[:,id1] = ind[id1]**numpy.asarray(range(4))
1194
1194
1195 xx_inv = numpy.linalg.inv(xx)
1195 xx_inv = numpy.linalg.inv(xx)
1196 xx = xx_inv[:,0]
1196 xx = xx_inv[:,0]
1197 ind = (ind + maxid + num_mask_prof)%num_mask_prof
1197 ind = (ind + maxid + num_mask_prof)%num_mask_prof
1198 yy = jspectra[ich,mask_prof[ind],:]
1198 yy = jspectra[ich,mask_prof[ind],:]
1199 jspectra[ich,mask_prof[maxid],:] = numpy.dot(yy.transpose(),xx)
1199 jspectra[ich,mask_prof[maxid],:] = numpy.dot(yy.transpose(),xx)
1200
1200
1201
1201
1202 indAux = (jspectra[ich,:,:] < tmp_noise*(1-1/math.sqrt(num_incoh))).nonzero()
1202 indAux = (jspectra[ich,:,:] < tmp_noise*(1-1/math.sqrt(num_incoh))).nonzero()
1203 jspectra[ich,indAux[0],indAux[1]] = tmp_noise * (1 - 1/math.sqrt(num_incoh))
1203 jspectra[ich,indAux[0],indAux[1]] = tmp_noise * (1 - 1/math.sqrt(num_incoh))
1204
1204
1205 #Remocion de Interferencia en el Cross Spectra
1205 #Remocion de Interferencia en el Cross Spectra
1206 if jcspectra == None: return jspectra, jcspectra
1206 if jcspectra == None: return jspectra, jcspectra
1207 num_pairs = jcspectra.size/(num_prof*num_hei)
1207 num_pairs = jcspectra.size/(num_prof*num_hei)
1208 jcspectra = jcspectra.reshape(num_pairs, num_prof, num_hei)
1208 jcspectra = jcspectra.reshape(num_pairs, num_prof, num_hei)
1209
1209
1210 for ip in range(num_pairs):
1210 for ip in range(num_pairs):
1211
1211
1212 #-------------------------------------------
1212 #-------------------------------------------
1213
1213
1214 cspower = numpy.abs(jcspectra[ip,mask_prof,:])
1214 cspower = numpy.abs(jcspectra[ip,mask_prof,:])
1215 cspower = cspower[:,hei_interf]
1215 cspower = cspower[:,hei_interf]
1216 cspower = cspower.sum(axis = 0)
1216 cspower = cspower.sum(axis = 0)
1217
1217
1218 cspsort = cspower.ravel().argsort()
1218 cspsort = cspower.ravel().argsort()
1219 junkcspc_interf = jcspectra[ip,:,hei_interf[cspsort[range(offhei_interf, nhei_interf + offhei_interf)]]]
1219 junkcspc_interf = jcspectra[ip,:,hei_interf[cspsort[range(offhei_interf, nhei_interf + offhei_interf)]]]
1220 junkcspc_interf = junkcspc_interf.transpose()
1220 junkcspc_interf = junkcspc_interf.transpose()
1221 jcspc_interf = junkcspc_interf.sum(axis = 1)/nhei_interf
1221 jcspc_interf = junkcspc_interf.sum(axis = 1)/nhei_interf
1222
1222
1223 ind = numpy.abs(jcspc_interf[mask_prof]).ravel().argsort()
1223 ind = numpy.abs(jcspc_interf[mask_prof]).ravel().argsort()
1224
1224
1225 median_real = numpy.median(numpy.real(junkcspc_interf[mask_prof[ind[range(3*num_prof/4)]],:]))
1225 median_real = numpy.median(numpy.real(junkcspc_interf[mask_prof[ind[range(3*num_prof/4)]],:]))
1226 median_imag = numpy.median(numpy.imag(junkcspc_interf[mask_prof[ind[range(3*num_prof/4)]],:]))
1226 median_imag = numpy.median(numpy.imag(junkcspc_interf[mask_prof[ind[range(3*num_prof/4)]],:]))
1227 junkcspc_interf[comp_mask_prof,:] = numpy.complex(median_real, median_imag)
1227 junkcspc_interf[comp_mask_prof,:] = numpy.complex(median_real, median_imag)
1228
1228
1229 for iprof in range(num_prof):
1229 for iprof in range(num_prof):
1230 ind = numpy.abs(junkcspc_interf[iprof,:]).ravel().argsort()
1230 ind = numpy.abs(junkcspc_interf[iprof,:]).ravel().argsort()
1231 jcspc_interf[iprof] = junkcspc_interf[iprof, ind[nhei_interf/2]]
1231 jcspc_interf[iprof] = junkcspc_interf[iprof, ind[nhei_interf/2]]
1232
1232
1233 #Removiendo la Interferencia
1233 #Removiendo la Interferencia
1234 jcspectra[ip,:,ind_hei] = jcspectra[ip,:,ind_hei] - jcspc_interf
1234 jcspectra[ip,:,ind_hei] = jcspectra[ip,:,ind_hei] - jcspc_interf
1235
1235
1236 ListAux = numpy.abs(jcspc_interf[mask_prof]).tolist()
1236 ListAux = numpy.abs(jcspc_interf[mask_prof]).tolist()
1237 maxid = ListAux.index(max(ListAux))
1237 maxid = ListAux.index(max(ListAux))
1238
1238
1239 ind = numpy.array([-2,-1,1,2])
1239 ind = numpy.array([-2,-1,1,2])
1240 xx = numpy.zeros([4,4])
1240 xx = numpy.zeros([4,4])
1241
1241
1242 for id1 in range(4):
1242 for id1 in range(4):
1243 xx[:,id1] = ind[id1]**numpy.asarray(range(4))
1243 xx[:,id1] = ind[id1]**numpy.asarray(range(4))
1244
1244
1245 xx_inv = numpy.linalg.inv(xx)
1245 xx_inv = numpy.linalg.inv(xx)
1246 xx = xx_inv[:,0]
1246 xx = xx_inv[:,0]
1247
1247
1248 ind = (ind + maxid + num_mask_prof)%num_mask_prof
1248 ind = (ind + maxid + num_mask_prof)%num_mask_prof
1249 yy = jcspectra[ip,mask_prof[ind],:]
1249 yy = jcspectra[ip,mask_prof[ind],:]
1250 jcspectra[ip,mask_prof[maxid],:] = numpy.dot(yy.transpose(),xx)
1250 jcspectra[ip,mask_prof[maxid],:] = numpy.dot(yy.transpose(),xx)
1251
1251
1252 #Guardar Resultados
1252 #Guardar Resultados
1253 self.dataOut.data_spc = jspectra
1253 self.dataOut.data_spc = jspectra
1254 self.dataOut.data_cspc = jcspectra
1254 self.dataOut.data_cspc = jcspectra
1255
1255
1256 return 1
1256 return 1
1257
1257
1258 def setRadarFrequency(self, frequency=None):
1258 def setRadarFrequency(self, frequency=None):
1259 if frequency != None:
1259 if frequency != None:
1260 self.dataOut.frequency = frequency
1260 self.dataOut.frequency = frequency
1261
1261
1262 return 1
1262 return 1
1263
1263
1264 def getNoise(self, minHei=None, maxHei=None, minVel=None, maxVel=None):
1264 def getNoise(self, minHei=None, maxHei=None, minVel=None, maxVel=None):
1265 #validacion de rango
1265 #validacion de rango
1266 if minHei == None:
1266 if minHei == None:
1267 minHei = self.dataOut.heightList[0]
1267 minHei = self.dataOut.heightList[0]
1268
1268
1269 if maxHei == None:
1269 if maxHei == None:
1270 maxHei = self.dataOut.heightList[-1]
1270 maxHei = self.dataOut.heightList[-1]
1271
1271
1272 if (minHei < self.dataOut.heightList[0]) or (minHei > maxHei):
1272 if (minHei < self.dataOut.heightList[0]) or (minHei > maxHei):
1273 print 'minHei: %.2f is out of the heights range'%(minHei)
1273 print 'minHei: %.2f is out of the heights range'%(minHei)
1274 print 'minHei is setting to %.2f'%(self.dataOut.heightList[0])
1274 print 'minHei is setting to %.2f'%(self.dataOut.heightList[0])
1275 minHei = self.dataOut.heightList[0]
1275 minHei = self.dataOut.heightList[0]
1276
1276
1277 if (maxHei > self.dataOut.heightList[-1]) or (maxHei < minHei):
1277 if (maxHei > self.dataOut.heightList[-1]) or (maxHei < minHei):
1278 print 'maxHei: %.2f is out of the heights range'%(maxHei)
1278 print 'maxHei: %.2f is out of the heights range'%(maxHei)
1279 print 'maxHei is setting to %.2f'%(self.dataOut.heightList[-1])
1279 print 'maxHei is setting to %.2f'%(self.dataOut.heightList[-1])
1280 maxHei = self.dataOut.heightList[-1]
1280 maxHei = self.dataOut.heightList[-1]
1281
1281
1282 # validacion de velocidades
1282 # validacion de velocidades
1283 velrange = self.dataOut.getVelRange(1)
1283 velrange = self.dataOut.getVelRange(1)
1284
1284
1285 if minVel == None:
1285 if minVel == None:
1286 minVel = velrange[0]
1286 minVel = velrange[0]
1287
1287
1288 if maxVel == None:
1288 if maxVel == None:
1289 maxVel = velrange[-1]
1289 maxVel = velrange[-1]
1290
1290
1291 if (minVel < velrange[0]) or (minVel > maxVel):
1291 if (minVel < velrange[0]) or (minVel > maxVel):
1292 print 'minVel: %.2f is out of the velocity range'%(minVel)
1292 print 'minVel: %.2f is out of the velocity range'%(minVel)
1293 print 'minVel is setting to %.2f'%(velrange[0])
1293 print 'minVel is setting to %.2f'%(velrange[0])
1294 minVel = velrange[0]
1294 minVel = velrange[0]
1295
1295
1296 if (maxVel > velrange[-1]) or (maxVel < minVel):
1296 if (maxVel > velrange[-1]) or (maxVel < minVel):
1297 print 'maxVel: %.2f is out of the velocity range'%(maxVel)
1297 print 'maxVel: %.2f is out of the velocity range'%(maxVel)
1298 print 'maxVel is setting to %.2f'%(velrange[-1])
1298 print 'maxVel is setting to %.2f'%(velrange[-1])
1299 maxVel = velrange[-1]
1299 maxVel = velrange[-1]
1300
1300
1301 # seleccion de indices para rango
1301 # seleccion de indices para rango
1302 minIndex = 0
1302 minIndex = 0
1303 maxIndex = 0
1303 maxIndex = 0
1304 heights = self.dataOut.heightList
1304 heights = self.dataOut.heightList
1305
1305
1306 inda = numpy.where(heights >= minHei)
1306 inda = numpy.where(heights >= minHei)
1307 indb = numpy.where(heights <= maxHei)
1307 indb = numpy.where(heights <= maxHei)
1308
1308
1309 try:
1309 try:
1310 minIndex = inda[0][0]
1310 minIndex = inda[0][0]
1311 except:
1311 except:
1312 minIndex = 0
1312 minIndex = 0
1313
1313
1314 try:
1314 try:
1315 maxIndex = indb[0][-1]
1315 maxIndex = indb[0][-1]
1316 except:
1316 except:
1317 maxIndex = len(heights)
1317 maxIndex = len(heights)
1318
1318
1319 if (minIndex < 0) or (minIndex > maxIndex):
1319 if (minIndex < 0) or (minIndex > maxIndex):
1320 raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
1320 raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
1321
1321
1322 if (maxIndex >= self.dataOut.nHeights):
1322 if (maxIndex >= self.dataOut.nHeights):
1323 maxIndex = self.dataOut.nHeights-1
1323 maxIndex = self.dataOut.nHeights-1
1324
1324
1325 # seleccion de indices para velocidades
1325 # seleccion de indices para velocidades
1326 indminvel = numpy.where(velrange >= minVel)
1326 indminvel = numpy.where(velrange >= minVel)
1327 indmaxvel = numpy.where(velrange <= maxVel)
1327 indmaxvel = numpy.where(velrange <= maxVel)
1328 try:
1328 try:
1329 minIndexVel = indminvel[0][0]
1329 minIndexVel = indminvel[0][0]
1330 except:
1330 except:
1331 minIndexVel = 0
1331 minIndexVel = 0
1332
1332
1333 try:
1333 try:
1334 maxIndexVel = indmaxvel[0][-1]
1334 maxIndexVel = indmaxvel[0][-1]
1335 except:
1335 except:
1336 maxIndexVel = len(velrange)
1336 maxIndexVel = len(velrange)
1337
1337
1338 #seleccion del espectro
1338 #seleccion del espectro
1339 data_spc = self.dataOut.data_spc[:,minIndexVel:maxIndexVel+1,minIndex:maxIndex+1]
1339 data_spc = self.dataOut.data_spc[:,minIndexVel:maxIndexVel+1,minIndex:maxIndex+1]
1340 #estimacion de ruido
1340 #estimacion de ruido
1341 noise = numpy.zeros(self.dataOut.nChannels)
1341 noise = numpy.zeros(self.dataOut.nChannels)
1342
1342
1343 for channel in range(self.dataOut.nChannels):
1343 for channel in range(self.dataOut.nChannels):
1344 daux = data_spc[channel,:,:]
1344 daux = data_spc[channel,:,:]
1345 noise[channel] = hildebrand_sekhon(daux, self.dataOut.nIncohInt)
1345 noise[channel] = hildebrand_sekhon(daux, self.dataOut.nIncohInt)
1346
1346
1347 self.dataOut.noise = noise.copy()
1347 self.dataOut.noise = noise.copy()
1348
1348
1349 return 1
1349 return 1
1350
1350
1351
1351
1352 class IncohInt(Operation):
1352 class IncohInt(Operation):
1353
1353
1354
1354
1355 __profIndex = 0
1355 __profIndex = 0
1356 __withOverapping = False
1356 __withOverapping = False
1357
1357
1358 __byTime = False
1358 __byTime = False
1359 __initime = None
1359 __initime = None
1360 __lastdatatime = None
1360 __lastdatatime = None
1361 __integrationtime = None
1361 __integrationtime = None
1362
1362
1363 __buffer_spc = None
1363 __buffer_spc = None
1364 __buffer_cspc = None
1364 __buffer_cspc = None
1365 __buffer_dc = None
1365 __buffer_dc = None
1366
1366
1367 __dataReady = False
1367 __dataReady = False
1368
1368
1369 __timeInterval = None
1369 __timeInterval = None
1370
1370
1371 n = None
1371 n = None
1372
1372
1373
1373
1374
1374
1375 def __init__(self):
1375 def __init__(self):
1376
1376
1377 self.__isConfig = False
1377 self.__isConfig = False
1378
1378
1379 def setup(self, n=None, timeInterval=None, overlapping=False):
1379 def setup(self, n=None, timeInterval=None, overlapping=False):
1380 """
1380 """
1381 Set the parameters of the integration class.
1381 Set the parameters of the integration class.
1382
1382
1383 Inputs:
1383 Inputs:
1384
1384
1385 n : Number of coherent integrations
1385 n : Number of coherent integrations
1386 timeInterval : Time of integration. If the parameter "n" is selected this one does not work
1386 timeInterval : Time of integration. If the parameter "n" is selected this one does not work
1387 overlapping :
1387 overlapping :
1388
1388
1389 """
1389 """
1390
1390
1391 self.__initime = None
1391 self.__initime = None
1392 self.__lastdatatime = 0
1392 self.__lastdatatime = 0
1393 self.__buffer_spc = None
1393 self.__buffer_spc = None
1394 self.__buffer_cspc = None
1394 self.__buffer_cspc = None
1395 self.__buffer_dc = None
1395 self.__buffer_dc = None
1396 self.__dataReady = False
1396 self.__dataReady = False
1397
1397
1398
1398
1399 if n == None and timeInterval == None:
1399 if n == None and timeInterval == None:
1400 raise ValueError, "n or timeInterval should be specified ..."
1400 raise ValueError, "n or timeInterval should be specified ..."
1401
1401
1402 if n != None:
1402 if n != None:
1403 self.n = n
1403 self.n = n
1404 self.__byTime = False
1404 self.__byTime = False
1405 else:
1405 else:
1406 self.__integrationtime = timeInterval #if (type(timeInterval)!=integer) -> change this line
1406 self.__integrationtime = timeInterval #if (type(timeInterval)!=integer) -> change this line
1407 self.n = 9999
1407 self.n = 9999
1408 self.__byTime = True
1408 self.__byTime = True
1409
1409
1410 if overlapping:
1410 if overlapping:
1411 self.__withOverapping = True
1411 self.__withOverapping = True
1412 else:
1412 else:
1413 self.__withOverapping = False
1413 self.__withOverapping = False
1414 self.__buffer_spc = 0
1414 self.__buffer_spc = 0
1415 self.__buffer_cspc = 0
1415 self.__buffer_cspc = 0
1416 self.__buffer_dc = 0
1416 self.__buffer_dc = 0
1417
1417
1418 self.__profIndex = 0
1418 self.__profIndex = 0
1419
1419
1420 def putData(self, data_spc, data_cspc, data_dc):
1420 def putData(self, data_spc, data_cspc, data_dc):
1421
1421
1422 """
1422 """
1423 Add a profile to the __buffer_spc and increase in one the __profileIndex
1423 Add a profile to the __buffer_spc and increase in one the __profileIndex
1424
1424
1425 """
1425 """
1426
1426
1427 if not self.__withOverapping:
1427 if not self.__withOverapping:
1428 self.__buffer_spc += data_spc
1428 self.__buffer_spc += data_spc
1429
1429
1430 if data_cspc == None:
1430 if data_cspc == None:
1431 self.__buffer_cspc = None
1431 self.__buffer_cspc = None
1432 else:
1432 else:
1433 self.__buffer_cspc += data_cspc
1433 self.__buffer_cspc += data_cspc
1434
1434
1435 if data_dc == None:
1435 if data_dc == None:
1436 self.__buffer_dc = None
1436 self.__buffer_dc = None
1437 else:
1437 else:
1438 self.__buffer_dc += data_dc
1438 self.__buffer_dc += data_dc
1439
1439
1440 self.__profIndex += 1
1440 self.__profIndex += 1
1441 return
1441 return
1442
1442
1443 #Overlapping data
1443 #Overlapping data
1444 nChannels, nFFTPoints, nHeis = data_spc.shape
1444 nChannels, nFFTPoints, nHeis = data_spc.shape
1445 data_spc = numpy.reshape(data_spc, (1, nChannels, nFFTPoints, nHeis))
1445 data_spc = numpy.reshape(data_spc, (1, nChannels, nFFTPoints, nHeis))
1446 if data_cspc != None:
1446 if data_cspc != None:
1447 data_cspc = numpy.reshape(data_cspc, (1, -1, nFFTPoints, nHeis))
1447 data_cspc = numpy.reshape(data_cspc, (1, -1, nFFTPoints, nHeis))
1448 if data_dc != None:
1448 if data_dc != None:
1449 data_dc = numpy.reshape(data_dc, (1, -1, nHeis))
1449 data_dc = numpy.reshape(data_dc, (1, -1, nHeis))
1450
1450
1451 #If the buffer is empty then it takes the data value
1451 #If the buffer is empty then it takes the data value
1452 if self.__buffer_spc == None:
1452 if self.__buffer_spc == None:
1453 self.__buffer_spc = data_spc
1453 self.__buffer_spc = data_spc
1454
1454
1455 if data_cspc == None:
1455 if data_cspc == None:
1456 self.__buffer_cspc = None
1456 self.__buffer_cspc = None
1457 else:
1457 else:
1458 self.__buffer_cspc += data_cspc
1458 self.__buffer_cspc += data_cspc
1459
1459
1460 if data_dc == None:
1460 if data_dc == None:
1461 self.__buffer_dc = None
1461 self.__buffer_dc = None
1462 else:
1462 else:
1463 self.__buffer_dc += data_dc
1463 self.__buffer_dc += data_dc
1464
1464
1465 self.__profIndex += 1
1465 self.__profIndex += 1
1466 return
1466 return
1467
1467
1468 #If the buffer length is lower than n then stakcing the data value
1468 #If the buffer length is lower than n then stakcing the data value
1469 if self.__profIndex < self.n:
1469 if self.__profIndex < self.n:
1470 self.__buffer_spc = numpy.vstack((self.__buffer_spc, data_spc))
1470 self.__buffer_spc = numpy.vstack((self.__buffer_spc, data_spc))
1471
1471
1472 if data_cspc != None:
1472 if data_cspc != None:
1473 self.__buffer_cspc = numpy.vstack((self.__buffer_cspc, data_cspc))
1473 self.__buffer_cspc = numpy.vstack((self.__buffer_cspc, data_cspc))
1474
1474
1475 if data_dc != None:
1475 if data_dc != None:
1476 self.__buffer_dc = numpy.vstack((self.__buffer_dc, data_dc))
1476 self.__buffer_dc = numpy.vstack((self.__buffer_dc, data_dc))
1477
1477
1478 self.__profIndex += 1
1478 self.__profIndex += 1
1479 return
1479 return
1480
1480
1481 #If the buffer length is equal to n then replacing the last buffer value with the data value
1481 #If the buffer length is equal to n then replacing the last buffer value with the data value
1482 self.__buffer_spc = numpy.roll(self.__buffer_spc, -1, axis=0)
1482 self.__buffer_spc = numpy.roll(self.__buffer_spc, -1, axis=0)
1483 self.__buffer_spc[self.n-1] = data_spc
1483 self.__buffer_spc[self.n-1] = data_spc
1484
1484
1485 if data_cspc != None:
1485 if data_cspc != None:
1486 self.__buffer_cspc = numpy.roll(self.__buffer_cspc, -1, axis=0)
1486 self.__buffer_cspc = numpy.roll(self.__buffer_cspc, -1, axis=0)
1487 self.__buffer_cspc[self.n-1] = data_cspc
1487 self.__buffer_cspc[self.n-1] = data_cspc
1488
1488
1489 if data_dc != None:
1489 if data_dc != None:
1490 self.__buffer_dc = numpy.roll(self.__buffer_dc, -1, axis=0)
1490 self.__buffer_dc = numpy.roll(self.__buffer_dc, -1, axis=0)
1491 self.__buffer_dc[self.n-1] = data_dc
1491 self.__buffer_dc[self.n-1] = data_dc
1492
1492
1493 self.__profIndex = self.n
1493 self.__profIndex = self.n
1494 return
1494 return
1495
1495
1496
1496
1497 def pushData(self):
1497 def pushData(self):
1498 """
1498 """
1499 Return the sum of the last profiles and the profiles used in the sum.
1499 Return the sum of the last profiles and the profiles used in the sum.
1500
1500
1501 Affected:
1501 Affected:
1502
1502
1503 self.__profileIndex
1503 self.__profileIndex
1504
1504
1505 """
1505 """
1506 data_spc = None
1506 data_spc = None
1507 data_cspc = None
1507 data_cspc = None
1508 data_dc = None
1508 data_dc = None
1509
1509
1510 if not self.__withOverapping:
1510 if not self.__withOverapping:
1511 data_spc = self.__buffer_spc
1511 data_spc = self.__buffer_spc
1512 data_cspc = self.__buffer_cspc
1512 data_cspc = self.__buffer_cspc
1513 data_dc = self.__buffer_dc
1513 data_dc = self.__buffer_dc
1514
1514
1515 n = self.__profIndex
1515 n = self.__profIndex
1516
1516
1517 self.__buffer_spc = 0
1517 self.__buffer_spc = 0
1518 self.__buffer_cspc = 0
1518 self.__buffer_cspc = 0
1519 self.__buffer_dc = 0
1519 self.__buffer_dc = 0
1520 self.__profIndex = 0
1520 self.__profIndex = 0
1521
1521
1522 return data_spc, data_cspc, data_dc, n
1522 return data_spc, data_cspc, data_dc, n
1523
1523
1524 #Integration with Overlapping
1524 #Integration with Overlapping
1525 data_spc = numpy.sum(self.__buffer_spc, axis=0)
1525 data_spc = numpy.sum(self.__buffer_spc, axis=0)
1526
1526
1527 if self.__buffer_cspc != None:
1527 if self.__buffer_cspc != None:
1528 data_cspc = numpy.sum(self.__buffer_cspc, axis=0)
1528 data_cspc = numpy.sum(self.__buffer_cspc, axis=0)
1529
1529
1530 if self.__buffer_dc != None:
1530 if self.__buffer_dc != None:
1531 data_dc = numpy.sum(self.__buffer_dc, axis=0)
1531 data_dc = numpy.sum(self.__buffer_dc, axis=0)
1532
1532
1533 n = self.__profIndex
1533 n = self.__profIndex
1534
1534
1535 return data_spc, data_cspc, data_dc, n
1535 return data_spc, data_cspc, data_dc, n
1536
1536
1537 def byProfiles(self, *args):
1537 def byProfiles(self, *args):
1538
1538
1539 self.__dataReady = False
1539 self.__dataReady = False
1540 avgdata_spc = None
1540 avgdata_spc = None
1541 avgdata_cspc = None
1541 avgdata_cspc = None
1542 avgdata_dc = None
1542 avgdata_dc = None
1543 n = None
1543 n = None
1544
1544
1545 self.putData(*args)
1545 self.putData(*args)
1546
1546
1547 if self.__profIndex == self.n:
1547 if self.__profIndex == self.n:
1548
1548
1549 avgdata_spc, avgdata_cspc, avgdata_dc, n = self.pushData()
1549 avgdata_spc, avgdata_cspc, avgdata_dc, n = self.pushData()
1550 self.__dataReady = True
1550 self.__dataReady = True
1551
1551
1552 return avgdata_spc, avgdata_cspc, avgdata_dc
1552 return avgdata_spc, avgdata_cspc, avgdata_dc
1553
1553
1554 def byTime(self, datatime, *args):
1554 def byTime(self, datatime, *args):
1555
1555
1556 self.__dataReady = False
1556 self.__dataReady = False
1557 avgdata_spc = None
1557 avgdata_spc = None
1558 avgdata_cspc = None
1558 avgdata_cspc = None
1559 avgdata_dc = None
1559 avgdata_dc = None
1560 n = None
1560 n = None
1561
1561
1562 self.putData(*args)
1562 self.putData(*args)
1563
1563
1564 if (datatime - self.__initime) >= self.__integrationtime:
1564 if (datatime - self.__initime) >= self.__integrationtime:
1565 avgdata_spc, avgdata_cspc, avgdata_dc, n = self.pushData()
1565 avgdata_spc, avgdata_cspc, avgdata_dc, n = self.pushData()
1566 self.n = n
1566 self.n = n
1567 self.__dataReady = True
1567 self.__dataReady = True
1568
1568
1569 return avgdata_spc, avgdata_cspc, avgdata_dc
1569 return avgdata_spc, avgdata_cspc, avgdata_dc
1570
1570
1571 def integrate(self, datatime, *args):
1571 def integrate(self, datatime, *args):
1572
1572
1573 if self.__initime == None:
1573 if self.__initime == None:
1574 self.__initime = datatime
1574 self.__initime = datatime
1575
1575
1576 if self.__byTime:
1576 if self.__byTime:
1577 avgdata_spc, avgdata_cspc, avgdata_dc = self.byTime(datatime, *args)
1577 avgdata_spc, avgdata_cspc, avgdata_dc = self.byTime(datatime, *args)
1578 else:
1578 else:
1579 avgdata_spc, avgdata_cspc, avgdata_dc = self.byProfiles(*args)
1579 avgdata_spc, avgdata_cspc, avgdata_dc = self.byProfiles(*args)
1580
1580
1581 self.__lastdatatime = datatime
1581 self.__lastdatatime = datatime
1582
1582
1583 if avgdata_spc == None:
1583 if avgdata_spc == None:
1584 return None, None, None, None
1584 return None, None, None, None
1585
1585
1586 avgdatatime = self.__initime
1586 avgdatatime = self.__initime
1587 try:
1587 try:
1588 self.__timeInterval = (self.__lastdatatime - self.__initime)/(self.n - 1)
1588 self.__timeInterval = (self.__lastdatatime - self.__initime)/(self.n - 1)
1589 except:
1589 except:
1590 self.__timeInterval = self.__lastdatatime - self.__initime
1590 self.__timeInterval = self.__lastdatatime - self.__initime
1591
1591
1592 deltatime = datatime -self.__lastdatatime
1592 deltatime = datatime -self.__lastdatatime
1593
1593
1594 if not self.__withOverapping:
1594 if not self.__withOverapping:
1595 self.__initime = datatime
1595 self.__initime = datatime
1596 else:
1596 else:
1597 self.__initime += deltatime
1597 self.__initime += deltatime
1598
1598
1599 return avgdatatime, avgdata_spc, avgdata_cspc, avgdata_dc
1599 return avgdatatime, avgdata_spc, avgdata_cspc, avgdata_dc
1600
1600
1601 def run(self, dataOut, n=None, timeInterval=None, overlapping=False):
1601 def run(self, dataOut, n=None, timeInterval=None, overlapping=False):
1602
1602
1603 if n==1:
1603 if n==1:
1604 dataOut.flagNoData = False
1604 dataOut.flagNoData = False
1605 return
1605 return
1606
1606
1607 if not self.__isConfig:
1607 if not self.__isConfig:
1608 self.setup(n, timeInterval, overlapping)
1608 self.setup(n, timeInterval, overlapping)
1609 self.__isConfig = True
1609 self.__isConfig = True
1610
1610
1611 avgdatatime, avgdata_spc, avgdata_cspc, avgdata_dc = self.integrate(dataOut.utctime,
1611 avgdatatime, avgdata_spc, avgdata_cspc, avgdata_dc = self.integrate(dataOut.utctime,
1612 dataOut.data_spc,
1612 dataOut.data_spc,
1613 dataOut.data_cspc,
1613 dataOut.data_cspc,
1614 dataOut.data_dc)
1614 dataOut.data_dc)
1615
1615
1616 # dataOut.timeInterval *= n
1616 # dataOut.timeInterval *= n
1617 dataOut.flagNoData = True
1617 dataOut.flagNoData = True
1618
1618
1619 if self.__dataReady:
1619 if self.__dataReady:
1620
1620
1621 dataOut.data_spc = avgdata_spc
1621 dataOut.data_spc = avgdata_spc
1622 dataOut.data_cspc = avgdata_cspc
1622 dataOut.data_cspc = avgdata_cspc
1623 dataOut.data_dc = avgdata_dc
1623 dataOut.data_dc = avgdata_dc
1624
1624
1625 dataOut.nIncohInt *= self.n
1625 dataOut.nIncohInt *= self.n
1626 dataOut.utctime = avgdatatime
1626 dataOut.utctime = avgdatatime
1627 #dataOut.timeInterval = dataOut.ippSeconds * dataOut.nCohInt * dataOut.nIncohInt * dataOut.nFFTPoints
1627 #dataOut.timeInterval = dataOut.ippSeconds * dataOut.nCohInt * dataOut.nIncohInt * dataOut.nFFTPoints
1628 dataOut.timeInterval = self.__timeInterval*self.n
1628 dataOut.timeInterval = self.__timeInterval*self.n
1629 dataOut.flagNoData = False
1629 dataOut.flagNoData = False
1630
1630
1631 class ProfileConcat(Operation):
1631 class ProfileConcat(Operation):
1632
1632
1633 __isConfig = False
1633 __isConfig = False
1634 buffer = None
1634 buffer = None
1635
1635
1636 def __init__(self):
1636 def __init__(self):
1637
1637
1638 self.profileIndex = 0
1638 self.profileIndex = 0
1639
1639
1640 def reset(self):
1640 def reset(self):
1641 self.buffer = numpy.zeros_like(self.buffer)
1641 self.buffer = numpy.zeros_like(self.buffer)
1642 self.start_index = 0
1642 self.start_index = 0
1643 self.times = 1
1643 self.times = 1
1644
1644
1645 def setup(self, data, m, n=1):
1645 def setup(self, data, m, n=1):
1646 self.buffer = numpy.zeros((data.shape[0],data.shape[1]*m),dtype=type(data[0,0]))
1646 self.buffer = numpy.zeros((data.shape[0],data.shape[1]*m),dtype=type(data[0,0]))
1647 self.profiles = data.shape[1]
1647 self.profiles = data.shape[1]
1648 self.start_index = 0
1648 self.start_index = 0
1649 self.times = 1
1649 self.times = 1
1650
1650
1651 def concat(self, data):
1651 def concat(self, data):
1652
1652
1653 self.buffer[:,self.start_index:self.profiles*self.times] = data.copy()
1653 self.buffer[:,self.start_index:self.profiles*self.times] = data.copy()
1654 self.start_index = self.start_index + self.profiles
1654 self.start_index = self.start_index + self.profiles
1655
1655
1656 def run(self, dataOut, m):
1656 def run(self, dataOut, m):
1657
1657
1658 dataOut.flagNoData = True
1658 dataOut.flagNoData = True
1659
1659
1660 if not self.__isConfig:
1660 if not self.__isConfig:
1661 self.setup(dataOut.data, m, 1)
1661 self.setup(dataOut.data, m, 1)
1662 self.__isConfig = True
1662 self.__isConfig = True
1663
1663
1664 self.concat(dataOut.data)
1664 self.concat(dataOut.data)
1665 self.times += 1
1665 self.times += 1
1666 if self.times > m:
1666 if self.times > m:
1667 dataOut.data = self.buffer
1667 dataOut.data = self.buffer
1668 self.reset()
1668 self.reset()
1669 dataOut.flagNoData = False
1669 dataOut.flagNoData = False
1670 # se deben actualizar mas propiedades del header y del objeto dataOut, por ejemplo, las alturas
1670 # se deben actualizar mas propiedades del header y del objeto dataOut, por ejemplo, las alturas
1671 deltaHeight = dataOut.heightList[1] - dataOut.heightList[0]
1671 deltaHeight = dataOut.heightList[1] - dataOut.heightList[0]
1672 xf = dataOut.heightList[0] + dataOut.nHeights * deltaHeight * 5
1672 xf = dataOut.heightList[0] + dataOut.nHeights * deltaHeight * 5
1673 dataOut.heightList = numpy.arange(dataOut.heightList[0], xf, deltaHeight)
1673 dataOut.heightList = numpy.arange(dataOut.heightList[0], xf, deltaHeight)
1674
1674
1675
1675
1676
1676
1677 class ProfileSelector(Operation):
1677 class ProfileSelector(Operation):
1678
1678
1679 profileIndex = None
1679 profileIndex = None
1680 # Tamanho total de los perfiles
1680 # Tamanho total de los perfiles
1681 nProfiles = None
1681 nProfiles = None
1682
1682
1683 def __init__(self):
1683 def __init__(self):
1684
1684
1685 self.profileIndex = 0
1685 self.profileIndex = 0
1686
1686
1687 def incIndex(self):
1687 def incIndex(self):
1688 self.profileIndex += 1
1688 self.profileIndex += 1
1689
1689
1690 if self.profileIndex >= self.nProfiles:
1690 if self.profileIndex >= self.nProfiles:
1691 self.profileIndex = 0
1691 self.profileIndex = 0
1692
1692
1693 def isProfileInRange(self, minIndex, maxIndex):
1693 def isProfileInRange(self, minIndex, maxIndex):
1694
1694
1695 if self.profileIndex < minIndex:
1695 if self.profileIndex < minIndex:
1696 return False
1696 return False
1697
1697
1698 if self.profileIndex > maxIndex:
1698 if self.profileIndex > maxIndex:
1699 return False
1699 return False
1700
1700
1701 return True
1701 return True
1702
1702
1703 def isProfileInList(self, profileList):
1703 def isProfileInList(self, profileList):
1704
1704
1705 if self.profileIndex not in profileList:
1705 if self.profileIndex not in profileList:
1706 return False
1706 return False
1707
1707
1708 return True
1708 return True
1709
1709
1710 def run(self, dataOut, profileList=None, profileRangeList=None, beam=None):
1710 def run(self, dataOut, profileList=None, profileRangeList=None, beam=None):
1711
1711
1712 dataOut.flagNoData = True
1712 dataOut.flagNoData = True
1713 self.nProfiles = dataOut.nProfiles
1713 self.nProfiles = dataOut.nProfiles
1714
1714
1715 if profileList != None:
1715 if profileList != None:
1716 if self.isProfileInList(profileList):
1716 if self.isProfileInList(profileList):
1717 dataOut.flagNoData = False
1717 dataOut.flagNoData = False
1718
1718
1719 self.incIndex()
1719 self.incIndex()
1720 return 1
1720 return 1
1721
1721
1722
1722
1723 elif profileRangeList != None:
1723 elif profileRangeList != None:
1724 minIndex = profileRangeList[0]
1724 minIndex = profileRangeList[0]
1725 maxIndex = profileRangeList[1]
1725 maxIndex = profileRangeList[1]
1726 if self.isProfileInRange(minIndex, maxIndex):
1726 if self.isProfileInRange(minIndex, maxIndex):
1727 dataOut.flagNoData = False
1727 dataOut.flagNoData = False
1728
1728
1729 self.incIndex()
1729 self.incIndex()
1730 return 1
1730 return 1
1731 elif beam != None:
1731 elif beam != None:
1732 if self.isProfileInList(dataOut.beamRangeDict[beam]):
1732 if self.isProfileInList(dataOut.beamRangeDict[beam]):
1733 dataOut.flagNoData = False
1733 dataOut.flagNoData = False
1734
1734
1735 self.incIndex()
1735 self.incIndex()
1736 return 1
1736 return 1
1737
1737
1738 else:
1738 else:
1739 raise ValueError, "ProfileSelector needs profileList or profileRangeList"
1739 raise ValueError, "ProfileSelector needs profileList or profileRangeList"
1740
1740
1741 return 0
1741 return 0
1742
1742
1743 class SpectraHeisProc(ProcessingUnit):
1743 class SpectraHeisProc(ProcessingUnit):
1744 def __init__(self):
1744 def __init__(self):
1745 self.objectDict = {}
1745 self.objectDict = {}
1746 # self.buffer = None
1746 # self.buffer = None
1747 # self.firstdatatime = None
1747 # self.firstdatatime = None
1748 # self.profIndex = 0
1748 # self.profIndex = 0
1749 self.dataOut = SpectraHeis()
1749 self.dataOut = SpectraHeis()
1750
1750
1751 def __updateObjFromInput(self):
1751 def __updateObjFromInput(self):
1752 self.dataOut.timeZone = self.dataIn.timeZone
1752 self.dataOut.timeZone = self.dataIn.timeZone
1753 self.dataOut.dstFlag = self.dataIn.dstFlag
1753 self.dataOut.dstFlag = self.dataIn.dstFlag
1754 self.dataOut.errorCount = self.dataIn.errorCount
1754 self.dataOut.errorCount = self.dataIn.errorCount
1755 self.dataOut.useLocalTime = self.dataIn.useLocalTime
1755 self.dataOut.useLocalTime = self.dataIn.useLocalTime
1756
1756
1757 self.dataOut.radarControllerHeaderObj = self.dataIn.radarControllerHeaderObj.copy()#
1757 self.dataOut.radarControllerHeaderObj = self.dataIn.radarControllerHeaderObj.copy()#
1758 self.dataOut.systemHeaderObj = self.dataIn.systemHeaderObj.copy()#
1758 self.dataOut.systemHeaderObj = self.dataIn.systemHeaderObj.copy()#
1759 self.dataOut.channelList = self.dataIn.channelList
1759 self.dataOut.channelList = self.dataIn.channelList
1760 self.dataOut.heightList = self.dataIn.heightList
1760 self.dataOut.heightList = self.dataIn.heightList
1761 # self.dataOut.dtype = self.dataIn.dtype
1761 # self.dataOut.dtype = self.dataIn.dtype
1762 self.dataOut.dtype = numpy.dtype([('real','<f4'),('imag','<f4')])
1762 self.dataOut.dtype = numpy.dtype([('real','<f4'),('imag','<f4')])
1763 # self.dataOut.nHeights = self.dataIn.nHeights
1763 # self.dataOut.nHeights = self.dataIn.nHeights
1764 # self.dataOut.nChannels = self.dataIn.nChannels
1764 # self.dataOut.nChannels = self.dataIn.nChannels
1765 self.dataOut.nBaud = self.dataIn.nBaud
1765 self.dataOut.nBaud = self.dataIn.nBaud
1766 self.dataOut.nCode = self.dataIn.nCode
1766 self.dataOut.nCode = self.dataIn.nCode
1767 self.dataOut.code = self.dataIn.code
1767 self.dataOut.code = self.dataIn.code
1768 # self.dataOut.nProfiles = 1
1768 # self.dataOut.nProfiles = 1
1769 # self.dataOut.nProfiles = self.dataOut.nFFTPoints
1769 # self.dataOut.nProfiles = self.dataOut.nFFTPoints
1770 self.dataOut.nFFTPoints = self.dataIn.nHeights
1770 self.dataOut.nFFTPoints = self.dataIn.nHeights
1771 # self.dataOut.channelIndexList = self.dataIn.channelIndexList
1771 # self.dataOut.channelIndexList = self.dataIn.channelIndexList
1772 # self.dataOut.flagNoData = self.dataIn.flagNoData
1772 # self.dataOut.flagNoData = self.dataIn.flagNoData
1773 self.dataOut.flagTimeBlock = self.dataIn.flagTimeBlock
1773 self.dataOut.flagTimeBlock = self.dataIn.flagTimeBlock
1774 self.dataOut.utctime = self.dataIn.utctime
1774 self.dataOut.utctime = self.dataIn.utctime
1775 # self.dataOut.utctime = self.firstdatatime
1775 # self.dataOut.utctime = self.firstdatatime
1776 self.dataOut.flagDecodeData = self.dataIn.flagDecodeData #asumo q la data esta decodificada
1776 self.dataOut.flagDecodeData = self.dataIn.flagDecodeData #asumo q la data esta decodificada
1777 self.dataOut.flagDeflipData = self.dataIn.flagDeflipData #asumo q la data esta sin flip
1777 self.dataOut.flagDeflipData = self.dataIn.flagDeflipData #asumo q la data esta sin flip
1778 # self.dataOut.flagShiftFFT = self.dataIn.flagShiftFFT
1778 # self.dataOut.flagShiftFFT = self.dataIn.flagShiftFFT
1779 self.dataOut.nCohInt = self.dataIn.nCohInt
1779 self.dataOut.nCohInt = self.dataIn.nCohInt
1780 self.dataOut.nIncohInt = 1
1780 self.dataOut.nIncohInt = 1
1781 self.dataOut.ippSeconds= self.dataIn.ippSeconds
1781 self.dataOut.ippSeconds= self.dataIn.ippSeconds
1782 self.dataOut.windowOfFilter = self.dataIn.windowOfFilter
1782 self.dataOut.windowOfFilter = self.dataIn.windowOfFilter
1783
1783
1784 self.dataOut.timeInterval = self.dataIn.timeInterval*self.dataOut.nIncohInt
1784 self.dataOut.timeInterval = self.dataIn.timeInterval*self.dataOut.nIncohInt
1785 # self.dataOut.set=self.dataIn.set
1785 # self.dataOut.set=self.dataIn.set
1786 # self.dataOut.deltaHeight=self.dataIn.deltaHeight
1786 # self.dataOut.deltaHeight=self.dataIn.deltaHeight
1787
1787
1788
1788
1789 def __updateObjFromFits(self):
1789 def __updateObjFromFits(self):
1790 self.dataOut.utctime = self.dataIn.utctime
1790 self.dataOut.utctime = self.dataIn.utctime
1791 self.dataOut.channelIndexList = self.dataIn.channelIndexList
1791 self.dataOut.channelIndexList = self.dataIn.channelIndexList
1792
1792
1793 self.dataOut.channelList = self.dataIn.channelList
1793 self.dataOut.channelList = self.dataIn.channelList
1794 self.dataOut.heightList = self.dataIn.heightList
1794 self.dataOut.heightList = self.dataIn.heightList
1795 self.dataOut.data_spc = self.dataIn.data
1795 self.dataOut.data_spc = self.dataIn.data
1796 self.dataOut.timeInterval = self.dataIn.timeInterval
1796 self.dataOut.timeInterval = self.dataIn.timeInterval
1797 self.dataOut.timeZone = self.dataIn.timeZone
1797 self.dataOut.timeZone = self.dataIn.timeZone
1798 self.dataOut.useLocalTime = True
1798 self.dataOut.useLocalTime = True
1799 # self.dataOut.
1799 # self.dataOut.
1800 # self.dataOut.
1800 # self.dataOut.
1801
1801
1802 def __getFft(self):
1802 def __getFft(self):
1803
1803
1804 fft_volt = numpy.fft.fft(self.dataIn.data, axis=1)
1804 fft_volt = numpy.fft.fft(self.dataIn.data, axis=1)
1805 fft_volt = numpy.fft.fftshift(fft_volt,axes=(1,))
1805 fft_volt = numpy.fft.fftshift(fft_volt,axes=(1,))
1806 spc = numpy.abs(fft_volt * numpy.conjugate(fft_volt))/(self.dataOut.nFFTPoints)
1806 spc = numpy.abs(fft_volt * numpy.conjugate(fft_volt))/(self.dataOut.nFFTPoints)
1807 self.dataOut.data_spc = spc
1807 self.dataOut.data_spc = spc
1808
1808
1809 def init(self):
1809 def init(self):
1810
1810
1811 self.dataOut.flagNoData = True
1811 self.dataOut.flagNoData = True
1812
1812
1813 if self.dataIn.type == "Fits":
1813 if self.dataIn.type == "Fits":
1814 self.__updateObjFromFits()
1814 self.__updateObjFromFits()
1815 self.dataOut.flagNoData = False
1815 self.dataOut.flagNoData = False
1816 return
1816 return
1817
1817
1818 if self.dataIn.type == "SpectraHeis":
1818 if self.dataIn.type == "SpectraHeis":
1819 self.dataOut.copy(self.dataIn)
1819 self.dataOut.copy(self.dataIn)
1820 return
1820 return
1821
1821
1822 if self.dataIn.type == "Voltage":
1822 if self.dataIn.type == "Voltage":
1823 self.__updateObjFromInput()
1823 self.__updateObjFromInput()
1824 self.__getFft()
1824 self.__getFft()
1825 self.dataOut.flagNoData = False
1825 self.dataOut.flagNoData = False
1826
1826
1827 return
1827 return
1828
1828
1829 raise ValueError, "The type object %s is not valid"%(self.dataIn.type)
1829 raise ValueError, "The type object %s is not valid"%(self.dataIn.type)
1830
1830
1831
1831
1832 def selectChannels(self, channelList):
1832 def selectChannels(self, channelList):
1833
1833
1834 channelIndexList = []
1834 channelIndexList = []
1835
1835
1836 for channel in channelList:
1836 for channel in channelList:
1837 index = self.dataOut.channelList.index(channel)
1837 index = self.dataOut.channelList.index(channel)
1838 channelIndexList.append(index)
1838 channelIndexList.append(index)
1839
1839
1840 self.selectChannelsByIndex(channelIndexList)
1840 self.selectChannelsByIndex(channelIndexList)
1841
1841
1842 def selectChannelsByIndex(self, channelIndexList):
1842 def selectChannelsByIndex(self, channelIndexList):
1843 """
1843 """
1844 Selecciona un bloque de datos en base a canales segun el channelIndexList
1844 Selecciona un bloque de datos en base a canales segun el channelIndexList
1845
1845
1846 Input:
1846 Input:
1847 channelIndexList : lista sencilla de canales a seleccionar por ej. [2,3,7]
1847 channelIndexList : lista sencilla de canales a seleccionar por ej. [2,3,7]
1848
1848
1849 Affected:
1849 Affected:
1850 self.dataOut.data
1850 self.dataOut.data
1851 self.dataOut.channelIndexList
1851 self.dataOut.channelIndexList
1852 self.dataOut.nChannels
1852 self.dataOut.nChannels
1853 self.dataOut.m_ProcessingHeader.totalSpectra
1853 self.dataOut.m_ProcessingHeader.totalSpectra
1854 self.dataOut.systemHeaderObj.numChannels
1854 self.dataOut.systemHeaderObj.numChannels
1855 self.dataOut.m_ProcessingHeader.blockSize
1855 self.dataOut.m_ProcessingHeader.blockSize
1856
1856
1857 Return:
1857 Return:
1858 None
1858 None
1859 """
1859 """
1860
1860
1861 for channelIndex in channelIndexList:
1861 for channelIndex in channelIndexList:
1862 if channelIndex not in self.dataOut.channelIndexList:
1862 if channelIndex not in self.dataOut.channelIndexList:
1863 print channelIndexList
1863 print channelIndexList
1864 raise ValueError, "The value %d in channelIndexList is not valid" %channelIndex
1864 raise ValueError, "The value %d in channelIndexList is not valid" %channelIndex
1865
1865
1866 nChannels = len(channelIndexList)
1866 nChannels = len(channelIndexList)
1867
1867
1868 data_spc = self.dataOut.data_spc[channelIndexList,:]
1868 data_spc = self.dataOut.data_spc[channelIndexList,:]
1869
1869
1870 self.dataOut.data_spc = data_spc
1870 self.dataOut.data_spc = data_spc
1871 self.dataOut.channelList = [self.dataOut.channelList[i] for i in channelIndexList]
1871 self.dataOut.channelList = [self.dataOut.channelList[i] for i in channelIndexList]
1872
1872
1873 return 1
1873 return 1
1874
1874
1875 class IncohInt4SpectraHeis(Operation):
1875 class IncohInt4SpectraHeis(Operation):
1876
1876
1877 __isConfig = False
1877 __isConfig = False
1878
1878
1879 __profIndex = 0
1879 __profIndex = 0
1880 __withOverapping = False
1880 __withOverapping = False
1881
1881
1882 __byTime = False
1882 __byTime = False
1883 __initime = None
1883 __initime = None
1884 __lastdatatime = None
1884 __lastdatatime = None
1885 __integrationtime = None
1885 __integrationtime = None
1886
1886
1887 __buffer = None
1887 __buffer = None
1888
1888
1889 __dataReady = False
1889 __dataReady = False
1890
1890
1891 n = None
1891 n = None
1892
1892
1893
1893
1894 def __init__(self):
1894 def __init__(self):
1895
1895
1896 self.__isConfig = False
1896 self.__isConfig = False
1897
1897
1898 def setup(self, n=None, timeInterval=None, overlapping=False):
1898 def setup(self, n=None, timeInterval=None, overlapping=False):
1899 """
1899 """
1900 Set the parameters of the integration class.
1900 Set the parameters of the integration class.
1901
1901
1902 Inputs:
1902 Inputs:
1903
1903
1904 n : Number of coherent integrations
1904 n : Number of coherent integrations
1905 timeInterval : Time of integration. If the parameter "n" is selected this one does not work
1905 timeInterval : Time of integration. If the parameter "n" is selected this one does not work
1906 overlapping :
1906 overlapping :
1907
1907
1908 """
1908 """
1909
1909
1910 self.__initime = None
1910 self.__initime = None
1911 self.__lastdatatime = 0
1911 self.__lastdatatime = 0
1912 self.__buffer = None
1912 self.__buffer = None
1913 self.__dataReady = False
1913 self.__dataReady = False
1914
1914
1915
1915
1916 if n == None and timeInterval == None:
1916 if n == None and timeInterval == None:
1917 raise ValueError, "n or timeInterval should be specified ..."
1917 raise ValueError, "n or timeInterval should be specified ..."
1918
1918
1919 if n != None:
1919 if n != None:
1920 self.n = n
1920 self.n = n
1921 self.__byTime = False
1921 self.__byTime = False
1922 else:
1922 else:
1923 self.__integrationtime = timeInterval #* 60. #if (type(timeInterval)!=integer) -> change this line
1923 self.__integrationtime = timeInterval #* 60. #if (type(timeInterval)!=integer) -> change this line
1924 self.n = 9999
1924 self.n = 9999
1925 self.__byTime = True
1925 self.__byTime = True
1926
1926
1927 if overlapping:
1927 if overlapping:
1928 self.__withOverapping = True
1928 self.__withOverapping = True
1929 self.__buffer = None
1929 self.__buffer = None
1930 else:
1930 else:
1931 self.__withOverapping = False
1931 self.__withOverapping = False
1932 self.__buffer = 0
1932 self.__buffer = 0
1933
1933
1934 self.__profIndex = 0
1934 self.__profIndex = 0
1935
1935
1936 def putData(self, data):
1936 def putData(self, data):
1937
1937
1938 """
1938 """
1939 Add a profile to the __buffer and increase in one the __profileIndex
1939 Add a profile to the __buffer and increase in one the __profileIndex
1940
1940
1941 """
1941 """
1942
1942
1943 if not self.__withOverapping:
1943 if not self.__withOverapping:
1944 self.__buffer += data.copy()
1944 self.__buffer += data.copy()
1945 self.__profIndex += 1
1945 self.__profIndex += 1
1946 return
1946 return
1947
1947
1948 #Overlapping data
1948 #Overlapping data
1949 nChannels, nHeis = data.shape
1949 nChannels, nHeis = data.shape
1950 data = numpy.reshape(data, (1, nChannels, nHeis))
1950 data = numpy.reshape(data, (1, nChannels, nHeis))
1951
1951
1952 #If the buffer is empty then it takes the data value
1952 #If the buffer is empty then it takes the data value
1953 if self.__buffer == None:
1953 if self.__buffer == None:
1954 self.__buffer = data
1954 self.__buffer = data
1955 self.__profIndex += 1
1955 self.__profIndex += 1
1956 return
1956 return
1957
1957
1958 #If the buffer length is lower than n then stakcing the data value
1958 #If the buffer length is lower than n then stakcing the data value
1959 if self.__profIndex < self.n:
1959 if self.__profIndex < self.n:
1960 self.__buffer = numpy.vstack((self.__buffer, data))
1960 self.__buffer = numpy.vstack((self.__buffer, data))
1961 self.__profIndex += 1
1961 self.__profIndex += 1
1962 return
1962 return
1963
1963
1964 #If the buffer length is equal to n then replacing the last buffer value with the data value
1964 #If the buffer length is equal to n then replacing the last buffer value with the data value
1965 self.__buffer = numpy.roll(self.__buffer, -1, axis=0)
1965 self.__buffer = numpy.roll(self.__buffer, -1, axis=0)
1966 self.__buffer[self.n-1] = data
1966 self.__buffer[self.n-1] = data
1967 self.__profIndex = self.n
1967 self.__profIndex = self.n
1968 return
1968 return
1969
1969
1970
1970
1971 def pushData(self):
1971 def pushData(self):
1972 """
1972 """
1973 Return the sum of the last profiles and the profiles used in the sum.
1973 Return the sum of the last profiles and the profiles used in the sum.
1974
1974
1975 Affected:
1975 Affected:
1976
1976
1977 self.__profileIndex
1977 self.__profileIndex
1978
1978
1979 """
1979 """
1980
1980
1981 if not self.__withOverapping:
1981 if not self.__withOverapping:
1982 data = self.__buffer
1982 data = self.__buffer
1983 n = self.__profIndex
1983 n = self.__profIndex
1984
1984
1985 self.__buffer = 0
1985 self.__buffer = 0
1986 self.__profIndex = 0
1986 self.__profIndex = 0
1987
1987
1988 return data, n
1988 return data, n
1989
1989
1990 #Integration with Overlapping
1990 #Integration with Overlapping
1991 data = numpy.sum(self.__buffer, axis=0)
1991 data = numpy.sum(self.__buffer, axis=0)
1992 n = self.__profIndex
1992 n = self.__profIndex
1993
1993
1994 return data, n
1994 return data, n
1995
1995
1996 def byProfiles(self, data):
1996 def byProfiles(self, data):
1997
1997
1998 self.__dataReady = False
1998 self.__dataReady = False
1999 avgdata = None
1999 avgdata = None
2000 n = None
2000 n = None
2001
2001
2002 self.putData(data)
2002 self.putData(data)
2003
2003
2004 if self.__profIndex == self.n:
2004 if self.__profIndex == self.n:
2005
2005
2006 avgdata, n = self.pushData()
2006 avgdata, n = self.pushData()
2007 self.__dataReady = True
2007 self.__dataReady = True
2008
2008
2009 return avgdata
2009 return avgdata
2010
2010
2011 def byTime(self, data, datatime):
2011 def byTime(self, data, datatime):
2012
2012
2013 self.__dataReady = False
2013 self.__dataReady = False
2014 avgdata = None
2014 avgdata = None
2015 n = None
2015 n = None
2016
2016
2017 self.putData(data)
2017 self.putData(data)
2018
2018
2019 if (datatime - self.__initime) >= self.__integrationtime:
2019 if (datatime - self.__initime) >= self.__integrationtime:
2020 avgdata, n = self.pushData()
2020 avgdata, n = self.pushData()
2021 self.n = n
2021 self.n = n
2022 self.__dataReady = True
2022 self.__dataReady = True
2023
2023
2024 return avgdata
2024 return avgdata
2025
2025
2026 def integrate(self, data, datatime=None):
2026 def integrate(self, data, datatime=None):
2027
2027
2028 if self.__initime == None:
2028 if self.__initime == None:
2029 self.__initime = datatime
2029 self.__initime = datatime
2030
2030
2031 if self.__byTime:
2031 if self.__byTime:
2032 avgdata = self.byTime(data, datatime)
2032 avgdata = self.byTime(data, datatime)
2033 else:
2033 else:
2034 avgdata = self.byProfiles(data)
2034 avgdata = self.byProfiles(data)
2035
2035
2036
2036
2037 self.__lastdatatime = datatime
2037 self.__lastdatatime = datatime
2038
2038
2039 if avgdata == None:
2039 if avgdata == None:
2040 return None, None
2040 return None, None
2041
2041
2042 avgdatatime = self.__initime
2042 avgdatatime = self.__initime
2043
2043
2044 deltatime = datatime -self.__lastdatatime
2044 deltatime = datatime -self.__lastdatatime
2045
2045
2046 if not self.__withOverapping:
2046 if not self.__withOverapping:
2047 self.__initime = datatime
2047 self.__initime = datatime
2048 else:
2048 else:
2049 self.__initime += deltatime
2049 self.__initime += deltatime
2050
2050
2051 return avgdata, avgdatatime
2051 return avgdata, avgdatatime
2052
2052
2053 def run(self, dataOut, **kwargs):
2053 def run(self, dataOut, **kwargs):
2054
2054
2055 if not self.__isConfig:
2055 if not self.__isConfig:
2056 self.setup(**kwargs)
2056 self.setup(**kwargs)
2057 self.__isConfig = True
2057 self.__isConfig = True
2058
2058
2059 avgdata, avgdatatime = self.integrate(dataOut.data_spc, dataOut.utctime)
2059 avgdata, avgdatatime = self.integrate(dataOut.data_spc, dataOut.utctime)
2060
2060
2061 # dataOut.timeInterval *= n
2061 # dataOut.timeInterval *= n
2062 dataOut.flagNoData = True
2062 dataOut.flagNoData = True
2063
2063
2064 if self.__dataReady:
2064 if self.__dataReady:
2065 dataOut.data_spc = avgdata
2065 dataOut.data_spc = avgdata
2066 dataOut.nIncohInt *= self.n
2066 dataOut.nIncohInt *= self.n
2067 # dataOut.nCohInt *= self.n
2067 # dataOut.nCohInt *= self.n
2068 dataOut.utctime = avgdatatime
2068 dataOut.utctime = avgdatatime
2069 dataOut.timeInterval = dataOut.ippSeconds * dataOut.nIncohInt
2069 dataOut.timeInterval = dataOut.ippSeconds * dataOut.nIncohInt
2070 # dataOut.timeInterval = self.__timeInterval*self.n
2070 # dataOut.timeInterval = self.__timeInterval*self.n
2071 dataOut.flagNoData = False
2071 dataOut.flagNoData = False
2072
2072
2073
2073
2074
2074
2075
2075
2076 class AMISRProc(ProcessingUnit):
2076 class AMISRProc(ProcessingUnit):
2077 def __init__(self):
2077 def __init__(self):
2078 self.objectDict = {}
2078 self.objectDict = {}
2079 self.dataOut = AMISR()
2079 self.dataOut = AMISR()
2080
2080
2081 def init(self):
2081 def init(self):
2082 if self.dataIn.type == 'AMISR':
2082 if self.dataIn.type == 'AMISR':
2083 self.dataOut.copy(self.dataIn)
2083 self.dataOut.copy(self.dataIn)
2084
2085
2086 class PrintInfo(Operation):
2087 def __init__(self):
2088 pass
2089
2090 def run(self, dataOut):
2091
2092 print 'Number of Records by File: %d'%dataOut.nRecords
2093 print 'Number of Pulses: %d'%dataOut.nProfiles
2094 print 'Number of Samples by Pulse: %d'%len(dataOut.heightList)
2095 print 'Ipp Seconds: %f'%dataOut.ippSeconds
2096 print 'Number of Beams: %d'%dataOut.nBeams
2097 print 'BeamCodes:'
2098 beamStrList = ['Beam %d -> Code %d'%(k,v) for k,v in dataOut.beamCodeDict.items()]
2099 for b in beamStrList:
2100 print b
2101
2084
2102
2085 class BeamSelector(Operation):
2103 class BeamSelector(Operation):
2086 profileIndex = None
2104 profileIndex = None
2087 # Tamanho total de los perfiles
2105 # Tamanho total de los perfiles
2088 nProfiles = None
2106 nProfiles = None
2089
2107
2090 def __init__(self):
2108 def __init__(self):
2091
2109
2092 self.profileIndex = 0
2110 self.profileIndex = 0
2093
2111
2094 def incIndex(self):
2112 def incIndex(self):
2095 self.profileIndex += 1
2113 self.profileIndex += 1
2096
2114
2097 if self.profileIndex >= self.nProfiles:
2115 if self.profileIndex >= self.nProfiles:
2098 self.profileIndex = 0
2116 self.profileIndex = 0
2099
2117
2100 def isProfileInRange(self, minIndex, maxIndex):
2118 def isProfileInRange(self, minIndex, maxIndex):
2101
2119
2102 if self.profileIndex < minIndex:
2120 if self.profileIndex < minIndex:
2103 return False
2121 return False
2104
2122
2105 if self.profileIndex > maxIndex:
2123 if self.profileIndex > maxIndex:
2106 return False
2124 return False
2107
2125
2108 return True
2126 return True
2109
2127
2110 def isProfileInList(self, profileList):
2128 def isProfileInList(self, profileList):
2111
2129
2112 if self.profileIndex not in profileList:
2130 if self.profileIndex not in profileList:
2113 return False
2131 return False
2114
2132
2115 return True
2133 return True
2116
2134
2117 def run(self, dataOut, beam=None):
2135 def run(self, dataOut, beam=None):
2118
2136
2119 dataOut.flagNoData = True
2137 dataOut.flagNoData = True
2120 self.nProfiles = dataOut.nProfiles
2138 self.nProfiles = dataOut.nProfiles
2121
2139
2122 if beam != None:
2140 if beam != None:
2123 if self.isProfileInList(dataOut.beamRangeDict[beam]):
2141 if self.isProfileInList(dataOut.beamRangeDict[beam]):
2124 dataOut.flagNoData = False
2142 dataOut.flagNoData = False
2125
2143
2126 self.incIndex()
2144 self.incIndex()
2127 return 1
2145 return 1
2128
2146
2129 else:
2147 else:
2130 raise ValueError, "BeamSelector needs beam value"
2148 raise ValueError, "BeamSelector needs beam value"
2131
2149
2132 return 0 No newline at end of file
2150 return 0
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