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1 | ||||
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2 | import os | |||
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3 | import datetime | |||
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4 | import numpy | |||
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5 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator #YONG | |||
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6 | ||||
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7 | from .jroplot_spectra import RTIPlot, NoisePlot | |||
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8 | ||||
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9 | from schainpy.utils import log | |||
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10 | from .plotting_codes import * | |||
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11 | ||||
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12 | from schainpy.model.graphics.jroplot_base import Plot, plt | |||
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13 | ||||
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14 | import matplotlib.pyplot as plt | |||
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15 | import matplotlib.colors as colors | |||
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16 | ||||
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17 | import time | |||
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18 | import math | |||
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19 | ||||
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20 | ||||
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21 | from matplotlib.ticker import MultipleLocator | |||
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22 | ||||
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23 | ||||
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24 | ||||
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25 | class RTIDPPlot(RTIPlot): | |||
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26 | ||||
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27 | ''' | |||
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28 | Plot for RTI Double Pulse Experiment | |||
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29 | ''' | |||
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30 | ||||
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31 | CODE = 'RTIDP' | |||
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32 | colormap = 'jro' | |||
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33 | plot_name = 'RTI' | |||
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34 | ||||
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35 | #cb_label = 'Ne Electron Density (1/cm3)' | |||
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36 | ||||
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37 | def setup(self): | |||
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38 | self.xaxis = 'time' | |||
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39 | self.ncols = 1 | |||
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40 | self.nrows = 3 | |||
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41 | self.nplots = self.nrows | |||
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42 | #self.height=10 | |||
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43 | if self.showSNR: | |||
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44 | self.nrows += 1 | |||
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45 | self.nplots += 1 | |||
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46 | ||||
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47 | self.ylabel = 'Height [km]' | |||
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48 | self.xlabel = 'Time (LT)' | |||
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49 | ||||
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50 | self.cb_label = 'Intensity (dB)' | |||
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51 | ||||
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52 | ||||
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53 | #self.cb_label = cb_label | |||
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54 | ||||
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55 | self.titles = ['{} Channel {}'.format( | |||
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56 | self.plot_name.upper(), '0x1'),'{} Channel {}'.format( | |||
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57 | self.plot_name.upper(), '0'),'{} Channel {}'.format( | |||
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58 | self.plot_name.upper(), '1')] | |||
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59 | ||||
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60 | ||||
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61 | def plot(self): | |||
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62 | ||||
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63 | self.data.normalize_heights() | |||
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64 | self.x = self.data.times | |||
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65 | self.y = self.data.heights[0:self.data.NDP] | |||
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66 | ||||
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67 | if self.showSNR: | |||
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68 | self.z = numpy.concatenate( | |||
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69 | (self.data[self.CODE], self.data['snr']) | |||
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70 | ) | |||
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71 | else: | |||
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72 | ||||
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73 | self.z = self.data[self.CODE] | |||
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74 | #print(numpy.max(self.z[0,0:])) | |||
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75 | ||||
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76 | self.z = numpy.ma.masked_invalid(self.z) | |||
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77 | ||||
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78 | if self.decimation is None: | |||
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79 | x, y, z = self.fill_gaps(self.x, self.y, self.z) | |||
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80 | else: | |||
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81 | x, y, z = self.fill_gaps(*self.decimate()) | |||
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82 | ||||
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83 | for n, ax in enumerate(self.axes): | |||
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84 | ||||
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85 | ||||
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86 | self.zmax = self.zmax if self.zmax is not None else numpy.max( | |||
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87 | self.z[1][0,12:40]) | |||
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88 | self.zmin = self.zmin if self.zmin is not None else numpy.min( | |||
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89 | self.z[1][0,12:40]) | |||
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90 | ||||
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91 | ||||
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92 | ||||
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93 | if ax.firsttime: | |||
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94 | ||||
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95 | if self.zlimits is not None: | |||
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96 | self.zmin, self.zmax = self.zlimits[n] | |||
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97 | ||||
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98 | ||||
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99 | ax.plt = ax.pcolormesh(x, y, z[n].T * self.factors[n], | |||
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100 | vmin=self.zmin, | |||
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101 | vmax=self.zmax, | |||
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102 | cmap=self.cmaps[n] | |||
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103 | ) | |||
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104 | #plt.tight_layout() | |||
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105 | else: | |||
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106 | if self.zlimits is not None: | |||
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107 | self.zmin, self.zmax = self.zlimits[n] | |||
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108 | ax.collections.remove(ax.collections[0]) | |||
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109 | ax.plt = ax.pcolormesh(x, y, z[n].T * self.factors[n], | |||
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110 | vmin=self.zmin, | |||
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111 | vmax=self.zmax, | |||
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112 | cmap=self.cmaps[n] | |||
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113 | ) | |||
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114 | #plt.tight_layout() | |||
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115 | ||||
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116 | ||||
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117 | class RTILPPlot(RTIPlot): | |||
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118 | ||||
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119 | ''' | |||
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120 | Plot for RTI Long Pulse | |||
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121 | ''' | |||
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122 | ||||
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123 | CODE = 'RTILP' | |||
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124 | colormap = 'jro' | |||
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125 | plot_name = 'RTI LP' | |||
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126 | ||||
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127 | #cb_label = 'Ne Electron Density (1/cm3)' | |||
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128 | ||||
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129 | def setup(self): | |||
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130 | self.xaxis = 'time' | |||
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131 | self.ncols = 1 | |||
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132 | self.nrows = 4 | |||
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133 | self.nplots = self.nrows | |||
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134 | if self.showSNR: | |||
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135 | self.nrows += 1 | |||
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136 | self.nplots += 1 | |||
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137 | ||||
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138 | self.ylabel = 'Height [km]' | |||
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139 | self.xlabel = 'Time (LT)' | |||
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140 | ||||
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141 | self.cb_label = 'Intensity (dB)' | |||
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142 | ||||
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143 | ||||
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144 | ||||
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145 | #self.cb_label = cb_label | |||
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146 | ||||
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147 | self.titles = ['{} Channel {}'.format( | |||
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148 | self.plot_name.upper(), '0'),'{} Channel {}'.format( | |||
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149 | self.plot_name.upper(), '1'),'{} Channel {}'.format( | |||
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150 | self.plot_name.upper(), '2'),'{} Channel {}'.format( | |||
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151 | self.plot_name.upper(), '3')] | |||
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152 | ||||
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153 | ||||
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154 | def plot(self): | |||
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155 | ||||
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156 | self.data.normalize_heights() | |||
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157 | self.x = self.data.times | |||
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158 | self.y = self.data.heights[0:self.data.NRANGE] | |||
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159 | ||||
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160 | if self.showSNR: | |||
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161 | self.z = numpy.concatenate( | |||
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162 | (self.data[self.CODE], self.data['snr']) | |||
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163 | ) | |||
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164 | else: | |||
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165 | ||||
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166 | self.z = self.data[self.CODE] | |||
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167 | #print(numpy.max(self.z[0,0:])) | |||
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168 | ||||
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169 | self.z = numpy.ma.masked_invalid(self.z) | |||
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170 | ||||
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171 | if self.decimation is None: | |||
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172 | x, y, z = self.fill_gaps(self.x, self.y, self.z) | |||
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173 | else: | |||
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174 | x, y, z = self.fill_gaps(*self.decimate()) | |||
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175 | ||||
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176 | for n, ax in enumerate(self.axes): | |||
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177 | ||||
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178 | ||||
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179 | self.zmax = self.zmax if self.zmax is not None else numpy.max( | |||
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180 | self.z[1][0,12:40]) | |||
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181 | self.zmin = self.zmin if self.zmin is not None else numpy.min( | |||
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182 | self.z[1][0,12:40]) | |||
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183 | ||||
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184 | if ax.firsttime: | |||
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185 | ||||
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186 | if self.zlimits is not None: | |||
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187 | self.zmin, self.zmax = self.zlimits[n] | |||
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188 | ||||
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189 | ||||
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190 | ax.plt = ax.pcolormesh(x, y, z[n].T * self.factors[n], | |||
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191 | vmin=self.zmin, | |||
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192 | vmax=self.zmax, | |||
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193 | cmap=self.cmaps[n] | |||
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194 | ) | |||
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195 | #plt.tight_layout() | |||
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196 | else: | |||
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197 | if self.zlimits is not None: | |||
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198 | self.zmin, self.zmax = self.zlimits[n] | |||
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199 | ax.collections.remove(ax.collections[0]) | |||
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200 | ax.plt = ax.pcolormesh(x, y, z[n].T * self.factors[n], | |||
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201 | vmin=self.zmin, | |||
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202 | vmax=self.zmax, | |||
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203 | cmap=self.cmaps[n] | |||
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204 | ) | |||
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205 | #plt.tight_layout() | |||
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206 | ||||
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207 | ||||
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208 | class DenRTIPlot(RTIPlot): | |||
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209 | ||||
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210 | ''' | |||
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211 | Plot for Den | |||
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212 | ''' | |||
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213 | ||||
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214 | CODE = 'denrti' | |||
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215 | colormap = 'jro' | |||
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216 | plot_name = 'Electron Density' | |||
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217 | ||||
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218 | #cb_label = 'Ne Electron Density (1/cm3)' | |||
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219 | ||||
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220 | def setup(self): | |||
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221 | self.xaxis = 'time' | |||
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222 | self.ncols = 1 | |||
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223 | self.nrows = self.data.shape(self.CODE)[0] | |||
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224 | self.nplots = self.nrows | |||
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225 | if self.showSNR: | |||
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226 | self.nrows += 1 | |||
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227 | self.nplots += 1 | |||
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228 | ||||
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229 | self.ylabel = 'Height [km]' | |||
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230 | self.xlabel = 'Time (LT)' | |||
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231 | ||||
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232 | self.plots_adjust.update({'wspace': 0.8, 'hspace':0.2, 'left': 0.2, 'right': 0.9, 'bottom': 0.18}) | |||
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233 | ||||
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234 | if self.CODE == 'denrti' or self.CODE=='denrtiLP': | |||
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235 | self.cb_label = r'$\mathrm{N_e}$ Electron Density ($\mathrm{1/cm^3}$)' | |||
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236 | ||||
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237 | #self.cb_label = cb_label | |||
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238 | if not self.titles: | |||
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239 | self.titles = self.data.parameters \ | |||
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240 | if self.data.parameters else ['{}'.format(self.plot_name)] | |||
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241 | if self.showSNR: | |||
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242 | self.titles.append('SNR') | |||
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243 | ||||
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244 | def plot(self): | |||
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245 | ||||
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246 | self.data.normalize_heights() | |||
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247 | self.x = self.data.times | |||
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248 | self.y = self.data.heights | |||
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249 | ||||
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250 | ||||
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251 | ||||
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252 | if self.showSNR: | |||
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253 | self.z = numpy.concatenate( | |||
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254 | (self.data[self.CODE], self.data['snr']) | |||
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255 | ) | |||
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256 | else: | |||
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257 | self.z = self.data[self.CODE] | |||
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258 | ||||
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259 | self.z = numpy.ma.masked_invalid(self.z) | |||
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260 | ||||
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261 | if self.decimation is None: | |||
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262 | x, y, z = self.fill_gaps(self.x, self.y, self.z) | |||
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263 | else: | |||
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264 | x, y, z = self.fill_gaps(*self.decimate()) | |||
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265 | ||||
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266 | for n, ax in enumerate(self.axes): | |||
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267 | ||||
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268 | self.zmax = self.zmax if self.zmax is not None else numpy.max( | |||
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269 | self.z[n]) | |||
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270 | self.zmin = self.zmin if self.zmin is not None else numpy.min( | |||
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271 | self.z[n]) | |||
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272 | ||||
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273 | if ax.firsttime: | |||
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274 | ||||
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275 | if self.zlimits is not None: | |||
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276 | self.zmin, self.zmax = self.zlimits[n] | |||
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277 | if numpy.log10(self.zmin)<0: | |||
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278 | self.zmin=1 | |||
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279 | ax.plt = ax.pcolormesh(x, y, z[n].T * self.factors[n], | |||
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280 | vmin=self.zmin, | |||
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281 | vmax=self.zmax, | |||
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282 | cmap=self.cmaps[n], | |||
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283 | norm=colors.LogNorm() | |||
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284 | ) | |||
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285 | #plt.tight_layout() | |||
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286 | ||||
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287 | else: | |||
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288 | if self.zlimits is not None: | |||
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289 | self.zmin, self.zmax = self.zlimits[n] | |||
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290 | ax.collections.remove(ax.collections[0]) | |||
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291 | ax.plt = ax.pcolormesh(x, y, z[n].T * self.factors[n], | |||
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292 | vmin=self.zmin, | |||
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293 | vmax=self.zmax, | |||
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294 | cmap=self.cmaps[n], | |||
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295 | norm=colors.LogNorm() | |||
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296 | ) | |||
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297 | #plt.tight_layout() | |||
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298 | ||||
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299 | ||||
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300 | ||||
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301 | class DenRTILPPlot(DenRTIPlot): | |||
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302 | ||||
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303 | ''' | |||
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304 | Plot for Electron Temperature | |||
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305 | ''' | |||
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306 | ||||
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307 | CODE = 'denrtiLP' | |||
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308 | colormap = 'jro' | |||
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309 | plot_name = 'Electron Density' | |||
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310 | ||||
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311 | ||||
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312 | class ETempRTIPlot(RTIPlot): | |||
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313 | ||||
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314 | ''' | |||
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315 | Plot for Electron Temperature | |||
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316 | ''' | |||
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317 | ||||
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318 | CODE = 'ETemp' | |||
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319 | colormap = 'jet' | |||
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320 | plot_name = 'Electron Temperature' | |||
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321 | ||||
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322 | #cb_label = 'Ne Electron Density (1/cm3)' | |||
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323 | ||||
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324 | def setup(self): | |||
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325 | self.xaxis = 'time' | |||
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326 | self.ncols = 1 | |||
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327 | self.nrows = self.data.shape(self.CODE)[0] | |||
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328 | self.nplots = self.nrows | |||
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329 | if self.showSNR: | |||
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330 | self.nrows += 1 | |||
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331 | self.nplots += 1 | |||
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332 | ||||
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333 | self.ylabel = 'Height [km]' | |||
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334 | self.xlabel = 'Time (LT)' | |||
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335 | self.plots_adjust.update({'wspace': 0.8, 'hspace':0.2, 'left': 0.2, 'right': 0.9, 'bottom': 0.18}) | |||
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336 | if self.CODE == 'ETemp' or self.CODE == 'ETempLP': | |||
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337 | self.cb_label = 'Electron Temperature (K)' | |||
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338 | if self.CODE == 'ITemp' or self.CODE == 'ITempLP': | |||
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339 | self.cb_label = 'Ion Temperature (K)' | |||
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340 | ||||
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341 | ||||
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342 | if not self.titles: | |||
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343 | self.titles = self.data.parameters \ | |||
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344 | if self.data.parameters else ['{}'.format(self.plot_name)] | |||
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345 | if self.showSNR: | |||
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346 | self.titles.append('SNR') | |||
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347 | ||||
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348 | def plot(self): | |||
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349 | ||||
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350 | self.data.normalize_heights() | |||
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351 | self.x = self.data.times | |||
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352 | self.y = self.data.heights | |||
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353 | ||||
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354 | if self.showSNR: | |||
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355 | self.z = numpy.concatenate( | |||
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356 | (self.data[self.CODE], self.data['snr']) | |||
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357 | ) | |||
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358 | else: | |||
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359 | self.z = self.data[self.CODE] | |||
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360 | ||||
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361 | self.z = numpy.ma.masked_invalid(self.z) | |||
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362 | ||||
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363 | if self.decimation is None: | |||
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364 | x, y, z = self.fill_gaps(self.x, self.y, self.z) | |||
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365 | else: | |||
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366 | x, y, z = self.fill_gaps(*self.decimate()) | |||
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367 | ||||
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368 | for n, ax in enumerate(self.axes): | |||
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369 | ||||
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370 | self.zmax = self.zmax if self.zmax is not None else numpy.max( | |||
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371 | self.z[n]) | |||
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372 | self.zmin = self.zmin if self.zmin is not None else numpy.min( | |||
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373 | self.z[n]) | |||
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374 | ||||
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375 | if ax.firsttime: | |||
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376 | ||||
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377 | if self.zlimits is not None: | |||
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378 | self.zmin, self.zmax = self.zlimits[n] | |||
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379 | ||||
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380 | ax.plt = ax.pcolormesh(x, y, z[n].T * self.factors[n], | |||
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381 | vmin=self.zmin, | |||
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382 | vmax=self.zmax, | |||
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383 | cmap=self.cmaps[n] | |||
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384 | ) | |||
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385 | #plt.tight_layout() | |||
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386 | ||||
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387 | else: | |||
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388 | if self.zlimits is not None: | |||
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389 | self.zmin, self.zmax = self.zlimits[n] | |||
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390 | ax.collections.remove(ax.collections[0]) | |||
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391 | ax.plt = ax.pcolormesh(x, y, z[n].T * self.factors[n], | |||
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392 | vmin=self.zmin, | |||
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393 | vmax=self.zmax, | |||
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394 | cmap=self.cmaps[n] | |||
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395 | ) | |||
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396 | #plt.tight_layout() | |||
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397 | ||||
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398 | ||||
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399 | ||||
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400 | class ITempRTIPlot(ETempRTIPlot): | |||
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401 | ||||
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402 | ''' | |||
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403 | Plot for Ion Temperature | |||
|
|
404 | ''' | |||
|
|
405 | ||||
|
|
406 | CODE = 'ITemp' | |||
|
|
407 | colormap = 'jet' | |||
|
|
408 | plot_name = 'Ion Temperature' | |||
|
|
409 | ||||
|
|
410 | ||||
|
|
411 | class ElectronTempLPPlot(ETempRTIPlot): | |||
|
|
412 | ||||
|
|
413 | ''' | |||
|
|
414 | Plot for Electron Temperature LP | |||
|
|
415 | ''' | |||
|
|
416 | ||||
|
|
417 | CODE = 'ETempLP' | |||
|
|
418 | colormap = 'jet' | |||
|
|
419 | plot_name = 'Electron Temperature' | |||
|
|
420 | ||||
|
|
421 | ||||
|
|
422 | class IonTempLPPlot(ETempRTIPlot): | |||
|
|
423 | ||||
|
|
424 | ''' | |||
|
|
425 | Plot for Ion Temperature LP | |||
|
|
426 | ''' | |||
|
|
427 | ||||
|
|
428 | CODE = 'ITempLP' | |||
|
|
429 | colormap = 'jet' | |||
|
|
430 | plot_name = 'Ion Temperature' | |||
|
|
431 | ||||
|
|
432 | ||||
|
|
433 | class HFracRTIPlot(ETempRTIPlot): | |||
|
|
434 | ||||
|
|
435 | ''' | |||
|
|
436 | Plot for H+ LP | |||
|
|
437 | ''' | |||
|
|
438 | ||||
|
|
439 | CODE = 'HFracLP' | |||
|
|
440 | colormap = 'jet' | |||
|
|
441 | plot_name = 'H+ Frac' | |||
|
|
442 | ||||
|
|
443 | ||||
|
|
444 | class HeFracRTIPlot(ETempRTIPlot): | |||
|
|
445 | ||||
|
|
446 | ''' | |||
|
|
447 | Plot for He+ LP | |||
|
|
448 | ''' | |||
|
|
449 | ||||
|
|
450 | CODE = 'HeFracLP' | |||
|
|
451 | colormap = 'jet' | |||
|
|
452 | plot_name = 'He+ Frac' | |||
|
|
453 | ||||
|
|
454 | ||||
|
|
455 | class TempsDPPlot(Plot): | |||
|
|
456 | ''' | |||
|
|
457 | Plot for Electron - Ion Temperatures | |||
|
|
458 | ''' | |||
|
|
459 | ||||
|
|
460 | CODE = 'tempsDP' | |||
|
|
461 | plot_name = 'Temperatures' | |||
|
|
462 | plot_type = 'scatterbuffer' | |||
|
|
463 | ||||
|
|
464 | ||||
|
|
465 | def setup(self): | |||
|
|
466 | ||||
|
|
467 | self.ncols = 1 | |||
|
|
468 | self.nrows = 1 | |||
|
|
469 | self.nplots = 1 | |||
|
|
470 | self.ylabel = 'Range [km]' | |||
|
|
471 | self.xlabel = 'Temperature (K)' | |||
|
|
472 | self.width = 3.5 | |||
|
|
473 | self.height = 5.5 | |||
|
|
474 | self.colorbar = False | |||
|
|
475 | self.plots_adjust.update({'wspace': 0.8, 'hspace':0.2, 'left': 0.2, 'right': 0.9, 'bottom': 0.18}) | |||
|
|
476 | if not self.titles: | |||
|
|
477 | self.titles = self.data.parameters \ | |||
|
|
478 | if self.data.parameters else ['{}'.format(self.CODE.upper())] | |||
|
|
479 | ||||
|
|
480 | def plot(self): | |||
|
|
481 | ||||
|
|
482 | self.x = self.data['tempsDP'][:,-1] | |||
|
|
483 | self.y = self.data.heights[0:self.data.NSHTS] | |||
|
|
484 | ||||
|
|
485 | self.xmin = -100 | |||
|
|
486 | self.xmax = 5000 | |||
|
|
487 | ax = self.axes[0] | |||
|
|
488 | ||||
|
|
489 | if ax.firsttime: | |||
|
|
490 | ||||
|
|
491 | ax.errorbar(self.x, self.y, xerr=self.data.ete2, fmt='r^',elinewidth=1.0,color='b',linewidth=2.0, label='Te') | |||
|
|
492 | ax.errorbar(self.data.ti2, self.y, fmt='k^', xerr=self.data.eti2,elinewidth=1.0,color='b',linewidth=2.0, label='Ti') | |||
|
|
493 | plt.legend(loc='lower right') | |||
|
|
494 | self.ystep_given = 50 | |||
|
|
495 | ax.yaxis.set_minor_locator(MultipleLocator(15)) | |||
|
|
496 | ax.grid(which='minor') | |||
|
|
497 | #plt.tight_layout() | |||
|
|
498 | ||||
|
|
499 | ||||
|
|
500 | else: | |||
|
|
501 | self.clear_figures() | |||
|
|
502 | ax.errorbar(self.x, self.y, xerr=self.data.ete2, fmt='r^',elinewidth=1.0,color='b',linewidth=2.0, label='Te') | |||
|
|
503 | ax.errorbar(self.data.ti2, self.y, fmt='k^', xerr=self.data.eti2,elinewidth=1.0,color='b',linewidth=2.0, label='Ti') | |||
|
|
504 | plt.legend(loc='lower right') | |||
|
|
505 | ax.yaxis.set_minor_locator(MultipleLocator(15)) | |||
|
|
506 | #plt.tight_layout() | |||
|
|
507 | ||||
|
|
508 | ||||
|
|
509 | class TempsHPPlot(Plot): | |||
|
|
510 | ''' | |||
|
|
511 | Plot for Temperatures Hybrid Experiment | |||
|
|
512 | ''' | |||
|
|
513 | ||||
|
|
514 | CODE = 'temps_LP' | |||
|
|
515 | plot_name = 'Temperatures' | |||
|
|
516 | plot_type = 'scatterbuffer' | |||
|
|
517 | ||||
|
|
518 | ||||
|
|
519 | def setup(self): | |||
|
|
520 | ||||
|
|
521 | self.ncols = 1 | |||
|
|
522 | self.nrows = 1 | |||
|
|
523 | self.nplots = 1 | |||
|
|
524 | self.ylabel = 'Range [km]' | |||
|
|
525 | self.xlabel = 'Temperature (K)' | |||
|
|
526 | self.width = 3.5 | |||
|
|
527 | self.height = 6.5 | |||
|
|
528 | self.colorbar = False | |||
|
|
529 | if not self.titles: | |||
|
|
530 | self.titles = self.data.parameters \ | |||
|
|
531 | if self.data.parameters else ['{}'.format(self.CODE.upper())] | |||
|
|
532 | ||||
|
|
533 | def plot(self): | |||
|
|
534 | ||||
|
|
535 | self.x = self.data['temps_LP'][:,-1] | |||
|
|
536 | self.y = self.data.heights[0:self.data.NACF] | |||
|
|
537 | self.xmin = -100 | |||
|
|
538 | self.xmax = 4500 | |||
|
|
539 | ax = self.axes[0] | |||
|
|
540 | ||||
|
|
541 | if ax.firsttime: | |||
|
|
542 | ||||
|
|
543 | ax.errorbar(self.x, self.y, xerr=self.data.ete, fmt='r^',elinewidth=1.0,color='b',linewidth=2.0, label='Te') | |||
|
|
544 | ax.errorbar(self.data.ti, self.y, fmt='k^', xerr=self.data.eti,elinewidth=1.0,color='b',linewidth=2.0, label='Ti') | |||
|
|
545 | plt.legend(loc='lower right') | |||
|
|
546 | self.ystep_given = 200 | |||
|
|
547 | ax.yaxis.set_minor_locator(MultipleLocator(15)) | |||
|
|
548 | ax.grid(which='minor') | |||
|
|
549 | #plt.tight_layout() | |||
|
|
550 | ||||
|
|
551 | ||||
|
|
552 | else: | |||
|
|
553 | self.clear_figures() | |||
|
|
554 | ax.errorbar(self.x, self.y, xerr=self.data.ete, fmt='r^',elinewidth=1.0,color='b',linewidth=2.0, label='Te') | |||
|
|
555 | ax.errorbar(self.data.ti, self.y, fmt='k^', xerr=self.data.eti,elinewidth=1.0,color='b',linewidth=2.0, label='Ti') | |||
|
|
556 | plt.legend(loc='lower right') | |||
|
|
557 | ax.yaxis.set_minor_locator(MultipleLocator(15)) | |||
|
|
558 | #plt.tight_layout() | |||
|
|
559 | ||||
|
|
560 | ||||
|
|
561 | class FracsHPPlot(Plot): | |||
|
|
562 | ''' | |||
|
|
563 | Plot for Composition LP | |||
|
|
564 | ''' | |||
|
|
565 | ||||
|
|
566 | CODE = 'fracs_LP' | |||
|
|
567 | plot_name = 'Composition' | |||
|
|
568 | plot_type = 'scatterbuffer' | |||
|
|
569 | ||||
|
|
570 | ||||
|
|
571 | def setup(self): | |||
|
|
572 | ||||
|
|
573 | self.ncols = 1 | |||
|
|
574 | self.nrows = 1 | |||
|
|
575 | self.nplots = 1 | |||
|
|
576 | self.ylabel = 'Range [km]' | |||
|
|
577 | self.xlabel = 'Frac' | |||
|
|
578 | self.width = 3.5 | |||
|
|
579 | self.height = 6.5 | |||
|
|
580 | self.colorbar = False | |||
|
|
581 | if not self.titles: | |||
|
|
582 | self.titles = self.data.parameters \ | |||
|
|
583 | if self.data.parameters else ['{}'.format(self.CODE.upper())] | |||
|
|
584 | ||||
|
|
585 | def plot(self): | |||
|
|
586 | ||||
|
|
587 | self.x = self.data['fracs_LP'][:,-1] | |||
|
|
588 | self.y = self.data.heights[0:self.data.NACF] | |||
|
|
589 | ||||
|
|
590 | self.xmin = 0 | |||
|
|
591 | self.xmax = 1 | |||
|
|
592 | ax = self.axes[0] | |||
|
|
593 | ||||
|
|
594 | if ax.firsttime: | |||
|
|
595 | ||||
|
|
596 | ax.errorbar(self.x, self.y[self.data.cut:], xerr=self.data.eph, fmt='r^',elinewidth=1.0,color='b',linewidth=2.0, label='H+') | |||
|
|
597 | ax.errorbar(self.data.phe, self.y[self.data.cut:], fmt='k^', xerr=self.data.ephe,elinewidth=1.0,color='b',linewidth=2.0, label='He+') | |||
|
|
598 | plt.legend(loc='lower right') | |||
|
|
599 | self.xstep_given = 0.2 | |||
|
|
600 | self.ystep_given = 200 | |||
|
|
601 | ax.yaxis.set_minor_locator(MultipleLocator(15)) | |||
|
|
602 | ax.grid(which='minor') | |||
|
|
603 | #plt.tight_layout() | |||
|
|
604 | ||||
|
|
605 | ||||
|
|
606 | else: | |||
|
|
607 | self.clear_figures() | |||
|
|
608 | ax.errorbar(self.x, self.y[self.data.cut:], xerr=self.data.eph, fmt='r^',elinewidth=1.0,color='b',linewidth=2.0, label='H+') | |||
|
|
609 | ax.errorbar(self.data.phe, self.y[self.data.cut:], fmt='k^', xerr=self.data.ephe,elinewidth=1.0,color='b',linewidth=2.0, label='He+') | |||
|
|
610 | plt.legend(loc='lower right') | |||
|
|
611 | ax.yaxis.set_minor_locator(MultipleLocator(15)) | |||
|
|
612 | #plt.tight_layout() | |||
|
|
613 | ||||
|
|
614 | ||||
|
|
615 | ||||
|
|
616 | class EDensityPlot(Plot): | |||
|
|
617 | ''' | |||
|
|
618 | Plot for electron density | |||
|
|
619 | ''' | |||
|
|
620 | ||||
|
|
621 | CODE = 'den' | |||
|
|
622 | plot_name = 'Electron Density' | |||
|
|
623 | plot_type = 'scatterbuffer' | |||
|
|
624 | ||||
|
|
625 | ||||
|
|
626 | def setup(self): | |||
|
|
627 | ||||
|
|
628 | self.ncols = 1 | |||
|
|
629 | self.nrows = 1 | |||
|
|
630 | self.nplots = 1 | |||
|
|
631 | self.ylabel = 'Range [km]' | |||
|
|
632 | self.xlabel = r'$\mathrm{N_e}$ Electron Density ($\mathrm{1/cm^3}$)' | |||
|
|
633 | self.width = 4 | |||
|
|
634 | self.height = 6.5 | |||
|
|
635 | self.colorbar = False | |||
|
|
636 | self.plots_adjust.update({'wspace': 0.8, 'hspace':0.2, 'left': 0.2, 'right': 0.9, 'bottom': 0.18}) | |||
|
|
637 | if not self.titles: | |||
|
|
638 | self.titles = self.data.parameters \ | |||
|
|
639 | if self.data.parameters else ['{}'.format(self.CODE.upper())] | |||
|
|
640 | ||||
|
|
641 | def plot(self): | |||
|
|
642 | ||||
|
|
643 | ||||
|
|
644 | self.x = self.data[self.CODE] | |||
|
|
645 | self.y = self.data.heights | |||
|
|
646 | self.xmin = 1000 | |||
|
|
647 | self.xmax = 10000000 | |||
|
|
648 | ax = self.axes[0] | |||
|
|
649 | ||||
|
|
650 | if ax.firsttime: | |||
|
|
651 | self.autoxticks=False | |||
|
|
652 | #if self.CODE=='den': | |||
|
|
653 | ax.errorbar(self.data.dphi, self.y[:self.data.NSHTS], xerr=1, fmt='h-',elinewidth=1.0,color='g',linewidth=1.0, label='Faraday Profile',markersize=2) | |||
|
|
654 | #ax.errorbar(self.data.dphi, self.y[:self.data.NSHTS], xerr=self.data.sdn1, fmt='h-',elinewidth=1.0,color='g',linewidth=1.0, label='Faraday Profile',markersize=2) | |||
|
|
655 | ||||
|
|
656 | ax.errorbar(self.x[:,-1], self.y[:self.data.NSHTS], fmt='k^-', xerr=self.data.sdp2,elinewidth=1.0,color='b',linewidth=1.0, label='Power Profile',markersize=2) | |||
|
|
657 | #else: | |||
|
|
658 | #ax.errorbar(self.data.dphi[:self.data.cut], self.y[:self.data.cut], xerr=1, fmt='h-',elinewidth=1.0,color='g',linewidth=1.0, label='Faraday Profile',markersize=2) | |||
|
|
659 | #ax.errorbar(self.x[:self.data.cut,-1], self.y[:self.data.cut], fmt='k^-', xerr=self.data.sdp2[:self.data.cut],elinewidth=1.0,color='b',linewidth=1.0, label='Power Profile',markersize=2) | |||
|
|
660 | ||||
|
|
661 | if self.CODE=='denLP': | |||
|
|
662 | ax.errorbar(self.data.ne[self.data.cut:], self.y[self.data.cut:], xerr=self.data.ene[self.data.cut:], fmt='r^-',elinewidth=1.0,color='r',linewidth=1.0, label='LP Profile',markersize=2) | |||
|
|
663 | ||||
|
|
664 | plt.legend(loc='upper right') | |||
|
|
665 | ax.set_xscale("log", nonposx='clip') | |||
|
|
666 | grid_y_ticks=numpy.arange(numpy.nanmin(self.y),numpy.nanmax(self.y),50) | |||
|
|
667 | self.ystep_given=100 | |||
|
|
668 | if self.CODE=='denLP': | |||
|
|
669 | self.ystep_given=200 | |||
|
|
670 | ax.set_yticks(grid_y_ticks,minor=True) | |||
|
|
671 | ax.grid(which='minor') | |||
|
|
672 | #plt.tight_layout() | |||
|
|
673 | ||||
|
|
674 | ||||
|
|
675 | ||||
|
|
676 | else: | |||
|
|
677 | ||||
|
|
678 | self.clear_figures() | |||
|
|
679 | #if self.CODE=='den': | |||
|
|
680 | ax.errorbar(self.data.dphi, self.y[:self.data.NSHTS], xerr=1, fmt='h-',elinewidth=1.0,color='g',linewidth=1.0, label='Faraday Profile',markersize=2) | |||
|
|
681 | #ax.errorbar(self.data.dphi, self.y[:self.data.NSHTS], xerr=self.data.sdn1, fmt='h-',elinewidth=1.0,color='g',linewidth=1.0, label='Faraday Profile',markersize=2) | |||
|
|
682 | ||||
|
|
683 | ax.errorbar(self.x[:,-1], self.y[:self.data.NSHTS], fmt='k^-', xerr=self.data.sdp2,elinewidth=1.0,color='b',linewidth=1.0, label='Power Profile',markersize=2) | |||
|
|
684 | ax.errorbar(self.x[:,-2], self.y[:self.data.NSHTS], elinewidth=1.0,color='r',linewidth=0.5,linestyle="dashed") | |||
|
|
685 | #else: | |||
|
|
686 | #ax.errorbar(self.data.dphi[:self.data.cut], self.y[:self.data.cut], xerr=1, fmt='h-',elinewidth=1.0,color='g',linewidth=1.0, label='Faraday Profile',markersize=2) | |||
|
|
687 | #ax.errorbar(self.x[:self.data.cut,-1], self.y[:self.data.cut], fmt='k^-', xerr=self.data.sdp2[:self.data.cut],elinewidth=1.0,color='b',linewidth=1.0, label='Power Profile',markersize=2) | |||
|
|
688 | #ax.errorbar(self.x[:self.data.cut,-2], self.y[:self.data.cut], elinewidth=1.0,color='r',linewidth=0.5,linestyle="dashed") | |||
|
|
689 | ||||
|
|
690 | if self.CODE=='denLP': | |||
|
|
691 | ax.errorbar(self.data.ne[self.data.cut:], self.y[self.data.cut:], fmt='r^-', xerr=self.data.ene[self.data.cut:],elinewidth=1.0,color='r',linewidth=1.0, label='LP Profile',markersize=2) | |||
|
|
692 | ||||
|
|
693 | ax.set_xscale("log", nonposx='clip') | |||
|
|
694 | grid_y_ticks=numpy.arange(numpy.nanmin(self.y),numpy.nanmax(self.y),50) | |||
|
|
695 | ax.set_yticks(grid_y_ticks,minor=True) | |||
|
|
696 | ax.grid(which='minor') | |||
|
|
697 | plt.legend(loc='upper right') | |||
|
|
698 | #plt.tight_layout() | |||
|
|
699 | ||||
|
|
700 | class FaradayAnglePlot(Plot): | |||
|
|
701 | ''' | |||
|
|
702 | Plot for electron density | |||
|
|
703 | ''' | |||
|
|
704 | ||||
|
|
705 | CODE = 'FaradayAngle' | |||
|
|
706 | plot_name = 'Faraday Angle' | |||
|
|
707 | plot_type = 'scatterbuffer' | |||
|
|
708 | ||||
|
|
709 | ||||
|
|
710 | def setup(self): | |||
|
|
711 | ||||
|
|
712 | self.ncols = 1 | |||
|
|
713 | self.nrows = 1 | |||
|
|
714 | self.nplots = 1 | |||
|
|
715 | self.ylabel = 'Range [km]' | |||
|
|
716 | self.xlabel = 'Faraday Angle (º)' | |||
|
|
717 | self.width = 4 | |||
|
|
718 | self.height = 6.5 | |||
|
|
719 | self.colorbar = False | |||
|
|
720 | if not self.titles: | |||
|
|
721 | self.titles = self.data.parameters \ | |||
|
|
722 | if self.data.parameters else ['{}'.format(self.CODE.upper())] | |||
|
|
723 | ||||
|
|
724 | def plot(self): | |||
|
|
725 | ||||
|
|
726 | ||||
|
|
727 | self.x = self.data[self.CODE] | |||
|
|
728 | self.y = self.data.heights | |||
|
|
729 | self.xmin = -180 | |||
|
|
730 | self.xmax = 180 | |||
|
|
731 | ax = self.axes[0] | |||
|
|
732 | ||||
|
|
733 | if ax.firsttime: | |||
|
|
734 | self.autoxticks=False | |||
|
|
735 | #if self.CODE=='den': | |||
|
|
736 | ax.plot(self.x, self.y,marker='o',color='g',linewidth=1.0,markersize=2) | |||
|
|
737 | ||||
|
|
738 | grid_y_ticks=numpy.arange(numpy.nanmin(self.y),numpy.nanmax(self.y),50) | |||
|
|
739 | self.ystep_given=100 | |||
|
|
740 | if self.CODE=='denLP': | |||
|
|
741 | self.ystep_given=200 | |||
|
|
742 | ax.set_yticks(grid_y_ticks,minor=True) | |||
|
|
743 | ax.grid(which='minor') | |||
|
|
744 | #plt.tight_layout() | |||
|
|
745 | else: | |||
|
|
746 | ||||
|
|
747 | self.clear_figures() | |||
|
|
748 | #if self.CODE=='den': | |||
|
|
749 | #print(numpy.shape(self.x)) | |||
|
|
750 | ax.plot(self.x[:,-1], self.y, marker='o',color='g',linewidth=1.0, markersize=2) | |||
|
|
751 | ||||
|
|
752 | grid_y_ticks=numpy.arange(numpy.nanmin(self.y),numpy.nanmax(self.y),50) | |||
|
|
753 | ax.set_yticks(grid_y_ticks,minor=True) | |||
|
|
754 | ax.grid(which='minor') | |||
|
|
755 | ||||
|
|
756 | class EDensityHPPlot(EDensityPlot): | |||
|
|
757 | ||||
|
|
758 | ''' | |||
|
|
759 | Plot for Electron Density Hybrid Experiment | |||
|
|
760 | ''' | |||
|
|
761 | ||||
|
|
762 | CODE = 'denLP' | |||
|
|
763 | plot_name = 'Electron Density' | |||
|
|
764 | plot_type = 'scatterbuffer' | |||
|
|
765 | ||||
|
|
766 | ||||
|
|
767 | class ACFsPlot(Plot): | |||
|
|
768 | ''' | |||
|
|
769 | Plot for ACFs Double Pulse Experiment | |||
|
|
770 | ''' | |||
|
|
771 | ||||
|
|
772 | CODE = 'acfs' | |||
|
|
773 | plot_name = 'ACF' | |||
|
|
774 | plot_type = 'scatterbuffer' | |||
|
|
775 | ||||
|
|
776 | ||||
|
|
777 | def setup(self): | |||
|
|
778 | #self.xaxis = 'time' | |||
|
|
779 | self.ncols = 1 | |||
|
|
780 | self.nrows = 1 | |||
|
|
781 | self.nplots = 1 | |||
|
|
782 | self.ylabel = 'Range [km]' | |||
|
|
783 | self.xlabel = 'lags (ms)' | |||
|
|
784 | self.width = 3.5 | |||
|
|
785 | self.height = 6 | |||
|
|
786 | self.colorbar = False | |||
|
|
787 | self.plots_adjust.update({'wspace': 0.8, 'hspace':0.2, 'left': 0.2, 'right': 0.9, 'bottom': 0.18}) | |||
|
|
788 | if not self.titles: | |||
|
|
789 | self.titles = self.data.parameters \ | |||
|
|
790 | if self.data.parameters else ['{}'.format(self.CODE.upper())] | |||
|
|
791 | ||||
|
|
792 | def plot(self): | |||
|
|
793 | ||||
|
|
794 | self.x = self.data.lags_to_plot | |||
|
|
795 | self.y = self.data['acfs'][:,-1] | |||
|
|
796 | ||||
|
|
797 | ||||
|
|
798 | self.xmin = 0.0 | |||
|
|
799 | self.xmax = 2.0 | |||
|
|
800 | ||||
|
|
801 | ax = self.axes[0] | |||
|
|
802 | ||||
|
|
803 | if ax.firsttime: | |||
|
|
804 | ||||
|
|
805 | for i in range(self.data.NSHTS): | |||
|
|
806 | x_aux = numpy.isfinite(self.x[i,:]) | |||
|
|
807 | y_aux = numpy.isfinite(self.y[i,:]) | |||
|
|
808 | yerr_aux = numpy.isfinite(self.data.acfs_error_to_plot[i,:]) | |||
|
|
809 | x_igcej_aux = numpy.isfinite(self.data.x_igcej_to_plot[i,:]) | |||
|
|
810 | y_igcej_aux = numpy.isfinite(self.data.y_igcej_to_plot[i,:]) | |||
|
|
811 | x_ibad_aux = numpy.isfinite(self.data.x_ibad_to_plot[i,:]) | |||
|
|
812 | y_ibad_aux = numpy.isfinite(self.data.y_ibad_to_plot[i,:]) | |||
|
|
813 | if self.x[i,:][~numpy.isnan(self.x[i,:])].shape[0]>2: | |||
|
|
814 | ax.errorbar(self.x[i,x_aux], self.y[i,y_aux], yerr=self.data.acfs_error_to_plot[i,x_aux],color='b',marker='o',linewidth=1.0,markersize=2) | |||
|
|
815 | ax.plot(self.data.x_igcej_to_plot[i,x_igcej_aux],self.data.y_igcej_to_plot[i,y_igcej_aux],'x',color='red',markersize=2) | |||
|
|
816 | ax.plot(self.data.x_ibad_to_plot[i,x_ibad_aux],self.data.y_ibad_to_plot[i,y_ibad_aux],'X',color='red',markersize=2) | |||
|
|
817 | ||||
|
|
818 | self.xstep_given = (self.xmax-self.xmin)/(self.data.DPL-1) | |||
|
|
819 | self.ystep_given = 50 | |||
|
|
820 | ax.yaxis.set_minor_locator(MultipleLocator(15)) | |||
|
|
821 | ax.grid(which='minor') | |||
|
|
822 | ||||
|
|
823 | ||||
|
|
824 | ||||
|
|
825 | else: | |||
|
|
826 | self.clear_figures() | |||
|
|
827 | ||||
|
|
828 | for i in range(self.data.NSHTS): | |||
|
|
829 | x_aux = numpy.isfinite(self.x[i,:]) | |||
|
|
830 | y_aux = numpy.isfinite(self.y[i,:]) | |||
|
|
831 | yerr_aux = numpy.isfinite(self.data.acfs_error_to_plot[i,:]) | |||
|
|
832 | x_igcej_aux = numpy.isfinite(self.data.x_igcej_to_plot[i,:]) | |||
|
|
833 | y_igcej_aux = numpy.isfinite(self.data.y_igcej_to_plot[i,:]) | |||
|
|
834 | x_ibad_aux = numpy.isfinite(self.data.x_ibad_to_plot[i,:]) | |||
|
|
835 | y_ibad_aux = numpy.isfinite(self.data.y_ibad_to_plot[i,:]) | |||
|
|
836 | if self.x[i,:][~numpy.isnan(self.x[i,:])].shape[0]>2: | |||
|
|
837 | ax.errorbar(self.x[i,x_aux], self.y[i,y_aux], yerr=self.data.acfs_error_to_plot[i,x_aux],linewidth=1.0,markersize=2,color='b',marker='o') | |||
|
|
838 | ax.plot(self.data.x_igcej_to_plot[i,x_igcej_aux],self.data.y_igcej_to_plot[i,y_igcej_aux],'x',color='red',markersize=2) | |||
|
|
839 | ax.plot(self.data.x_ibad_to_plot[i,x_ibad_aux],self.data.y_ibad_to_plot[i,y_ibad_aux],'X',color='red',markersize=2) | |||
|
|
840 | ax.yaxis.set_minor_locator(MultipleLocator(15)) | |||
|
|
841 | ||||
|
|
842 | ||||
|
|
843 | ||||
|
|
844 | ||||
|
|
845 | class ACFsLPPlot(Plot): | |||
|
|
846 | ''' | |||
|
|
847 | Plot for ACFs Double Pulse Experiment | |||
|
|
848 | ''' | |||
|
|
849 | ||||
|
|
850 | CODE = 'acfs_LP' | |||
|
|
851 | plot_name = 'ACF' | |||
|
|
852 | plot_type = 'scatterbuffer' | |||
|
|
853 | ||||
|
|
854 | ||||
|
|
855 | def setup(self): | |||
|
|
856 | #self.xaxis = 'time' | |||
|
|
857 | self.ncols = 1 | |||
|
|
858 | self.nrows = 1 | |||
|
|
859 | self.nplots = 1 | |||
|
|
860 | self.ylabel = 'Range [km]' | |||
|
|
861 | self.xlabel = 'lags (ms)' | |||
|
|
862 | self.width = 3.5 | |||
|
|
863 | self.height = 7 | |||
|
|
864 | self.colorbar = False | |||
|
|
865 | if not self.titles: | |||
|
|
866 | self.titles = self.data.parameters \ | |||
|
|
867 | if self.data.parameters else ['{}'.format(self.CODE.upper())] | |||
|
|
868 | ||||
|
|
869 | ||||
|
|
870 | ||||
|
|
871 | def plot(self): | |||
|
|
872 | ||||
|
|
873 | self.x = self.data.lags_LP_to_plot | |||
|
|
874 | self.y = self.data['acfs_LP'][:,-1] | |||
|
|
875 | ||||
|
|
876 | self.xmin = 0.0 | |||
|
|
877 | self.xmax = 1.5 | |||
|
|
878 | ||||
|
|
879 | ax = self.axes[0] | |||
|
|
880 | ||||
|
|
881 | if ax.firsttime: | |||
|
|
882 | ||||
|
|
883 | for i in range(self.data.NACF): | |||
|
|
884 | x_aux = numpy.isfinite(self.x[i,:]) | |||
|
|
885 | y_aux = numpy.isfinite(self.y[i,:]) | |||
|
|
886 | yerr_aux = numpy.isfinite(self.data.errors[i,:]) | |||
|
|
887 | ||||
|
|
888 | if self.x[i,:][~numpy.isnan(self.x[i,:])].shape[0]>2: | |||
|
|
889 | ax.errorbar(self.x[i,x_aux], self.y[i,y_aux], yerr=self.data.errors[i,x_aux],color='b',linewidth=1.0,markersize=2,ecolor='r') | |||
|
|
890 | ||||
|
|
891 | #self.xstep_given = (self.xmax-self.xmin)/(self.data.NLAG-1) | |||
|
|
892 | self.xstep_given=0.3 | |||
|
|
893 | self.ystep_given = 200 | |||
|
|
894 | ax.yaxis.set_minor_locator(MultipleLocator(15)) | |||
|
|
895 | ax.grid(which='minor') | |||
|
|
896 | ||||
|
|
897 | else: | |||
|
|
898 | self.clear_figures() | |||
|
|
899 | ||||
|
|
900 | for i in range(self.data.NACF): | |||
|
|
901 | x_aux = numpy.isfinite(self.x[i,:]) | |||
|
|
902 | y_aux = numpy.isfinite(self.y[i,:]) | |||
|
|
903 | yerr_aux = numpy.isfinite(self.data.errors[i,:]) | |||
|
|
904 | ||||
|
|
905 | if self.x[i,:][~numpy.isnan(self.x[i,:])].shape[0]>2: | |||
|
|
906 | ax.errorbar(self.x[i,x_aux], self.y[i,y_aux], yerr=self.data.errors[i,x_aux],color='b',linewidth=1.0,markersize=2,ecolor='r') | |||
|
|
907 | ||||
|
|
908 | ax.yaxis.set_minor_locator(MultipleLocator(15)) | |||
|
|
909 | ||||
|
|
910 | ||||
|
|
911 | class CrossProductsPlot(Plot): | |||
|
|
912 | ''' | |||
|
|
913 | Plot for cross products | |||
|
|
914 | ''' | |||
|
|
915 | ||||
|
|
916 | CODE = 'crossprod' | |||
|
|
917 | plot_name = 'Cross Products' | |||
|
|
918 | plot_type = 'scatterbuffer' | |||
|
|
919 | ||||
|
|
920 | ||||
|
|
921 | def setup(self): | |||
|
|
922 | ||||
|
|
923 | self.ncols = 3 | |||
|
|
924 | self.nrows = 1 | |||
|
|
925 | self.nplots = 3 | |||
|
|
926 | self.ylabel = 'Range [km]' | |||
|
|
927 | ||||
|
|
928 | self.width = 3.5*self.nplots | |||
|
|
929 | self.height = 5.5 | |||
|
|
930 | self.colorbar = False | |||
|
|
931 | self.titles = [] | |||
|
|
932 | ||||
|
|
933 | def plot(self): | |||
|
|
934 | ||||
|
|
935 | self.x = self.data['crossprod'][:,-1,:,:,:,:] | |||
|
|
936 | ||||
|
|
937 | ||||
|
|
938 | ||||
|
|
939 | ||||
|
|
940 | self.y = self.data.heights[0:self.data.NDP] | |||
|
|
941 | ||||
|
|
942 | ||||
|
|
943 | ||||
|
|
944 | for n, ax in enumerate(self.axes): | |||
|
|
945 | ||||
|
|
946 | self.xmin=numpy.min(numpy.concatenate((self.x[n][0,20:30,0,0],self.x[n][1,20:30,0,0],self.x[n][2,20:30,0,0],self.x[n][3,20:30,0,0]))) | |||
|
|
947 | self.xmax=numpy.max(numpy.concatenate((self.x[n][0,20:30,0,0],self.x[n][1,20:30,0,0],self.x[n][2,20:30,0,0],self.x[n][3,20:30,0,0]))) | |||
|
|
948 | ||||
|
|
949 | ||||
|
|
950 | if ax.firsttime: | |||
|
|
951 | ||||
|
|
952 | self.autoxticks=False | |||
|
|
953 | if n==0: | |||
|
|
954 | label1='kax' | |||
|
|
955 | label2='kay' | |||
|
|
956 | label3='kbx' | |||
|
|
957 | label4='kby' | |||
|
|
958 | self.xlimits=[(self.xmin,self.xmax)] | |||
|
|
959 | elif n==1: | |||
|
|
960 | label1='kax2' | |||
|
|
961 | label2='kay2' | |||
|
|
962 | label3='kbx2' | |||
|
|
963 | label4='kby2' | |||
|
|
964 | self.xlimits.append((self.xmin,self.xmax)) | |||
|
|
965 | elif n==2: | |||
|
|
966 | label1='kaxay' | |||
|
|
967 | label2='kbxby' | |||
|
|
968 | label3='kaxbx' | |||
|
|
969 | label4='kaxby' | |||
|
|
970 | self.xlimits.append((self.xmin,self.xmax)) | |||
|
|
971 | ||||
|
|
972 | ||||
|
|
973 | ax.plotline1 = ax.plot(self.x[n][0,:,0,0], self.y, color='r',linewidth=2.0, label=label1) | |||
|
|
974 | ax.plotline2 = ax.plot(self.x[n][1,:,0,0], self.y, color='k',linewidth=2.0, label=label2) | |||
|
|
975 | ax.plotline3 = ax.plot(self.x[n][2,:,0,0], self.y, color='b',linewidth=2.0, label=label3) | |||
|
|
976 | ax.plotline4 = ax.plot(self.x[n][3,:,0,0], self.y, color='m',linewidth=2.0, label=label4) | |||
|
|
977 | ax.legend(loc='upper right') | |||
|
|
978 | ax.set_xlim(self.xmin, self.xmax) | |||
|
|
979 | self.titles.append('{}'.format(self.plot_name.upper())) | |||
|
|
980 | #plt.tight_layout() | |||
|
|
981 | ||||
|
|
982 | ||||
|
|
983 | else: | |||
|
|
984 | ||||
|
|
985 | if n==0: | |||
|
|
986 | self.xlimits=[(self.xmin,self.xmax)] | |||
|
|
987 | else: | |||
|
|
988 | self.xlimits.append((self.xmin,self.xmax)) | |||
|
|
989 | ||||
|
|
990 | ax.set_xlim(self.xmin, self.xmax) | |||
|
|
991 | ||||
|
|
992 | ||||
|
|
993 | ax.plotline1[0].set_data(self.x[n][0,:,0,0],self.y) | |||
|
|
994 | ax.plotline2[0].set_data(self.x[n][1,:,0,0],self.y) | |||
|
|
995 | ax.plotline3[0].set_data(self.x[n][2,:,0,0],self.y) | |||
|
|
996 | ax.plotline4[0].set_data(self.x[n][3,:,0,0],self.y) | |||
|
|
997 | self.titles.append('{}'.format(self.plot_name.upper())) | |||
|
|
998 | #plt.tight_layout() | |||
|
|
999 | ||||
|
|
1000 | ||||
|
|
1001 | ||||
|
|
1002 | class CrossProductsLPPlot(Plot): | |||
|
|
1003 | ''' | |||
|
|
1004 | Plot for cross products LP | |||
|
|
1005 | ''' | |||
|
|
1006 | ||||
|
|
1007 | CODE = 'crossprodlp' | |||
|
|
1008 | plot_name = 'Cross Products LP' | |||
|
|
1009 | plot_type = 'scatterbuffer' | |||
|
|
1010 | ||||
|
|
1011 | ||||
|
|
1012 | def setup(self): | |||
|
|
1013 | ||||
|
|
1014 | self.ncols = 2 | |||
|
|
1015 | self.nrows = 1 | |||
|
|
1016 | self.nplots = 2 | |||
|
|
1017 | self.ylabel = 'Range [km]' | |||
|
|
1018 | self.xlabel = 'dB' | |||
|
|
1019 | self.width = 3.5*self.nplots | |||
|
|
1020 | self.height = 5.5 | |||
|
|
1021 | self.colorbar = False | |||
|
|
1022 | self.titles = [] | |||
|
|
1023 | self.plotline_array=numpy.zeros((2,self.data.NLAG),dtype=object) | |||
|
|
1024 | def plot(self): | |||
|
|
1025 | ||||
|
|
1026 | ||||
|
|
1027 | self.x = self.data[self.CODE][:,-1,:,:] | |||
|
|
1028 | ||||
|
|
1029 | ||||
|
|
1030 | self.y = self.data.heights[0:self.data.NRANGE] | |||
|
|
1031 | ||||
|
|
1032 | ||||
|
|
1033 | label_array=numpy.array(['lag '+ str(x) for x in range(self.data.NLAG)]) | |||
|
|
1034 | color_array=['r','k','g','b','c','m','y','orange','steelblue','purple','peru','darksalmon','grey','limegreen','olive','midnightblue'] | |||
|
|
1035 | ||||
|
|
1036 | ||||
|
|
1037 | for n, ax in enumerate(self.axes): | |||
|
|
1038 | ||||
|
|
1039 | self.xmin=30 | |||
|
|
1040 | self.xmax=70 | |||
|
|
1041 | #print(self.x[0,12:15,n]) | |||
|
|
1042 | #input() | |||
|
|
1043 | #self.xmin=numpy.min(numpy.concatenate((self.x[0,:,n],self.x[1,:,n]))) | |||
|
|
1044 | #self.xmax=numpy.max(numpy.concatenate((self.x[0,:,n],self.x[1,:,n]))) | |||
|
|
1045 | ||||
|
|
1046 | #print("before",self.plotline_array) | |||
|
|
1047 | ||||
|
|
1048 | if ax.firsttime: | |||
|
|
1049 | ||||
|
|
1050 | self.autoxticks=False | |||
|
|
1051 | ||||
|
|
1052 | ||||
|
|
1053 | for i in range(self.data.NLAG): | |||
|
|
1054 | #print(i) | |||
|
|
1055 | #print(numpy.shape(self.x)) | |||
|
|
1056 | self.plotline_array[n,i], = ax.plot(self.x[i,:,n], self.y, color=color_array[i],linewidth=1.0, label=label_array[i]) | |||
|
|
1057 | #ax.plotline1 = ax.plot(self.x[0,:,n], self.y, color='r',linewidth=2.0, label=label_array[0]) | |||
|
|
1058 | #ax.plotline2 = ax.plot(self.x[n][1,:,0,0], self.y, color='k',linewidth=2.0, label=label2) | |||
|
|
1059 | #ax.plotline3 = ax.plot(self.x[n][2,:,0,0], self.y, color='b',linewidth=2.0, label=label3) | |||
|
|
1060 | #ax.plotline4 = ax.plot(self.x[n][3,:,0,0], self.y, color='m',linewidth=2.0, label=label4) | |||
|
|
1061 | ||||
|
|
1062 | ||||
|
|
1063 | #print(self.plotline_array) | |||
|
|
1064 | ||||
|
|
1065 | ||||
|
|
1066 | ||||
|
|
1067 | ax.legend(loc='upper right') | |||
|
|
1068 | ax.set_xlim(self.xmin, self.xmax) | |||
|
|
1069 | if n==0: | |||
|
|
1070 | self.titles.append('{} CH0'.format(self.plot_name.upper())) | |||
|
|
1071 | if n==1: | |||
|
|
1072 | self.titles.append('{} CH1'.format(self.plot_name.upper())) | |||
|
|
1073 | ||||
|
|
1074 | #plt.tight_layout() | |||
|
|
1075 | ||||
|
|
1076 | else: | |||
|
|
1077 | #print(self.plotline_array) | |||
|
|
1078 | for i in range(self.data.NLAG): | |||
|
|
1079 | ||||
|
|
1080 | self.plotline_array[n,i].set_data(self.x[i,:,n],self.y) | |||
|
|
1081 | ||||
|
|
1082 | ||||
|
|
1083 | ||||
|
|
1084 | #ax.plotline1[0].set_data(self.x[n][0,:,0,0],self.y) | |||
|
|
1085 | #ax.plotline2[0].set_data(self.x[n][1,:,0,0],self.y) | |||
|
|
1086 | #ax.plotline3[0].set_data(self.x[n][2,:,0,0],self.y) | |||
|
|
1087 | #ax.plotline4[0].set_data(self.x[n][3,:,0,0],self.y) | |||
|
|
1088 | ||||
|
|
1089 | if n==0: | |||
|
|
1090 | self.titles.append('{} CH0'.format(self.plot_name.upper())) | |||
|
|
1091 | if n==1: | |||
|
|
1092 | self.titles.append('{} CH1'.format(self.plot_name.upper())) | |||
|
|
1093 | ||||
|
|
1094 | #plt.tight_layout() | |||
|
|
1095 | ||||
|
|
1096 | ||||
|
|
1097 | class NoiseDPPlot(NoisePlot): | |||
|
|
1098 | ''' | |||
|
|
1099 | Plot for noise Double Pulse | |||
|
|
1100 | ''' | |||
|
|
1101 | ||||
|
|
1102 | CODE = 'noisedp' | |||
|
|
1103 | plot_name = 'Noise' | |||
|
|
1104 | plot_type = 'scatterbuffer' | |||
|
|
1105 | ||||
|
|
1106 | ||||
|
|
1107 | class XmitWaveformPlot(Plot): | |||
|
|
1108 | ''' | |||
|
|
1109 | Plot for xmit waveform | |||
|
|
1110 | ''' | |||
|
|
1111 | ||||
|
|
1112 | CODE = 'xmit' | |||
|
|
1113 | plot_name = 'Xmit Waveform' | |||
|
|
1114 | plot_type = 'scatterbuffer' | |||
|
|
1115 | ||||
|
|
1116 | ||||
|
|
1117 | def setup(self): | |||
|
|
1118 | ||||
|
|
1119 | self.ncols = 1 | |||
|
|
1120 | self.nrows = 1 | |||
|
|
1121 | self.nplots = 1 | |||
|
|
1122 | self.ylabel = '' | |||
|
|
1123 | self.xlabel = 'Number of Lag' | |||
|
|
1124 | self.width = 5.5 | |||
|
|
1125 | self.height = 3.5 | |||
|
|
1126 | self.colorbar = False | |||
|
|
1127 | if not self.titles: | |||
|
|
1128 | self.titles = self.data.parameters \ | |||
|
|
1129 | if self.data.parameters else ['{}'.format(self.plot_name.upper())] | |||
|
|
1130 | ||||
|
|
1131 | def plot(self): | |||
|
|
1132 | ||||
|
|
1133 | self.x = numpy.arange(0,self.data.NLAG,1,'float32') | |||
|
|
1134 | self.y = self.data['xmit'][:,-1,:] | |||
|
|
1135 | ||||
|
|
1136 | self.xmin = 0 | |||
|
|
1137 | self.xmax = self.data.NLAG-1 | |||
|
|
1138 | self.ymin = -1.0 | |||
|
|
1139 | self.ymax = 1.0 | |||
|
|
1140 | ax = self.axes[0] | |||
|
|
1141 | ||||
|
|
1142 | if ax.firsttime: | |||
|
|
1143 | ax.plotline0=ax.plot(self.x,self.y[0,:],color='blue') | |||
|
|
1144 | ax.plotline1=ax.plot(self.x,self.y[1,:],color='red') | |||
|
|
1145 | secax=ax.secondary_xaxis(location=0.5) | |||
|
|
1146 | secax.xaxis.tick_bottom() | |||
|
|
1147 | secax.tick_params( labelleft=False, labeltop=False, | |||
|
|
1148 | labelright=False, labelbottom=False) | |||
|
|
1149 | ||||
|
|
1150 | self.xstep_given = 3 | |||
|
|
1151 | self.ystep_given = .25 | |||
|
|
1152 | secax.set_xticks(numpy.linspace(self.xmin, self.xmax, 6)) #only works on matplotlib.version>3.2 | |||
|
|
1153 | ||||
|
|
1154 | else: | |||
|
|
1155 | ax.plotline0[0].set_data(self.x,self.y[0,:]) | |||
|
|
1156 | ax.plotline1[0].set_data(self.x,self.y[1,:]) | |||
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1 | ''' | |||
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2 | Created on Jun 9, 2020 | |||
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3 | ||||
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4 | @author: Roberto Flores | |||
|
|
5 | ''' | |||
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6 | ||||
|
|
7 | import os | |||
|
|
8 | import sys | |||
|
|
9 | import time | |||
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10 | ||||
|
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11 | import struct | |||
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12 | ||||
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13 | ||||
|
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14 | import datetime | |||
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15 | ||||
|
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16 | import numpy | |||
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17 | ||||
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18 | ||||
|
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19 | import schainpy.admin | |||
|
|
20 | from schainpy.model.io.jroIO_base import LOCALTIME, Reader | |||
|
|
21 | from schainpy.model.data.jroheaderIO import BasicHeader, SystemHeader, RadarControllerHeader, ProcessingHeader | |||
|
|
22 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator | |||
|
|
23 | from schainpy.model.data.jrodata import Voltage, Parameters | |||
|
|
24 | from schainpy.utils import log | |||
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|
25 | ||||
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26 | ||||
|
|
27 | class DatReader(Reader, ProcessingUnit): | |||
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28 | ||||
|
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29 | def __init__(self): | |||
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30 | ||||
|
|
31 | ProcessingUnit.__init__(self) | |||
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32 | self.basicHeaderObj = BasicHeader(LOCALTIME) | |||
|
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33 | self.systemHeaderObj = SystemHeader() | |||
|
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34 | self.radarControllerHeaderObj = RadarControllerHeader() | |||
|
|
35 | self.processingHeaderObj = ProcessingHeader() | |||
|
|
36 | self.dataOut = Parameters() | |||
|
|
37 | #print(self.basicHeaderObj.timezone) | |||
|
|
38 | #self.counter_block=0 | |||
|
|
39 | self.format='dat' | |||
|
|
40 | self.flagNoMoreFiles = 0 | |||
|
|
41 | self.filename = None | |||
|
|
42 | self.intervals = set() | |||
|
|
43 | #self.datatime = datetime.datetime(1900,1,1) | |||
|
|
44 | ||||
|
|
45 | self.filefmt = "***%Y%m%d*******" | |||
|
|
46 | ||||
|
|
47 | self.padding=numpy.zeros(1,'int32') | |||
|
|
48 | self.hsize=numpy.zeros(1,'int32') | |||
|
|
49 | self.bufsize=numpy.zeros(1,'int32') | |||
|
|
50 | self.nr=numpy.zeros(1,'int32') | |||
|
|
51 | self.ngates=numpy.zeros(1,'int32') ### ### ### 2 | |||
|
|
52 | self.time1=numpy.zeros(1,'uint64') # pos 3 | |||
|
|
53 | self.time2=numpy.zeros(1,'uint64') # pos 4 | |||
|
|
54 | self.lcounter=numpy.zeros(1,'int32') | |||
|
|
55 | self.groups=numpy.zeros(1,'int32') | |||
|
|
56 | self.system=numpy.zeros(4,'int8') # pos 7 | |||
|
|
57 | self.h0=numpy.zeros(1,'float32') | |||
|
|
58 | self.dh=numpy.zeros(1,'float32') | |||
|
|
59 | self.ipp=numpy.zeros(1,'float32') | |||
|
|
60 | self.process=numpy.zeros(1,'int32') | |||
|
|
61 | self.tx=numpy.zeros(1,'int32') | |||
|
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62 | ||||
|
|
63 | self.ngates1=numpy.zeros(1,'int32') ### ### ### 13 | |||
|
|
64 | self.time0=numpy.zeros(1,'uint64') # pos 14 | |||
|
|
65 | self.nlags=numpy.zeros(1,'int32') | |||
|
|
66 | self.nlags1=numpy.zeros(1,'int32') | |||
|
|
67 | self.txb=numpy.zeros(1,'float32') ### ### ### 17 | |||
|
|
68 | self.time3=numpy.zeros(1,'uint64') # pos 18 | |||
|
|
69 | self.time4=numpy.zeros(1,'uint64') # pos 19 | |||
|
|
70 | self.h0_=numpy.zeros(1,'float32') | |||
|
|
71 | self.dh_=numpy.zeros(1,'float32') | |||
|
|
72 | self.ipp_=numpy.zeros(1,'float32') | |||
|
|
73 | self.txa_=numpy.zeros(1,'float32') | |||
|
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74 | ||||
|
|
75 | self.pad=numpy.zeros(100,'int32') | |||
|
|
76 | ||||
|
|
77 | self.nbytes=numpy.zeros(1,'int32') | |||
|
|
78 | self.limits=numpy.zeros(1,'int32') | |||
|
|
79 | self.ngroups=numpy.zeros(1,'int32') ### ### ### 27 | |||
|
|
80 | #Make the header list | |||
|
|
81 | #header=[hsize,bufsize,nr,ngates,time1,time2,lcounter,groups,system,h0,dh,ipp,process,tx,padding,ngates1,time0,nlags,nlags1,padding,txb,time3,time4,h0_,dh_,ipp_,txa_,pad,nbytes,limits,padding,ngroups] | |||
|
|
82 | self.header=[self.hsize,self.bufsize,self.nr,self.ngates,self.time1,self.time2,self.lcounter,self.groups,self.system,self.h0,self.dh,self.ipp,self.process,self.tx,self.ngates1,self.padding,self.time0,self.nlags,self.nlags1,self.padding,self.txb,self.time3,self.time4,self.h0_,self.dh_,self.ipp_,self.txa_,self.pad,self.nbytes,self.limits,self.padding,self.ngroups] | |||
|
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83 | ||||
|
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84 | ||||
|
|
85 | ||||
|
|
86 | def setup(self, **kwargs): | |||
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87 | ||||
|
|
88 | self.set_kwargs(**kwargs) | |||
|
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89 | ||||
|
|
90 | ||||
|
|
91 | if self.path is None: | |||
|
|
92 | raise ValueError('The path is not valid') | |||
|
|
93 | ||||
|
|
94 | self.open_file = open | |||
|
|
95 | self.open_mode = 'rb' | |||
|
|
96 | ||||
|
|
97 | ||||
|
|
98 | ||||
|
|
99 | if self.format is None: | |||
|
|
100 | raise ValueError('The format is not valid') | |||
|
|
101 | elif self.format.lower() in ('dat'): | |||
|
|
102 | self.ext = '.dat' | |||
|
|
103 | elif self.format.lower() in ('out'): | |||
|
|
104 | self.ext = '.out' | |||
|
|
105 | ||||
|
|
106 | ||||
|
|
107 | log.log("Searching files in {}".format(self.path), self.name) | |||
|
|
108 | self.filenameList = self.searchFilesOffLine(self.path, self.startDate, | |||
|
|
109 | self.endDate, self.expLabel, self.ext, self.walk, self.filefmt, self.folderfmt) | |||
|
|
110 | #print(self.path) | |||
|
|
111 | #print(self.filenameList) | |||
|
|
112 | #input() | |||
|
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113 | ||||
|
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114 | ||||
|
|
115 | self.setNextFile() | |||
|
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116 | ||||
|
|
117 | def readFirstHeader(self): | |||
|
|
118 | '''Read header and data''' | |||
|
|
119 | ||||
|
|
120 | #self.flag_same_file=1 | |||
|
|
121 | self.counter_block=0 | |||
|
|
122 | self.parseHeader() | |||
|
|
123 | self.parseData() | |||
|
|
124 | self.blockIndex = 0 | |||
|
|
125 | ||||
|
|
126 | return | |||
|
|
127 | ||||
|
|
128 | def parseHeader(self): | |||
|
|
129 | ''' | |||
|
|
130 | ''' | |||
|
|
131 | ||||
|
|
132 | for i in range(len(self.header)): | |||
|
|
133 | for j in range(len(self.header[i])): | |||
|
|
134 | #print("len(header[i]) ",len(header[i])) | |||
|
|
135 | #input() | |||
|
|
136 | temp=self.fp.read(int(self.header[i].itemsize)) | |||
|
|
137 | if isinstance(self.header[i][0], numpy.int32): | |||
|
|
138 | #print(struct.unpack('i', temp)[0]) | |||
|
|
139 | self.header[i][0]=struct.unpack('i', temp)[0] | |||
|
|
140 | if isinstance(self.header[i][0], numpy.uint64): | |||
|
|
141 | self.header[i][0]=struct.unpack('q', temp)[0] | |||
|
|
142 | if isinstance(self.header[i][0], numpy.int8): | |||
|
|
143 | self.header[i][0]=struct.unpack('B', temp)[0] | |||
|
|
144 | if isinstance(self.header[i][0], numpy.float32): | |||
|
|
145 | self.header[i][0]=struct.unpack('f', temp)[0] | |||
|
|
146 | ||||
|
|
147 | self.fp.seek(0,0) | |||
|
|
148 | if int(self.header[1][0])==int(81864): | |||
|
|
149 | self.experiment='DP' | |||
|
|
150 | ||||
|
|
151 | elif int(self.header[1][0])==int(185504): | |||
|
|
152 | self.experiment='HP' | |||
|
|
153 | ||||
|
|
154 | ||||
|
|
155 | self.total_blocks=os.stat(self.filename).st_size//self.header[1][0] | |||
|
|
156 | ||||
|
|
157 | ||||
|
|
158 | def parseData(self): | |||
|
|
159 | ''' | |||
|
|
160 | ''' | |||
|
|
161 | if self.experiment=='DP': | |||
|
|
162 | self.header[15][0]=66 | |||
|
|
163 | self.header[18][0]=16 | |||
|
|
164 | self.header[17][0]=11 | |||
|
|
165 | self.header[2][0]=2 | |||
|
|
166 | ||||
|
|
167 | ||||
|
|
168 | self.noise=numpy.zeros(self.header[2][0],'float32') #self.header[2][0] | |||
|
|
169 | #tmpx=numpy.zeros((self.header[15][0],self.header[17][0],2),'float32') | |||
|
|
170 | self.kax=numpy.zeros((self.header[15][0],self.header[17][0],2),'float32') | |||
|
|
171 | self.kay=numpy.zeros((self.header[15][0],self.header[17][0],2),'float32') | |||
|
|
172 | self.kbx=numpy.zeros((self.header[15][0],self.header[17][0],2),'float32') | |||
|
|
173 | self.kby=numpy.zeros((self.header[15][0],self.header[17][0],2),'float32') | |||
|
|
174 | self.kax2=numpy.zeros((self.header[15][0],self.header[17][0],2),'float32') | |||
|
|
175 | self.kay2=numpy.zeros((self.header[15][0],self.header[17][0],2),'float32') | |||
|
|
176 | self.kbx2=numpy.zeros((self.header[15][0],self.header[17][0],2),'float32') | |||
|
|
177 | self.kby2=numpy.zeros((self.header[15][0],self.header[17][0],2),'float32') | |||
|
|
178 | self.kaxbx=numpy.zeros((self.header[15][0],self.header[17][0],2),'float32') | |||
|
|
179 | self.kaxby=numpy.zeros((self.header[15][0],self.header[17][0],2),'float32') | |||
|
|
180 | self.kaybx=numpy.zeros((self.header[15][0],self.header[17][0],2),'float32') | |||
|
|
181 | self.kayby=numpy.zeros((self.header[15][0],self.header[17][0],2),'float32') | |||
|
|
182 | self.kaxay=numpy.zeros((self.header[15][0],self.header[17][0],2),'float32') | |||
|
|
183 | self.kbxby=numpy.zeros((self.header[15][0],self.header[17][0],2),'float32') | |||
|
|
184 | self.output_LP_real=numpy.zeros((self.header[18][0],200,self.header[2][0]),'float32') | |||
|
|
185 | self.output_LP_imag=numpy.zeros((self.header[18][0],200,self.header[2][0]),'float32') | |||
|
|
186 | self.final_cross_products=[self.kax,self.kay,self.kbx,self.kby,self.kax2,self.kay2,self.kbx2,self.kby2,self.kaxbx,self.kaxby,self.kaybx,self.kayby,self.kaxay,self.kbxby] | |||
|
|
187 | #self.final_cross_products=[tmpx,tmpx,tmpx,tmpx,tmpx,tmpx,tmpx,tmpx,tmpx,tmpx,tmpx,tmpx,tmpx,tmpx] | |||
|
|
188 | ||||
|
|
189 | #print("pos: ",self.fp.tell()) | |||
|
|
190 | ||||
|
|
191 | ||||
|
|
192 | def readNextBlock(self): | |||
|
|
193 | ||||
|
|
194 | while True: | |||
|
|
195 | self.flagDiscontinuousBlock = 0 | |||
|
|
196 | #print(os.stat(self.filename).st_size) | |||
|
|
197 | #print(os.stat(self.filename).st_size//self.header[1][0]) | |||
|
|
198 | #os.stat(self.fp) | |||
|
|
199 | if self.counter_block == self.total_blocks: | |||
|
|
200 | ||||
|
|
201 | self.setNextFile() | |||
|
|
202 | ||||
|
|
203 | self.readBlock() | |||
|
|
204 | #self.counter_block+=1 | |||
|
|
205 | ||||
|
|
206 | if (self.datatime < datetime.datetime.combine(self.startDate, self.startTime)) or \ | |||
|
|
207 | (self.datatime > datetime.datetime.combine(self.endDate, self.endTime)): | |||
|
|
208 | ||||
|
|
209 | #print(self.datatime) | |||
|
|
210 | #print(datetime.datetime.combine(self.startDate, self.startTime)) | |||
|
|
211 | #print(datetime.datetime.combine(self.endDate, self.endTime)) | |||
|
|
212 | #print("warning") | |||
|
|
213 | log.warning( | |||
|
|
214 | 'Reading Block No. {}/{} -> {} [Skipping]'.format( | |||
|
|
215 | self.counter_block, | |||
|
|
216 | self.total_blocks, | |||
|
|
217 | self.datatime.ctime()), | |||
|
|
218 | 'DATReader') | |||
|
|
219 | continue | |||
|
|
220 | break | |||
|
|
221 | ||||
|
|
222 | log.log( | |||
|
|
223 | 'Reading Block No. {}/{} -> {}'.format( | |||
|
|
224 | self.counter_block, | |||
|
|
225 | self.total_blocks, | |||
|
|
226 | self.datatime.ctime()), | |||
|
|
227 | 'DATReader') | |||
|
|
228 | ||||
|
|
229 | return 1 | |||
|
|
230 | ||||
|
|
231 | def readBlock(self): | |||
|
|
232 | ''' | |||
|
|
233 | ''' | |||
|
|
234 | ||||
|
|
235 | self.npos=self.counter_block*self.header[1][0] | |||
|
|
236 | #print(self.counter_block) | |||
|
|
237 | self.fp.seek(self.npos, 0) | |||
|
|
238 | self.counter_block+=1 | |||
|
|
239 | #print("fpos1: ",self.fp.tell()) | |||
|
|
240 | ||||
|
|
241 | self.read_header() | |||
|
|
242 | ||||
|
|
243 | #put by hand because old files didn't save it in the header | |||
|
|
244 | if self.experiment=='DP': | |||
|
|
245 | self.header[15][0]=66 | |||
|
|
246 | self.header[18][0]=16 | |||
|
|
247 | self.header[17][0]=11 | |||
|
|
248 | self.header[2][0]=2 | |||
|
|
249 | ######################################### | |||
|
|
250 | ||||
|
|
251 | if self.experiment=="HP": | |||
|
|
252 | self.long_pulse_products() | |||
|
|
253 | ||||
|
|
254 | self.read_cross_products() | |||
|
|
255 | ||||
|
|
256 | ||||
|
|
257 | self.read_noise() | |||
|
|
258 | ||||
|
|
259 | ||||
|
|
260 | return | |||
|
|
261 | ||||
|
|
262 | ||||
|
|
263 | ||||
|
|
264 | def read_header(self): | |||
|
|
265 | ||||
|
|
266 | ||||
|
|
267 | for i in range(len(self.header)): | |||
|
|
268 | for j in range(len(self.header[i])): | |||
|
|
269 | #print("len(header[i]) ",len(header[i])) | |||
|
|
270 | #input() | |||
|
|
271 | temp=self.fp.read(int(self.header[i].itemsize)) | |||
|
|
272 | #if(b''==temp): | |||
|
|
273 | # self.setNextFile() | |||
|
|
274 | # self.flag_same_file=0 | |||
|
|
275 | if isinstance(self.header[i][0], numpy.int32): | |||
|
|
276 | #print(struct.unpack('i', temp)[0]) | |||
|
|
277 | self.header[i][0]=struct.unpack('i', temp)[0] | |||
|
|
278 | if isinstance(self.header[i][0], numpy.uint64): | |||
|
|
279 | self.header[i][0]=struct.unpack('q', temp)[0] | |||
|
|
280 | if isinstance(self.header[i][0], numpy.int8): | |||
|
|
281 | self.header[i][0]=struct.unpack('B', temp)[0] | |||
|
|
282 | if isinstance(self.header[i][0], numpy.float32): | |||
|
|
283 | self.header[i][0]=struct.unpack('f', temp)[0] | |||
|
|
284 | #else: | |||
|
|
285 | # continue | |||
|
|
286 | #self.fp.seek(self.npos_aux, 0) | |||
|
|
287 | # break | |||
|
|
288 | ||||
|
|
289 | #print("fpos2: ",self.fp.tell()) | |||
|
|
290 | #log.success('Parameters found: {}'.format(self.parameters), | |||
|
|
291 | # 'DATReader') | |||
|
|
292 | #print("Success") | |||
|
|
293 | #self.TimeBlockSeconds_for_dp_power = self.header[4][0]#-((self.dataOut.nint-1)*self.dataOut.NAVG*2) | |||
|
|
294 | #print(dataOut.TimeBlockSeconds_for_dp_power) | |||
|
|
295 | ||||
|
|
296 | #self.datatime=datetime.datetime.fromtimestamp(self.header[4][0]).strftime("%Y-%m-%d %H:%M:%S") | |||
|
|
297 | #print(self.header[4][0]) | |||
|
|
298 | self.datatime=datetime.datetime.fromtimestamp(self.header[4][0]) | |||
|
|
299 | #print(self.header[1][0]) | |||
|
|
300 | ||||
|
|
301 | def long_pulse_products(self): | |||
|
|
302 | temp=self.fp.read(self.header[18][0]*self.header[2][0]*200*8) | |||
|
|
303 | ii=0 | |||
|
|
304 | ||||
|
|
305 | for l in range(self.header[18][0]): #lag | |||
|
|
306 | for r in range(self.header[2][0]): # channels | |||
|
|
307 | for k in range(200): #RANGE## generalizar | |||
|
|
308 | self.output_LP_real[l,k,r]=struct.unpack('f', temp[ii:ii+4])[0] | |||
|
|
309 | ii=ii+4 | |||
|
|
310 | self.output_LP_imag[l,k,r]=struct.unpack('f', temp[ii:ii+4])[0] | |||
|
|
311 | ii=ii+4 | |||
|
|
312 | ||||
|
|
313 | #print(self.output_LP_real[1,1,1]) | |||
|
|
314 | #print(self.output_LP_imag[1,1,1]) | |||
|
|
315 | def read_cross_products(self): | |||
|
|
316 | ||||
|
|
317 | for ind in range(len(self.final_cross_products)): #final cross products | |||
|
|
318 | temp=self.fp.read(self.header[17][0]*2*self.header[15][0]*4) #*4 bytes | |||
|
|
319 | #if(b''==temp): | |||
|
|
320 | # self.setNextFile() | |||
|
|
321 | # self.flag_same_file=0 | |||
|
|
322 | ii=0 | |||
|
|
323 | #print("kabxys.shape ",kabxys.shape) | |||
|
|
324 | #print(kabxys) | |||
|
|
325 | #print("fpos3: ",self.fp.tell()) | |||
|
|
326 | for l in range(self.header[17][0]): #lag | |||
|
|
327 | #print("fpos3: ",self.fp.tell()) | |||
|
|
328 | for fl in range(2): # unflip and flip | |||
|
|
329 | for k in range(self.header[15][0]): #RANGE | |||
|
|
330 | #print("fpos3: ",self.fp.tell()) | |||
|
|
331 | self.final_cross_products[ind][k,l,fl]=struct.unpack('f', temp[ii:ii+4])[0] | |||
|
|
332 | ii=ii+4 | |||
|
|
333 | #print("fpos2: ",self.fp.tell()) | |||
|
|
334 | ||||
|
|
335 | ||||
|
|
336 | ||||
|
|
337 | def read_noise(self): | |||
|
|
338 | ||||
|
|
339 | temp=self.fp.read(self.header[2][0]*4) #*4 bytes self.header[2][0] | |||
|
|
340 | for ii in range(self.header[2][0]): #self.header[2][0] | |||
|
|
341 | self.noise[ii]=struct.unpack('f', temp[ii*4:(ii+1)*4])[0] | |||
|
|
342 | ||||
|
|
343 | #print("fpos5: ",self.fp.tell()) | |||
|
|
344 | ||||
|
|
345 | ||||
|
|
346 | ||||
|
|
347 | def set_output(self): | |||
|
|
348 | ''' | |||
|
|
349 | Storing data from buffer to dataOut object | |||
|
|
350 | ''' | |||
|
|
351 | #print("fpos2: ",self.fp.tell()) | |||
|
|
352 | ##self.dataOut.header = self.header | |||
|
|
353 | #this is put by hand because it isn't saved in the header | |||
|
|
354 | if self.experiment=='DP': | |||
|
|
355 | self.dataOut.NRANGE=0 | |||
|
|
356 | self.dataOut.NSCAN=132 | |||
|
|
357 | self.dataOut.heightList=self.header[10][0]*(numpy.arange(self.header[15][0])) | |||
|
|
358 | elif self.experiment=='HP': | |||
|
|
359 | self.dataOut.output_LP=self.output_LP_real+1.j*self.output_LP_imag | |||
|
|
360 | self.dataOut.NRANGE=200 | |||
|
|
361 | self.dataOut.NSCAN=128 | |||
|
|
362 | self.dataOut.heightList=self.header[10][0]*(numpy.arange(90)) #NEEEDS TO BE GENERALIZED | |||
|
|
363 | ######################################### | |||
|
|
364 | #print(self.dataOut.output_LP[1,1,1]) | |||
|
|
365 | self.dataOut.MAXNRANGENDT=self.header[3][0] | |||
|
|
366 | self.dataOut.NDP=self.header[15][0] | |||
|
|
367 | self.dataOut.DPL=self.header[17][0] | |||
|
|
368 | self.dataOut.DH=self.header[10][0] | |||
|
|
369 | self.dataOut.NAVG=self.header[7][0] | |||
|
|
370 | self.dataOut.H0=self.header[9][0] | |||
|
|
371 | self.dataOut.NR=self.header[2][0] | |||
|
|
372 | self.dataOut.NLAG=self.header[18][0] | |||
|
|
373 | #self.dataOut.tmpx=self.tmpx | |||
|
|
374 | #self.dataOut.timeZone = 5 | |||
|
|
375 | #self.dataOut.final_cross_products=self.final_cross_products | |||
|
|
376 | self.dataOut.kax=self.kax | |||
|
|
377 | #print(self.dataOut.kax[1,1,1]) | |||
|
|
378 | self.dataOut.kay=self.kay | |||
|
|
379 | self.dataOut.kbx=self.kbx | |||
|
|
380 | self.dataOut.kby=self.kby | |||
|
|
381 | self.dataOut.kax2=self.kax2 | |||
|
|
382 | self.dataOut.kay2=self.kay2 | |||
|
|
383 | self.dataOut.kbx2=self.kbx2 | |||
|
|
384 | self.dataOut.kby2=self.kby2 | |||
|
|
385 | self.dataOut.kaxbx=self.kaxbx | |||
|
|
386 | self.dataOut.kaxby=self.kaxby | |||
|
|
387 | self.dataOut.kaybx=self.kaybx | |||
|
|
388 | self.dataOut.kayby=self.kayby | |||
|
|
389 | self.dataOut.kaxay=self.kaxay | |||
|
|
390 | self.dataOut.kbxby=self.kbxby | |||
|
|
391 | self.dataOut.noise_final=self.noise | |||
|
|
392 | #print("NOISE",self.noise) | |||
|
|
393 | ||||
|
|
394 | ||||
|
|
395 | self.dataOut.useLocalTime=True | |||
|
|
396 | ||||
|
|
397 | #self.dataOut.experiment=self.experiment | |||
|
|
398 | #print(self.datatime) | |||
|
|
399 | #print(self.dataOut.datatime) | |||
|
|
400 | ||||
|
|
401 | ||||
|
|
402 | #self.dataOut.utctime = (self.datatime - datetime.datetime(1970, 1, 1)).total_seconds() | |||
|
|
403 | #self.dataOut.utctimeInit = self.dataOut.utctime | |||
|
|
404 | ||||
|
|
405 | ||||
|
|
406 | ||||
|
|
407 | self.dataOut.lt=self.datatime.hour | |||
|
|
408 | ||||
|
|
409 | ||||
|
|
410 | #print(RadarControllerHeader().ippSeconds) | |||
|
|
411 | #print(RadarControllerHeader().ipp) | |||
|
|
412 | #self.dataOut.utctime=time.gmtime(self.header[4][0])- datetime.datetime(1970, 1, 1) | |||
|
|
413 | #self.dataOut.utctime=self.dataOut.utctime.total_seconds() | |||
|
|
414 | #time1 = self.header[4][0] # header.time1 | |||
|
|
415 | #print("time1: ",time1) | |||
|
|
416 | #print(self.header[4][0]) | |||
|
|
417 | #date = time.ctime(time1) | |||
|
|
418 | #print("DADSADA",time.strptime(date)) | |||
|
|
419 | #print("date_before: ",date) | |||
|
|
420 | #bd_time=time.gmtime(time1) | |||
|
|
421 | #print(time.mktime(bd_time)) | |||
|
|
422 | #self.dataOut.utctime=time.mktime(bd_time) | |||
|
|
423 | self.dataOut.utctime = self.header[4][0] | |||
|
|
424 | #self.dataOut.datatime=a | |||
|
|
425 | #print(datetime.datetime.utcfromtimestamp(self.dataOut.utctime)) | |||
|
|
426 | #self.dataOut.TimeBlockDate=self.datatime.ctime() | |||
|
|
427 | self.dataOut.TimeBlockSeconds=time.mktime(time.strptime(self.dataOut.datatime.ctime())) | |||
|
|
428 | ||||
|
|
429 | #self.dataOut.heightList = self.ranges | |||
|
|
430 | #self.dataOut.utctime = (self.datatime - datetime.datetime(1970, 1, 1)).total_seconds() | |||
|
|
431 | #self.dataOut.utctimeInit = self.dataOut.utctime | |||
|
|
432 | #self.dataOut.paramInterval = min(self.intervals) | |||
|
|
433 | #self.dataOut.useLocalTime = False | |||
|
|
434 | self.dataOut.flagNoData = False | |||
|
|
435 | self.dataOut.flagDiscontinuousBlock = self.flagDiscontinuousBlock | |||
|
|
436 | #print(self.dataOut.channelIndexList) | |||
|
|
437 | self.dataOut.channelList=list(range(0,self.header[2][0])) | |||
|
|
438 | #print(self.dataOut.channelList) | |||
|
|
439 | #print(self.datatime) | |||
|
|
440 | #print(self.dataOut.final_cross_products[0]) | |||
|
|
441 | ||||
|
|
442 | ||||
|
|
443 | #self.dataOut.heightList=self.header[10][0]*(numpy.arange(self.header[15][0])) | |||
|
|
444 | ||||
|
|
445 | #print(numpy.shape(self.dataOut.heightList)) | |||
|
|
446 | ||||
|
|
447 | ||||
|
|
448 | def getData(self): | |||
|
|
449 | ''' | |||
|
|
450 | Storing data from databuffer to dataOut object | |||
|
|
451 | ''' | |||
|
|
452 | ||||
|
|
453 | if not self.readNextBlock(): | |||
|
|
454 | self.dataOut.flagNoData = True | |||
|
|
455 | return 0 | |||
|
|
456 | ||||
|
|
457 | self.set_output() | |||
|
|
458 | ||||
|
|
459 | return 1 | |||
|
|
460 | ||||
|
|
461 | def run(self, **kwargs): | |||
|
|
462 | ||||
|
|
463 | if not(self.isConfig): | |||
|
|
464 | self.setup(**kwargs) | |||
|
|
465 | self.isConfig = True | |||
|
|
466 | #print("fpos1: ",self.fp.tell()) | |||
|
|
467 | self.getData() | |||
|
|
468 | ||||
|
|
469 | return | |||
|
|
470 | ||||
|
|
471 | @MPDecorator | |||
|
|
472 | class DatWriter(Operation): | |||
|
|
473 | ||||
|
|
474 | ||||
|
|
475 | def __init__(self): | |||
|
|
476 | ||||
|
|
477 | Operation.__init__(self) | |||
|
|
478 | #self.dataOut = Voltage() | |||
|
|
479 | self.counter = 0 | |||
|
|
480 | self.path = None | |||
|
|
481 | self.fp = None | |||
|
|
482 | return | |||
|
|
483 | #self.ext= '.dat' | |||
|
|
484 | ||||
|
|
485 | def run(self, dataOut, path, format='dat', experiment=None, **kwargs): | |||
|
|
486 | print(dataOut.flagNoData) | |||
|
|
487 | print(dataOut.datatime.ctime()) | |||
|
|
488 | print(dataOut.TimeBlockDate) | |||
|
|
489 | input() | |||
|
|
490 | #if dataOut.flag_save: | |||
|
|
491 | self.experiment=experiment | |||
|
|
492 | self.path=path | |||
|
|
493 | if self.experiment=='DP': | |||
|
|
494 | dataOut.header[1][0]=81864 | |||
|
|
495 | elif self.experiment=='HP': | |||
|
|
496 | dataOut.header[1][0]=185504#173216 | |||
|
|
497 | #dataOut.header[1][0]=bufsize | |||
|
|
498 | self.dataOut = dataOut | |||
|
|
499 | #print(self.dataOut.nint) | |||
|
|
500 | #self.bufsize=bufsize | |||
|
|
501 | if format == 'dat': | |||
|
|
502 | self.ext = '.dat' | |||
|
|
503 | if format == 'out': | |||
|
|
504 | self.ext = '.out' | |||
|
|
505 | self.putData() | |||
|
|
506 | ||||
|
|
507 | return | |||
|
|
508 | ||||
|
|
509 | ||||
|
|
510 | ||||
|
|
511 | def setFile(self): | |||
|
|
512 | ''' | |||
|
|
513 | Create new out file object | |||
|
|
514 | ''' | |||
|
|
515 | ||||
|
|
516 | #self.dataOut.TimeBlockSeconds=time.mktime(time.strptime(self.dataOut.TimeBlockDate)) | |||
|
|
517 | date = datetime.datetime.fromtimestamp(self.dataOut.TimeBlockSeconds) | |||
|
|
518 | ||||
|
|
519 | #print("date",date) | |||
|
|
520 | ||||
|
|
521 | filename = '{}{}{}'.format('jro', | |||
|
|
522 | date.strftime('%Y%m%d_%H%M%S'), | |||
|
|
523 | self.ext) | |||
|
|
524 | #print(filename) | |||
|
|
525 | #print(self.path) | |||
|
|
526 | ||||
|
|
527 | self.fullname = os.path.join(self.path, filename) | |||
|
|
528 | ||||
|
|
529 | if os.path.isfile(self.fullname) : | |||
|
|
530 | log.warning( | |||
|
|
531 | 'Destination file {} already exists, previous file deleted.'.format( | |||
|
|
532 | self.fullname), | |||
|
|
533 | 'DatWriter') | |||
|
|
534 | os.remove(self.fullname) | |||
|
|
535 | ||||
|
|
536 | try: | |||
|
|
537 | log.success( | |||
|
|
538 | 'Creating file: {}'.format(self.fullname), | |||
|
|
539 | 'DatWriter') | |||
|
|
540 | if not os.path.exists(self.path): | |||
|
|
541 | os.makedirs(self.path) | |||
|
|
542 | #self.fp = madrigal.cedar.MadrigalCedarFile(self.fullname, True) | |||
|
|
543 | self.fp = open(self.fullname,'wb') | |||
|
|
544 | ||||
|
|
545 | except ValueError as e: | |||
|
|
546 | log.error( | |||
|
|
547 | 'Impossible to create *.out file', | |||
|
|
548 | 'DatWriter') | |||
|
|
549 | return | |||
|
|
550 | ||||
|
|
551 | return 1 | |||
|
|
552 | ||||
|
|
553 | def writeBlock(self): | |||
|
|
554 | ||||
|
|
555 | #self.dataOut.paramInterval=2 | |||
|
|
556 | #startTime = datetime.datetime.utcfromtimestamp(self.dataOut.utctime) | |||
|
|
557 | #print(startTime) | |||
|
|
558 | #endTime = startTime + datetime.timedelta(seconds=self.dataOut.paramInterval) | |||
|
|
559 | ||||
|
|
560 | self.dataOut.header[0].astype('int32').tofile(self.fp) | |||
|
|
561 | self.dataOut.header[1].astype('int32').tofile(self.fp) | |||
|
|
562 | self.dataOut.header[2].astype('int32').tofile(self.fp) | |||
|
|
563 | self.dataOut.header[3].astype('int32').tofile(self.fp) | |||
|
|
564 | self.dataOut.header[4].astype('uint64').tofile(self.fp) | |||
|
|
565 | self.dataOut.header[5].astype('uint64').tofile(self.fp) | |||
|
|
566 | self.dataOut.header[6].astype('int32').tofile(self.fp) | |||
|
|
567 | self.dataOut.header[7].astype('int32').tofile(self.fp) | |||
|
|
568 | #print(dataOut.header[7]) | |||
|
|
569 | self.dataOut.header[8].astype('int8').tofile(self.fp) | |||
|
|
570 | self.dataOut.header[9].astype('float32').tofile(self.fp) | |||
|
|
571 | self.dataOut.header[10].astype('float32').tofile(self.fp) | |||
|
|
572 | self.dataOut.header[11].astype('float32').tofile(self.fp) | |||
|
|
573 | self.dataOut.header[12].astype('int32').tofile(self.fp) | |||
|
|
574 | self.dataOut.header[13].astype('int32').tofile(self.fp) | |||
|
|
575 | self.dataOut.header[14].astype('int32').tofile(self.fp) | |||
|
|
576 | self.dataOut.header[15].astype('int32').tofile(self.fp) | |||
|
|
577 | self.dataOut.header[16].astype('uint64').tofile(self.fp) | |||
|
|
578 | self.dataOut.header[17].astype('int32').tofile(self.fp) | |||
|
|
579 | self.dataOut.header[18].astype('int32').tofile(self.fp) | |||
|
|
580 | self.dataOut.header[19].astype('int32').tofile(self.fp) | |||
|
|
581 | self.dataOut.header[20].astype('float32').tofile(self.fp) | |||
|
|
582 | self.dataOut.header[21].astype('uint64').tofile(self.fp) | |||
|
|
583 | self.dataOut.header[22].astype('uint64').tofile(self.fp) | |||
|
|
584 | self.dataOut.header[23].astype('float32').tofile(self.fp) | |||
|
|
585 | self.dataOut.header[24].astype('float32').tofile(self.fp) | |||
|
|
586 | self.dataOut.header[25].astype('float32').tofile(self.fp) | |||
|
|
587 | self.dataOut.header[26].astype('float32').tofile(self.fp) | |||
|
|
588 | self.dataOut.header[27].astype('int32').tofile(self.fp) | |||
|
|
589 | self.dataOut.header[28].astype('int32').tofile(self.fp) | |||
|
|
590 | self.dataOut.header[29].astype('int32').tofile(self.fp) | |||
|
|
591 | self.dataOut.header[30].astype('int32').tofile(self.fp) | |||
|
|
592 | self.dataOut.header[31].astype('int32').tofile(self.fp) | |||
|
|
593 | #print("tell before 1 ",self.fp.tell()) | |||
|
|
594 | #input() | |||
|
|
595 | ||||
|
|
596 | if self.experiment=="HP": | |||
|
|
597 | #print("INSIDE") | |||
|
|
598 | #tmp=numpy.zeros(1,dtype='complex64') | |||
|
|
599 | #print("tmp ",tmp) | |||
|
|
600 | #input() | |||
|
|
601 | #print(dataOut.NLAG) | |||
|
|
602 | #print(dataOut.NR) | |||
|
|
603 | #print(dataOut.NRANGE) | |||
|
|
604 | for l in range(self.dataOut.NLAG): #lag | |||
|
|
605 | for r in range(self.dataOut.NR): # unflip and flip | |||
|
|
606 | for k in range(self.dataOut.NRANGE): #RANGE | |||
|
|
607 | self.dataOut.output_LP.real[l,k,r].astype('float32').tofile(self.fp) | |||
|
|
608 | self.dataOut.output_LP.imag[l,k,r].astype('float32').tofile(self.fp) | |||
|
|
609 | ||||
|
|
610 | ||||
|
|
611 | #print("tell before 2 ",self.outputfile.tell()) | |||
|
|
612 | ||||
|
|
613 | ||||
|
|
614 | ||||
|
|
615 | ||||
|
|
616 | ||||
|
|
617 | #print(self.dataOut.output_LP[1,1,1]) | |||
|
|
618 | ||||
|
|
619 | #print(self.dataOut.kax) | |||
|
|
620 | final_cross_products=[self.dataOut.kax,self.dataOut.kay,self.dataOut.kbx,self.dataOut.kby, | |||
|
|
621 | self.dataOut.kax2,self.dataOut.kay2,self.dataOut.kbx2,self.dataOut.kby2, | |||
|
|
622 | self.dataOut.kaxbx,self.dataOut.kaxby,self.dataOut.kaybx,self.dataOut.kayby, | |||
|
|
623 | self.dataOut.kaxay,self.dataOut.kbxby] | |||
|
|
624 | ||||
|
|
625 | #print(self.dataOut.kax) | |||
|
|
626 | #print("tell before crossp saving ",self.outputfile.tell()) | |||
|
|
627 | for kabxys in final_cross_products: | |||
|
|
628 | ||||
|
|
629 | for l in range(self.dataOut.DPL): #lag | |||
|
|
630 | for fl in range(2): # unflip and flip | |||
|
|
631 | for k in range(self.dataOut.NDT): #RANGE | |||
|
|
632 | kabxys[k,l,fl].astype('float32').tofile(self.fp) | |||
|
|
633 | ||||
|
|
634 | ||||
|
|
635 | #print("tell before noise saving ",self.outputfile.tell()) | |||
|
|
636 | ||||
|
|
637 | ||||
|
|
638 | for nch in range(self.dataOut.NR): | |||
|
|
639 | self.dataOut.noise_final[nch].astype('float32').tofile(self.fp) | |||
|
|
640 | ||||
|
|
641 | #print("tell before noise saving ",self.fp.tell()) | |||
|
|
642 | #input() | |||
|
|
643 | ||||
|
|
644 | ||||
|
|
645 | ||||
|
|
646 | ||||
|
|
647 | log.log( | |||
|
|
648 | 'Writing {} blocks'.format( | |||
|
|
649 | self.counter+1), | |||
|
|
650 | 'DatWriter') | |||
|
|
651 | ||||
|
|
652 | ||||
|
|
653 | ||||
|
|
654 | ||||
|
|
655 | ||||
|
|
656 | ||||
|
|
657 | def putData(self): | |||
|
|
658 | #print("flagNoData",self.dataOut.flagNoData) | |||
|
|
659 | #print("flagDiscontinuousBlock",self.dataOut.flagDiscontinuousBlock) | |||
|
|
660 | #print(self.dataOut.flagNoData) | |||
|
|
661 | ||||
|
|
662 | if self.dataOut.flagNoData: | |||
|
|
663 | return 0 | |||
|
|
664 | ||||
|
|
665 | if self.dataOut.flagDiscontinuousBlock: | |||
|
|
666 | ||||
|
|
667 | self.counter = 0 | |||
|
|
668 | ||||
|
|
669 | if self.counter == 0: | |||
|
|
670 | self.setFile() | |||
|
|
671 | #if self.experiment=="HP": | |||
|
|
672 | #if self.dataOut.debris_activated==0: | |||
|
|
673 | #self.writeBlock() | |||
|
|
674 | #self.counter += 1 | |||
|
|
675 | #else: | |||
|
|
676 | self.writeBlock() | |||
|
|
677 | self.counter += 1 | |||
|
|
678 | ||||
|
|
679 | def close(self): | |||
|
|
680 | ||||
|
|
681 | if self.counter > 0: | |||
|
|
682 | self.fp.close() | |||
|
|
683 | log.success('Closing file {}'.format(self.fullname), 'DatWriter') | |||
| 1 | NO CONTENT: new file 100644 |
|
NO CONTENT: new file 100644 | ||
| The requested commit or file is too big and content was truncated. Show full diff | |||||
| @@ -1,1069 +1,1169 | |||||
| 1 | # Copyright (c) 2012-2020 Jicamarca Radio Observatory |
|
1 | # Copyright (c) 2012-2020 Jicamarca Radio Observatory | |
| 2 | # All rights reserved. |
|
2 | # All rights reserved. | |
| 3 | # |
|
3 | # | |
| 4 | # Distributed under the terms of the BSD 3-clause license. |
|
4 | # Distributed under the terms of the BSD 3-clause license. | |
| 5 | """Definition of diferent Data objects for different types of data |
|
5 | """Definition of diferent Data objects for different types of data | |
| 6 |
|
6 | |||
| 7 | Here you will find the diferent data objects for the different types |
|
7 | Here you will find the diferent data objects for the different types | |
| 8 | of data, this data objects must be used as dataIn or dataOut objects in |
|
8 | of data, this data objects must be used as dataIn or dataOut objects in | |
| 9 | processing units and operations. Currently the supported data objects are: |
|
9 | processing units and operations. Currently the supported data objects are: | |
| 10 | Voltage, Spectra, SpectraHeis, Fits, Correlation and Parameters |
|
10 | Voltage, Spectra, SpectraHeis, Fits, Correlation and Parameters | |
| 11 | """ |
|
11 | """ | |
| 12 |
|
12 | |||
| 13 | import copy |
|
13 | import copy | |
| 14 | import numpy |
|
14 | import numpy | |
| 15 | import datetime |
|
15 | import datetime | |
| 16 | import json |
|
16 | import json | |
| 17 |
|
17 | |||
| 18 | import schainpy.admin |
|
18 | import schainpy.admin | |
| 19 | from schainpy.utils import log |
|
19 | from schainpy.utils import log | |
| 20 | from .jroheaderIO import SystemHeader, RadarControllerHeader |
|
20 | from .jroheaderIO import SystemHeader, RadarControllerHeader | |
| 21 | from schainpy.model.data import _noise |
|
21 | from schainpy.model.data import _noise | |
| 22 |
|
22 | |||
| 23 |
|
23 | |||
| 24 | def getNumpyDtype(dataTypeCode): |
|
24 | def getNumpyDtype(dataTypeCode): | |
| 25 |
|
25 | |||
| 26 | if dataTypeCode == 0: |
|
26 | if dataTypeCode == 0: | |
| 27 | numpyDtype = numpy.dtype([('real', '<i1'), ('imag', '<i1')]) |
|
27 | numpyDtype = numpy.dtype([('real', '<i1'), ('imag', '<i1')]) | |
| 28 | elif dataTypeCode == 1: |
|
28 | elif dataTypeCode == 1: | |
| 29 | numpyDtype = numpy.dtype([('real', '<i2'), ('imag', '<i2')]) |
|
29 | numpyDtype = numpy.dtype([('real', '<i2'), ('imag', '<i2')]) | |
| 30 | elif dataTypeCode == 2: |
|
30 | elif dataTypeCode == 2: | |
| 31 | numpyDtype = numpy.dtype([('real', '<i4'), ('imag', '<i4')]) |
|
31 | numpyDtype = numpy.dtype([('real', '<i4'), ('imag', '<i4')]) | |
| 32 | elif dataTypeCode == 3: |
|
32 | elif dataTypeCode == 3: | |
| 33 | numpyDtype = numpy.dtype([('real', '<i8'), ('imag', '<i8')]) |
|
33 | numpyDtype = numpy.dtype([('real', '<i8'), ('imag', '<i8')]) | |
| 34 | elif dataTypeCode == 4: |
|
34 | elif dataTypeCode == 4: | |
| 35 | numpyDtype = numpy.dtype([('real', '<f4'), ('imag', '<f4')]) |
|
35 | numpyDtype = numpy.dtype([('real', '<f4'), ('imag', '<f4')]) | |
| 36 | elif dataTypeCode == 5: |
|
36 | elif dataTypeCode == 5: | |
| 37 | numpyDtype = numpy.dtype([('real', '<f8'), ('imag', '<f8')]) |
|
37 | numpyDtype = numpy.dtype([('real', '<f8'), ('imag', '<f8')]) | |
| 38 | else: |
|
38 | else: | |
| 39 | raise ValueError('dataTypeCode was not defined') |
|
39 | raise ValueError('dataTypeCode was not defined') | |
| 40 |
|
40 | |||
| 41 | return numpyDtype |
|
41 | return numpyDtype | |
| 42 |
|
42 | |||
| 43 |
|
43 | |||
| 44 | def getDataTypeCode(numpyDtype): |
|
44 | def getDataTypeCode(numpyDtype): | |
| 45 |
|
45 | |||
| 46 | if numpyDtype == numpy.dtype([('real', '<i1'), ('imag', '<i1')]): |
|
46 | if numpyDtype == numpy.dtype([('real', '<i1'), ('imag', '<i1')]): | |
| 47 | datatype = 0 |
|
47 | datatype = 0 | |
| 48 | elif numpyDtype == numpy.dtype([('real', '<i2'), ('imag', '<i2')]): |
|
48 | elif numpyDtype == numpy.dtype([('real', '<i2'), ('imag', '<i2')]): | |
| 49 | datatype = 1 |
|
49 | datatype = 1 | |
| 50 | elif numpyDtype == numpy.dtype([('real', '<i4'), ('imag', '<i4')]): |
|
50 | elif numpyDtype == numpy.dtype([('real', '<i4'), ('imag', '<i4')]): | |
| 51 | datatype = 2 |
|
51 | datatype = 2 | |
| 52 | elif numpyDtype == numpy.dtype([('real', '<i8'), ('imag', '<i8')]): |
|
52 | elif numpyDtype == numpy.dtype([('real', '<i8'), ('imag', '<i8')]): | |
| 53 | datatype = 3 |
|
53 | datatype = 3 | |
| 54 | elif numpyDtype == numpy.dtype([('real', '<f4'), ('imag', '<f4')]): |
|
54 | elif numpyDtype == numpy.dtype([('real', '<f4'), ('imag', '<f4')]): | |
| 55 | datatype = 4 |
|
55 | datatype = 4 | |
| 56 | elif numpyDtype == numpy.dtype([('real', '<f8'), ('imag', '<f8')]): |
|
56 | elif numpyDtype == numpy.dtype([('real', '<f8'), ('imag', '<f8')]): | |
| 57 | datatype = 5 |
|
57 | datatype = 5 | |
| 58 | else: |
|
58 | else: | |
| 59 | datatype = None |
|
59 | datatype = None | |
| 60 |
|
60 | |||
| 61 | return datatype |
|
61 | return datatype | |
| 62 |
|
62 | |||
| 63 |
|
63 | |||
| 64 | def hildebrand_sekhon(data, navg): |
|
64 | def hildebrand_sekhon(data, navg): | |
| 65 | """ |
|
65 | """ | |
| 66 | This method is for the objective determination of the noise level in Doppler spectra. This |
|
66 | This method is for the objective determination of the noise level in Doppler spectra. This | |
| 67 | implementation technique is based on the fact that the standard deviation of the spectral |
|
67 | implementation technique is based on the fact that the standard deviation of the spectral | |
| 68 | densities is equal to the mean spectral density for white Gaussian noise |
|
68 | densities is equal to the mean spectral density for white Gaussian noise | |
| 69 |
|
69 | |||
| 70 | Inputs: |
|
70 | Inputs: | |
| 71 | Data : heights |
|
71 | Data : heights | |
| 72 | navg : numbers of averages |
|
72 | navg : numbers of averages | |
| 73 |
|
73 | |||
| 74 | Return: |
|
74 | Return: | |
| 75 | mean : noise's level |
|
75 | mean : noise's level | |
| 76 | """ |
|
76 | """ | |
| 77 |
|
77 | |||
| 78 | sortdata = numpy.sort(data, axis=None) |
|
78 | sortdata = numpy.sort(data, axis=None) | |
|
|
79 | #print(numpy.shape(data)) | |||
|
|
80 | #exit() | |||
| 79 | ''' |
|
81 | ''' | |
| 80 | lenOfData = len(sortdata) |
|
82 | lenOfData = len(sortdata) | |
| 81 | nums_min = lenOfData*0.2 |
|
83 | nums_min = lenOfData*0.2 | |
| 82 |
|
84 | |||
| 83 | if nums_min <= 5: |
|
85 | if nums_min <= 5: | |
| 84 |
|
86 | |||
| 85 | nums_min = 5 |
|
87 | nums_min = 5 | |
| 86 |
|
88 | |||
| 87 | sump = 0. |
|
89 | sump = 0. | |
| 88 | sumq = 0. |
|
90 | sumq = 0. | |
| 89 |
|
91 | |||
| 90 | j = 0 |
|
92 | j = 0 | |
| 91 | cont = 1 |
|
93 | cont = 1 | |
| 92 |
|
94 | |||
| 93 | while((cont == 1)and(j < lenOfData)): |
|
95 | while((cont == 1)and(j < lenOfData)): | |
| 94 |
|
96 | |||
| 95 | sump += sortdata[j] |
|
97 | sump += sortdata[j] | |
| 96 | sumq += sortdata[j]**2 |
|
98 | sumq += sortdata[j]**2 | |
| 97 |
|
99 | |||
| 98 | if j > nums_min: |
|
100 | if j > nums_min: | |
| 99 | rtest = float(j)/(j-1) + 1.0/navg |
|
101 | rtest = float(j)/(j-1) + 1.0/navg | |
| 100 | if ((sumq*j) > (rtest*sump**2)): |
|
102 | if ((sumq*j) > (rtest*sump**2)): | |
| 101 | j = j - 1 |
|
103 | j = j - 1 | |
| 102 | sump = sump - sortdata[j] |
|
104 | sump = sump - sortdata[j] | |
| 103 | sumq = sumq - sortdata[j]**2 |
|
105 | sumq = sumq - sortdata[j]**2 | |
| 104 | cont = 0 |
|
106 | cont = 0 | |
| 105 |
|
107 | |||
| 106 | j += 1 |
|
108 | j += 1 | |
| 107 |
|
109 | |||
| 108 | lnoise = sump / j |
|
110 | lnoise = sump / j | |
| 109 | ''' |
|
111 | ''' | |
| 110 | return _noise.hildebrand_sekhon(sortdata, navg) |
|
112 | return _noise.hildebrand_sekhon(sortdata, navg) | |
| 111 |
|
113 | |||
| 112 |
|
114 | |||
| 113 | class Beam: |
|
115 | class Beam: | |
| 114 |
|
116 | |||
| 115 | def __init__(self): |
|
117 | def __init__(self): | |
| 116 | self.codeList = [] |
|
118 | self.codeList = [] | |
| 117 | self.azimuthList = [] |
|
119 | self.azimuthList = [] | |
| 118 | self.zenithList = [] |
|
120 | self.zenithList = [] | |
| 119 |
|
121 | |||
| 120 |
|
122 | |||
| 121 | class GenericData(object): |
|
123 | class GenericData(object): | |
| 122 |
|
124 | |||
| 123 | flagNoData = True |
|
125 | flagNoData = True | |
| 124 |
|
126 | |||
| 125 | def copy(self, inputObj=None): |
|
127 | def copy(self, inputObj=None): | |
| 126 |
|
128 | |||
| 127 | if inputObj == None: |
|
129 | if inputObj == None: | |
| 128 | return copy.deepcopy(self) |
|
130 | return copy.deepcopy(self) | |
| 129 |
|
131 | |||
| 130 | for key in list(inputObj.__dict__.keys()): |
|
132 | for key in list(inputObj.__dict__.keys()): | |
| 131 |
|
133 | |||
| 132 | attribute = inputObj.__dict__[key] |
|
134 | attribute = inputObj.__dict__[key] | |
| 133 |
|
135 | |||
| 134 | # If this attribute is a tuple or list |
|
136 | # If this attribute is a tuple or list | |
| 135 | if type(inputObj.__dict__[key]) in (tuple, list): |
|
137 | if type(inputObj.__dict__[key]) in (tuple, list): | |
| 136 | self.__dict__[key] = attribute[:] |
|
138 | self.__dict__[key] = attribute[:] | |
| 137 | continue |
|
139 | continue | |
| 138 |
|
140 | |||
| 139 | # If this attribute is another object or instance |
|
141 | # If this attribute is another object or instance | |
| 140 | if hasattr(attribute, '__dict__'): |
|
142 | if hasattr(attribute, '__dict__'): | |
| 141 | self.__dict__[key] = attribute.copy() |
|
143 | self.__dict__[key] = attribute.copy() | |
| 142 | continue |
|
144 | continue | |
| 143 |
|
145 | |||
| 144 | self.__dict__[key] = inputObj.__dict__[key] |
|
146 | self.__dict__[key] = inputObj.__dict__[key] | |
| 145 |
|
147 | |||
| 146 | def deepcopy(self): |
|
148 | def deepcopy(self): | |
| 147 |
|
149 | |||
| 148 | return copy.deepcopy(self) |
|
150 | return copy.deepcopy(self) | |
| 149 |
|
151 | |||
| 150 | def isEmpty(self): |
|
152 | def isEmpty(self): | |
| 151 |
|
153 | |||
| 152 | return self.flagNoData |
|
154 | return self.flagNoData | |
| 153 |
|
155 | |||
| 154 | def isReady(self): |
|
156 | def isReady(self): | |
| 155 |
|
157 | |||
| 156 | return not self.flagNoData |
|
158 | return not self.flagNoData | |
| 157 |
|
159 | |||
| 158 |
|
160 | |||
| 159 | class JROData(GenericData): |
|
161 | class JROData(GenericData): | |
| 160 |
|
162 | |||
| 161 | systemHeaderObj = SystemHeader() |
|
163 | systemHeaderObj = SystemHeader() | |
| 162 | radarControllerHeaderObj = RadarControllerHeader() |
|
164 | radarControllerHeaderObj = RadarControllerHeader() | |
| 163 | type = None |
|
165 | type = None | |
| 164 | datatype = None # dtype but in string |
|
166 | datatype = None # dtype but in string | |
| 165 | nProfiles = None |
|
167 | nProfiles = None | |
| 166 | heightList = None |
|
168 | heightList = None | |
| 167 | channelList = None |
|
169 | channelList = None | |
| 168 | flagDiscontinuousBlock = False |
|
170 | flagDiscontinuousBlock = False | |
| 169 | useLocalTime = False |
|
171 | useLocalTime = False | |
| 170 | utctime = None |
|
172 | utctime = None | |
| 171 | timeZone = None |
|
173 | timeZone = None | |
| 172 | dstFlag = None |
|
174 | dstFlag = None | |
| 173 | errorCount = None |
|
175 | errorCount = None | |
| 174 | blocksize = None |
|
176 | blocksize = None | |
| 175 | flagDecodeData = False # asumo q la data no esta decodificada |
|
177 | flagDecodeData = False # asumo q la data no esta decodificada | |
| 176 | flagDeflipData = False # asumo q la data no esta sin flip |
|
178 | flagDeflipData = False # asumo q la data no esta sin flip | |
| 177 | flagShiftFFT = False |
|
179 | flagShiftFFT = False | |
| 178 | nCohInt = None |
|
180 | nCohInt = None | |
| 179 | windowOfFilter = 1 |
|
181 | windowOfFilter = 1 | |
| 180 | C = 3e8 |
|
182 | C = 3e8 | |
| 181 | frequency = 49.92e6 |
|
183 | frequency = 49.92e6 | |
| 182 | realtime = False |
|
184 | realtime = False | |
| 183 | beacon_heiIndexList = None |
|
185 | beacon_heiIndexList = None | |
| 184 | last_block = None |
|
186 | last_block = None | |
| 185 | blocknow = None |
|
187 | blocknow = None | |
| 186 | azimuth = None |
|
188 | azimuth = None | |
| 187 | zenith = None |
|
189 | zenith = None | |
| 188 | beam = Beam() |
|
190 | beam = Beam() | |
| 189 | profileIndex = None |
|
191 | profileIndex = None | |
| 190 | error = None |
|
192 | error = None | |
| 191 | data = None |
|
193 | data = None | |
| 192 | nmodes = None |
|
194 | nmodes = None | |
| 193 | metadata_list = ['heightList', 'timeZone', 'type'] |
|
195 | metadata_list = ['heightList', 'timeZone', 'type'] | |
| 194 |
|
196 | |||
| 195 | def __str__(self): |
|
197 | def __str__(self): | |
| 196 |
|
198 | |||
| 197 | return '{} - {}'.format(self.type, self.datatime()) |
|
199 | return '{} - {}'.format(self.type, self.datatime()) | |
| 198 |
|
200 | |||
| 199 | def getNoise(self): |
|
201 | def getNoise(self): | |
| 200 |
|
202 | |||
| 201 | raise NotImplementedError |
|
203 | raise NotImplementedError | |
| 202 |
|
204 | |||
| 203 | @property |
|
205 | @property | |
| 204 | def nChannels(self): |
|
206 | def nChannels(self): | |
| 205 |
|
207 | |||
| 206 | return len(self.channelList) |
|
208 | return len(self.channelList) | |
| 207 |
|
209 | |||
| 208 | @property |
|
210 | @property | |
| 209 | def channelIndexList(self): |
|
211 | def channelIndexList(self): | |
| 210 |
|
212 | |||
| 211 | return list(range(self.nChannels)) |
|
213 | return list(range(self.nChannels)) | |
| 212 |
|
214 | |||
| 213 | @property |
|
215 | @property | |
| 214 | def nHeights(self): |
|
216 | def nHeights(self): | |
| 215 |
|
217 | |||
| 216 | return len(self.heightList) |
|
218 | return len(self.heightList) | |
| 217 |
|
219 | |||
| 218 | def getDeltaH(self): |
|
220 | def getDeltaH(self): | |
| 219 |
|
221 | |||
| 220 | return self.heightList[1] - self.heightList[0] |
|
222 | return self.heightList[1] - self.heightList[0] | |
| 221 |
|
223 | |||
| 222 | @property |
|
224 | @property | |
| 223 | def ltctime(self): |
|
225 | def ltctime(self): | |
| 224 |
|
226 | |||
| 225 | if self.useLocalTime: |
|
227 | if self.useLocalTime: | |
| 226 | return self.utctime - self.timeZone * 60 |
|
228 | return self.utctime - self.timeZone * 60 | |
| 227 |
|
229 | |||
| 228 | return self.utctime |
|
230 | return self.utctime | |
| 229 |
|
231 | |||
| 230 | @property |
|
232 | @property | |
| 231 | def datatime(self): |
|
233 | def datatime(self): | |
| 232 |
|
234 | |||
| 233 | datatimeValue = datetime.datetime.utcfromtimestamp(self.ltctime) |
|
235 | datatimeValue = datetime.datetime.utcfromtimestamp(self.ltctime) | |
| 234 | return datatimeValue |
|
236 | return datatimeValue | |
| 235 |
|
237 | |||
| 236 | def getTimeRange(self): |
|
238 | def getTimeRange(self): | |
| 237 |
|
239 | |||
| 238 | datatime = [] |
|
240 | datatime = [] | |
| 239 |
|
241 | |||
| 240 | datatime.append(self.ltctime) |
|
242 | datatime.append(self.ltctime) | |
| 241 | datatime.append(self.ltctime + self.timeInterval + 1) |
|
243 | datatime.append(self.ltctime + self.timeInterval + 1) | |
| 242 |
|
244 | |||
| 243 | datatime = numpy.array(datatime) |
|
245 | datatime = numpy.array(datatime) | |
| 244 |
|
246 | |||
| 245 | return datatime |
|
247 | return datatime | |
| 246 |
|
248 | |||
| 247 | def getFmaxTimeResponse(self): |
|
249 | def getFmaxTimeResponse(self): | |
| 248 |
|
250 | |||
| 249 | period = (10**-6) * self.getDeltaH() / (0.15) |
|
251 | period = (10**-6) * self.getDeltaH() / (0.15) | |
| 250 |
|
252 | |||
| 251 | PRF = 1. / (period * self.nCohInt) |
|
253 | PRF = 1. / (period * self.nCohInt) | |
| 252 |
|
254 | |||
| 253 | fmax = PRF |
|
255 | fmax = PRF | |
| 254 |
|
256 | |||
| 255 | return fmax |
|
257 | return fmax | |
| 256 |
|
258 | |||
| 257 | def getFmax(self): |
|
259 | def getFmax(self): | |
| 258 | PRF = 1. / (self.ippSeconds * self.nCohInt) |
|
260 | PRF = 1. / (self.ippSeconds * self.nCohInt) | |
| 259 |
|
261 | |||
| 260 | fmax = PRF |
|
262 | fmax = PRF | |
| 261 | return fmax |
|
263 | return fmax | |
| 262 |
|
264 | |||
| 263 | def getVmax(self): |
|
265 | def getVmax(self): | |
| 264 |
|
266 | |||
| 265 | _lambda = self.C / self.frequency |
|
267 | _lambda = self.C / self.frequency | |
| 266 |
|
268 | |||
| 267 | vmax = self.getFmax() * _lambda / 2 |
|
269 | vmax = self.getFmax() * _lambda / 2 | |
| 268 |
|
270 | |||
| 269 | return vmax |
|
271 | return vmax | |
| 270 |
|
272 | |||
| 271 | @property |
|
273 | @property | |
| 272 | def ippSeconds(self): |
|
274 | def ippSeconds(self): | |
| 273 | ''' |
|
275 | ''' | |
| 274 | ''' |
|
276 | ''' | |
| 275 | return self.radarControllerHeaderObj.ippSeconds |
|
277 | return self.radarControllerHeaderObj.ippSeconds | |
| 276 |
|
278 | |||
| 277 | @ippSeconds.setter |
|
279 | @ippSeconds.setter | |
| 278 | def ippSeconds(self, ippSeconds): |
|
280 | def ippSeconds(self, ippSeconds): | |
| 279 | ''' |
|
281 | ''' | |
| 280 | ''' |
|
282 | ''' | |
| 281 | self.radarControllerHeaderObj.ippSeconds = ippSeconds |
|
283 | self.radarControllerHeaderObj.ippSeconds = ippSeconds | |
| 282 |
|
284 | |||
| 283 | @property |
|
285 | @property | |
| 284 | def code(self): |
|
286 | def code(self): | |
| 285 | ''' |
|
287 | ''' | |
| 286 | ''' |
|
288 | ''' | |
| 287 | return self.radarControllerHeaderObj.code |
|
289 | return self.radarControllerHeaderObj.code | |
| 288 |
|
290 | |||
| 289 | @code.setter |
|
291 | @code.setter | |
| 290 | def code(self, code): |
|
292 | def code(self, code): | |
| 291 | ''' |
|
293 | ''' | |
| 292 | ''' |
|
294 | ''' | |
| 293 | self.radarControllerHeaderObj.code = code |
|
295 | self.radarControllerHeaderObj.code = code | |
| 294 |
|
296 | |||
| 295 | @property |
|
297 | @property | |
| 296 | def nCode(self): |
|
298 | def nCode(self): | |
| 297 | ''' |
|
299 | ''' | |
| 298 | ''' |
|
300 | ''' | |
| 299 | return self.radarControllerHeaderObj.nCode |
|
301 | return self.radarControllerHeaderObj.nCode | |
| 300 |
|
302 | |||
| 301 | @nCode.setter |
|
303 | @nCode.setter | |
| 302 | def nCode(self, ncode): |
|
304 | def nCode(self, ncode): | |
| 303 | ''' |
|
305 | ''' | |
| 304 | ''' |
|
306 | ''' | |
| 305 | self.radarControllerHeaderObj.nCode = ncode |
|
307 | self.radarControllerHeaderObj.nCode = ncode | |
| 306 |
|
308 | |||
| 307 | @property |
|
309 | @property | |
| 308 | def nBaud(self): |
|
310 | def nBaud(self): | |
| 309 | ''' |
|
311 | ''' | |
| 310 | ''' |
|
312 | ''' | |
| 311 | return self.radarControllerHeaderObj.nBaud |
|
313 | return self.radarControllerHeaderObj.nBaud | |
| 312 |
|
314 | |||
| 313 | @nBaud.setter |
|
315 | @nBaud.setter | |
| 314 | def nBaud(self, nbaud): |
|
316 | def nBaud(self, nbaud): | |
| 315 | ''' |
|
317 | ''' | |
| 316 | ''' |
|
318 | ''' | |
| 317 | self.radarControllerHeaderObj.nBaud = nbaud |
|
319 | self.radarControllerHeaderObj.nBaud = nbaud | |
| 318 |
|
320 | |||
| 319 | @property |
|
321 | @property | |
| 320 | def ipp(self): |
|
322 | def ipp(self): | |
| 321 | ''' |
|
323 | ''' | |
| 322 | ''' |
|
324 | ''' | |
| 323 | return self.radarControllerHeaderObj.ipp |
|
325 | return self.radarControllerHeaderObj.ipp | |
| 324 |
|
326 | |||
| 325 | @ipp.setter |
|
327 | @ipp.setter | |
| 326 | def ipp(self, ipp): |
|
328 | def ipp(self, ipp): | |
| 327 | ''' |
|
329 | ''' | |
| 328 | ''' |
|
330 | ''' | |
| 329 | self.radarControllerHeaderObj.ipp = ipp |
|
331 | self.radarControllerHeaderObj.ipp = ipp | |
| 330 |
|
332 | |||
| 331 | @property |
|
333 | @property | |
| 332 | def metadata(self): |
|
334 | def metadata(self): | |
| 333 | ''' |
|
335 | ''' | |
| 334 | ''' |
|
336 | ''' | |
| 335 |
|
337 | |||
| 336 | return {attr: getattr(self, attr) for attr in self.metadata_list} |
|
338 | return {attr: getattr(self, attr) for attr in self.metadata_list} | |
| 337 |
|
339 | |||
| 338 |
|
340 | |||
| 339 | class Voltage(JROData): |
|
341 | class Voltage(JROData): | |
| 340 |
|
342 | |||
| 341 | dataPP_POW = None |
|
343 | dataPP_POW = None | |
| 342 | dataPP_DOP = None |
|
344 | dataPP_DOP = None | |
| 343 | dataPP_WIDTH = None |
|
345 | dataPP_WIDTH = None | |
| 344 | dataPP_SNR = None |
|
346 | dataPP_SNR = None | |
| 345 |
|
347 | |||
| 346 | def __init__(self): |
|
348 | def __init__(self): | |
| 347 | ''' |
|
349 | ''' | |
| 348 | Constructor |
|
350 | Constructor | |
| 349 | ''' |
|
351 | ''' | |
| 350 |
|
352 | |||
| 351 | self.useLocalTime = True |
|
353 | self.useLocalTime = True | |
| 352 | self.radarControllerHeaderObj = RadarControllerHeader() |
|
354 | self.radarControllerHeaderObj = RadarControllerHeader() | |
| 353 | self.systemHeaderObj = SystemHeader() |
|
355 | self.systemHeaderObj = SystemHeader() | |
| 354 | self.type = "Voltage" |
|
356 | self.type = "Voltage" | |
| 355 | self.data = None |
|
357 | self.data = None | |
| 356 | self.nProfiles = None |
|
358 | self.nProfiles = None | |
| 357 | self.heightList = None |
|
359 | self.heightList = None | |
| 358 | self.channelList = None |
|
360 | self.channelList = None | |
| 359 | self.flagNoData = True |
|
361 | self.flagNoData = True | |
| 360 | self.flagDiscontinuousBlock = False |
|
362 | self.flagDiscontinuousBlock = False | |
| 361 | self.utctime = None |
|
363 | self.utctime = None | |
| 362 | self.timeZone = 0 |
|
364 | self.timeZone = 0 | |
| 363 | self.dstFlag = None |
|
365 | self.dstFlag = None | |
| 364 | self.errorCount = None |
|
366 | self.errorCount = None | |
| 365 | self.nCohInt = None |
|
367 | self.nCohInt = None | |
| 366 | self.blocksize = None |
|
368 | self.blocksize = None | |
| 367 | self.flagCohInt = False |
|
369 | self.flagCohInt = False | |
| 368 | self.flagDecodeData = False # asumo q la data no esta decodificada |
|
370 | self.flagDecodeData = False # asumo q la data no esta decodificada | |
| 369 | self.flagDeflipData = False # asumo q la data no esta sin flip |
|
371 | self.flagDeflipData = False # asumo q la data no esta sin flip | |
| 370 | self.flagShiftFFT = False |
|
372 | self.flagShiftFFT = False | |
| 371 | self.flagDataAsBlock = False # Asumo que la data es leida perfil a perfil |
|
373 | self.flagDataAsBlock = False # Asumo que la data es leida perfil a perfil | |
| 372 | self.profileIndex = 0 |
|
374 | self.profileIndex = 0 | |
| 373 |
self.metadata_list = ['type', 'heightList', 'timeZone', 'nProfiles', 'channelList', 'nCohInt', |
|
375 | self.metadata_list = ['type', 'heightList', 'timeZone', 'nProfiles', 'channelList', 'nCohInt', | |
| 374 | 'code', 'nCode', 'nBaud', 'ippSeconds', 'ipp'] |
|
376 | 'code', 'nCode', 'nBaud', 'ippSeconds', 'ipp'] | |
| 375 |
|
377 | |||
| 376 | def getNoisebyHildebrand(self, channel=None): |
|
378 | def getNoisebyHildebrand(self, channel=None): | |
| 377 | """ |
|
379 | """ | |
| 378 | Determino el nivel de ruido usando el metodo Hildebrand-Sekhon |
|
380 | Determino el nivel de ruido usando el metodo Hildebrand-Sekhon | |
| 379 |
|
381 | |||
| 380 | Return: |
|
382 | Return: | |
| 381 | noiselevel |
|
383 | noiselevel | |
| 382 | """ |
|
384 | """ | |
| 383 |
|
385 | |||
| 384 | if channel != None: |
|
386 | if channel != None: | |
| 385 | data = self.data[channel] |
|
387 | data = self.data[channel] | |
| 386 | nChannels = 1 |
|
388 | nChannels = 1 | |
| 387 | else: |
|
389 | else: | |
| 388 | data = self.data |
|
390 | data = self.data | |
| 389 | nChannels = self.nChannels |
|
391 | nChannels = self.nChannels | |
| 390 |
|
392 | |||
| 391 | noise = numpy.zeros(nChannels) |
|
393 | noise = numpy.zeros(nChannels) | |
| 392 | power = data * numpy.conjugate(data) |
|
394 | power = data * numpy.conjugate(data) | |
| 393 |
|
395 | |||
| 394 | for thisChannel in range(nChannels): |
|
396 | for thisChannel in range(nChannels): | |
| 395 | if nChannels == 1: |
|
397 | if nChannels == 1: | |
| 396 | daux = power[:].real |
|
398 | daux = power[:].real | |
| 397 | else: |
|
399 | else: | |
| 398 | daux = power[thisChannel, :].real |
|
400 | daux = power[thisChannel, :].real | |
| 399 | noise[thisChannel] = hildebrand_sekhon(daux, self.nCohInt) |
|
401 | noise[thisChannel] = hildebrand_sekhon(daux, self.nCohInt) | |
| 400 |
|
402 | |||
| 401 | return noise |
|
403 | return noise | |
| 402 |
|
404 | |||
| 403 | def getNoise(self, type=1, channel=None): |
|
405 | def getNoise(self, type=1, channel=None): | |
| 404 |
|
406 | |||
| 405 | if type == 1: |
|
407 | if type == 1: | |
| 406 | noise = self.getNoisebyHildebrand(channel) |
|
408 | noise = self.getNoisebyHildebrand(channel) | |
| 407 |
|
409 | |||
| 408 | return noise |
|
410 | return noise | |
| 409 |
|
411 | |||
| 410 | def getPower(self, channel=None): |
|
412 | def getPower(self, channel=None): | |
| 411 |
|
413 | |||
| 412 | if channel != None: |
|
414 | if channel != None: | |
| 413 | data = self.data[channel] |
|
415 | data = self.data[channel] | |
| 414 | else: |
|
416 | else: | |
| 415 | data = self.data |
|
417 | data = self.data | |
| 416 |
|
418 | |||
| 417 | power = data * numpy.conjugate(data) |
|
419 | power = data * numpy.conjugate(data) | |
| 418 | powerdB = 10 * numpy.log10(power.real) |
|
420 | powerdB = 10 * numpy.log10(power.real) | |
| 419 | powerdB = numpy.squeeze(powerdB) |
|
421 | powerdB = numpy.squeeze(powerdB) | |
| 420 |
|
422 | |||
| 421 | return powerdB |
|
423 | return powerdB | |
| 422 |
|
424 | |||
| 423 | @property |
|
425 | @property | |
| 424 | def timeInterval(self): |
|
426 | def timeInterval(self): | |
| 425 |
|
427 | |||
| 426 | return self.ippSeconds * self.nCohInt |
|
428 | return self.ippSeconds * self.nCohInt | |
| 427 |
|
429 | |||
| 428 | noise = property(getNoise, "I'm the 'nHeights' property.") |
|
430 | noise = property(getNoise, "I'm the 'nHeights' property.") | |
| 429 |
|
431 | |||
| 430 |
|
432 | |||
|
|
433 | class CrossProds(JROData): | |||
|
|
434 | ||||
|
|
435 | # data es un numpy array de 2 dmensiones (canales, alturas) | |||
|
|
436 | data = None | |||
|
|
437 | ||||
|
|
438 | def __init__(self): | |||
|
|
439 | ''' | |||
|
|
440 | Constructor | |||
|
|
441 | ''' | |||
|
|
442 | ||||
|
|
443 | self.useLocalTime = True | |||
|
|
444 | ''' | |||
|
|
445 | self.radarControllerHeaderObj = RadarControllerHeader() | |||
|
|
446 | self.systemHeaderObj = SystemHeader() | |||
|
|
447 | self.type = "Voltage" | |||
|
|
448 | self.data = None | |||
|
|
449 | # self.dtype = None | |||
|
|
450 | # self.nChannels = 0 | |||
|
|
451 | # self.nHeights = 0 | |||
|
|
452 | self.nProfiles = None | |||
|
|
453 | self.heightList = None | |||
|
|
454 | self.channelList = None | |||
|
|
455 | # self.channelIndexList = None | |||
|
|
456 | self.flagNoData = True | |||
|
|
457 | self.flagDiscontinuousBlock = False | |||
|
|
458 | self.utctime = None | |||
|
|
459 | self.timeZone = None | |||
|
|
460 | self.dstFlag = None | |||
|
|
461 | self.errorCount = None | |||
|
|
462 | self.nCohInt = None | |||
|
|
463 | self.blocksize = None | |||
|
|
464 | self.flagDecodeData = False # asumo q la data no esta decodificada | |||
|
|
465 | self.flagDeflipData = False # asumo q la data no esta sin flip | |||
|
|
466 | self.flagShiftFFT = False | |||
|
|
467 | self.flagDataAsBlock = False # Asumo que la data es leida perfil a perfil | |||
|
|
468 | self.profileIndex = 0 | |||
|
|
469 | ||||
|
|
470 | ||||
|
|
471 | def getNoisebyHildebrand(self, channel=None): | |||
|
|
472 | ||||
|
|
473 | ||||
|
|
474 | if channel != None: | |||
|
|
475 | data = self.data[channel] | |||
|
|
476 | nChannels = 1 | |||
|
|
477 | else: | |||
|
|
478 | data = self.data | |||
|
|
479 | nChannels = self.nChannels | |||
|
|
480 | ||||
|
|
481 | noise = numpy.zeros(nChannels) | |||
|
|
482 | power = data * numpy.conjugate(data) | |||
|
|
483 | ||||
|
|
484 | for thisChannel in range(nChannels): | |||
|
|
485 | if nChannels == 1: | |||
|
|
486 | daux = power[:].real | |||
|
|
487 | else: | |||
|
|
488 | daux = power[thisChannel, :].real | |||
|
|
489 | noise[thisChannel] = hildebrand_sekhon(daux, self.nCohInt) | |||
|
|
490 | ||||
|
|
491 | return noise | |||
|
|
492 | ||||
|
|
493 | def getNoise(self, type=1, channel=None): | |||
|
|
494 | ||||
|
|
495 | if type == 1: | |||
|
|
496 | noise = self.getNoisebyHildebrand(channel) | |||
|
|
497 | ||||
|
|
498 | return noise | |||
|
|
499 | ||||
|
|
500 | def getPower(self, channel=None): | |||
|
|
501 | ||||
|
|
502 | if channel != None: | |||
|
|
503 | data = self.data[channel] | |||
|
|
504 | else: | |||
|
|
505 | data = self.data | |||
|
|
506 | ||||
|
|
507 | power = data * numpy.conjugate(data) | |||
|
|
508 | powerdB = 10 * numpy.log10(power.real) | |||
|
|
509 | powerdB = numpy.squeeze(powerdB) | |||
|
|
510 | ||||
|
|
511 | return powerdB | |||
|
|
512 | ||||
|
|
513 | def getTimeInterval(self): | |||
|
|
514 | ||||
|
|
515 | timeInterval = self.ippSeconds * self.nCohInt | |||
|
|
516 | ||||
|
|
517 | return timeInterval | |||
|
|
518 | ||||
|
|
519 | noise = property(getNoise, "I'm the 'nHeights' property.") | |||
|
|
520 | timeInterval = property(getTimeInterval, "I'm the 'timeInterval' property") | |||
|
|
521 | ''' | |||
|
|
522 | def getTimeInterval(self): | |||
|
|
523 | ||||
|
|
524 | timeInterval = self.ippSeconds * self.nCohInt | |||
|
|
525 | ||||
|
|
526 | return timeInterval | |||
|
|
527 | ||||
|
|
528 | ||||
|
|
529 | ||||
| 431 | class Spectra(JROData): |
|
530 | class Spectra(JROData): | |
| 432 |
|
531 | |||
| 433 | def __init__(self): |
|
532 | def __init__(self): | |
| 434 | ''' |
|
533 | ''' | |
| 435 | Constructor |
|
534 | Constructor | |
| 436 | ''' |
|
535 | ''' | |
| 437 |
|
536 | |||
| 438 | self.data_dc = None |
|
537 | self.data_dc = None | |
| 439 | self.data_spc = None |
|
538 | self.data_spc = None | |
| 440 | self.data_cspc = None |
|
539 | self.data_cspc = None | |
| 441 | self.useLocalTime = True |
|
540 | self.useLocalTime = True | |
| 442 | self.radarControllerHeaderObj = RadarControllerHeader() |
|
541 | self.radarControllerHeaderObj = RadarControllerHeader() | |
| 443 | self.systemHeaderObj = SystemHeader() |
|
542 | self.systemHeaderObj = SystemHeader() | |
| 444 | self.type = "Spectra" |
|
543 | self.type = "Spectra" | |
| 445 | self.timeZone = 0 |
|
544 | self.timeZone = 0 | |
| 446 | self.nProfiles = None |
|
545 | self.nProfiles = None | |
| 447 | self.heightList = None |
|
546 | self.heightList = None | |
| 448 | self.channelList = None |
|
547 | self.channelList = None | |
| 449 | self.pairsList = None |
|
548 | self.pairsList = None | |
| 450 | self.flagNoData = True |
|
549 | self.flagNoData = True | |
| 451 | self.flagDiscontinuousBlock = False |
|
550 | self.flagDiscontinuousBlock = False | |
| 452 | self.utctime = None |
|
551 | self.utctime = None | |
| 453 | self.nCohInt = None |
|
552 | self.nCohInt = None | |
| 454 | self.nIncohInt = None |
|
553 | self.nIncohInt = None | |
| 455 | self.blocksize = None |
|
554 | self.blocksize = None | |
| 456 | self.nFFTPoints = None |
|
555 | self.nFFTPoints = None | |
| 457 | self.wavelength = None |
|
556 | self.wavelength = None | |
| 458 | self.flagDecodeData = False # asumo q la data no esta decodificada |
|
557 | self.flagDecodeData = False # asumo q la data no esta decodificada | |
| 459 | self.flagDeflipData = False # asumo q la data no esta sin flip |
|
558 | self.flagDeflipData = False # asumo q la data no esta sin flip | |
| 460 | self.flagShiftFFT = False |
|
559 | self.flagShiftFFT = False | |
| 461 | self.ippFactor = 1 |
|
560 | self.ippFactor = 1 | |
| 462 | self.beacon_heiIndexList = [] |
|
561 | self.beacon_heiIndexList = [] | |
| 463 | self.noise_estimation = None |
|
562 | self.noise_estimation = None | |
| 464 |
self.metadata_list = ['type', 'heightList', 'timeZone', 'pairsList', 'channelList', 'nCohInt', |
|
563 | self.metadata_list = ['type', 'heightList', 'timeZone', 'pairsList', 'channelList', 'nCohInt', | |
| 465 | 'code', 'nCode', 'nBaud', 'ippSeconds', 'ipp','nIncohInt', 'nFFTPoints', 'nProfiles'] |
|
564 | 'code', 'nCode', 'nBaud', 'ippSeconds', 'ipp','nIncohInt', 'nFFTPoints', 'nProfiles'] | |
| 466 |
|
565 | |||
| 467 | def getNoisebyHildebrand(self, xmin_index=None, xmax_index=None, ymin_index=None, ymax_index=None): |
|
566 | def getNoisebyHildebrand(self, xmin_index=None, xmax_index=None, ymin_index=None, ymax_index=None): | |
| 468 | """ |
|
567 | """ | |
| 469 | Determino el nivel de ruido usando el metodo Hildebrand-Sekhon |
|
568 | Determino el nivel de ruido usando el metodo Hildebrand-Sekhon | |
| 470 |
|
569 | |||
| 471 | Return: |
|
570 | Return: | |
| 472 | noiselevel |
|
571 | noiselevel | |
| 473 | """ |
|
572 | """ | |
| 474 |
|
573 | |||
| 475 | noise = numpy.zeros(self.nChannels) |
|
574 | noise = numpy.zeros(self.nChannels) | |
| 476 |
|
575 | |||
| 477 | for channel in range(self.nChannels): |
|
576 | for channel in range(self.nChannels): | |
| 478 | daux = self.data_spc[channel, |
|
577 | daux = self.data_spc[channel, | |
| 479 | xmin_index:xmax_index, ymin_index:ymax_index] |
|
578 | xmin_index:xmax_index, ymin_index:ymax_index] | |
| 480 | noise[channel] = hildebrand_sekhon(daux, self.nIncohInt) |
|
579 | noise[channel] = hildebrand_sekhon(daux, self.nIncohInt) | |
| 481 |
|
580 | |||
| 482 | return noise |
|
581 | return noise | |
| 483 |
|
582 | |||
| 484 | def getNoise(self, xmin_index=None, xmax_index=None, ymin_index=None, ymax_index=None): |
|
583 | def getNoise(self, xmin_index=None, xmax_index=None, ymin_index=None, ymax_index=None): | |
| 485 |
|
584 | |||
| 486 | if self.noise_estimation is not None: |
|
585 | if self.noise_estimation is not None: | |
| 487 | # this was estimated by getNoise Operation defined in jroproc_spectra.py |
|
586 | # this was estimated by getNoise Operation defined in jroproc_spectra.py | |
| 488 | return self.noise_estimation |
|
587 | return self.noise_estimation | |
| 489 | else: |
|
588 | else: | |
| 490 | noise = self.getNoisebyHildebrand( |
|
589 | noise = self.getNoisebyHildebrand( | |
| 491 | xmin_index, xmax_index, ymin_index, ymax_index) |
|
590 | xmin_index, xmax_index, ymin_index, ymax_index) | |
| 492 | return noise |
|
591 | return noise | |
| 493 |
|
592 | |||
| 494 | def getFreqRangeTimeResponse(self, extrapoints=0): |
|
593 | def getFreqRangeTimeResponse(self, extrapoints=0): | |
| 495 |
|
594 | |||
| 496 | deltafreq = self.getFmaxTimeResponse() / (self.nFFTPoints * self.ippFactor) |
|
595 | deltafreq = self.getFmaxTimeResponse() / (self.nFFTPoints * self.ippFactor) | |
| 497 | freqrange = deltafreq * (numpy.arange(self.nFFTPoints + extrapoints) - self.nFFTPoints / 2.) - deltafreq / 2 |
|
596 | freqrange = deltafreq * (numpy.arange(self.nFFTPoints + extrapoints) - self.nFFTPoints / 2.) - deltafreq / 2 | |
| 498 |
|
597 | |||
| 499 | return freqrange |
|
598 | return freqrange | |
| 500 |
|
599 | |||
| 501 | def getAcfRange(self, extrapoints=0): |
|
600 | def getAcfRange(self, extrapoints=0): | |
| 502 |
|
601 | |||
| 503 | deltafreq = 10. / (self.getFmax() / (self.nFFTPoints * self.ippFactor)) |
|
602 | deltafreq = 10. / (self.getFmax() / (self.nFFTPoints * self.ippFactor)) | |
| 504 | freqrange = deltafreq * (numpy.arange(self.nFFTPoints + extrapoints) -self.nFFTPoints / 2.) - deltafreq / 2 |
|
603 | freqrange = deltafreq * (numpy.arange(self.nFFTPoints + extrapoints) -self.nFFTPoints / 2.) - deltafreq / 2 | |
| 505 |
|
604 | |||
| 506 | return freqrange |
|
605 | return freqrange | |
| 507 |
|
606 | |||
| 508 | def getFreqRange(self, extrapoints=0): |
|
607 | def getFreqRange(self, extrapoints=0): | |
| 509 |
|
608 | |||
| 510 | deltafreq = self.getFmax() / (self.nFFTPoints * self.ippFactor) |
|
609 | deltafreq = self.getFmax() / (self.nFFTPoints * self.ippFactor) | |
| 511 | freqrange = deltafreq * (numpy.arange(self.nFFTPoints + extrapoints) -self.nFFTPoints / 2.) - deltafreq / 2 |
|
610 | freqrange = deltafreq * (numpy.arange(self.nFFTPoints + extrapoints) -self.nFFTPoints / 2.) - deltafreq / 2 | |
| 512 |
|
611 | |||
| 513 | return freqrange |
|
612 | return freqrange | |
| 514 |
|
613 | |||
| 515 | def getVelRange(self, extrapoints=0): |
|
614 | def getVelRange(self, extrapoints=0): | |
| 516 |
|
615 | |||
| 517 | deltav = self.getVmax() / (self.nFFTPoints * self.ippFactor) |
|
616 | deltav = self.getVmax() / (self.nFFTPoints * self.ippFactor) | |
| 518 | velrange = deltav * (numpy.arange(self.nFFTPoints + extrapoints) - self.nFFTPoints / 2.) |
|
617 | velrange = deltav * (numpy.arange(self.nFFTPoints + extrapoints) - self.nFFTPoints / 2.) | |
| 519 |
|
618 | |||
| 520 | if self.nmodes: |
|
619 | if self.nmodes: | |
| 521 | return velrange/self.nmodes |
|
620 | return velrange/self.nmodes | |
| 522 | else: |
|
621 | else: | |
| 523 | return velrange |
|
622 | return velrange | |
| 524 |
|
623 | |||
| 525 | @property |
|
624 | @property | |
| 526 | def nPairs(self): |
|
625 | def nPairs(self): | |
| 527 |
|
626 | |||
| 528 | return len(self.pairsList) |
|
627 | return len(self.pairsList) | |
| 529 |
|
628 | |||
| 530 | @property |
|
629 | @property | |
| 531 | def pairsIndexList(self): |
|
630 | def pairsIndexList(self): | |
| 532 |
|
631 | |||
| 533 | return list(range(self.nPairs)) |
|
632 | return list(range(self.nPairs)) | |
| 534 |
|
633 | |||
| 535 | @property |
|
634 | @property | |
| 536 | def normFactor(self): |
|
635 | def normFactor(self): | |
| 537 |
|
636 | |||
| 538 | pwcode = 1 |
|
637 | pwcode = 1 | |
| 539 |
|
638 | |||
| 540 | if self.flagDecodeData: |
|
639 | if self.flagDecodeData: | |
| 541 | pwcode = numpy.sum(self.code[0]**2) |
|
640 | pwcode = numpy.sum(self.code[0]**2) | |
| 542 | #normFactor = min(self.nFFTPoints,self.nProfiles)*self.nIncohInt*self.nCohInt*pwcode*self.windowOfFilter |
|
641 | #normFactor = min(self.nFFTPoints,self.nProfiles)*self.nIncohInt*self.nCohInt*pwcode*self.windowOfFilter | |
| 543 | normFactor = self.nProfiles * self.nIncohInt * self.nCohInt * pwcode * self.windowOfFilter |
|
642 | normFactor = self.nProfiles * self.nIncohInt * self.nCohInt * pwcode * self.windowOfFilter | |
| 544 |
|
643 | |||
| 545 | return normFactor |
|
644 | return normFactor | |
| 546 |
|
645 | |||
| 547 | @property |
|
646 | @property | |
| 548 | def flag_cspc(self): |
|
647 | def flag_cspc(self): | |
| 549 |
|
648 | |||
| 550 | if self.data_cspc is None: |
|
649 | if self.data_cspc is None: | |
| 551 | return True |
|
650 | return True | |
| 552 |
|
651 | |||
| 553 | return False |
|
652 | return False | |
| 554 |
|
653 | |||
| 555 | @property |
|
654 | @property | |
| 556 | def flag_dc(self): |
|
655 | def flag_dc(self): | |
| 557 |
|
656 | |||
| 558 | if self.data_dc is None: |
|
657 | if self.data_dc is None: | |
| 559 | return True |
|
658 | return True | |
| 560 |
|
659 | |||
| 561 | return False |
|
660 | return False | |
| 562 |
|
661 | |||
| 563 | @property |
|
662 | @property | |
| 564 | def timeInterval(self): |
|
663 | def timeInterval(self): | |
| 565 |
|
664 | |||
| 566 | timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt * self.nProfiles * self.ippFactor |
|
665 | timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt * self.nProfiles * self.ippFactor | |
| 567 | if self.nmodes: |
|
666 | if self.nmodes: | |
| 568 | return self.nmodes*timeInterval |
|
667 | return self.nmodes*timeInterval | |
| 569 | else: |
|
668 | else: | |
| 570 | return timeInterval |
|
669 | return timeInterval | |
| 571 |
|
670 | |||
| 572 | def getPower(self): |
|
671 | def getPower(self): | |
| 573 |
|
672 | |||
| 574 | factor = self.normFactor |
|
673 | factor = self.normFactor | |
| 575 | z = self.data_spc / factor |
|
674 | z = self.data_spc / factor | |
| 576 | z = numpy.where(numpy.isfinite(z), z, numpy.NAN) |
|
675 | z = numpy.where(numpy.isfinite(z), z, numpy.NAN) | |
| 577 | avg = numpy.average(z, axis=1) |
|
676 | avg = numpy.average(z, axis=1) | |
| 578 |
|
677 | |||
| 579 | return 10 * numpy.log10(avg) |
|
678 | return 10 * numpy.log10(avg) | |
| 580 |
|
679 | |||
| 581 | def getCoherence(self, pairsList=None, phase=False): |
|
680 | def getCoherence(self, pairsList=None, phase=False): | |
| 582 |
|
681 | |||
| 583 | z = [] |
|
682 | z = [] | |
| 584 | if pairsList is None: |
|
683 | if pairsList is None: | |
| 585 | pairsIndexList = self.pairsIndexList |
|
684 | pairsIndexList = self.pairsIndexList | |
| 586 | else: |
|
685 | else: | |
| 587 | pairsIndexList = [] |
|
686 | pairsIndexList = [] | |
| 588 | for pair in pairsList: |
|
687 | for pair in pairsList: | |
| 589 | if pair not in self.pairsList: |
|
688 | if pair not in self.pairsList: | |
| 590 | raise ValueError("Pair %s is not in dataOut.pairsList" % ( |
|
689 | raise ValueError("Pair %s is not in dataOut.pairsList" % ( | |
| 591 | pair)) |
|
690 | pair)) | |
| 592 | pairsIndexList.append(self.pairsList.index(pair)) |
|
691 | pairsIndexList.append(self.pairsList.index(pair)) | |
| 593 | for i in range(len(pairsIndexList)): |
|
692 | for i in range(len(pairsIndexList)): | |
| 594 | pair = self.pairsList[pairsIndexList[i]] |
|
693 | pair = self.pairsList[pairsIndexList[i]] | |
| 595 | ccf = numpy.average(self.data_cspc[pairsIndexList[i], :, :], axis=0) |
|
694 | ccf = numpy.average(self.data_cspc[pairsIndexList[i], :, :], axis=0) | |
| 596 | powa = numpy.average(self.data_spc[pair[0], :, :], axis=0) |
|
695 | powa = numpy.average(self.data_spc[pair[0], :, :], axis=0) | |
| 597 | powb = numpy.average(self.data_spc[pair[1], :, :], axis=0) |
|
696 | powb = numpy.average(self.data_spc[pair[1], :, :], axis=0) | |
| 598 | avgcoherenceComplex = ccf / numpy.sqrt(powa * powb) |
|
697 | avgcoherenceComplex = ccf / numpy.sqrt(powa * powb) | |
| 599 | if phase: |
|
698 | if phase: | |
| 600 | data = numpy.arctan2(avgcoherenceComplex.imag, |
|
699 | data = numpy.arctan2(avgcoherenceComplex.imag, | |
| 601 | avgcoherenceComplex.real) * 180 / numpy.pi |
|
700 | avgcoherenceComplex.real) * 180 / numpy.pi | |
| 602 | else: |
|
701 | else: | |
| 603 | data = numpy.abs(avgcoherenceComplex) |
|
702 | data = numpy.abs(avgcoherenceComplex) | |
| 604 |
|
703 | |||
| 605 | z.append(data) |
|
704 | z.append(data) | |
| 606 |
|
705 | |||
| 607 | return numpy.array(z) |
|
706 | return numpy.array(z) | |
| 608 |
|
707 | |||
| 609 | def setValue(self, value): |
|
708 | def setValue(self, value): | |
| 610 |
|
709 | |||
| 611 | print("This property should not be initialized") |
|
710 | print("This property should not be initialized") | |
| 612 |
|
711 | |||
| 613 | return |
|
712 | return | |
| 614 |
|
713 | |||
| 615 | noise = property(getNoise, setValue, "I'm the 'nHeights' property.") |
|
714 | noise = property(getNoise, setValue, "I'm the 'nHeights' property.") | |
| 616 |
|
715 | |||
| 617 |
|
716 | |||
| 618 | class SpectraHeis(Spectra): |
|
717 | class SpectraHeis(Spectra): | |
| 619 |
|
718 | |||
| 620 | def __init__(self): |
|
719 | def __init__(self): | |
| 621 |
|
720 | |||
| 622 | self.radarControllerHeaderObj = RadarControllerHeader() |
|
721 | self.radarControllerHeaderObj = RadarControllerHeader() | |
| 623 | self.systemHeaderObj = SystemHeader() |
|
722 | self.systemHeaderObj = SystemHeader() | |
| 624 | self.type = "SpectraHeis" |
|
723 | self.type = "SpectraHeis" | |
| 625 | self.nProfiles = None |
|
724 | self.nProfiles = None | |
| 626 | self.heightList = None |
|
725 | self.heightList = None | |
| 627 | self.channelList = None |
|
726 | self.channelList = None | |
| 628 | self.flagNoData = True |
|
727 | self.flagNoData = True | |
| 629 | self.flagDiscontinuousBlock = False |
|
728 | self.flagDiscontinuousBlock = False | |
| 630 | self.utctime = None |
|
729 | self.utctime = None | |
| 631 | self.blocksize = None |
|
730 | self.blocksize = None | |
| 632 | self.profileIndex = 0 |
|
731 | self.profileIndex = 0 | |
| 633 | self.nCohInt = 1 |
|
732 | self.nCohInt = 1 | |
| 634 | self.nIncohInt = 1 |
|
733 | self.nIncohInt = 1 | |
| 635 |
|
734 | |||
| 636 | @property |
|
735 | @property | |
| 637 | def normFactor(self): |
|
736 | def normFactor(self): | |
| 638 | pwcode = 1 |
|
737 | pwcode = 1 | |
| 639 | if self.flagDecodeData: |
|
738 | if self.flagDecodeData: | |
| 640 | pwcode = numpy.sum(self.code[0]**2) |
|
739 | pwcode = numpy.sum(self.code[0]**2) | |
| 641 |
|
740 | |||
| 642 | normFactor = self.nIncohInt * self.nCohInt * pwcode |
|
741 | normFactor = self.nIncohInt * self.nCohInt * pwcode | |
| 643 |
|
742 | |||
| 644 | return normFactor |
|
743 | return normFactor | |
| 645 |
|
744 | |||
| 646 | @property |
|
745 | @property | |
| 647 | def timeInterval(self): |
|
746 | def timeInterval(self): | |
| 648 |
|
747 | |||
| 649 | return self.ippSeconds * self.nCohInt * self.nIncohInt |
|
748 | return self.ippSeconds * self.nCohInt * self.nIncohInt | |
| 650 |
|
749 | |||
| 651 |
|
750 | |||
| 652 | class Fits(JROData): |
|
751 | class Fits(JROData): | |
| 653 |
|
752 | |||
| 654 | def __init__(self): |
|
753 | def __init__(self): | |
| 655 |
|
754 | |||
| 656 | self.type = "Fits" |
|
755 | self.type = "Fits" | |
| 657 | self.nProfiles = None |
|
756 | self.nProfiles = None | |
| 658 | self.heightList = None |
|
757 | self.heightList = None | |
| 659 | self.channelList = None |
|
758 | self.channelList = None | |
| 660 | self.flagNoData = True |
|
759 | self.flagNoData = True | |
| 661 | self.utctime = None |
|
760 | self.utctime = None | |
| 662 | self.nCohInt = 1 |
|
761 | self.nCohInt = 1 | |
| 663 | self.nIncohInt = 1 |
|
762 | self.nIncohInt = 1 | |
| 664 | self.useLocalTime = True |
|
763 | self.useLocalTime = True | |
| 665 | self.profileIndex = 0 |
|
764 | self.profileIndex = 0 | |
| 666 | self.timeZone = 0 |
|
765 | self.timeZone = 0 | |
| 667 |
|
766 | |||
| 668 | def getTimeRange(self): |
|
767 | def getTimeRange(self): | |
| 669 |
|
768 | |||
| 670 | datatime = [] |
|
769 | datatime = [] | |
| 671 |
|
770 | |||
| 672 | datatime.append(self.ltctime) |
|
771 | datatime.append(self.ltctime) | |
| 673 | datatime.append(self.ltctime + self.timeInterval) |
|
772 | datatime.append(self.ltctime + self.timeInterval) | |
| 674 |
|
773 | |||
| 675 | datatime = numpy.array(datatime) |
|
774 | datatime = numpy.array(datatime) | |
| 676 |
|
775 | |||
| 677 | return datatime |
|
776 | return datatime | |
| 678 |
|
777 | |||
| 679 | def getChannelIndexList(self): |
|
778 | def getChannelIndexList(self): | |
| 680 |
|
779 | |||
| 681 | return list(range(self.nChannels)) |
|
780 | return list(range(self.nChannels)) | |
| 682 |
|
781 | |||
| 683 | def getNoise(self, type=1): |
|
782 | def getNoise(self, type=1): | |
| 684 |
|
783 | |||
| 685 |
|
784 | |||
| 686 | if type == 1: |
|
785 | if type == 1: | |
| 687 | noise = self.getNoisebyHildebrand() |
|
786 | noise = self.getNoisebyHildebrand() | |
| 688 |
|
787 | |||
| 689 | if type == 2: |
|
788 | if type == 2: | |
| 690 | noise = self.getNoisebySort() |
|
789 | noise = self.getNoisebySort() | |
| 691 |
|
790 | |||
| 692 | if type == 3: |
|
791 | if type == 3: | |
| 693 | noise = self.getNoisebyWindow() |
|
792 | noise = self.getNoisebyWindow() | |
| 694 |
|
793 | |||
| 695 | return noise |
|
794 | return noise | |
| 696 |
|
795 | |||
| 697 | @property |
|
796 | @property | |
| 698 | def timeInterval(self): |
|
797 | def timeInterval(self): | |
| 699 |
|
798 | |||
| 700 | timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt |
|
799 | timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt | |
| 701 |
|
800 | |||
| 702 | return timeInterval |
|
801 | return timeInterval | |
| 703 |
|
802 | |||
| 704 | @property |
|
803 | @property | |
| 705 | def ippSeconds(self): |
|
804 | def ippSeconds(self): | |
| 706 | ''' |
|
805 | ''' | |
| 707 | ''' |
|
806 | ''' | |
| 708 | return self.ipp_sec |
|
807 | return self.ipp_sec | |
| 709 |
|
808 | |||
| 710 | noise = property(getNoise, "I'm the 'nHeights' property.") |
|
809 | noise = property(getNoise, "I'm the 'nHeights' property.") | |
| 711 |
|
810 | |||
| 712 |
|
811 | |||
| 713 | class Correlation(JROData): |
|
812 | class Correlation(JROData): | |
| 714 |
|
813 | |||
| 715 | def __init__(self): |
|
814 | def __init__(self): | |
| 716 | ''' |
|
815 | ''' | |
| 717 | Constructor |
|
816 | Constructor | |
| 718 | ''' |
|
817 | ''' | |
| 719 | self.radarControllerHeaderObj = RadarControllerHeader() |
|
818 | self.radarControllerHeaderObj = RadarControllerHeader() | |
| 720 | self.systemHeaderObj = SystemHeader() |
|
819 | self.systemHeaderObj = SystemHeader() | |
| 721 | self.type = "Correlation" |
|
820 | self.type = "Correlation" | |
| 722 | self.data = None |
|
821 | self.data = None | |
| 723 | self.dtype = None |
|
822 | self.dtype = None | |
| 724 | self.nProfiles = None |
|
823 | self.nProfiles = None | |
| 725 | self.heightList = None |
|
824 | self.heightList = None | |
| 726 | self.channelList = None |
|
825 | self.channelList = None | |
| 727 | self.flagNoData = True |
|
826 | self.flagNoData = True | |
| 728 | self.flagDiscontinuousBlock = False |
|
827 | self.flagDiscontinuousBlock = False | |
| 729 | self.utctime = None |
|
828 | self.utctime = None | |
| 730 | self.timeZone = 0 |
|
829 | self.timeZone = 0 | |
| 731 | self.dstFlag = None |
|
830 | self.dstFlag = None | |
| 732 | self.errorCount = None |
|
831 | self.errorCount = None | |
| 733 | self.blocksize = None |
|
832 | self.blocksize = None | |
| 734 | self.flagDecodeData = False # asumo q la data no esta decodificada |
|
833 | self.flagDecodeData = False # asumo q la data no esta decodificada | |
| 735 | self.flagDeflipData = False # asumo q la data no esta sin flip |
|
834 | self.flagDeflipData = False # asumo q la data no esta sin flip | |
| 736 | self.pairsList = None |
|
835 | self.pairsList = None | |
| 737 | self.nPoints = None |
|
836 | self.nPoints = None | |
| 738 |
|
837 | |||
| 739 | def getPairsList(self): |
|
838 | def getPairsList(self): | |
| 740 |
|
839 | |||
| 741 | return self.pairsList |
|
840 | return self.pairsList | |
| 742 |
|
841 | |||
| 743 | def getNoise(self, mode=2): |
|
842 | def getNoise(self, mode=2): | |
| 744 |
|
843 | |||
| 745 | indR = numpy.where(self.lagR == 0)[0][0] |
|
844 | indR = numpy.where(self.lagR == 0)[0][0] | |
| 746 | indT = numpy.where(self.lagT == 0)[0][0] |
|
845 | indT = numpy.where(self.lagT == 0)[0][0] | |
| 747 |
|
846 | |||
| 748 | jspectra0 = self.data_corr[:, :, indR, :] |
|
847 | jspectra0 = self.data_corr[:, :, indR, :] | |
| 749 | jspectra = copy.copy(jspectra0) |
|
848 | jspectra = copy.copy(jspectra0) | |
| 750 |
|
849 | |||
| 751 | num_chan = jspectra.shape[0] |
|
850 | num_chan = jspectra.shape[0] | |
| 752 | num_hei = jspectra.shape[2] |
|
851 | num_hei = jspectra.shape[2] | |
| 753 |
|
852 | |||
| 754 | freq_dc = jspectra.shape[1] / 2 |
|
853 | freq_dc = jspectra.shape[1] / 2 | |
| 755 | ind_vel = numpy.array([-2, -1, 1, 2]) + freq_dc |
|
854 | ind_vel = numpy.array([-2, -1, 1, 2]) + freq_dc | |
| 756 |
|
855 | |||
| 757 | if ind_vel[0] < 0: |
|
856 | if ind_vel[0] < 0: | |
| 758 | ind_vel[list(range(0, 1))] = ind_vel[list( |
|
857 | ind_vel[list(range(0, 1))] = ind_vel[list( | |
| 759 | range(0, 1))] + self.num_prof |
|
858 | range(0, 1))] + self.num_prof | |
| 760 |
|
859 | |||
| 761 | if mode == 1: |
|
860 | if mode == 1: | |
| 762 | jspectra[:, freq_dc, :] = ( |
|
861 | jspectra[:, freq_dc, :] = ( | |
| 763 | jspectra[:, ind_vel[1], :] + jspectra[:, ind_vel[2], :]) / 2 # CORRECCION |
|
862 | jspectra[:, ind_vel[1], :] + jspectra[:, ind_vel[2], :]) / 2 # CORRECCION | |
| 764 |
|
863 | |||
| 765 | if mode == 2: |
|
864 | if mode == 2: | |
| 766 |
|
865 | |||
| 767 | vel = numpy.array([-2, -1, 1, 2]) |
|
866 | vel = numpy.array([-2, -1, 1, 2]) | |
| 768 | xx = numpy.zeros([4, 4]) |
|
867 | xx = numpy.zeros([4, 4]) | |
| 769 |
|
868 | |||
| 770 | for fil in range(4): |
|
869 | for fil in range(4): | |
| 771 | xx[fil, :] = vel[fil]**numpy.asarray(list(range(4))) |
|
870 | xx[fil, :] = vel[fil]**numpy.asarray(list(range(4))) | |
| 772 |
|
871 | |||
| 773 | xx_inv = numpy.linalg.inv(xx) |
|
872 | xx_inv = numpy.linalg.inv(xx) | |
| 774 | xx_aux = xx_inv[0, :] |
|
873 | xx_aux = xx_inv[0, :] | |
| 775 |
|
874 | |||
| 776 | for ich in range(num_chan): |
|
875 | for ich in range(num_chan): | |
| 777 | yy = jspectra[ich, ind_vel, :] |
|
876 | yy = jspectra[ich, ind_vel, :] | |
| 778 | jspectra[ich, freq_dc, :] = numpy.dot(xx_aux, yy) |
|
877 | jspectra[ich, freq_dc, :] = numpy.dot(xx_aux, yy) | |
| 779 |
|
878 | |||
| 780 | junkid = jspectra[ich, freq_dc, :] <= 0 |
|
879 | junkid = jspectra[ich, freq_dc, :] <= 0 | |
| 781 | cjunkid = sum(junkid) |
|
880 | cjunkid = sum(junkid) | |
| 782 |
|
881 | |||
| 783 | if cjunkid.any(): |
|
882 | if cjunkid.any(): | |
| 784 | jspectra[ich, freq_dc, junkid.nonzero()] = ( |
|
883 | jspectra[ich, freq_dc, junkid.nonzero()] = ( | |
| 785 | jspectra[ich, ind_vel[1], junkid] + jspectra[ich, ind_vel[2], junkid]) / 2 |
|
884 | jspectra[ich, ind_vel[1], junkid] + jspectra[ich, ind_vel[2], junkid]) / 2 | |
| 786 |
|
885 | |||
| 787 | noise = jspectra0[:, freq_dc, :] - jspectra[:, freq_dc, :] |
|
886 | noise = jspectra0[:, freq_dc, :] - jspectra[:, freq_dc, :] | |
| 788 |
|
887 | |||
| 789 | return noise |
|
888 | return noise | |
| 790 |
|
889 | |||
| 791 | @property |
|
890 | @property | |
| 792 | def timeInterval(self): |
|
891 | def timeInterval(self): | |
| 793 |
|
892 | |||
| 794 | return self.ippSeconds * self.nCohInt * self.nProfiles |
|
893 | return self.ippSeconds * self.nCohInt * self.nProfiles | |
| 795 |
|
894 | |||
| 796 | def splitFunctions(self): |
|
895 | def splitFunctions(self): | |
| 797 |
|
896 | |||
| 798 | pairsList = self.pairsList |
|
897 | pairsList = self.pairsList | |
| 799 | ccf_pairs = [] |
|
898 | ccf_pairs = [] | |
| 800 | acf_pairs = [] |
|
899 | acf_pairs = [] | |
| 801 | ccf_ind = [] |
|
900 | ccf_ind = [] | |
| 802 | acf_ind = [] |
|
901 | acf_ind = [] | |
| 803 | for l in range(len(pairsList)): |
|
902 | for l in range(len(pairsList)): | |
| 804 | chan0 = pairsList[l][0] |
|
903 | chan0 = pairsList[l][0] | |
| 805 | chan1 = pairsList[l][1] |
|
904 | chan1 = pairsList[l][1] | |
| 806 |
|
905 | |||
| 807 | # Obteniendo pares de Autocorrelacion |
|
906 | # Obteniendo pares de Autocorrelacion | |
| 808 | if chan0 == chan1: |
|
907 | if chan0 == chan1: | |
| 809 | acf_pairs.append(chan0) |
|
908 | acf_pairs.append(chan0) | |
| 810 | acf_ind.append(l) |
|
909 | acf_ind.append(l) | |
| 811 | else: |
|
910 | else: | |
| 812 | ccf_pairs.append(pairsList[l]) |
|
911 | ccf_pairs.append(pairsList[l]) | |
| 813 | ccf_ind.append(l) |
|
912 | ccf_ind.append(l) | |
| 814 |
|
913 | |||
| 815 | data_acf = self.data_cf[acf_ind] |
|
914 | data_acf = self.data_cf[acf_ind] | |
| 816 | data_ccf = self.data_cf[ccf_ind] |
|
915 | data_ccf = self.data_cf[ccf_ind] | |
| 817 |
|
916 | |||
| 818 | return acf_ind, ccf_ind, acf_pairs, ccf_pairs, data_acf, data_ccf |
|
917 | return acf_ind, ccf_ind, acf_pairs, ccf_pairs, data_acf, data_ccf | |
| 819 |
|
918 | |||
| 820 | @property |
|
919 | @property | |
| 821 | def normFactor(self): |
|
920 | def normFactor(self): | |
| 822 | acf_ind, ccf_ind, acf_pairs, ccf_pairs, data_acf, data_ccf = self.splitFunctions() |
|
921 | acf_ind, ccf_ind, acf_pairs, ccf_pairs, data_acf, data_ccf = self.splitFunctions() | |
| 823 | acf_pairs = numpy.array(acf_pairs) |
|
922 | acf_pairs = numpy.array(acf_pairs) | |
| 824 | normFactor = numpy.zeros((self.nPairs, self.nHeights)) |
|
923 | normFactor = numpy.zeros((self.nPairs, self.nHeights)) | |
| 825 |
|
924 | |||
| 826 | for p in range(self.nPairs): |
|
925 | for p in range(self.nPairs): | |
| 827 | pair = self.pairsList[p] |
|
926 | pair = self.pairsList[p] | |
| 828 |
|
927 | |||
| 829 | ch0 = pair[0] |
|
928 | ch0 = pair[0] | |
| 830 | ch1 = pair[1] |
|
929 | ch1 = pair[1] | |
| 831 |
|
930 | |||
| 832 | ch0_max = numpy.max(data_acf[acf_pairs == ch0, :, :], axis=1) |
|
931 | ch0_max = numpy.max(data_acf[acf_pairs == ch0, :, :], axis=1) | |
| 833 | ch1_max = numpy.max(data_acf[acf_pairs == ch1, :, :], axis=1) |
|
932 | ch1_max = numpy.max(data_acf[acf_pairs == ch1, :, :], axis=1) | |
| 834 | normFactor[p, :] = numpy.sqrt(ch0_max * ch1_max) |
|
933 | normFactor[p, :] = numpy.sqrt(ch0_max * ch1_max) | |
| 835 |
|
934 | |||
| 836 | return normFactor |
|
935 | return normFactor | |
| 837 |
|
936 | |||
| 838 |
|
937 | |||
| 839 | class Parameters(Spectra): |
|
938 | class Parameters(Spectra): | |
| 840 |
|
939 | |||
| 841 | groupList = None # List of Pairs, Groups, etc |
|
940 | groupList = None # List of Pairs, Groups, etc | |
| 842 | data_param = None # Parameters obtained |
|
941 | data_param = None # Parameters obtained | |
| 843 | data_pre = None # Data Pre Parametrization |
|
942 | data_pre = None # Data Pre Parametrization | |
| 844 | data_SNR = None # Signal to Noise Ratio |
|
943 | data_SNR = None # Signal to Noise Ratio | |
| 845 | abscissaList = None # Abscissa, can be velocities, lags or time |
|
944 | abscissaList = None # Abscissa, can be velocities, lags or time | |
| 846 | utctimeInit = None # Initial UTC time |
|
945 | utctimeInit = None # Initial UTC time | |
| 847 | paramInterval = None # Time interval to calculate Parameters in seconds |
|
946 | paramInterval = None # Time interval to calculate Parameters in seconds | |
| 848 | useLocalTime = True |
|
947 | useLocalTime = True | |
| 849 | # Fitting |
|
948 | # Fitting | |
| 850 | data_error = None # Error of the estimation |
|
949 | data_error = None # Error of the estimation | |
| 851 | constants = None |
|
950 | constants = None | |
| 852 | library = None |
|
951 | library = None | |
| 853 | # Output signal |
|
952 | # Output signal | |
| 854 | outputInterval = None # Time interval to calculate output signal in seconds |
|
953 | outputInterval = None # Time interval to calculate output signal in seconds | |
| 855 | data_output = None # Out signal |
|
954 | data_output = None # Out signal | |
| 856 | nAvg = None |
|
955 | nAvg = None | |
| 857 | noise_estimation = None |
|
956 | noise_estimation = None | |
| 858 | GauSPC = None # Fit gaussian SPC |
|
957 | GauSPC = None # Fit gaussian SPC | |
| 859 |
|
958 | |||
| 860 | def __init__(self): |
|
959 | def __init__(self): | |
| 861 | ''' |
|
960 | ''' | |
| 862 | Constructor |
|
961 | Constructor | |
| 863 | ''' |
|
962 | ''' | |
| 864 | self.radarControllerHeaderObj = RadarControllerHeader() |
|
963 | self.radarControllerHeaderObj = RadarControllerHeader() | |
| 865 | self.systemHeaderObj = SystemHeader() |
|
964 | self.systemHeaderObj = SystemHeader() | |
| 866 | self.type = "Parameters" |
|
965 | self.type = "Parameters" | |
| 867 | self.timeZone = 0 |
|
966 | self.timeZone = 0 | |
| 868 |
|
967 | |||
| 869 | def getTimeRange1(self, interval): |
|
968 | def getTimeRange1(self, interval): | |
| 870 |
|
969 | |||
| 871 | datatime = [] |
|
970 | datatime = [] | |
| 872 |
|
971 | |||
| 873 | if self.useLocalTime: |
|
972 | if self.useLocalTime: | |
| 874 | time1 = self.utctimeInit - self.timeZone * 60 |
|
973 | time1 = self.utctimeInit - self.timeZone * 60 | |
| 875 | else: |
|
974 | else: | |
| 876 | time1 = self.utctimeInit |
|
975 | time1 = self.utctimeInit | |
| 877 |
|
976 | |||
| 878 | datatime.append(time1) |
|
977 | datatime.append(time1) | |
| 879 | datatime.append(time1 + interval) |
|
978 | datatime.append(time1 + interval) | |
| 880 | datatime = numpy.array(datatime) |
|
979 | datatime = numpy.array(datatime) | |
| 881 |
|
980 | |||
| 882 | return datatime |
|
981 | return datatime | |
| 883 |
|
982 | |||
| 884 | @property |
|
983 | @property | |
| 885 | def timeInterval(self): |
|
984 | def timeInterval(self): | |
| 886 |
|
985 | |||
| 887 | if hasattr(self, 'timeInterval1'): |
|
986 | if hasattr(self, 'timeInterval1'): | |
| 888 | return self.timeInterval1 |
|
987 | return self.timeInterval1 | |
| 889 | else: |
|
988 | else: | |
| 890 | return self.paramInterval |
|
989 | return self.paramInterval | |
| 891 |
|
990 | |||
|
|
991 | ||||
| 892 | def setValue(self, value): |
|
992 | def setValue(self, value): | |
| 893 |
|
993 | |||
| 894 | print("This property should not be initialized") |
|
994 | print("This property should not be initialized") | |
| 895 |
|
995 | |||
| 896 | return |
|
996 | return | |
| 897 |
|
997 | |||
| 898 | def getNoise(self): |
|
998 | def getNoise(self): | |
| 899 |
|
999 | |||
| 900 | return self.spc_noise |
|
1000 | return self.spc_noise | |
| 901 |
|
1001 | |||
| 902 | noise = property(getNoise, setValue, "I'm the 'Noise' property.") |
|
1002 | noise = property(getNoise, setValue, "I'm the 'Noise' property.") | |
| 903 |
|
1003 | |||
| 904 |
|
1004 | |||
| 905 | class PlotterData(object): |
|
1005 | class PlotterData(object): | |
| 906 | ''' |
|
1006 | ''' | |
| 907 | Object to hold data to be plotted |
|
1007 | Object to hold data to be plotted | |
| 908 | ''' |
|
1008 | ''' | |
| 909 |
|
1009 | |||
| 910 | MAXNUMX = 200 |
|
1010 | MAXNUMX = 200 | |
| 911 | MAXNUMY = 200 |
|
1011 | MAXNUMY = 200 | |
| 912 |
|
1012 | |||
| 913 | def __init__(self, code, exp_code, localtime=True): |
|
1013 | def __init__(self, code, exp_code, localtime=True): | |
| 914 |
|
1014 | |||
| 915 | self.key = code |
|
1015 | self.key = code | |
| 916 | self.exp_code = exp_code |
|
1016 | self.exp_code = exp_code | |
| 917 | self.ready = False |
|
1017 | self.ready = False | |
| 918 | self.flagNoData = False |
|
1018 | self.flagNoData = False | |
| 919 | self.localtime = localtime |
|
1019 | self.localtime = localtime | |
| 920 | self.data = {} |
|
1020 | self.data = {} | |
| 921 | self.meta = {} |
|
1021 | self.meta = {} | |
| 922 | self.__heights = [] |
|
1022 | self.__heights = [] | |
| 923 |
|
1023 | |||
| 924 | def __str__(self): |
|
1024 | def __str__(self): | |
| 925 | dum = ['{}{}'.format(key, self.shape(key)) for key in self.data] |
|
1025 | dum = ['{}{}'.format(key, self.shape(key)) for key in self.data] | |
| 926 | return 'Data[{}][{}]'.format(';'.join(dum), len(self.times)) |
|
1026 | return 'Data[{}][{}]'.format(';'.join(dum), len(self.times)) | |
| 927 |
|
1027 | |||
| 928 | def __len__(self): |
|
1028 | def __len__(self): | |
| 929 | return len(self.data) |
|
1029 | return len(self.data) | |
| 930 |
|
1030 | |||
| 931 | def __getitem__(self, key): |
|
1031 | def __getitem__(self, key): | |
| 932 | if isinstance(key, int): |
|
1032 | if isinstance(key, int): | |
| 933 | return self.data[self.times[key]] |
|
1033 | return self.data[self.times[key]] | |
| 934 | elif isinstance(key, str): |
|
1034 | elif isinstance(key, str): | |
| 935 | ret = numpy.array([self.data[x][key] for x in self.times]) |
|
1035 | ret = numpy.array([self.data[x][key] for x in self.times]) | |
| 936 | if ret.ndim > 1: |
|
1036 | if ret.ndim > 1: | |
| 937 | ret = numpy.swapaxes(ret, 0, 1) |
|
1037 | ret = numpy.swapaxes(ret, 0, 1) | |
| 938 | return ret |
|
1038 | return ret | |
| 939 |
|
1039 | |||
| 940 | def __contains__(self, key): |
|
1040 | def __contains__(self, key): | |
| 941 | return key in self.data[self.min_time] |
|
1041 | return key in self.data[self.min_time] | |
| 942 |
|
1042 | |||
| 943 | def setup(self): |
|
1043 | def setup(self): | |
| 944 | ''' |
|
1044 | ''' | |
| 945 | Configure object |
|
1045 | Configure object | |
| 946 | ''' |
|
1046 | ''' | |
| 947 | self.type = '' |
|
1047 | self.type = '' | |
| 948 | self.ready = False |
|
1048 | self.ready = False | |
| 949 | del self.data |
|
1049 | del self.data | |
| 950 | self.data = {} |
|
1050 | self.data = {} | |
| 951 | self.__heights = [] |
|
1051 | self.__heights = [] | |
| 952 | self.__all_heights = set() |
|
1052 | self.__all_heights = set() | |
| 953 |
|
1053 | |||
| 954 | def shape(self, key): |
|
1054 | def shape(self, key): | |
| 955 | ''' |
|
1055 | ''' | |
| 956 | Get the shape of the one-element data for the given key |
|
1056 | Get the shape of the one-element data for the given key | |
| 957 | ''' |
|
1057 | ''' | |
| 958 |
|
1058 | |||
| 959 | if len(self.data[self.min_time][key]): |
|
1059 | if len(self.data[self.min_time][key]): | |
| 960 | return self.data[self.min_time][key].shape |
|
1060 | return self.data[self.min_time][key].shape | |
| 961 | return (0,) |
|
1061 | return (0,) | |
| 962 |
|
1062 | |||
| 963 | def update(self, data, tm, meta={}): |
|
1063 | def update(self, data, tm, meta={}): | |
| 964 | ''' |
|
1064 | ''' | |
| 965 | Update data object with new dataOut |
|
1065 | Update data object with new dataOut | |
| 966 | ''' |
|
1066 | ''' | |
| 967 |
|
1067 | |||
| 968 | self.data[tm] = data |
|
1068 | self.data[tm] = data | |
| 969 |
|
1069 | |||
| 970 | for key, value in meta.items(): |
|
1070 | for key, value in meta.items(): | |
| 971 | setattr(self, key, value) |
|
1071 | setattr(self, key, value) | |
| 972 |
|
1072 | |||
| 973 | def normalize_heights(self): |
|
1073 | def normalize_heights(self): | |
| 974 | ''' |
|
1074 | ''' | |
| 975 | Ensure same-dimension of the data for different heighList |
|
1075 | Ensure same-dimension of the data for different heighList | |
| 976 | ''' |
|
1076 | ''' | |
| 977 |
|
1077 | |||
| 978 | H = numpy.array(list(self.__all_heights)) |
|
1078 | H = numpy.array(list(self.__all_heights)) | |
| 979 | H.sort() |
|
1079 | H.sort() | |
| 980 | for key in self.data: |
|
1080 | for key in self.data: | |
| 981 | shape = self.shape(key)[:-1] + H.shape |
|
1081 | shape = self.shape(key)[:-1] + H.shape | |
| 982 | for tm, obj in list(self.data[key].items()): |
|
1082 | for tm, obj in list(self.data[key].items()): | |
| 983 | h = self.__heights[self.times.tolist().index(tm)] |
|
1083 | h = self.__heights[self.times.tolist().index(tm)] | |
| 984 | if H.size == h.size: |
|
1084 | if H.size == h.size: | |
| 985 | continue |
|
1085 | continue | |
| 986 | index = numpy.where(numpy.in1d(H, h))[0] |
|
1086 | index = numpy.where(numpy.in1d(H, h))[0] | |
| 987 | dummy = numpy.zeros(shape) + numpy.nan |
|
1087 | dummy = numpy.zeros(shape) + numpy.nan | |
| 988 | if len(shape) == 2: |
|
1088 | if len(shape) == 2: | |
| 989 | dummy[:, index] = obj |
|
1089 | dummy[:, index] = obj | |
| 990 | else: |
|
1090 | else: | |
| 991 | dummy[index] = obj |
|
1091 | dummy[index] = obj | |
| 992 | self.data[key][tm] = dummy |
|
1092 | self.data[key][tm] = dummy | |
| 993 |
|
1093 | |||
| 994 | self.__heights = [H for tm in self.times] |
|
1094 | self.__heights = [H for tm in self.times] | |
| 995 |
|
1095 | |||
| 996 | def jsonify(self, tm, plot_name, plot_type, decimate=False): |
|
1096 | def jsonify(self, tm, plot_name, plot_type, decimate=False): | |
| 997 | ''' |
|
1097 | ''' | |
| 998 | Convert data to json |
|
1098 | Convert data to json | |
| 999 | ''' |
|
1099 | ''' | |
| 1000 |
|
1100 | |||
| 1001 | meta = {} |
|
1101 | meta = {} | |
| 1002 | meta['xrange'] = [] |
|
1102 | meta['xrange'] = [] | |
| 1003 | dy = int(len(self.yrange)/self.MAXNUMY) + 1 |
|
1103 | dy = int(len(self.yrange)/self.MAXNUMY) + 1 | |
| 1004 | tmp = self.data[tm][self.key] |
|
1104 | tmp = self.data[tm][self.key] | |
| 1005 | shape = tmp.shape |
|
1105 | shape = tmp.shape | |
| 1006 | if len(shape) == 2: |
|
1106 | if len(shape) == 2: | |
| 1007 | data = self.roundFloats(self.data[tm][self.key][::, ::dy].tolist()) |
|
1107 | data = self.roundFloats(self.data[tm][self.key][::, ::dy].tolist()) | |
| 1008 | elif len(shape) == 3: |
|
1108 | elif len(shape) == 3: | |
| 1009 | dx = int(self.data[tm][self.key].shape[1]/self.MAXNUMX) + 1 |
|
1109 | dx = int(self.data[tm][self.key].shape[1]/self.MAXNUMX) + 1 | |
| 1010 | data = self.roundFloats( |
|
1110 | data = self.roundFloats( | |
| 1011 | self.data[tm][self.key][::, ::dx, ::dy].tolist()) |
|
1111 | self.data[tm][self.key][::, ::dx, ::dy].tolist()) | |
| 1012 | meta['xrange'] = self.roundFloats(self.xrange[2][::dx].tolist()) |
|
1112 | meta['xrange'] = self.roundFloats(self.xrange[2][::dx].tolist()) | |
| 1013 | else: |
|
1113 | else: | |
| 1014 | data = self.roundFloats(self.data[tm][self.key].tolist()) |
|
1114 | data = self.roundFloats(self.data[tm][self.key].tolist()) | |
| 1015 |
|
1115 | |||
| 1016 | ret = { |
|
1116 | ret = { | |
| 1017 | 'plot': plot_name, |
|
1117 | 'plot': plot_name, | |
| 1018 | 'code': self.exp_code, |
|
1118 | 'code': self.exp_code, | |
| 1019 | 'time': float(tm), |
|
1119 | 'time': float(tm), | |
| 1020 | 'data': data, |
|
1120 | 'data': data, | |
| 1021 | } |
|
1121 | } | |
| 1022 | meta['type'] = plot_type |
|
1122 | meta['type'] = plot_type | |
| 1023 | meta['interval'] = float(self.interval) |
|
1123 | meta['interval'] = float(self.interval) | |
| 1024 | meta['localtime'] = self.localtime |
|
1124 | meta['localtime'] = self.localtime | |
| 1025 | meta['yrange'] = self.roundFloats(self.yrange[::dy].tolist()) |
|
1125 | meta['yrange'] = self.roundFloats(self.yrange[::dy].tolist()) | |
| 1026 | meta.update(self.meta) |
|
1126 | meta.update(self.meta) | |
| 1027 | ret['metadata'] = meta |
|
1127 | ret['metadata'] = meta | |
| 1028 | return json.dumps(ret) |
|
1128 | return json.dumps(ret) | |
| 1029 |
|
1129 | |||
| 1030 | @property |
|
1130 | @property | |
| 1031 | def times(self): |
|
1131 | def times(self): | |
| 1032 | ''' |
|
1132 | ''' | |
| 1033 | Return the list of times of the current data |
|
1133 | Return the list of times of the current data | |
| 1034 | ''' |
|
1134 | ''' | |
| 1035 |
|
1135 | |||
| 1036 | ret = [t for t in self.data] |
|
1136 | ret = [t for t in self.data] | |
| 1037 | ret.sort() |
|
1137 | ret.sort() | |
| 1038 | return numpy.array(ret) |
|
1138 | return numpy.array(ret) | |
| 1039 |
|
1139 | |||
| 1040 | @property |
|
1140 | @property | |
| 1041 | def min_time(self): |
|
1141 | def min_time(self): | |
| 1042 | ''' |
|
1142 | ''' | |
| 1043 | Return the minimun time value |
|
1143 | Return the minimun time value | |
| 1044 | ''' |
|
1144 | ''' | |
| 1045 |
|
1145 | |||
| 1046 | return self.times[0] |
|
1146 | return self.times[0] | |
| 1047 |
|
1147 | |||
| 1048 | @property |
|
1148 | @property | |
| 1049 | def max_time(self): |
|
1149 | def max_time(self): | |
| 1050 | ''' |
|
1150 | ''' | |
| 1051 | Return the maximun time value |
|
1151 | Return the maximun time value | |
| 1052 | ''' |
|
1152 | ''' | |
| 1053 |
|
1153 | |||
| 1054 | return self.times[-1] |
|
1154 | return self.times[-1] | |
| 1055 |
|
1155 | |||
| 1056 | # @property |
|
1156 | # @property | |
| 1057 | # def heights(self): |
|
1157 | # def heights(self): | |
| 1058 | # ''' |
|
1158 | # ''' | |
| 1059 | # Return the list of heights of the current data |
|
1159 | # Return the list of heights of the current data | |
| 1060 | # ''' |
|
1160 | # ''' | |
| 1061 |
|
1161 | |||
| 1062 | # return numpy.array(self.__heights[-1]) |
|
1162 | # return numpy.array(self.__heights[-1]) | |
| 1063 |
|
1163 | |||
| 1064 | @staticmethod |
|
1164 | @staticmethod | |
| 1065 | def roundFloats(obj): |
|
1165 | def roundFloats(obj): | |
| 1066 | if isinstance(obj, list): |
|
1166 | if isinstance(obj, list): | |
| 1067 | return list(map(PlotterData.roundFloats, obj)) |
|
1167 | return list(map(PlotterData.roundFloats, obj)) | |
| 1068 | elif isinstance(obj, float): |
|
1168 | elif isinstance(obj, float): | |
| 1069 | return round(obj, 2) |
|
1169 | return round(obj, 2) | |
| @@ -1,906 +1,909 | |||||
| 1 | ''' |
|
1 | ''' | |
| 2 |
|
2 | |||
| 3 | $Author: murco $ |
|
3 | $Author: murco $ | |
| 4 | $Id: JROHeaderIO.py 151 2012-10-31 19:00:51Z murco $ |
|
4 | $Id: JROHeaderIO.py 151 2012-10-31 19:00:51Z murco $ | |
| 5 | ''' |
|
5 | ''' | |
| 6 | import sys |
|
6 | import sys | |
| 7 | import numpy |
|
7 | import numpy | |
| 8 | import copy |
|
8 | import copy | |
| 9 | import datetime |
|
9 | import datetime | |
| 10 | import inspect |
|
10 | import inspect | |
| 11 | from schainpy.utils import log |
|
11 | from schainpy.utils import log | |
| 12 |
|
12 | |||
| 13 | SPEED_OF_LIGHT = 299792458 |
|
13 | SPEED_OF_LIGHT = 299792458 | |
| 14 | SPEED_OF_LIGHT = 3e8 |
|
14 | SPEED_OF_LIGHT = 3e8 | |
| 15 |
|
15 | |||
| 16 | BASIC_STRUCTURE = numpy.dtype([ |
|
16 | BASIC_STRUCTURE = numpy.dtype([ | |
| 17 | ('nSize', '<u4'), |
|
17 | ('nSize', '<u4'), | |
| 18 | ('nVersion', '<u2'), |
|
18 | ('nVersion', '<u2'), | |
| 19 | ('nDataBlockId', '<u4'), |
|
19 | ('nDataBlockId', '<u4'), | |
| 20 | ('nUtime', '<u4'), |
|
20 | ('nUtime', '<u4'), | |
| 21 | ('nMilsec', '<u2'), |
|
21 | ('nMilsec', '<u2'), | |
| 22 | ('nTimezone', '<i2'), |
|
22 | ('nTimezone', '<i2'), | |
| 23 | ('nDstflag', '<i2'), |
|
23 | ('nDstflag', '<i2'), | |
| 24 | ('nErrorCount', '<u4') |
|
24 | ('nErrorCount', '<u4') | |
| 25 | ]) |
|
25 | ]) | |
| 26 |
|
26 | |||
| 27 | SYSTEM_STRUCTURE = numpy.dtype([ |
|
27 | SYSTEM_STRUCTURE = numpy.dtype([ | |
| 28 | ('nSize', '<u4'), |
|
28 | ('nSize', '<u4'), | |
| 29 | ('nNumSamples', '<u4'), |
|
29 | ('nNumSamples', '<u4'), | |
| 30 | ('nNumProfiles', '<u4'), |
|
30 | ('nNumProfiles', '<u4'), | |
| 31 | ('nNumChannels', '<u4'), |
|
31 | ('nNumChannels', '<u4'), | |
| 32 | ('nADCResolution', '<u4'), |
|
32 | ('nADCResolution', '<u4'), | |
| 33 | ('nPCDIOBusWidth', '<u4'), |
|
33 | ('nPCDIOBusWidth', '<u4'), | |
| 34 | ]) |
|
34 | ]) | |
| 35 |
|
35 | |||
| 36 | RADAR_STRUCTURE = numpy.dtype([ |
|
36 | RADAR_STRUCTURE = numpy.dtype([ | |
| 37 | ('nSize', '<u4'), |
|
37 | ('nSize', '<u4'), | |
| 38 | ('nExpType', '<u4'), |
|
38 | ('nExpType', '<u4'), | |
| 39 | ('nNTx', '<u4'), |
|
39 | ('nNTx', '<u4'), | |
| 40 | ('fIpp', '<f4'), |
|
40 | ('fIpp', '<f4'), | |
| 41 | ('fTxA', '<f4'), |
|
41 | ('fTxA', '<f4'), | |
| 42 | ('fTxB', '<f4'), |
|
42 | ('fTxB', '<f4'), | |
| 43 | ('nNumWindows', '<u4'), |
|
43 | ('nNumWindows', '<u4'), | |
| 44 | ('nNumTaus', '<u4'), |
|
44 | ('nNumTaus', '<u4'), | |
| 45 | ('nCodeType', '<u4'), |
|
45 | ('nCodeType', '<u4'), | |
| 46 | ('nLine6Function', '<u4'), |
|
46 | ('nLine6Function', '<u4'), | |
| 47 | ('nLine5Function', '<u4'), |
|
47 | ('nLine5Function', '<u4'), | |
| 48 | ('fClock', '<f4'), |
|
48 | ('fClock', '<f4'), | |
| 49 | ('nPrePulseBefore', '<u4'), |
|
49 | ('nPrePulseBefore', '<u4'), | |
| 50 | ('nPrePulseAfter', '<u4'), |
|
50 | ('nPrePulseAfter', '<u4'), | |
| 51 | ('sRangeIPP', '<a20'), |
|
51 | ('sRangeIPP', '<a20'), | |
| 52 | ('sRangeTxA', '<a20'), |
|
52 | ('sRangeTxA', '<a20'), | |
| 53 | ('sRangeTxB', '<a20'), |
|
53 | ('sRangeTxB', '<a20'), | |
| 54 | ]) |
|
54 | ]) | |
| 55 |
|
55 | |||
| 56 | SAMPLING_STRUCTURE = numpy.dtype( |
|
56 | SAMPLING_STRUCTURE = numpy.dtype( | |
| 57 | [('h0', '<f4'), ('dh', '<f4'), ('nsa', '<u4')]) |
|
57 | [('h0', '<f4'), ('dh', '<f4'), ('nsa', '<u4')]) | |
| 58 |
|
58 | |||
| 59 |
|
59 | |||
| 60 | PROCESSING_STRUCTURE = numpy.dtype([ |
|
60 | PROCESSING_STRUCTURE = numpy.dtype([ | |
| 61 | ('nSize', '<u4'), |
|
61 | ('nSize', '<u4'), | |
| 62 | ('nDataType', '<u4'), |
|
62 | ('nDataType', '<u4'), | |
| 63 | ('nSizeOfDataBlock', '<u4'), |
|
63 | ('nSizeOfDataBlock', '<u4'), | |
| 64 | ('nProfilesperBlock', '<u4'), |
|
64 | ('nProfilesperBlock', '<u4'), | |
| 65 | ('nDataBlocksperFile', '<u4'), |
|
65 | ('nDataBlocksperFile', '<u4'), | |
| 66 | ('nNumWindows', '<u4'), |
|
66 | ('nNumWindows', '<u4'), | |
| 67 | ('nProcessFlags', '<u4'), |
|
67 | ('nProcessFlags', '<u4'), | |
| 68 | ('nCoherentIntegrations', '<u4'), |
|
68 | ('nCoherentIntegrations', '<u4'), | |
| 69 | ('nIncoherentIntegrations', '<u4'), |
|
69 | ('nIncoherentIntegrations', '<u4'), | |
| 70 | ('nTotalSpectra', '<u4') |
|
70 | ('nTotalSpectra', '<u4') | |
| 71 | ]) |
|
71 | ]) | |
| 72 |
|
72 | |||
| 73 |
|
73 | |||
| 74 | class Header(object): |
|
74 | class Header(object): | |
| 75 |
|
75 | |||
| 76 | def __init__(self): |
|
76 | def __init__(self): | |
| 77 | raise NotImplementedError |
|
77 | raise NotImplementedError | |
| 78 |
|
78 | |||
| 79 | def copy(self): |
|
79 | def copy(self): | |
| 80 | return copy.deepcopy(self) |
|
80 | return copy.deepcopy(self) | |
| 81 |
|
81 | |||
| 82 | def read(self): |
|
82 | def read(self): | |
| 83 |
|
83 | |||
| 84 | raise NotImplementedError |
|
84 | raise NotImplementedError | |
| 85 |
|
85 | |||
| 86 | def write(self): |
|
86 | def write(self): | |
| 87 |
|
87 | |||
| 88 | raise NotImplementedError |
|
88 | raise NotImplementedError | |
| 89 |
|
89 | |||
| 90 | def getAllowedArgs(self): |
|
90 | def getAllowedArgs(self): | |
| 91 | args = inspect.getargspec(self.__init__).args |
|
91 | args = inspect.getargspec(self.__init__).args | |
| 92 | try: |
|
92 | try: | |
| 93 | args.remove('self') |
|
93 | args.remove('self') | |
| 94 | except: |
|
94 | except: | |
| 95 | pass |
|
95 | pass | |
| 96 | return args |
|
96 | return args | |
| 97 |
|
97 | |||
| 98 | def getAsDict(self): |
|
98 | def getAsDict(self): | |
| 99 | args = self.getAllowedArgs() |
|
99 | args = self.getAllowedArgs() | |
| 100 | asDict = {} |
|
100 | asDict = {} | |
| 101 | for x in args: |
|
101 | for x in args: | |
| 102 | asDict[x] = self[x] |
|
102 | asDict[x] = self[x] | |
| 103 | return asDict |
|
103 | return asDict | |
| 104 |
|
104 | |||
| 105 | def __getitem__(self, name): |
|
105 | def __getitem__(self, name): | |
| 106 | return getattr(self, name) |
|
106 | return getattr(self, name) | |
| 107 |
|
107 | |||
| 108 | def printInfo(self): |
|
108 | def printInfo(self): | |
| 109 |
|
109 | |||
| 110 | message = "#" * 50 + "\n" |
|
110 | message = "#" * 50 + "\n" | |
| 111 | message += self.__class__.__name__.upper() + "\n" |
|
111 | message += self.__class__.__name__.upper() + "\n" | |
| 112 | message += "#" * 50 + "\n" |
|
112 | message += "#" * 50 + "\n" | |
| 113 |
|
113 | |||
| 114 | keyList = list(self.__dict__.keys()) |
|
114 | keyList = list(self.__dict__.keys()) | |
| 115 | keyList.sort() |
|
115 | keyList.sort() | |
| 116 |
|
116 | |||
| 117 | for key in keyList: |
|
117 | for key in keyList: | |
| 118 | message += "%s = %s" % (key, self.__dict__[key]) + "\n" |
|
118 | message += "%s = %s" % (key, self.__dict__[key]) + "\n" | |
| 119 |
|
119 | |||
| 120 | if "size" not in keyList: |
|
120 | if "size" not in keyList: | |
| 121 | attr = getattr(self, "size") |
|
121 | attr = getattr(self, "size") | |
| 122 |
|
122 | |||
| 123 | if attr: |
|
123 | if attr: | |
| 124 | message += "%s = %s" % ("size", attr) + "\n" |
|
124 | message += "%s = %s" % ("size", attr) + "\n" | |
| 125 |
|
125 | |||
| 126 | print(message) |
|
126 | print(message) | |
| 127 |
|
127 | |||
| 128 |
|
128 | |||
| 129 | class BasicHeader(Header): |
|
129 | class BasicHeader(Header): | |
| 130 |
|
130 | |||
| 131 | size = None |
|
131 | size = None | |
| 132 | version = None |
|
132 | version = None | |
| 133 | dataBlock = None |
|
133 | dataBlock = None | |
| 134 | utc = None |
|
134 | utc = None | |
| 135 | ltc = None |
|
135 | ltc = None | |
| 136 | miliSecond = None |
|
136 | miliSecond = None | |
| 137 | timeZone = None |
|
137 | timeZone = None | |
| 138 | dstFlag = None |
|
138 | dstFlag = None | |
| 139 | errorCount = None |
|
139 | errorCount = None | |
| 140 |
|
|
140 | F = None | |
| 141 | structure = BASIC_STRUCTURE |
|
141 | structure = BASIC_STRUCTURE | |
| 142 | __LOCALTIME = None |
|
142 | __LOCALTIME = None | |
| 143 |
|
143 | |||
| 144 | def __init__(self, useLocalTime=True): |
|
144 | def __init__(self, useLocalTime=True): | |
| 145 |
|
145 | |||
| 146 | self.size = 24 |
|
146 | self.size = 24 | |
| 147 | self.version = 0 |
|
147 | self.version = 0 | |
| 148 | self.dataBlock = 0 |
|
148 | self.dataBlock = 0 | |
| 149 | self.utc = 0 |
|
149 | self.utc = 0 | |
| 150 | self.miliSecond = 0 |
|
150 | self.miliSecond = 0 | |
| 151 | self.timeZone = 0 |
|
151 | self.timeZone = 0 | |
| 152 | self.dstFlag = 0 |
|
152 | self.dstFlag = 0 | |
| 153 | self.errorCount = 0 |
|
153 | self.errorCount = 0 | |
| 154 |
|
154 | |||
| 155 | self.useLocalTime = useLocalTime |
|
155 | self.useLocalTime = useLocalTime | |
| 156 |
|
156 | |||
| 157 | def read(self, fp): |
|
157 | def read(self, fp): | |
| 158 |
|
158 | |||
| 159 | self.length = 0 |
|
159 | self.length = 0 | |
| 160 | try: |
|
160 | try: | |
| 161 | if hasattr(fp, 'read'): |
|
161 | if hasattr(fp, 'read'): | |
| 162 | header = numpy.fromfile(fp, BASIC_STRUCTURE, 1) |
|
162 | header = numpy.fromfile(fp, BASIC_STRUCTURE, 1) | |
| 163 | else: |
|
163 | else: | |
| 164 | header = numpy.fromstring(fp, BASIC_STRUCTURE, 1) |
|
164 | header = numpy.fromstring(fp, BASIC_STRUCTURE, 1) | |
| 165 | except Exception as e: |
|
165 | except Exception as e: | |
| 166 | print("BasicHeader: ") |
|
166 | print("BasicHeader: ") | |
| 167 | print(e) |
|
167 | print(e) | |
| 168 | return 0 |
|
168 | return 0 | |
| 169 |
|
169 | |||
| 170 | self.size = int(header['nSize'][0]) |
|
170 | self.size = int(header['nSize'][0]) | |
| 171 | self.version = int(header['nVersion'][0]) |
|
171 | self.version = int(header['nVersion'][0]) | |
| 172 | self.dataBlock = int(header['nDataBlockId'][0]) |
|
172 | self.dataBlock = int(header['nDataBlockId'][0]) | |
| 173 | self.utc = int(header['nUtime'][0]) |
|
173 | self.utc = int(header['nUtime'][0]) | |
| 174 | self.miliSecond = int(header['nMilsec'][0]) |
|
174 | self.miliSecond = int(header['nMilsec'][0]) | |
| 175 | self.timeZone = int(header['nTimezone'][0]) |
|
175 | self.timeZone = int(header['nTimezone'][0]) | |
| 176 | self.dstFlag = int(header['nDstflag'][0]) |
|
176 | self.dstFlag = int(header['nDstflag'][0]) | |
| 177 | self.errorCount = int(header['nErrorCount'][0]) |
|
177 | self.errorCount = int(header['nErrorCount'][0]) | |
| 178 |
|
178 | |||
| 179 | if self.size < 24: |
|
179 | if self.size < 24: | |
| 180 | return 0 |
|
180 | return 0 | |
| 181 |
|
181 | |||
| 182 | self.length = header.nbytes |
|
182 | self.length = header.nbytes | |
| 183 | return 1 |
|
183 | return 1 | |
| 184 |
|
184 | |||
| 185 | def write(self, fp): |
|
185 | def write(self, fp): | |
| 186 |
|
186 | |||
| 187 | headerTuple = (self.size, self.version, self.dataBlock, self.utc, |
|
187 | headerTuple = (self.size, self.version, self.dataBlock, self.utc, | |
| 188 | self.miliSecond, self.timeZone, self.dstFlag, self.errorCount) |
|
188 | self.miliSecond, self.timeZone, self.dstFlag, self.errorCount) | |
| 189 | header = numpy.array(headerTuple, BASIC_STRUCTURE) |
|
189 | header = numpy.array(headerTuple, BASIC_STRUCTURE) | |
| 190 | header.tofile(fp) |
|
190 | header.tofile(fp) | |
| 191 |
|
191 | |||
| 192 | return 1 |
|
192 | return 1 | |
| 193 |
|
193 | |||
| 194 | def get_ltc(self): |
|
194 | def get_ltc(self): | |
| 195 |
|
195 | |||
| 196 | return self.utc - self.timeZone * 60 |
|
196 | return self.utc - self.timeZone * 60 | |
| 197 |
|
197 | |||
| 198 | def set_ltc(self, value): |
|
198 | def set_ltc(self, value): | |
| 199 |
|
199 | |||
| 200 | self.utc = value + self.timeZone * 60 |
|
200 | self.utc = value + self.timeZone * 60 | |
| 201 |
|
201 | |||
| 202 | def get_datatime(self): |
|
202 | def get_datatime(self): | |
| 203 |
|
203 | |||
| 204 | return datetime.datetime.utcfromtimestamp(self.ltc) |
|
204 | return datetime.datetime.utcfromtimestamp(self.ltc) | |
| 205 |
|
205 | |||
| 206 | ltc = property(get_ltc, set_ltc) |
|
206 | ltc = property(get_ltc, set_ltc) | |
| 207 | datatime = property(get_datatime) |
|
207 | datatime = property(get_datatime) | |
| 208 |
|
208 | |||
| 209 |
|
209 | |||
| 210 | class SystemHeader(Header): |
|
210 | class SystemHeader(Header): | |
| 211 |
|
211 | |||
| 212 | size = None |
|
212 | size = None | |
| 213 | nSamples = None |
|
213 | nSamples = None | |
| 214 | nProfiles = None |
|
214 | nProfiles = None | |
| 215 | nChannels = None |
|
215 | nChannels = None | |
| 216 | adcResolution = None |
|
216 | adcResolution = None | |
| 217 | pciDioBusWidth = None |
|
217 | pciDioBusWidth = None | |
| 218 | structure = SYSTEM_STRUCTURE |
|
218 | structure = SYSTEM_STRUCTURE | |
| 219 |
|
219 | |||
| 220 | def __init__(self, nSamples=0, nProfiles=0, nChannels=0, adcResolution=14, pciDioBusWidth=0): |
|
220 | def __init__(self, nSamples=0, nProfiles=0, nChannels=0, adcResolution=14, pciDioBusWidth=0): | |
| 221 |
|
221 | |||
| 222 | self.size = 24 |
|
222 | self.size = 24 | |
| 223 | self.nSamples = nSamples |
|
223 | self.nSamples = nSamples | |
| 224 | self.nProfiles = nProfiles |
|
224 | self.nProfiles = nProfiles | |
| 225 | self.nChannels = nChannels |
|
225 | self.nChannels = nChannels | |
| 226 | self.adcResolution = adcResolution |
|
226 | self.adcResolution = adcResolution | |
| 227 | self.pciDioBusWidth = pciDioBusWidth |
|
227 | self.pciDioBusWidth = pciDioBusWidth | |
| 228 |
|
228 | |||
| 229 | def read(self, fp): |
|
229 | def read(self, fp): | |
| 230 | self.length = 0 |
|
230 | self.length = 0 | |
| 231 | try: |
|
231 | try: | |
| 232 | startFp = fp.tell() |
|
232 | startFp = fp.tell() | |
| 233 | except Exception as e: |
|
233 | except Exception as e: | |
| 234 | startFp = None |
|
234 | startFp = None | |
| 235 | pass |
|
235 | pass | |
| 236 |
|
236 | |||
| 237 | try: |
|
237 | try: | |
| 238 | if hasattr(fp, 'read'): |
|
238 | if hasattr(fp, 'read'): | |
| 239 | header = numpy.fromfile(fp, SYSTEM_STRUCTURE, 1) |
|
239 | header = numpy.fromfile(fp, SYSTEM_STRUCTURE, 1) | |
| 240 | else: |
|
240 | else: | |
| 241 | header = numpy.fromstring(fp, SYSTEM_STRUCTURE, 1) |
|
241 | header = numpy.fromstring(fp, SYSTEM_STRUCTURE, 1) | |
| 242 | except Exception as e: |
|
242 | except Exception as e: | |
| 243 | print("System Header: " + str(e)) |
|
243 | print("System Header: " + str(e)) | |
| 244 | return 0 |
|
244 | return 0 | |
| 245 |
|
245 | |||
| 246 | self.size = header['nSize'][0] |
|
246 | self.size = header['nSize'][0] | |
| 247 | self.nSamples = header['nNumSamples'][0] |
|
247 | self.nSamples = header['nNumSamples'][0] | |
| 248 | self.nProfiles = header['nNumProfiles'][0] |
|
248 | self.nProfiles = header['nNumProfiles'][0] | |
| 249 | self.nChannels = header['nNumChannels'][0] |
|
249 | self.nChannels = header['nNumChannels'][0] | |
| 250 | self.adcResolution = header['nADCResolution'][0] |
|
250 | self.adcResolution = header['nADCResolution'][0] | |
| 251 | self.pciDioBusWidth = header['nPCDIOBusWidth'][0] |
|
251 | self.pciDioBusWidth = header['nPCDIOBusWidth'][0] | |
| 252 |
|
252 | |||
| 253 | if startFp is not None: |
|
253 | if startFp is not None: | |
| 254 | endFp = self.size + startFp |
|
254 | endFp = self.size + startFp | |
| 255 |
|
255 | |||
| 256 | if fp.tell() > endFp: |
|
256 | if fp.tell() > endFp: | |
| 257 | sys.stderr.write( |
|
257 | sys.stderr.write( | |
| 258 | "Warning %s: Size value read from System Header is lower than it has to be\n" % fp.name) |
|
258 | "Warning %s: Size value read from System Header is lower than it has to be\n" % fp.name) | |
| 259 | return 0 |
|
259 | return 0 | |
| 260 |
|
260 | |||
| 261 | if fp.tell() < endFp: |
|
261 | if fp.tell() < endFp: | |
| 262 | sys.stderr.write( |
|
262 | sys.stderr.write( | |
| 263 | "Warning %s: Size value read from System Header size is greater than it has to be\n" % fp.name) |
|
263 | "Warning %s: Size value read from System Header size is greater than it has to be\n" % fp.name) | |
| 264 | return 0 |
|
264 | return 0 | |
| 265 |
|
265 | |||
| 266 | self.length = header.nbytes |
|
266 | self.length = header.nbytes | |
| 267 | return 1 |
|
267 | return 1 | |
| 268 |
|
268 | |||
| 269 | def write(self, fp): |
|
269 | def write(self, fp): | |
| 270 |
|
270 | |||
| 271 | headerTuple = (self.size, self.nSamples, self.nProfiles, |
|
271 | headerTuple = (self.size, self.nSamples, self.nProfiles, | |
| 272 | self.nChannels, self.adcResolution, self.pciDioBusWidth) |
|
272 | self.nChannels, self.adcResolution, self.pciDioBusWidth) | |
| 273 | header = numpy.array(headerTuple, SYSTEM_STRUCTURE) |
|
273 | header = numpy.array(headerTuple, SYSTEM_STRUCTURE) | |
| 274 | header.tofile(fp) |
|
274 | header.tofile(fp) | |
| 275 |
|
275 | |||
| 276 | return 1 |
|
276 | return 1 | |
| 277 |
|
277 | |||
| 278 |
|
278 | |||
| 279 | class RadarControllerHeader(Header): |
|
279 | class RadarControllerHeader(Header): | |
| 280 |
|
280 | |||
| 281 | expType = None |
|
281 | expType = None | |
| 282 | nTx = None |
|
282 | nTx = None | |
| 283 | ipp = None |
|
283 | ipp = None | |
| 284 | txA = None |
|
284 | txA = None | |
| 285 | txB = None |
|
285 | txB = None | |
| 286 | nWindows = None |
|
286 | nWindows = None | |
| 287 | numTaus = None |
|
287 | numTaus = None | |
| 288 | codeType = None |
|
288 | codeType = None | |
| 289 | line6Function = None |
|
289 | line6Function = None | |
| 290 | line5Function = None |
|
290 | line5Function = None | |
| 291 | fClock = None |
|
291 | fClock = None | |
| 292 | prePulseBefore = None |
|
292 | prePulseBefore = None | |
| 293 | prePulseAfter = None |
|
293 | prePulseAfter = None | |
| 294 | rangeIpp = None |
|
294 | rangeIpp = None | |
| 295 | rangeTxA = None |
|
295 | rangeTxA = None | |
| 296 | rangeTxB = None |
|
296 | rangeTxB = None | |
| 297 | structure = RADAR_STRUCTURE |
|
297 | structure = RADAR_STRUCTURE | |
| 298 | __size = None |
|
298 | __size = None | |
| 299 |
|
299 | |||
| 300 | def __init__(self, expType=2, nTx=1, |
|
300 | def __init__(self, expType=2, nTx=1, | |
| 301 | ipp=None, txA=0, txB=0, |
|
301 | ipp=None, txA=0, txB=0, | |
| 302 | nWindows=None, nHeights=None, firstHeight=None, deltaHeight=None, |
|
302 | nWindows=None, nHeights=None, firstHeight=None, deltaHeight=None, | |
| 303 | numTaus=0, line6Function=0, line5Function=0, fClock=None, |
|
303 | numTaus=0, line6Function=0, line5Function=0, fClock=None, | |
| 304 | prePulseBefore=0, prePulseAfter=0, |
|
304 | prePulseBefore=0, prePulseAfter=0, | |
| 305 | codeType=0, nCode=0, nBaud=0, code=[], |
|
305 | codeType=0, nCode=0, nBaud=0, code=[], | |
| 306 | flip1=0, flip2=0): |
|
306 | flip1=0, flip2=0): | |
| 307 |
|
307 | |||
| 308 | # self.size = 116 |
|
308 | # self.size = 116 | |
| 309 | self.expType = expType |
|
309 | self.expType = expType | |
| 310 | self.nTx = nTx |
|
310 | self.nTx = nTx | |
| 311 | self.ipp = ipp |
|
311 | self.ipp = ipp | |
| 312 | self.txA = txA |
|
312 | self.txA = txA | |
| 313 | self.txB = txB |
|
313 | self.txB = txB | |
| 314 | self.rangeIpp = ipp |
|
314 | self.rangeIpp = ipp | |
| 315 | self.rangeTxA = txA |
|
315 | self.rangeTxA = txA | |
| 316 | self.rangeTxB = txB |
|
316 | self.rangeTxB = txB | |
| 317 |
|
317 | |||
| 318 | self.nWindows = nWindows |
|
318 | self.nWindows = nWindows | |
| 319 | self.numTaus = numTaus |
|
319 | self.numTaus = numTaus | |
| 320 | self.codeType = codeType |
|
320 | self.codeType = codeType | |
| 321 | self.line6Function = line6Function |
|
321 | self.line6Function = line6Function | |
| 322 | self.line5Function = line5Function |
|
322 | self.line5Function = line5Function | |
| 323 | self.fClock = fClock |
|
323 | self.fClock = fClock | |
| 324 | self.prePulseBefore = prePulseBefore |
|
324 | self.prePulseBefore = prePulseBefore | |
| 325 | self.prePulseAfter = prePulseAfter |
|
325 | self.prePulseAfter = prePulseAfter | |
| 326 |
|
326 | |||
| 327 | self.nHeights = nHeights |
|
327 | self.nHeights = nHeights | |
| 328 | self.firstHeight = firstHeight |
|
328 | self.firstHeight = firstHeight | |
| 329 | self.deltaHeight = deltaHeight |
|
329 | self.deltaHeight = deltaHeight | |
| 330 | self.samplesWin = nHeights |
|
330 | self.samplesWin = nHeights | |
| 331 |
|
331 | |||
| 332 | self.nCode = nCode |
|
332 | self.nCode = nCode | |
| 333 | self.nBaud = nBaud |
|
333 | self.nBaud = nBaud | |
| 334 | self.code = code |
|
334 | self.code = code | |
| 335 | self.flip1 = flip1 |
|
335 | self.flip1 = flip1 | |
| 336 | self.flip2 = flip2 |
|
336 | self.flip2 = flip2 | |
| 337 |
|
337 | |||
| 338 | self.code_size = int(numpy.ceil(self.nBaud / 32.)) * self.nCode * 4 |
|
338 | self.code_size = int(numpy.ceil(self.nBaud / 32.)) * self.nCode * 4 | |
| 339 | # self.dynamic = numpy.array([],numpy.dtype('byte')) |
|
339 | # self.dynamic = numpy.array([],numpy.dtype('byte')) | |
| 340 |
|
340 | |||
| 341 | if self.fClock is None and self.deltaHeight is not None: |
|
341 | if self.fClock is None and self.deltaHeight is not None: | |
| 342 | self.fClock = 0.15 / (deltaHeight * 1e-6) # 0.15Km / (height * 1u) |
|
342 | self.fClock = 0.15 / (deltaHeight * 1e-6) # 0.15Km / (height * 1u) | |
| 343 |
|
343 | |||
| 344 | def read(self, fp): |
|
344 | def read(self, fp): | |
| 345 | self.length = 0 |
|
345 | self.length = 0 | |
| 346 | try: |
|
346 | try: | |
| 347 | startFp = fp.tell() |
|
347 | startFp = fp.tell() | |
| 348 | except Exception as e: |
|
348 | except Exception as e: | |
| 349 | startFp = None |
|
349 | startFp = None | |
| 350 | pass |
|
350 | pass | |
| 351 |
|
351 | |||
| 352 | try: |
|
352 | try: | |
| 353 | if hasattr(fp, 'read'): |
|
353 | if hasattr(fp, 'read'): | |
| 354 | header = numpy.fromfile(fp, RADAR_STRUCTURE, 1) |
|
354 | header = numpy.fromfile(fp, RADAR_STRUCTURE, 1) | |
| 355 | else: |
|
355 | else: | |
| 356 | header = numpy.fromstring(fp, RADAR_STRUCTURE, 1) |
|
356 | header = numpy.fromstring(fp, RADAR_STRUCTURE, 1) | |
| 357 | self.length += header.nbytes |
|
357 | self.length += header.nbytes | |
| 358 | except Exception as e: |
|
358 | except Exception as e: | |
| 359 | print("RadarControllerHeader: " + str(e)) |
|
359 | print("RadarControllerHeader: " + str(e)) | |
| 360 | return 0 |
|
360 | return 0 | |
| 361 |
|
361 | |||
| 362 | size = int(header['nSize'][0]) |
|
362 | size = int(header['nSize'][0]) | |
| 363 | self.expType = int(header['nExpType'][0]) |
|
363 | self.expType = int(header['nExpType'][0]) | |
| 364 | self.nTx = int(header['nNTx'][0]) |
|
364 | self.nTx = int(header['nNTx'][0]) | |
| 365 | self.ipp = float(header['fIpp'][0]) |
|
365 | self.ipp = float(header['fIpp'][0]) | |
|
|
366 | #print(self.ipp) | |||
| 366 | self.txA = float(header['fTxA'][0]) |
|
367 | self.txA = float(header['fTxA'][0]) | |
| 367 | self.txB = float(header['fTxB'][0]) |
|
368 | self.txB = float(header['fTxB'][0]) | |
| 368 | self.nWindows = int(header['nNumWindows'][0]) |
|
369 | self.nWindows = int(header['nNumWindows'][0]) | |
| 369 | self.numTaus = int(header['nNumTaus'][0]) |
|
370 | self.numTaus = int(header['nNumTaus'][0]) | |
| 370 | self.codeType = int(header['nCodeType'][0]) |
|
371 | self.codeType = int(header['nCodeType'][0]) | |
| 371 | self.line6Function = int(header['nLine6Function'][0]) |
|
372 | self.line6Function = int(header['nLine6Function'][0]) | |
| 372 | self.line5Function = int(header['nLine5Function'][0]) |
|
373 | self.line5Function = int(header['nLine5Function'][0]) | |
| 373 | self.fClock = float(header['fClock'][0]) |
|
374 | self.fClock = float(header['fClock'][0]) | |
| 374 | self.prePulseBefore = int(header['nPrePulseBefore'][0]) |
|
375 | self.prePulseBefore = int(header['nPrePulseBefore'][0]) | |
| 375 | self.prePulseAfter = int(header['nPrePulseAfter'][0]) |
|
376 | self.prePulseAfter = int(header['nPrePulseAfter'][0]) | |
| 376 | self.rangeIpp = header['sRangeIPP'][0] |
|
377 | self.rangeIpp = header['sRangeIPP'][0] | |
| 377 | self.rangeTxA = header['sRangeTxA'][0] |
|
378 | self.rangeTxA = header['sRangeTxA'][0] | |
| 378 | self.rangeTxB = header['sRangeTxB'][0] |
|
379 | self.rangeTxB = header['sRangeTxB'][0] | |
| 379 |
|
380 | |||
| 380 | try: |
|
381 | try: | |
| 381 | if hasattr(fp, 'read'): |
|
382 | if hasattr(fp, 'read'): | |
| 382 | samplingWindow = numpy.fromfile( |
|
383 | samplingWindow = numpy.fromfile( | |
| 383 | fp, SAMPLING_STRUCTURE, self.nWindows) |
|
384 | fp, SAMPLING_STRUCTURE, self.nWindows) | |
| 384 | else: |
|
385 | else: | |
| 385 | samplingWindow = numpy.fromstring( |
|
386 | samplingWindow = numpy.fromstring( | |
| 386 | fp[self.length:], SAMPLING_STRUCTURE, self.nWindows) |
|
387 | fp[self.length:], SAMPLING_STRUCTURE, self.nWindows) | |
| 387 | self.length += samplingWindow.nbytes |
|
388 | self.length += samplingWindow.nbytes | |
| 388 | except Exception as e: |
|
389 | except Exception as e: | |
| 389 | print("RadarControllerHeader: " + str(e)) |
|
390 | print("RadarControllerHeader: " + str(e)) | |
| 390 | return 0 |
|
391 | return 0 | |
| 391 | self.nHeights = int(numpy.sum(samplingWindow['nsa'])) |
|
392 | self.nHeights = int(numpy.sum(samplingWindow['nsa'])) | |
| 392 | self.firstHeight = samplingWindow['h0'] |
|
393 | self.firstHeight = samplingWindow['h0'] | |
| 393 | self.deltaHeight = samplingWindow['dh'] |
|
394 | self.deltaHeight = samplingWindow['dh'] | |
| 394 | self.samplesWin = samplingWindow['nsa'] |
|
395 | self.samplesWin = samplingWindow['nsa'] | |
| 395 |
|
396 | |||
| 396 | try: |
|
397 | try: | |
| 397 | if hasattr(fp, 'read'): |
|
398 | if hasattr(fp, 'read'): | |
| 398 | self.Taus = numpy.fromfile(fp, '<f4', self.numTaus) |
|
399 | self.Taus = numpy.fromfile(fp, '<f4', self.numTaus) | |
| 399 | else: |
|
400 | else: | |
| 400 | self.Taus = numpy.fromstring( |
|
401 | self.Taus = numpy.fromstring( | |
| 401 | fp[self.length:], '<f4', self.numTaus) |
|
402 | fp[self.length:], '<f4', self.numTaus) | |
| 402 | self.length += self.Taus.nbytes |
|
403 | self.length += self.Taus.nbytes | |
| 403 | except Exception as e: |
|
404 | except Exception as e: | |
| 404 | print("RadarControllerHeader: " + str(e)) |
|
405 | print("RadarControllerHeader: " + str(e)) | |
| 405 | return 0 |
|
406 | return 0 | |
| 406 |
|
407 | |||
| 407 | self.code_size = 0 |
|
408 | self.code_size = 0 | |
| 408 | if self.codeType != 0: |
|
409 | if self.codeType != 0: | |
| 409 |
|
410 | |||
| 410 | try: |
|
411 | try: | |
| 411 | if hasattr(fp, 'read'): |
|
412 | if hasattr(fp, 'read'): | |
| 412 | self.nCode = numpy.fromfile(fp, '<u4', 1)[0] |
|
413 | self.nCode = numpy.fromfile(fp, '<u4', 1)[0] | |
| 413 | self.length += self.nCode.nbytes |
|
414 | self.length += self.nCode.nbytes | |
| 414 | self.nBaud = numpy.fromfile(fp, '<u4', 1)[0] |
|
415 | self.nBaud = numpy.fromfile(fp, '<u4', 1)[0] | |
| 415 | self.length += self.nBaud.nbytes |
|
416 | self.length += self.nBaud.nbytes | |
| 416 | else: |
|
417 | else: | |
| 417 | self.nCode = numpy.fromstring( |
|
418 | self.nCode = numpy.fromstring( | |
| 418 | fp[self.length:], '<u4', 1)[0] |
|
419 | fp[self.length:], '<u4', 1)[0] | |
| 419 | self.length += self.nCode.nbytes |
|
420 | self.length += self.nCode.nbytes | |
| 420 | self.nBaud = numpy.fromstring( |
|
421 | self.nBaud = numpy.fromstring( | |
| 421 | fp[self.length:], '<u4', 1)[0] |
|
422 | fp[self.length:], '<u4', 1)[0] | |
| 422 | self.length += self.nBaud.nbytes |
|
423 | self.length += self.nBaud.nbytes | |
| 423 | except Exception as e: |
|
424 | except Exception as e: | |
| 424 | print("RadarControllerHeader: " + str(e)) |
|
425 | print("RadarControllerHeader: " + str(e)) | |
| 425 | return 0 |
|
426 | return 0 | |
| 426 | code = numpy.empty([self.nCode, self.nBaud], dtype='i1') |
|
427 | code = numpy.empty([self.nCode, self.nBaud], dtype='i1') | |
| 427 |
|
428 | |||
| 428 | for ic in range(self.nCode): |
|
429 | for ic in range(self.nCode): | |
| 429 | try: |
|
430 | try: | |
| 430 | if hasattr(fp, 'read'): |
|
431 | if hasattr(fp, 'read'): | |
| 431 | temp = numpy.fromfile(fp, 'u4', int( |
|
432 | temp = numpy.fromfile(fp, 'u4', int( | |
| 432 | numpy.ceil(self.nBaud / 32.))) |
|
433 | numpy.ceil(self.nBaud / 32.))) | |
| 433 | else: |
|
434 | else: | |
| 434 | temp = numpy.fromstring( |
|
435 | temp = numpy.fromstring( | |
| 435 | fp, 'u4', int(numpy.ceil(self.nBaud / 32.))) |
|
436 | fp, 'u4', int(numpy.ceil(self.nBaud / 32.))) | |
| 436 | self.length += temp.nbytes |
|
437 | self.length += temp.nbytes | |
| 437 | except Exception as e: |
|
438 | except Exception as e: | |
| 438 | print("RadarControllerHeader: " + str(e)) |
|
439 | print("RadarControllerHeader: " + str(e)) | |
| 439 | return 0 |
|
440 | return 0 | |
| 440 |
|
441 | |||
| 441 | for ib in range(self.nBaud - 1, -1, -1): |
|
442 | for ib in range(self.nBaud - 1, -1, -1): | |
| 442 | code[ic, ib] = temp[int(ib / 32)] % 2 |
|
443 | code[ic, ib] = temp[int(ib / 32)] % 2 | |
| 443 | temp[int(ib / 32)] = temp[int(ib / 32)] / 2 |
|
444 | temp[int(ib / 32)] = temp[int(ib / 32)] / 2 | |
| 444 |
|
445 | |||
| 445 | self.code = 2.0 * code - 1.0 |
|
446 | self.code = 2.0 * code - 1.0 | |
| 446 | self.code_size = int(numpy.ceil(self.nBaud / 32.)) * self.nCode * 4 |
|
447 | self.code_size = int(numpy.ceil(self.nBaud / 32.)) * self.nCode * 4 | |
| 447 |
|
448 | |||
| 448 | # if self.line5Function == RCfunction.FLIP: |
|
449 | # if self.line5Function == RCfunction.FLIP: | |
| 449 | # self.flip1 = numpy.fromfile(fp,'<u4',1) |
|
450 | # self.flip1 = numpy.fromfile(fp,'<u4',1) | |
| 450 | # |
|
451 | # | |
| 451 | # if self.line6Function == RCfunction.FLIP: |
|
452 | # if self.line6Function == RCfunction.FLIP: | |
| 452 | # self.flip2 = numpy.fromfile(fp,'<u4',1) |
|
453 | # self.flip2 = numpy.fromfile(fp,'<u4',1) | |
| 453 | if startFp is not None: |
|
454 | if startFp is not None: | |
| 454 | endFp = size + startFp |
|
455 | endFp = size + startFp | |
| 455 |
|
456 | |||
| 456 | if fp.tell() != endFp: |
|
457 | if fp.tell() != endFp: | |
| 457 | # fp.seek(endFp) |
|
458 | # fp.seek(endFp) | |
| 458 | print("%s: Radar Controller Header size is not consistent: from data [%d] != from header field [%d]" % (fp.name, fp.tell() - startFp, size)) |
|
459 | print("%s: Radar Controller Header size is not consistent: from data [%d] != from header field [%d]" % (fp.name, fp.tell() - startFp, size)) | |
| 459 | # return 0 |
|
460 | # return 0 | |
| 460 |
|
461 | |||
| 461 | if fp.tell() > endFp: |
|
462 | if fp.tell() > endFp: | |
| 462 | sys.stderr.write( |
|
463 | sys.stderr.write( | |
| 463 | "Warning %s: Size value read from Radar Controller header is lower than it has to be\n" % fp.name) |
|
464 | "Warning %s: Size value read from Radar Controller header is lower than it has to be\n" % fp.name) | |
| 464 | # return 0 |
|
465 | # return 0 | |
| 465 |
|
466 | |||
| 466 | if fp.tell() < endFp: |
|
467 | if fp.tell() < endFp: | |
| 467 | sys.stderr.write( |
|
468 | sys.stderr.write( | |
| 468 | "Warning %s: Size value read from Radar Controller header is greater than it has to be\n" % fp.name) |
|
469 | "Warning %s: Size value read from Radar Controller header is greater than it has to be\n" % fp.name) | |
| 469 |
|
470 | |||
| 470 | return 1 |
|
471 | return 1 | |
| 471 |
|
472 | |||
| 472 | def write(self, fp): |
|
473 | def write(self, fp): | |
| 473 |
|
474 | |||
| 474 | headerTuple = (self.size, |
|
475 | headerTuple = (self.size, | |
| 475 | self.expType, |
|
476 | self.expType, | |
| 476 | self.nTx, |
|
477 | self.nTx, | |
| 477 | self.ipp, |
|
478 | self.ipp, | |
| 478 | self.txA, |
|
479 | self.txA, | |
| 479 | self.txB, |
|
480 | self.txB, | |
| 480 | self.nWindows, |
|
481 | self.nWindows, | |
| 481 | self.numTaus, |
|
482 | self.numTaus, | |
| 482 | self.codeType, |
|
483 | self.codeType, | |
| 483 | self.line6Function, |
|
484 | self.line6Function, | |
| 484 | self.line5Function, |
|
485 | self.line5Function, | |
| 485 | self.fClock, |
|
486 | self.fClock, | |
| 486 | self.prePulseBefore, |
|
487 | self.prePulseBefore, | |
| 487 | self.prePulseAfter, |
|
488 | self.prePulseAfter, | |
| 488 | self.rangeIpp, |
|
489 | self.rangeIpp, | |
| 489 | self.rangeTxA, |
|
490 | self.rangeTxA, | |
| 490 | self.rangeTxB) |
|
491 | self.rangeTxB) | |
| 491 |
|
492 | |||
| 492 | header = numpy.array(headerTuple, RADAR_STRUCTURE) |
|
493 | header = numpy.array(headerTuple, RADAR_STRUCTURE) | |
| 493 | header.tofile(fp) |
|
494 | header.tofile(fp) | |
| 494 |
|
495 | |||
| 495 | sampleWindowTuple = ( |
|
496 | sampleWindowTuple = ( | |
| 496 | self.firstHeight, self.deltaHeight, self.samplesWin) |
|
497 | self.firstHeight, self.deltaHeight, self.samplesWin) | |
| 497 | samplingWindow = numpy.array(sampleWindowTuple, SAMPLING_STRUCTURE) |
|
498 | samplingWindow = numpy.array(sampleWindowTuple, SAMPLING_STRUCTURE) | |
| 498 | samplingWindow.tofile(fp) |
|
499 | samplingWindow.tofile(fp) | |
| 499 |
|
500 | |||
| 500 | if self.numTaus > 0: |
|
501 | if self.numTaus > 0: | |
| 501 | self.Taus.tofile(fp) |
|
502 | self.Taus.tofile(fp) | |
| 502 |
|
503 | |||
| 503 | if self.codeType != 0: |
|
504 | if self.codeType != 0: | |
| 504 | nCode = numpy.array(self.nCode, '<u4') |
|
505 | nCode = numpy.array(self.nCode, '<u4') | |
| 505 | nCode.tofile(fp) |
|
506 | nCode.tofile(fp) | |
| 506 | nBaud = numpy.array(self.nBaud, '<u4') |
|
507 | nBaud = numpy.array(self.nBaud, '<u4') | |
| 507 | nBaud.tofile(fp) |
|
508 | nBaud.tofile(fp) | |
| 508 | code1 = (self.code + 1.0) / 2. |
|
509 | code1 = (self.code + 1.0) / 2. | |
| 509 |
|
510 | |||
| 510 | for ic in range(self.nCode): |
|
511 | for ic in range(self.nCode): | |
| 511 | tempx = numpy.zeros(int(numpy.ceil(self.nBaud / 32.))) |
|
512 | tempx = numpy.zeros(int(numpy.ceil(self.nBaud / 32.))) | |
| 512 | start = 0 |
|
513 | start = 0 | |
| 513 | end = 32 |
|
514 | end = 32 | |
| 514 | for i in range(len(tempx)): |
|
515 | for i in range(len(tempx)): | |
| 515 | code_selected = code1[ic, start:end] |
|
516 | code_selected = code1[ic, start:end] | |
| 516 | for j in range(len(code_selected) - 1, -1, -1): |
|
517 | for j in range(len(code_selected) - 1, -1, -1): | |
| 517 | if code_selected[j] == 1: |
|
518 | if code_selected[j] == 1: | |
| 518 | tempx[i] = tempx[i] + \ |
|
519 | tempx[i] = tempx[i] + \ | |
| 519 | 2**(len(code_selected) - 1 - j) |
|
520 | 2**(len(code_selected) - 1 - j) | |
| 520 | start = start + 32 |
|
521 | start = start + 32 | |
| 521 | end = end + 32 |
|
522 | end = end + 32 | |
| 522 |
|
523 | |||
| 523 | tempx = tempx.astype('u4') |
|
524 | tempx = tempx.astype('u4') | |
| 524 | tempx.tofile(fp) |
|
525 | tempx.tofile(fp) | |
| 525 |
|
526 | |||
| 526 | # if self.line5Function == RCfunction.FLIP: |
|
527 | # if self.line5Function == RCfunction.FLIP: | |
| 527 | # self.flip1.tofile(fp) |
|
528 | # self.flip1.tofile(fp) | |
| 528 | # |
|
529 | # | |
| 529 | # if self.line6Function == RCfunction.FLIP: |
|
530 | # if self.line6Function == RCfunction.FLIP: | |
| 530 | # self.flip2.tofile(fp) |
|
531 | # self.flip2.tofile(fp) | |
| 531 |
|
532 | |||
| 532 | return 1 |
|
533 | return 1 | |
| 533 |
|
534 | |||
| 534 | def get_ippSeconds(self): |
|
535 | def get_ippSeconds(self): | |
| 535 | ''' |
|
536 | ''' | |
| 536 | ''' |
|
537 | ''' | |
|
|
538 | ||||
| 537 | ippSeconds = 2.0 * 1000 * self.ipp / SPEED_OF_LIGHT |
|
539 | ippSeconds = 2.0 * 1000 * self.ipp / SPEED_OF_LIGHT | |
| 538 |
|
540 | |||
| 539 | return ippSeconds |
|
541 | return ippSeconds | |
| 540 |
|
542 | |||
| 541 | def set_ippSeconds(self, ippSeconds): |
|
543 | def set_ippSeconds(self, ippSeconds): | |
| 542 | ''' |
|
544 | ''' | |
| 543 | ''' |
|
545 | ''' | |
| 544 |
|
546 | |||
| 545 | self.ipp = ippSeconds * SPEED_OF_LIGHT / (2.0 * 1000) |
|
547 | self.ipp = ippSeconds * SPEED_OF_LIGHT / (2.0 * 1000) | |
| 546 |
|
548 | |||
| 547 | return |
|
549 | return | |
| 548 |
|
550 | |||
| 549 | def get_size(self): |
|
551 | def get_size(self): | |
| 550 |
|
552 | |||
| 551 | self.__size = 116 + 12 * self.nWindows + 4 * self.numTaus |
|
553 | self.__size = 116 + 12 * self.nWindows + 4 * self.numTaus | |
| 552 |
|
554 | |||
| 553 | if self.codeType != 0: |
|
555 | if self.codeType != 0: | |
| 554 | self.__size += 4 + 4 + 4 * self.nCode * \ |
|
556 | self.__size += 4 + 4 + 4 * self.nCode * \ | |
| 555 | numpy.ceil(self.nBaud / 32.) |
|
557 | numpy.ceil(self.nBaud / 32.) | |
| 556 |
|
558 | |||
| 557 | return self.__size |
|
559 | return self.__size | |
| 558 |
|
560 | |||
| 559 | def set_size(self, value): |
|
561 | def set_size(self, value): | |
| 560 |
|
562 | |||
| 561 | raise IOError("size is a property and it cannot be set, just read") |
|
563 | raise IOError("size is a property and it cannot be set, just read") | |
| 562 |
|
564 | |||
| 563 | return |
|
565 | return | |
| 564 |
|
566 | |||
| 565 | ippSeconds = property(get_ippSeconds, set_ippSeconds) |
|
567 | ippSeconds = property(get_ippSeconds, set_ippSeconds) | |
| 566 | size = property(get_size, set_size) |
|
568 | size = property(get_size, set_size) | |
| 567 |
|
569 | |||
| 568 |
|
570 | |||
| 569 | class ProcessingHeader(Header): |
|
571 | class ProcessingHeader(Header): | |
| 570 |
|
572 | |||
| 571 | # size = None |
|
573 | # size = None | |
| 572 | dtype = None |
|
574 | dtype = None | |
| 573 | blockSize = None |
|
575 | blockSize = None | |
| 574 | profilesPerBlock = None |
|
576 | profilesPerBlock = None | |
| 575 | dataBlocksPerFile = None |
|
577 | dataBlocksPerFile = None | |
| 576 | nWindows = None |
|
578 | nWindows = None | |
| 577 | processFlags = None |
|
579 | processFlags = None | |
| 578 | nCohInt = None |
|
580 | nCohInt = None | |
| 579 | nIncohInt = None |
|
581 | nIncohInt = None | |
| 580 | totalSpectra = None |
|
582 | totalSpectra = None | |
| 581 | structure = PROCESSING_STRUCTURE |
|
583 | structure = PROCESSING_STRUCTURE | |
| 582 | flag_dc = None |
|
584 | flag_dc = None | |
| 583 | flag_cspc = None |
|
585 | flag_cspc = None | |
| 584 |
|
586 | |||
| 585 | def __init__(self, dtype=0, blockSize=0, profilesPerBlock=0, dataBlocksPerFile=0, nWindows=0, processFlags=0, nCohInt=0, |
|
587 | def __init__(self, dtype=0, blockSize=0, profilesPerBlock=0, dataBlocksPerFile=0, nWindows=0, processFlags=0, nCohInt=0, | |
| 586 | nIncohInt=0, totalSpectra=0, nHeights=0, firstHeight=0, deltaHeight=0, samplesWin=0, spectraComb=0, nCode=0, |
|
588 | nIncohInt=0, totalSpectra=0, nHeights=0, firstHeight=0, deltaHeight=0, samplesWin=0, spectraComb=0, nCode=0, | |
| 587 | code=0, nBaud=None, shif_fft=False, flag_dc=False, flag_cspc=False, flag_decode=False, flag_deflip=False |
|
589 | code=0, nBaud=None, shif_fft=False, flag_dc=False, flag_cspc=False, flag_decode=False, flag_deflip=False | |
| 588 | ): |
|
590 | ): | |
| 589 |
|
591 | |||
| 590 | # self.size = 0 |
|
592 | # self.size = 0 | |
| 591 | self.dtype = dtype |
|
593 | self.dtype = dtype | |
| 592 | self.blockSize = blockSize |
|
594 | self.blockSize = blockSize | |
| 593 | self.profilesPerBlock = 0 |
|
595 | self.profilesPerBlock = 0 | |
| 594 | self.dataBlocksPerFile = 0 |
|
596 | self.dataBlocksPerFile = 0 | |
| 595 | self.nWindows = 0 |
|
597 | self.nWindows = 0 | |
| 596 | self.processFlags = 0 |
|
598 | self.processFlags = 0 | |
| 597 | self.nCohInt = 0 |
|
599 | self.nCohInt = 0 | |
| 598 | self.nIncohInt = 0 |
|
600 | self.nIncohInt = 0 | |
| 599 | self.totalSpectra = 0 |
|
601 | self.totalSpectra = 0 | |
| 600 |
|
602 | |||
| 601 | self.nHeights = 0 |
|
603 | self.nHeights = 0 | |
| 602 | self.firstHeight = 0 |
|
604 | self.firstHeight = 0 | |
| 603 | self.deltaHeight = 0 |
|
605 | self.deltaHeight = 0 | |
| 604 | self.samplesWin = 0 |
|
606 | self.samplesWin = 0 | |
| 605 | self.spectraComb = 0 |
|
607 | self.spectraComb = 0 | |
| 606 | self.nCode = None |
|
608 | self.nCode = None | |
| 607 | self.code = None |
|
609 | self.code = None | |
| 608 | self.nBaud = None |
|
610 | self.nBaud = None | |
| 609 |
|
611 | |||
| 610 | self.shif_fft = False |
|
612 | self.shif_fft = False | |
| 611 | self.flag_dc = False |
|
613 | self.flag_dc = False | |
| 612 | self.flag_cspc = False |
|
614 | self.flag_cspc = False | |
| 613 | self.flag_decode = False |
|
615 | self.flag_decode = False | |
| 614 | self.flag_deflip = False |
|
616 | self.flag_deflip = False | |
| 615 | self.length = 0 |
|
617 | self.length = 0 | |
| 616 |
|
618 | |||
| 617 | def read(self, fp): |
|
619 | def read(self, fp): | |
| 618 | self.length = 0 |
|
620 | self.length = 0 | |
| 619 | try: |
|
621 | try: | |
| 620 | startFp = fp.tell() |
|
622 | startFp = fp.tell() | |
| 621 | except Exception as e: |
|
623 | except Exception as e: | |
| 622 | startFp = None |
|
624 | startFp = None | |
| 623 | pass |
|
625 | pass | |
| 624 |
|
626 | |||
| 625 | try: |
|
627 | try: | |
| 626 | if hasattr(fp, 'read'): |
|
628 | if hasattr(fp, 'read'): | |
| 627 | header = numpy.fromfile(fp, PROCESSING_STRUCTURE, 1) |
|
629 | header = numpy.fromfile(fp, PROCESSING_STRUCTURE, 1) | |
| 628 | else: |
|
630 | else: | |
| 629 | header = numpy.fromstring(fp, PROCESSING_STRUCTURE, 1) |
|
631 | header = numpy.fromstring(fp, PROCESSING_STRUCTURE, 1) | |
| 630 | self.length += header.nbytes |
|
632 | self.length += header.nbytes | |
| 631 | except Exception as e: |
|
633 | except Exception as e: | |
| 632 | print("ProcessingHeader: " + str(e)) |
|
634 | print("ProcessingHeader: " + str(e)) | |
| 633 | return 0 |
|
635 | return 0 | |
| 634 |
|
636 | |||
| 635 | size = int(header['nSize'][0]) |
|
637 | size = int(header['nSize'][0]) | |
| 636 | self.dtype = int(header['nDataType'][0]) |
|
638 | self.dtype = int(header['nDataType'][0]) | |
| 637 | self.blockSize = int(header['nSizeOfDataBlock'][0]) |
|
639 | self.blockSize = int(header['nSizeOfDataBlock'][0]) | |
| 638 | self.profilesPerBlock = int(header['nProfilesperBlock'][0]) |
|
640 | self.profilesPerBlock = int(header['nProfilesperBlock'][0]) | |
| 639 | self.dataBlocksPerFile = int(header['nDataBlocksperFile'][0]) |
|
641 | self.dataBlocksPerFile = int(header['nDataBlocksperFile'][0]) | |
| 640 | self.nWindows = int(header['nNumWindows'][0]) |
|
642 | self.nWindows = int(header['nNumWindows'][0]) | |
| 641 | self.processFlags = header['nProcessFlags'] |
|
643 | self.processFlags = header['nProcessFlags'] | |
| 642 | self.nCohInt = int(header['nCoherentIntegrations'][0]) |
|
644 | self.nCohInt = int(header['nCoherentIntegrations'][0]) | |
|
|
645 | ||||
| 643 | self.nIncohInt = int(header['nIncoherentIntegrations'][0]) |
|
646 | self.nIncohInt = int(header['nIncoherentIntegrations'][0]) | |
| 644 | self.totalSpectra = int(header['nTotalSpectra'][0]) |
|
647 | self.totalSpectra = int(header['nTotalSpectra'][0]) | |
| 645 |
|
648 | |||
| 646 | try: |
|
649 | try: | |
| 647 | if hasattr(fp, 'read'): |
|
650 | if hasattr(fp, 'read'): | |
| 648 | samplingWindow = numpy.fromfile( |
|
651 | samplingWindow = numpy.fromfile( | |
| 649 | fp, SAMPLING_STRUCTURE, self.nWindows) |
|
652 | fp, SAMPLING_STRUCTURE, self.nWindows) | |
| 650 | else: |
|
653 | else: | |
| 651 | samplingWindow = numpy.fromstring( |
|
654 | samplingWindow = numpy.fromstring( | |
| 652 | fp[self.length:], SAMPLING_STRUCTURE, self.nWindows) |
|
655 | fp[self.length:], SAMPLING_STRUCTURE, self.nWindows) | |
| 653 | self.length += samplingWindow.nbytes |
|
656 | self.length += samplingWindow.nbytes | |
| 654 | except Exception as e: |
|
657 | except Exception as e: | |
| 655 | print("ProcessingHeader: " + str(e)) |
|
658 | print("ProcessingHeader: " + str(e)) | |
| 656 | return 0 |
|
659 | return 0 | |
| 657 |
|
660 | |||
| 658 | self.nHeights = int(numpy.sum(samplingWindow['nsa'])) |
|
661 | self.nHeights = int(numpy.sum(samplingWindow['nsa'])) | |
| 659 | self.firstHeight = float(samplingWindow['h0'][0]) |
|
662 | self.firstHeight = float(samplingWindow['h0'][0]) | |
| 660 | self.deltaHeight = float(samplingWindow['dh'][0]) |
|
663 | self.deltaHeight = float(samplingWindow['dh'][0]) | |
| 661 | self.samplesWin = samplingWindow['nsa'][0] |
|
664 | self.samplesWin = samplingWindow['nsa'][0] | |
| 662 |
|
665 | |||
| 663 | try: |
|
666 | try: | |
| 664 | if hasattr(fp, 'read'): |
|
667 | if hasattr(fp, 'read'): | |
| 665 | self.spectraComb = numpy.fromfile( |
|
668 | self.spectraComb = numpy.fromfile( | |
| 666 | fp, 'u1', 2 * self.totalSpectra) |
|
669 | fp, 'u1', 2 * self.totalSpectra) | |
| 667 | else: |
|
670 | else: | |
| 668 | self.spectraComb = numpy.fromstring( |
|
671 | self.spectraComb = numpy.fromstring( | |
| 669 | fp[self.length:], 'u1', 2 * self.totalSpectra) |
|
672 | fp[self.length:], 'u1', 2 * self.totalSpectra) | |
| 670 | self.length += self.spectraComb.nbytes |
|
673 | self.length += self.spectraComb.nbytes | |
| 671 | except Exception as e: |
|
674 | except Exception as e: | |
| 672 | print("ProcessingHeader: " + str(e)) |
|
675 | print("ProcessingHeader: " + str(e)) | |
| 673 | return 0 |
|
676 | return 0 | |
| 674 |
|
677 | |||
| 675 | if ((self.processFlags & PROCFLAG.DEFINE_PROCESS_CODE) == PROCFLAG.DEFINE_PROCESS_CODE): |
|
678 | if ((self.processFlags & PROCFLAG.DEFINE_PROCESS_CODE) == PROCFLAG.DEFINE_PROCESS_CODE): | |
| 676 | self.nCode = int(numpy.fromfile(fp, '<u4', 1)) |
|
679 | self.nCode = int(numpy.fromfile(fp, '<u4', 1)) | |
| 677 | self.nBaud = int(numpy.fromfile(fp, '<u4', 1)) |
|
680 | self.nBaud = int(numpy.fromfile(fp, '<u4', 1)) | |
| 678 | self.code = numpy.fromfile( |
|
681 | self.code = numpy.fromfile( | |
| 679 | fp, '<f4', self.nCode * self.nBaud).reshape(self.nCode, self.nBaud) |
|
682 | fp, '<f4', self.nCode * self.nBaud).reshape(self.nCode, self.nBaud) | |
| 680 |
|
683 | |||
| 681 | if ((self.processFlags & PROCFLAG.EXP_NAME_ESP) == PROCFLAG.EXP_NAME_ESP): |
|
684 | if ((self.processFlags & PROCFLAG.EXP_NAME_ESP) == PROCFLAG.EXP_NAME_ESP): | |
| 682 | exp_name_len = int(numpy.fromfile(fp, '<u4', 1)) |
|
685 | exp_name_len = int(numpy.fromfile(fp, '<u4', 1)) | |
| 683 | exp_name = numpy.fromfile(fp, 'u1', exp_name_len + 1) |
|
686 | exp_name = numpy.fromfile(fp, 'u1', exp_name_len + 1) | |
| 684 |
|
687 | |||
| 685 | if ((self.processFlags & PROCFLAG.SHIFT_FFT_DATA) == PROCFLAG.SHIFT_FFT_DATA): |
|
688 | if ((self.processFlags & PROCFLAG.SHIFT_FFT_DATA) == PROCFLAG.SHIFT_FFT_DATA): | |
| 686 | self.shif_fft = True |
|
689 | self.shif_fft = True | |
| 687 | else: |
|
690 | else: | |
| 688 | self.shif_fft = False |
|
691 | self.shif_fft = False | |
| 689 |
|
692 | |||
| 690 | if ((self.processFlags & PROCFLAG.SAVE_CHANNELS_DC) == PROCFLAG.SAVE_CHANNELS_DC): |
|
693 | if ((self.processFlags & PROCFLAG.SAVE_CHANNELS_DC) == PROCFLAG.SAVE_CHANNELS_DC): | |
| 691 | self.flag_dc = True |
|
694 | self.flag_dc = True | |
| 692 | else: |
|
695 | else: | |
| 693 | self.flag_dc = False |
|
696 | self.flag_dc = False | |
| 694 |
|
697 | |||
| 695 | if ((self.processFlags & PROCFLAG.DECODE_DATA) == PROCFLAG.DECODE_DATA): |
|
698 | if ((self.processFlags & PROCFLAG.DECODE_DATA) == PROCFLAG.DECODE_DATA): | |
| 696 | self.flag_decode = True |
|
699 | self.flag_decode = True | |
| 697 | else: |
|
700 | else: | |
| 698 | self.flag_decode = False |
|
701 | self.flag_decode = False | |
| 699 |
|
702 | |||
| 700 | if ((self.processFlags & PROCFLAG.DEFLIP_DATA) == PROCFLAG.DEFLIP_DATA): |
|
703 | if ((self.processFlags & PROCFLAG.DEFLIP_DATA) == PROCFLAG.DEFLIP_DATA): | |
| 701 | self.flag_deflip = True |
|
704 | self.flag_deflip = True | |
| 702 | else: |
|
705 | else: | |
| 703 | self.flag_deflip = False |
|
706 | self.flag_deflip = False | |
| 704 |
|
707 | |||
| 705 | nChannels = 0 |
|
708 | nChannels = 0 | |
| 706 | nPairs = 0 |
|
709 | nPairs = 0 | |
| 707 | pairList = [] |
|
710 | pairList = [] | |
| 708 |
|
711 | |||
| 709 | for i in range(0, self.totalSpectra * 2, 2): |
|
712 | for i in range(0, self.totalSpectra * 2, 2): | |
| 710 | if self.spectraComb[i] == self.spectraComb[i + 1]: |
|
713 | if self.spectraComb[i] == self.spectraComb[i + 1]: | |
| 711 | nChannels = nChannels + 1 # par de canales iguales |
|
714 | nChannels = nChannels + 1 # par de canales iguales | |
| 712 | else: |
|
715 | else: | |
| 713 | nPairs = nPairs + 1 # par de canales diferentes |
|
716 | nPairs = nPairs + 1 # par de canales diferentes | |
| 714 | pairList.append((self.spectraComb[i], self.spectraComb[i + 1])) |
|
717 | pairList.append((self.spectraComb[i], self.spectraComb[i + 1])) | |
| 715 |
|
718 | |||
| 716 | self.flag_cspc = False |
|
719 | self.flag_cspc = False | |
| 717 | if nPairs > 0: |
|
720 | if nPairs > 0: | |
| 718 | self.flag_cspc = True |
|
721 | self.flag_cspc = True | |
| 719 |
|
722 | |||
| 720 | if startFp is not None: |
|
723 | if startFp is not None: | |
| 721 | endFp = size + startFp |
|
724 | endFp = size + startFp | |
| 722 | if fp.tell() > endFp: |
|
725 | if fp.tell() > endFp: | |
| 723 | sys.stderr.write( |
|
726 | sys.stderr.write( | |
| 724 | "Warning: Processing header size is lower than it has to be") |
|
727 | "Warning: Processing header size is lower than it has to be") | |
| 725 | return 0 |
|
728 | return 0 | |
| 726 |
|
729 | |||
| 727 | if fp.tell() < endFp: |
|
730 | if fp.tell() < endFp: | |
| 728 | sys.stderr.write( |
|
731 | sys.stderr.write( | |
| 729 | "Warning: Processing header size is greater than it is considered") |
|
732 | "Warning: Processing header size is greater than it is considered") | |
| 730 |
|
733 | |||
| 731 | return 1 |
|
734 | return 1 | |
| 732 |
|
735 | |||
| 733 | def write(self, fp): |
|
736 | def write(self, fp): | |
| 734 | # Clear DEFINE_PROCESS_CODE |
|
737 | # Clear DEFINE_PROCESS_CODE | |
| 735 | self.processFlags = self.processFlags & (~PROCFLAG.DEFINE_PROCESS_CODE) |
|
738 | self.processFlags = self.processFlags & (~PROCFLAG.DEFINE_PROCESS_CODE) | |
| 736 |
|
739 | |||
| 737 | headerTuple = (self.size, |
|
740 | headerTuple = (self.size, | |
| 738 | self.dtype, |
|
741 | self.dtype, | |
| 739 | self.blockSize, |
|
742 | self.blockSize, | |
| 740 | self.profilesPerBlock, |
|
743 | self.profilesPerBlock, | |
| 741 | self.dataBlocksPerFile, |
|
744 | self.dataBlocksPerFile, | |
| 742 | self.nWindows, |
|
745 | self.nWindows, | |
| 743 | self.processFlags, |
|
746 | self.processFlags, | |
| 744 | self.nCohInt, |
|
747 | self.nCohInt, | |
| 745 | self.nIncohInt, |
|
748 | self.nIncohInt, | |
| 746 | self.totalSpectra) |
|
749 | self.totalSpectra) | |
| 747 |
|
750 | |||
| 748 | header = numpy.array(headerTuple, PROCESSING_STRUCTURE) |
|
751 | header = numpy.array(headerTuple, PROCESSING_STRUCTURE) | |
| 749 | header.tofile(fp) |
|
752 | header.tofile(fp) | |
| 750 |
|
753 | |||
| 751 | if self.nWindows != 0: |
|
754 | if self.nWindows != 0: | |
| 752 | sampleWindowTuple = ( |
|
755 | sampleWindowTuple = ( | |
| 753 | self.firstHeight, self.deltaHeight, self.samplesWin) |
|
756 | self.firstHeight, self.deltaHeight, self.samplesWin) | |
| 754 | samplingWindow = numpy.array(sampleWindowTuple, SAMPLING_STRUCTURE) |
|
757 | samplingWindow = numpy.array(sampleWindowTuple, SAMPLING_STRUCTURE) | |
| 755 | samplingWindow.tofile(fp) |
|
758 | samplingWindow.tofile(fp) | |
| 756 |
|
759 | |||
| 757 | if self.totalSpectra != 0: |
|
760 | if self.totalSpectra != 0: | |
| 758 | # spectraComb = numpy.array([],numpy.dtype('u1')) |
|
761 | # spectraComb = numpy.array([],numpy.dtype('u1')) | |
| 759 | spectraComb = self.spectraComb |
|
762 | spectraComb = self.spectraComb | |
| 760 | spectraComb.tofile(fp) |
|
763 | spectraComb.tofile(fp) | |
| 761 |
|
764 | |||
| 762 | # if self.processFlags & PROCFLAG.DEFINE_PROCESS_CODE == PROCFLAG.DEFINE_PROCESS_CODE: |
|
765 | # if self.processFlags & PROCFLAG.DEFINE_PROCESS_CODE == PROCFLAG.DEFINE_PROCESS_CODE: | |
| 763 | # nCode = numpy.array([self.nCode], numpy.dtype('u4')) #Probar con un dato que almacene codigo, hasta el momento no se hizo la prueba |
|
766 | # nCode = numpy.array([self.nCode], numpy.dtype('u4')) #Probar con un dato que almacene codigo, hasta el momento no se hizo la prueba | |
| 764 | # nCode.tofile(fp) |
|
767 | # nCode.tofile(fp) | |
| 765 | # |
|
768 | # | |
| 766 | # nBaud = numpy.array([self.nBaud], numpy.dtype('u4')) |
|
769 | # nBaud = numpy.array([self.nBaud], numpy.dtype('u4')) | |
| 767 | # nBaud.tofile(fp) |
|
770 | # nBaud.tofile(fp) | |
| 768 | # |
|
771 | # | |
| 769 | # code = self.code.reshape(self.nCode*self.nBaud) |
|
772 | # code = self.code.reshape(self.nCode*self.nBaud) | |
| 770 | # code = code.astype(numpy.dtype('<f4')) |
|
773 | # code = code.astype(numpy.dtype('<f4')) | |
| 771 | # code.tofile(fp) |
|
774 | # code.tofile(fp) | |
| 772 |
|
775 | |||
| 773 | return 1 |
|
776 | return 1 | |
| 774 |
|
777 | |||
| 775 | def get_size(self): |
|
778 | def get_size(self): | |
| 776 |
|
779 | |||
| 777 | self.__size = 40 + 12 * self.nWindows + 2 * self.totalSpectra |
|
780 | self.__size = 40 + 12 * self.nWindows + 2 * self.totalSpectra | |
| 778 |
|
781 | |||
| 779 | # if self.processFlags & PROCFLAG.DEFINE_PROCESS_CODE == PROCFLAG.DEFINE_PROCESS_CODE: |
|
782 | # if self.processFlags & PROCFLAG.DEFINE_PROCESS_CODE == PROCFLAG.DEFINE_PROCESS_CODE: | |
| 780 | # self.__size += 4 + 4 + 4*self.nCode*numpy.ceil(self.nBaud/32.) |
|
783 | # self.__size += 4 + 4 + 4*self.nCode*numpy.ceil(self.nBaud/32.) | |
| 781 | # self.__size += 4 + 4 + 4 * self.nCode * self.nBaud |
|
784 | # self.__size += 4 + 4 + 4 * self.nCode * self.nBaud | |
| 782 |
|
785 | |||
| 783 | return self.__size |
|
786 | return self.__size | |
| 784 |
|
787 | |||
| 785 | def set_size(self, value): |
|
788 | def set_size(self, value): | |
| 786 |
|
789 | |||
| 787 | raise IOError("size is a property and it cannot be set, just read") |
|
790 | raise IOError("size is a property and it cannot be set, just read") | |
| 788 |
|
791 | |||
| 789 | return |
|
792 | return | |
| 790 |
|
793 | |||
| 791 | size = property(get_size, set_size) |
|
794 | size = property(get_size, set_size) | |
| 792 |
|
795 | |||
| 793 |
|
796 | |||
| 794 | class RCfunction: |
|
797 | class RCfunction: | |
| 795 | NONE = 0 |
|
798 | NONE = 0 | |
| 796 | FLIP = 1 |
|
799 | FLIP = 1 | |
| 797 | CODE = 2 |
|
800 | CODE = 2 | |
| 798 | SAMPLING = 3 |
|
801 | SAMPLING = 3 | |
| 799 | LIN6DIV256 = 4 |
|
802 | LIN6DIV256 = 4 | |
| 800 | SYNCHRO = 5 |
|
803 | SYNCHRO = 5 | |
| 801 |
|
804 | |||
| 802 |
|
805 | |||
| 803 | class nCodeType: |
|
806 | class nCodeType: | |
| 804 | NONE = 0 |
|
807 | NONE = 0 | |
| 805 | USERDEFINE = 1 |
|
808 | USERDEFINE = 1 | |
| 806 | BARKER2 = 2 |
|
809 | BARKER2 = 2 | |
| 807 | BARKER3 = 3 |
|
810 | BARKER3 = 3 | |
| 808 | BARKER4 = 4 |
|
811 | BARKER4 = 4 | |
| 809 | BARKER5 = 5 |
|
812 | BARKER5 = 5 | |
| 810 | BARKER7 = 6 |
|
813 | BARKER7 = 6 | |
| 811 | BARKER11 = 7 |
|
814 | BARKER11 = 7 | |
| 812 | BARKER13 = 8 |
|
815 | BARKER13 = 8 | |
| 813 | AC128 = 9 |
|
816 | AC128 = 9 | |
| 814 | COMPLEMENTARYCODE2 = 10 |
|
817 | COMPLEMENTARYCODE2 = 10 | |
| 815 | COMPLEMENTARYCODE4 = 11 |
|
818 | COMPLEMENTARYCODE4 = 11 | |
| 816 | COMPLEMENTARYCODE8 = 12 |
|
819 | COMPLEMENTARYCODE8 = 12 | |
| 817 | COMPLEMENTARYCODE16 = 13 |
|
820 | COMPLEMENTARYCODE16 = 13 | |
| 818 | COMPLEMENTARYCODE32 = 14 |
|
821 | COMPLEMENTARYCODE32 = 14 | |
| 819 | COMPLEMENTARYCODE64 = 15 |
|
822 | COMPLEMENTARYCODE64 = 15 | |
| 820 | COMPLEMENTARYCODE128 = 16 |
|
823 | COMPLEMENTARYCODE128 = 16 | |
| 821 | CODE_BINARY28 = 17 |
|
824 | CODE_BINARY28 = 17 | |
| 822 |
|
825 | |||
| 823 |
|
826 | |||
| 824 | class PROCFLAG: |
|
827 | class PROCFLAG: | |
| 825 |
|
828 | |||
| 826 | COHERENT_INTEGRATION = numpy.uint32(0x00000001) |
|
829 | COHERENT_INTEGRATION = numpy.uint32(0x00000001) | |
| 827 | DECODE_DATA = numpy.uint32(0x00000002) |
|
830 | DECODE_DATA = numpy.uint32(0x00000002) | |
| 828 | SPECTRA_CALC = numpy.uint32(0x00000004) |
|
831 | SPECTRA_CALC = numpy.uint32(0x00000004) | |
| 829 | INCOHERENT_INTEGRATION = numpy.uint32(0x00000008) |
|
832 | INCOHERENT_INTEGRATION = numpy.uint32(0x00000008) | |
| 830 | POST_COHERENT_INTEGRATION = numpy.uint32(0x00000010) |
|
833 | POST_COHERENT_INTEGRATION = numpy.uint32(0x00000010) | |
| 831 | SHIFT_FFT_DATA = numpy.uint32(0x00000020) |
|
834 | SHIFT_FFT_DATA = numpy.uint32(0x00000020) | |
| 832 |
|
835 | |||
| 833 | DATATYPE_CHAR = numpy.uint32(0x00000040) |
|
836 | DATATYPE_CHAR = numpy.uint32(0x00000040) | |
| 834 | DATATYPE_SHORT = numpy.uint32(0x00000080) |
|
837 | DATATYPE_SHORT = numpy.uint32(0x00000080) | |
| 835 | DATATYPE_LONG = numpy.uint32(0x00000100) |
|
838 | DATATYPE_LONG = numpy.uint32(0x00000100) | |
| 836 | DATATYPE_INT64 = numpy.uint32(0x00000200) |
|
839 | DATATYPE_INT64 = numpy.uint32(0x00000200) | |
| 837 | DATATYPE_FLOAT = numpy.uint32(0x00000400) |
|
840 | DATATYPE_FLOAT = numpy.uint32(0x00000400) | |
| 838 | DATATYPE_DOUBLE = numpy.uint32(0x00000800) |
|
841 | DATATYPE_DOUBLE = numpy.uint32(0x00000800) | |
| 839 |
|
842 | |||
| 840 | DATAARRANGE_CONTIGUOUS_CH = numpy.uint32(0x00001000) |
|
843 | DATAARRANGE_CONTIGUOUS_CH = numpy.uint32(0x00001000) | |
| 841 | DATAARRANGE_CONTIGUOUS_H = numpy.uint32(0x00002000) |
|
844 | DATAARRANGE_CONTIGUOUS_H = numpy.uint32(0x00002000) | |
| 842 | DATAARRANGE_CONTIGUOUS_P = numpy.uint32(0x00004000) |
|
845 | DATAARRANGE_CONTIGUOUS_P = numpy.uint32(0x00004000) | |
| 843 |
|
846 | |||
| 844 | SAVE_CHANNELS_DC = numpy.uint32(0x00008000) |
|
847 | SAVE_CHANNELS_DC = numpy.uint32(0x00008000) | |
| 845 | DEFLIP_DATA = numpy.uint32(0x00010000) |
|
848 | DEFLIP_DATA = numpy.uint32(0x00010000) | |
| 846 | DEFINE_PROCESS_CODE = numpy.uint32(0x00020000) |
|
849 | DEFINE_PROCESS_CODE = numpy.uint32(0x00020000) | |
| 847 |
|
850 | |||
| 848 | ACQ_SYS_NATALIA = numpy.uint32(0x00040000) |
|
851 | ACQ_SYS_NATALIA = numpy.uint32(0x00040000) | |
| 849 | ACQ_SYS_ECHOTEK = numpy.uint32(0x00080000) |
|
852 | ACQ_SYS_ECHOTEK = numpy.uint32(0x00080000) | |
| 850 | ACQ_SYS_ADRXD = numpy.uint32(0x000C0000) |
|
853 | ACQ_SYS_ADRXD = numpy.uint32(0x000C0000) | |
| 851 | ACQ_SYS_JULIA = numpy.uint32(0x00100000) |
|
854 | ACQ_SYS_JULIA = numpy.uint32(0x00100000) | |
| 852 | ACQ_SYS_XXXXXX = numpy.uint32(0x00140000) |
|
855 | ACQ_SYS_XXXXXX = numpy.uint32(0x00140000) | |
| 853 |
|
856 | |||
| 854 | EXP_NAME_ESP = numpy.uint32(0x00200000) |
|
857 | EXP_NAME_ESP = numpy.uint32(0x00200000) | |
| 855 | CHANNEL_NAMES_ESP = numpy.uint32(0x00400000) |
|
858 | CHANNEL_NAMES_ESP = numpy.uint32(0x00400000) | |
| 856 |
|
859 | |||
| 857 | OPERATION_MASK = numpy.uint32(0x0000003F) |
|
860 | OPERATION_MASK = numpy.uint32(0x0000003F) | |
| 858 | DATATYPE_MASK = numpy.uint32(0x00000FC0) |
|
861 | DATATYPE_MASK = numpy.uint32(0x00000FC0) | |
| 859 | DATAARRANGE_MASK = numpy.uint32(0x00007000) |
|
862 | DATAARRANGE_MASK = numpy.uint32(0x00007000) | |
| 860 | ACQ_SYS_MASK = numpy.uint32(0x001C0000) |
|
863 | ACQ_SYS_MASK = numpy.uint32(0x001C0000) | |
| 861 |
|
864 | |||
| 862 |
|
865 | |||
| 863 | dtype0 = numpy.dtype([('real', '<i1'), ('imag', '<i1')]) |
|
866 | dtype0 = numpy.dtype([('real', '<i1'), ('imag', '<i1')]) | |
| 864 | dtype1 = numpy.dtype([('real', '<i2'), ('imag', '<i2')]) |
|
867 | dtype1 = numpy.dtype([('real', '<i2'), ('imag', '<i2')]) | |
| 865 | dtype2 = numpy.dtype([('real', '<i4'), ('imag', '<i4')]) |
|
868 | dtype2 = numpy.dtype([('real', '<i4'), ('imag', '<i4')]) | |
| 866 | dtype3 = numpy.dtype([('real', '<i8'), ('imag', '<i8')]) |
|
869 | dtype3 = numpy.dtype([('real', '<i8'), ('imag', '<i8')]) | |
| 867 | dtype4 = numpy.dtype([('real', '<f4'), ('imag', '<f4')]) |
|
870 | dtype4 = numpy.dtype([('real', '<f4'), ('imag', '<f4')]) | |
| 868 | dtype5 = numpy.dtype([('real', '<f8'), ('imag', '<f8')]) |
|
871 | dtype5 = numpy.dtype([('real', '<f8'), ('imag', '<f8')]) | |
| 869 |
|
872 | |||
| 870 | NUMPY_DTYPE_LIST = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5] |
|
873 | NUMPY_DTYPE_LIST = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5] | |
| 871 |
|
874 | |||
| 872 | PROCFLAG_DTYPE_LIST = [PROCFLAG.DATATYPE_CHAR, |
|
875 | PROCFLAG_DTYPE_LIST = [PROCFLAG.DATATYPE_CHAR, | |
| 873 | PROCFLAG.DATATYPE_SHORT, |
|
876 | PROCFLAG.DATATYPE_SHORT, | |
| 874 | PROCFLAG.DATATYPE_LONG, |
|
877 | PROCFLAG.DATATYPE_LONG, | |
| 875 | PROCFLAG.DATATYPE_INT64, |
|
878 | PROCFLAG.DATATYPE_INT64, | |
| 876 | PROCFLAG.DATATYPE_FLOAT, |
|
879 | PROCFLAG.DATATYPE_FLOAT, | |
| 877 | PROCFLAG.DATATYPE_DOUBLE] |
|
880 | PROCFLAG.DATATYPE_DOUBLE] | |
| 878 |
|
881 | |||
| 879 | DTYPE_WIDTH = [1, 2, 4, 8, 4, 8] |
|
882 | DTYPE_WIDTH = [1, 2, 4, 8, 4, 8] | |
| 880 |
|
883 | |||
| 881 |
|
884 | |||
| 882 | def get_dtype_index(numpy_dtype): |
|
885 | def get_dtype_index(numpy_dtype): | |
| 883 |
|
886 | |||
| 884 | index = None |
|
887 | index = None | |
| 885 |
|
888 | |||
| 886 | for i in range(len(NUMPY_DTYPE_LIST)): |
|
889 | for i in range(len(NUMPY_DTYPE_LIST)): | |
| 887 | if numpy_dtype == NUMPY_DTYPE_LIST[i]: |
|
890 | if numpy_dtype == NUMPY_DTYPE_LIST[i]: | |
| 888 | index = i |
|
891 | index = i | |
| 889 | break |
|
892 | break | |
| 890 |
|
893 | |||
| 891 | return index |
|
894 | return index | |
| 892 |
|
895 | |||
| 893 |
|
896 | |||
| 894 | def get_numpy_dtype(index): |
|
897 | def get_numpy_dtype(index): | |
| 895 |
|
898 | |||
| 896 | return NUMPY_DTYPE_LIST[index] |
|
899 | return NUMPY_DTYPE_LIST[index] | |
| 897 |
|
900 | |||
| 898 |
|
901 | |||
| 899 | def get_procflag_dtype(index): |
|
902 | def get_procflag_dtype(index): | |
| 900 |
|
903 | |||
| 901 | return PROCFLAG_DTYPE_LIST[index] |
|
904 | return PROCFLAG_DTYPE_LIST[index] | |
| 902 |
|
905 | |||
| 903 |
|
906 | |||
| 904 | def get_dtype_width(index): |
|
907 | def get_dtype_width(index): | |
| 905 |
|
908 | |||
| 906 | return DTYPE_WIDTH[index] No newline at end of file |
|
909 | return DTYPE_WIDTH[index] | |
| @@ -1,5 +1,6 | |||||
| 1 | from .jroplot_voltage import * |
|
1 | from .jroplot_voltage import * | |
| 2 | from .jroplot_spectra import * |
|
2 | from .jroplot_spectra import * | |
| 3 | from .jroplot_heispectra import * |
|
3 | from .jroplot_heispectra import * | |
| 4 | from .jroplot_correlation import * |
|
4 | from .jroplot_correlation import * | |
| 5 | from .jroplot_parameters import * |
|
5 | from .jroplot_parameters import * | |
|
|
6 | from .jroplot_voltage_lags import * | |||
| @@ -1,693 +1,697 | |||||
| 1 | # Copyright (c) 2012-2020 Jicamarca Radio Observatory |
|
1 | # Copyright (c) 2012-2020 Jicamarca Radio Observatory | |
| 2 | # All rights reserved. |
|
2 | # All rights reserved. | |
| 3 | # |
|
3 | # | |
| 4 | # Distributed under the terms of the BSD 3-clause license. |
|
4 | # Distributed under the terms of the BSD 3-clause license. | |
| 5 | """Base class to create plot operations |
|
5 | """Base class to create plot operations | |
| 6 |
|
6 | |||
| 7 | """ |
|
7 | """ | |
| 8 |
|
8 | |||
| 9 | import os |
|
9 | import os | |
| 10 | import sys |
|
10 | import sys | |
| 11 | import zmq |
|
11 | import zmq | |
| 12 | import time |
|
12 | import time | |
| 13 | import numpy |
|
13 | import numpy | |
| 14 | import datetime |
|
14 | import datetime | |
| 15 | from collections import deque |
|
15 | from collections import deque | |
| 16 | from functools import wraps |
|
16 | from functools import wraps | |
| 17 | from threading import Thread |
|
17 | from threading import Thread | |
| 18 | import matplotlib |
|
18 | import matplotlib | |
| 19 |
|
19 | |||
| 20 | if 'BACKEND' in os.environ: |
|
20 | if 'BACKEND' in os.environ: | |
| 21 | matplotlib.use(os.environ['BACKEND']) |
|
21 | matplotlib.use(os.environ['BACKEND']) | |
| 22 | elif 'linux' in sys.platform: |
|
22 | elif 'linux' in sys.platform: | |
| 23 | matplotlib.use("TkAgg") |
|
23 | matplotlib.use("TkAgg") | |
| 24 | elif 'darwin' in sys.platform: |
|
24 | elif 'darwin' in sys.platform: | |
| 25 | matplotlib.use('MacOSX') |
|
25 | matplotlib.use('MacOSX') | |
| 26 | else: |
|
26 | else: | |
| 27 | from schainpy.utils import log |
|
27 | from schainpy.utils import log | |
| 28 | log.warning('Using default Backend="Agg"', 'INFO') |
|
28 | log.warning('Using default Backend="Agg"', 'INFO') | |
| 29 | matplotlib.use('Agg') |
|
29 | matplotlib.use('Agg') | |
| 30 |
|
30 | |||
| 31 | import matplotlib.pyplot as plt |
|
31 | import matplotlib.pyplot as plt | |
| 32 | from matplotlib.patches import Polygon |
|
32 | from matplotlib.patches import Polygon | |
| 33 | from mpl_toolkits.axes_grid1 import make_axes_locatable |
|
33 | from mpl_toolkits.axes_grid1 import make_axes_locatable | |
| 34 | from matplotlib.ticker import FuncFormatter, LinearLocator, MultipleLocator |
|
34 | from matplotlib.ticker import FuncFormatter, LinearLocator, MultipleLocator | |
| 35 |
|
35 | |||
| 36 | from schainpy.model.data.jrodata import PlotterData |
|
36 | from schainpy.model.data.jrodata import PlotterData | |
| 37 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator |
|
37 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator | |
| 38 | from schainpy.utils import log |
|
38 | from schainpy.utils import log | |
| 39 |
|
39 | |||
| 40 | jet_values = matplotlib.pyplot.get_cmap('jet', 100)(numpy.arange(100))[10:90] |
|
40 | jet_values = matplotlib.pyplot.get_cmap('jet', 100)(numpy.arange(100))[10:90] | |
| 41 | blu_values = matplotlib.pyplot.get_cmap( |
|
41 | blu_values = matplotlib.pyplot.get_cmap( | |
| 42 | 'seismic_r', 20)(numpy.arange(20))[10:15] |
|
42 | 'seismic_r', 20)(numpy.arange(20))[10:15] | |
| 43 | ncmap = matplotlib.colors.LinearSegmentedColormap.from_list( |
|
43 | ncmap = matplotlib.colors.LinearSegmentedColormap.from_list( | |
| 44 | 'jro', numpy.vstack((blu_values, jet_values))) |
|
44 | 'jro', numpy.vstack((blu_values, jet_values))) | |
| 45 | matplotlib.pyplot.register_cmap(cmap=ncmap) |
|
45 | matplotlib.pyplot.register_cmap(cmap=ncmap) | |
| 46 |
|
46 | |||
| 47 | CMAPS = [plt.get_cmap(s) for s in ('jro', 'jet', 'viridis', |
|
47 | CMAPS = [plt.get_cmap(s) for s in ('jro', 'jet', 'viridis', | |
| 48 | 'plasma', 'inferno', 'Greys', 'seismic', 'bwr', 'coolwarm')] |
|
48 | 'plasma', 'inferno', 'Greys', 'seismic', 'bwr', 'coolwarm')] | |
| 49 |
|
49 | |||
| 50 | EARTH_RADIUS = 6.3710e3 |
|
50 | EARTH_RADIUS = 6.3710e3 | |
| 51 |
|
51 | |||
| 52 | def ll2xy(lat1, lon1, lat2, lon2): |
|
52 | def ll2xy(lat1, lon1, lat2, lon2): | |
| 53 |
|
53 | |||
| 54 | p = 0.017453292519943295 |
|
54 | p = 0.017453292519943295 | |
| 55 | a = 0.5 - numpy.cos((lat2 - lat1) * p)/2 + numpy.cos(lat1 * p) * \ |
|
55 | a = 0.5 - numpy.cos((lat2 - lat1) * p)/2 + numpy.cos(lat1 * p) * \ | |
| 56 | numpy.cos(lat2 * p) * (1 - numpy.cos((lon2 - lon1) * p)) / 2 |
|
56 | numpy.cos(lat2 * p) * (1 - numpy.cos((lon2 - lon1) * p)) / 2 | |
| 57 | r = 12742 * numpy.arcsin(numpy.sqrt(a)) |
|
57 | r = 12742 * numpy.arcsin(numpy.sqrt(a)) | |
| 58 | theta = numpy.arctan2(numpy.sin((lon2-lon1)*p)*numpy.cos(lat2*p), numpy.cos(lat1*p) |
|
58 | theta = numpy.arctan2(numpy.sin((lon2-lon1)*p)*numpy.cos(lat2*p), numpy.cos(lat1*p) | |
| 59 | * numpy.sin(lat2*p)-numpy.sin(lat1*p)*numpy.cos(lat2*p)*numpy.cos((lon2-lon1)*p)) |
|
59 | * numpy.sin(lat2*p)-numpy.sin(lat1*p)*numpy.cos(lat2*p)*numpy.cos((lon2-lon1)*p)) | |
| 60 | theta = -theta + numpy.pi/2 |
|
60 | theta = -theta + numpy.pi/2 | |
| 61 | return r*numpy.cos(theta), r*numpy.sin(theta) |
|
61 | return r*numpy.cos(theta), r*numpy.sin(theta) | |
| 62 |
|
62 | |||
| 63 |
|
63 | |||
| 64 | def km2deg(km): |
|
64 | def km2deg(km): | |
| 65 | ''' |
|
65 | ''' | |
| 66 | Convert distance in km to degrees |
|
66 | Convert distance in km to degrees | |
| 67 | ''' |
|
67 | ''' | |
| 68 |
|
68 | |||
| 69 | return numpy.rad2deg(km/EARTH_RADIUS) |
|
69 | return numpy.rad2deg(km/EARTH_RADIUS) | |
| 70 |
|
70 | |||
| 71 |
|
71 | |||
| 72 | def figpause(interval): |
|
72 | def figpause(interval): | |
| 73 | backend = plt.rcParams['backend'] |
|
73 | backend = plt.rcParams['backend'] | |
| 74 | if backend in matplotlib.rcsetup.interactive_bk: |
|
74 | if backend in matplotlib.rcsetup.interactive_bk: | |
| 75 | figManager = matplotlib._pylab_helpers.Gcf.get_active() |
|
75 | figManager = matplotlib._pylab_helpers.Gcf.get_active() | |
| 76 | if figManager is not None: |
|
76 | if figManager is not None: | |
| 77 | canvas = figManager.canvas |
|
77 | canvas = figManager.canvas | |
| 78 | if canvas.figure.stale: |
|
78 | if canvas.figure.stale: | |
| 79 | canvas.draw() |
|
79 | canvas.draw() | |
| 80 | try: |
|
80 | try: | |
| 81 | canvas.start_event_loop(interval) |
|
81 | canvas.start_event_loop(interval) | |
| 82 | except: |
|
82 | except: | |
| 83 | pass |
|
83 | pass | |
| 84 | return |
|
84 | return | |
| 85 |
|
85 | |||
| 86 | def popup(message): |
|
86 | def popup(message): | |
| 87 | ''' |
|
87 | ''' | |
| 88 | ''' |
|
88 | ''' | |
| 89 |
|
89 | |||
| 90 | fig = plt.figure(figsize=(12, 8), facecolor='r') |
|
90 | fig = plt.figure(figsize=(12, 8), facecolor='r') | |
| 91 | text = '\n'.join([s.strip() for s in message.split(':')]) |
|
91 | text = '\n'.join([s.strip() for s in message.split(':')]) | |
| 92 | fig.text(0.01, 0.5, text, ha='left', va='center', |
|
92 | fig.text(0.01, 0.5, text, ha='left', va='center', | |
| 93 | size='20', weight='heavy', color='w') |
|
93 | size='20', weight='heavy', color='w') | |
| 94 | fig.show() |
|
94 | fig.show() | |
| 95 | figpause(1000) |
|
95 | figpause(1000) | |
| 96 |
|
96 | |||
| 97 |
|
97 | |||
| 98 | class Throttle(object): |
|
98 | class Throttle(object): | |
| 99 | ''' |
|
99 | ''' | |
| 100 | Decorator that prevents a function from being called more than once every |
|
100 | Decorator that prevents a function from being called more than once every | |
| 101 | time period. |
|
101 | time period. | |
| 102 | To create a function that cannot be called more than once a minute, but |
|
102 | To create a function that cannot be called more than once a minute, but | |
| 103 | will sleep until it can be called: |
|
103 | will sleep until it can be called: | |
| 104 | @Throttle(minutes=1) |
|
104 | @Throttle(minutes=1) | |
| 105 | def foo(): |
|
105 | def foo(): | |
| 106 | pass |
|
106 | pass | |
| 107 |
|
107 | |||
| 108 | for i in range(10): |
|
108 | for i in range(10): | |
| 109 | foo() |
|
109 | foo() | |
| 110 | print "This function has run %s times." % i |
|
110 | print "This function has run %s times." % i | |
| 111 | ''' |
|
111 | ''' | |
| 112 |
|
112 | |||
| 113 | def __init__(self, seconds=0, minutes=0, hours=0): |
|
113 | def __init__(self, seconds=0, minutes=0, hours=0): | |
| 114 | self.throttle_period = datetime.timedelta( |
|
114 | self.throttle_period = datetime.timedelta( | |
| 115 | seconds=seconds, minutes=minutes, hours=hours |
|
115 | seconds=seconds, minutes=minutes, hours=hours | |
| 116 | ) |
|
116 | ) | |
| 117 |
|
117 | |||
| 118 | self.time_of_last_call = datetime.datetime.min |
|
118 | self.time_of_last_call = datetime.datetime.min | |
| 119 |
|
119 | |||
| 120 | def __call__(self, fn): |
|
120 | def __call__(self, fn): | |
| 121 | @wraps(fn) |
|
121 | @wraps(fn) | |
| 122 | def wrapper(*args, **kwargs): |
|
122 | def wrapper(*args, **kwargs): | |
| 123 | coerce = kwargs.pop('coerce', None) |
|
123 | coerce = kwargs.pop('coerce', None) | |
| 124 | if coerce: |
|
124 | if coerce: | |
| 125 | self.time_of_last_call = datetime.datetime.now() |
|
125 | self.time_of_last_call = datetime.datetime.now() | |
| 126 | return fn(*args, **kwargs) |
|
126 | return fn(*args, **kwargs) | |
| 127 | else: |
|
127 | else: | |
| 128 | now = datetime.datetime.now() |
|
128 | now = datetime.datetime.now() | |
| 129 | time_since_last_call = now - self.time_of_last_call |
|
129 | time_since_last_call = now - self.time_of_last_call | |
| 130 | time_left = self.throttle_period - time_since_last_call |
|
130 | time_left = self.throttle_period - time_since_last_call | |
| 131 |
|
131 | |||
| 132 | if time_left > datetime.timedelta(seconds=0): |
|
132 | if time_left > datetime.timedelta(seconds=0): | |
| 133 | return |
|
133 | return | |
| 134 |
|
134 | |||
| 135 | self.time_of_last_call = datetime.datetime.now() |
|
135 | self.time_of_last_call = datetime.datetime.now() | |
| 136 | return fn(*args, **kwargs) |
|
136 | return fn(*args, **kwargs) | |
| 137 |
|
137 | |||
| 138 | return wrapper |
|
138 | return wrapper | |
| 139 |
|
139 | |||
| 140 | def apply_throttle(value): |
|
140 | def apply_throttle(value): | |
| 141 |
|
141 | |||
| 142 | @Throttle(seconds=value) |
|
142 | @Throttle(seconds=value) | |
| 143 | def fnThrottled(fn): |
|
143 | def fnThrottled(fn): | |
| 144 | fn() |
|
144 | fn() | |
| 145 |
|
145 | |||
| 146 | return fnThrottled |
|
146 | return fnThrottled | |
| 147 |
|
147 | |||
| 148 |
|
148 | |||
| 149 | @MPDecorator |
|
149 | @MPDecorator | |
| 150 | class Plot(Operation): |
|
150 | class Plot(Operation): | |
| 151 | """Base class for Schain plotting operations |
|
151 | """Base class for Schain plotting operations | |
| 152 |
|
152 | |||
| 153 | This class should never be use directtly you must subclass a new operation, |
|
153 | This class should never be use directtly you must subclass a new operation, | |
| 154 | children classes must be defined as follow: |
|
154 | children classes must be defined as follow: | |
| 155 |
|
155 | |||
| 156 | ExamplePlot(Plot): |
|
156 | ExamplePlot(Plot): | |
| 157 |
|
157 | |||
| 158 | CODE = 'code' |
|
158 | CODE = 'code' | |
| 159 | colormap = 'jet' |
|
159 | colormap = 'jet' | |
| 160 | plot_type = 'pcolor' # options are ('pcolor', 'pcolorbuffer', 'scatter', 'scatterbuffer') |
|
160 | plot_type = 'pcolor' # options are ('pcolor', 'pcolorbuffer', 'scatter', 'scatterbuffer') | |
| 161 |
|
161 | |||
| 162 | def setup(self): |
|
162 | def setup(self): | |
| 163 | pass |
|
163 | pass | |
| 164 |
|
164 | |||
| 165 | def plot(self): |
|
165 | def plot(self): | |
| 166 | pass |
|
166 | pass | |
| 167 |
|
167 | |||
| 168 | """ |
|
168 | """ | |
| 169 |
|
169 | |||
| 170 | CODE = 'Figure' |
|
170 | CODE = 'Figure' | |
| 171 | colormap = 'jet' |
|
171 | colormap = 'jet' | |
| 172 | bgcolor = 'white' |
|
172 | bgcolor = 'white' | |
| 173 | buffering = True |
|
173 | buffering = True | |
| 174 | __missing = 1E30 |
|
174 | __missing = 1E30 | |
| 175 |
|
175 | |||
| 176 | __attrs__ = ['show', 'save', 'ymin', 'ymax', 'zmin', 'zmax', 'title', |
|
176 | __attrs__ = ['show', 'save', 'ymin', 'ymax', 'zmin', 'zmax', 'title', | |
| 177 | 'showprofile'] |
|
177 | 'showprofile'] | |
| 178 |
|
178 | |||
| 179 | def __init__(self): |
|
179 | def __init__(self): | |
| 180 |
|
180 | |||
| 181 | Operation.__init__(self) |
|
181 | Operation.__init__(self) | |
| 182 | self.isConfig = False |
|
182 | self.isConfig = False | |
| 183 | self.isPlotConfig = False |
|
183 | self.isPlotConfig = False | |
| 184 | self.save_time = 0 |
|
184 | self.save_time = 0 | |
| 185 | self.sender_time = 0 |
|
185 | self.sender_time = 0 | |
| 186 | self.data = None |
|
186 | self.data = None | |
| 187 | self.firsttime = True |
|
187 | self.firsttime = True | |
| 188 | self.sender_queue = deque(maxlen=10) |
|
188 | self.sender_queue = deque(maxlen=10) | |
| 189 | self.plots_adjust = {'left': 0.125, 'right': 0.9, 'bottom': 0.15, 'top': 0.9, 'wspace': 0.2, 'hspace': 0.2} |
|
189 | self.plots_adjust = {'left': 0.125, 'right': 0.9, 'bottom': 0.15, 'top': 0.9, 'wspace': 0.2, 'hspace': 0.2} | |
| 190 |
|
190 | |||
| 191 | def __fmtTime(self, x, pos): |
|
191 | def __fmtTime(self, x, pos): | |
| 192 | ''' |
|
192 | ''' | |
| 193 | ''' |
|
193 | ''' | |
| 194 |
|
194 | |||
| 195 | return '{}'.format(self.getDateTime(x).strftime('%H:%M')) |
|
195 | return '{}'.format(self.getDateTime(x).strftime('%H:%M')) | |
| 196 |
|
196 | |||
| 197 | def __setup(self, **kwargs): |
|
197 | def __setup(self, **kwargs): | |
| 198 | ''' |
|
198 | ''' | |
| 199 | Initialize variables |
|
199 | Initialize variables | |
| 200 | ''' |
|
200 | ''' | |
| 201 |
|
201 | |||
| 202 | self.figures = [] |
|
202 | self.figures = [] | |
| 203 | self.axes = [] |
|
203 | self.axes = [] | |
| 204 | self.cb_axes = [] |
|
204 | self.cb_axes = [] | |
| 205 | self.localtime = kwargs.pop('localtime', True) |
|
205 | self.localtime = kwargs.pop('localtime', True) | |
| 206 | self.show = kwargs.get('show', True) |
|
206 | self.show = kwargs.get('show', True) | |
| 207 | self.save = kwargs.get('save', False) |
|
207 | self.save = kwargs.get('save', False) | |
| 208 | self.save_period = kwargs.get('save_period', 0) |
|
208 | self.save_period = kwargs.get('save_period', 0) | |
| 209 | self.colormap = kwargs.get('colormap', self.colormap) |
|
209 | self.colormap = kwargs.get('colormap', self.colormap) | |
| 210 | self.colormap_coh = kwargs.get('colormap_coh', 'jet') |
|
210 | self.colormap_coh = kwargs.get('colormap_coh', 'jet') | |
| 211 | self.colormap_phase = kwargs.get('colormap_phase', 'RdBu_r') |
|
211 | self.colormap_phase = kwargs.get('colormap_phase', 'RdBu_r') | |
| 212 | self.colormaps = kwargs.get('colormaps', None) |
|
212 | self.colormaps = kwargs.get('colormaps', None) | |
| 213 | self.bgcolor = kwargs.get('bgcolor', self.bgcolor) |
|
213 | self.bgcolor = kwargs.get('bgcolor', self.bgcolor) | |
| 214 | self.showprofile = kwargs.get('showprofile', False) |
|
214 | self.showprofile = kwargs.get('showprofile', False) | |
| 215 | self.title = kwargs.get('wintitle', self.CODE.upper()) |
|
215 | self.title = kwargs.get('wintitle', self.CODE.upper()) | |
| 216 | self.cb_label = kwargs.get('cb_label', None) |
|
216 | self.cb_label = kwargs.get('cb_label', None) | |
| 217 | self.cb_labels = kwargs.get('cb_labels', None) |
|
217 | self.cb_labels = kwargs.get('cb_labels', None) | |
| 218 | self.labels = kwargs.get('labels', None) |
|
218 | self.labels = kwargs.get('labels', None) | |
| 219 | self.xaxis = kwargs.get('xaxis', 'frequency') |
|
219 | self.xaxis = kwargs.get('xaxis', 'frequency') | |
| 220 | self.zmin = kwargs.get('zmin', None) |
|
220 | self.zmin = kwargs.get('zmin', None) | |
| 221 | self.zmax = kwargs.get('zmax', None) |
|
221 | self.zmax = kwargs.get('zmax', None) | |
| 222 | self.zlimits = kwargs.get('zlimits', None) |
|
222 | self.zlimits = kwargs.get('zlimits', None) | |
|
|
223 | self.xlimits = kwargs.get('xlimits', None) | |||
|
|
224 | self.xstep_given = kwargs.get('xstep_given', None) | |||
|
|
225 | self.ystep_given = kwargs.get('ystep_given', None) | |||
|
|
226 | self.autoxticks = kwargs.get('autoxticks', True) | |||
| 223 | self.xmin = kwargs.get('xmin', None) |
|
227 | self.xmin = kwargs.get('xmin', None) | |
| 224 | self.xmax = kwargs.get('xmax', None) |
|
228 | self.xmax = kwargs.get('xmax', None) | |
| 225 | self.xrange = kwargs.get('xrange', 12) |
|
229 | self.xrange = kwargs.get('xrange', 12) | |
| 226 | self.xscale = kwargs.get('xscale', None) |
|
230 | self.xscale = kwargs.get('xscale', None) | |
| 227 | self.ymin = kwargs.get('ymin', None) |
|
231 | self.ymin = kwargs.get('ymin', None) | |
| 228 | self.ymax = kwargs.get('ymax', None) |
|
232 | self.ymax = kwargs.get('ymax', None) | |
| 229 | self.yscale = kwargs.get('yscale', None) |
|
233 | self.yscale = kwargs.get('yscale', None) | |
| 230 | self.xlabel = kwargs.get('xlabel', None) |
|
234 | self.xlabel = kwargs.get('xlabel', None) | |
| 231 | self.attr_time = kwargs.get('attr_time', 'utctime') |
|
235 | self.attr_time = kwargs.get('attr_time', 'utctime') | |
| 232 | self.attr_data = kwargs.get('attr_data', 'data_param') |
|
236 | self.attr_data = kwargs.get('attr_data', 'data_param') | |
| 233 | self.decimation = kwargs.get('decimation', None) |
|
237 | self.decimation = kwargs.get('decimation', None) | |
| 234 | self.oneFigure = kwargs.get('oneFigure', True) |
|
238 | self.oneFigure = kwargs.get('oneFigure', True) | |
| 235 | self.width = kwargs.get('width', None) |
|
239 | self.width = kwargs.get('width', None) | |
| 236 | self.height = kwargs.get('height', None) |
|
240 | self.height = kwargs.get('height', None) | |
| 237 | self.colorbar = kwargs.get('colorbar', True) |
|
241 | self.colorbar = kwargs.get('colorbar', True) | |
| 238 | self.factors = kwargs.get('factors', [1, 1, 1, 1, 1, 1, 1, 1]) |
|
242 | self.factors = kwargs.get('factors', [1, 1, 1, 1, 1, 1, 1, 1]) | |
| 239 | self.channels = kwargs.get('channels', None) |
|
243 | self.channels = kwargs.get('channels', None) | |
| 240 | self.titles = kwargs.get('titles', []) |
|
244 | self.titles = kwargs.get('titles', []) | |
| 241 | self.polar = False |
|
245 | self.polar = False | |
| 242 | self.type = kwargs.get('type', 'iq') |
|
246 | self.type = kwargs.get('type', 'iq') | |
| 243 | self.grid = kwargs.get('grid', False) |
|
247 | self.grid = kwargs.get('grid', False) | |
| 244 | self.pause = kwargs.get('pause', False) |
|
248 | self.pause = kwargs.get('pause', False) | |
| 245 | self.save_code = kwargs.get('save_code', self.CODE) |
|
249 | self.save_code = kwargs.get('save_code', self.CODE) | |
| 246 | self.throttle = kwargs.get('throttle', 0) |
|
250 | self.throttle = kwargs.get('throttle', 0) | |
| 247 | self.exp_code = kwargs.get('exp_code', None) |
|
251 | self.exp_code = kwargs.get('exp_code', None) | |
| 248 | self.server = kwargs.get('server', False) |
|
252 | self.server = kwargs.get('server', False) | |
| 249 | self.sender_period = kwargs.get('sender_period', 60) |
|
253 | self.sender_period = kwargs.get('sender_period', 60) | |
| 250 | self.tag = kwargs.get('tag', '') |
|
254 | self.tag = kwargs.get('tag', '') | |
| 251 | self.height_index = kwargs.get('height_index', None) |
|
255 | self.height_index = kwargs.get('height_index', None) | |
| 252 | self.__throttle_plot = apply_throttle(self.throttle) |
|
256 | self.__throttle_plot = apply_throttle(self.throttle) | |
| 253 | code = self.attr_data if self.attr_data else self.CODE |
|
257 | code = self.attr_data if self.attr_data else self.CODE | |
| 254 | self.data = PlotterData(self.CODE, self.exp_code, self.localtime) |
|
258 | self.data = PlotterData(self.CODE, self.exp_code, self.localtime) | |
| 255 |
|
259 | |||
| 256 | if self.server: |
|
260 | if self.server: | |
| 257 | if not self.server.startswith('tcp://'): |
|
261 | if not self.server.startswith('tcp://'): | |
| 258 | self.server = 'tcp://{}'.format(self.server) |
|
262 | self.server = 'tcp://{}'.format(self.server) | |
| 259 | log.success( |
|
263 | log.success( | |
| 260 | 'Sending to server: {}'.format(self.server), |
|
264 | 'Sending to server: {}'.format(self.server), | |
| 261 | self.name |
|
265 | self.name | |
| 262 | ) |
|
266 | ) | |
| 263 |
|
267 | |||
| 264 | if isinstance(self.attr_data, str): |
|
268 | if isinstance(self.attr_data, str): | |
| 265 | self.attr_data = [self.attr_data] |
|
269 | self.attr_data = [self.attr_data] | |
| 266 |
|
270 | |||
| 267 | def __setup_plot(self): |
|
271 | def __setup_plot(self): | |
| 268 | ''' |
|
272 | ''' | |
| 269 | Common setup for all figures, here figures and axes are created |
|
273 | Common setup for all figures, here figures and axes are created | |
| 270 | ''' |
|
274 | ''' | |
| 271 |
|
275 | |||
| 272 | self.setup() |
|
276 | self.setup() | |
| 273 |
|
277 | |||
| 274 |
self.time_label = 'LT' if self.localtime else 'UTC' |
|
278 | self.time_label = 'LT' if self.localtime else 'UTC' | |
| 275 |
|
279 | |||
| 276 | if self.width is None: |
|
280 | if self.width is None: | |
| 277 | self.width = 8 |
|
281 | self.width = 8 | |
| 278 |
|
282 | |||
| 279 | self.figures = [] |
|
283 | self.figures = [] | |
| 280 | self.axes = [] |
|
284 | self.axes = [] | |
| 281 | self.cb_axes = [] |
|
285 | self.cb_axes = [] | |
| 282 | self.pf_axes = [] |
|
286 | self.pf_axes = [] | |
| 283 | self.cmaps = [] |
|
287 | self.cmaps = [] | |
| 284 |
|
288 | |||
| 285 | size = '15%' if self.ncols == 1 else '30%' |
|
289 | size = '15%' if self.ncols == 1 else '30%' | |
| 286 | pad = '4%' if self.ncols == 1 else '8%' |
|
290 | pad = '4%' if self.ncols == 1 else '8%' | |
| 287 |
|
291 | |||
| 288 | if self.oneFigure: |
|
292 | if self.oneFigure: | |
| 289 | if self.height is None: |
|
293 | if self.height is None: | |
| 290 | self.height = 1.4 * self.nrows + 1 |
|
294 | self.height = 1.4 * self.nrows + 1 | |
| 291 | fig = plt.figure(figsize=(self.width, self.height), |
|
295 | fig = plt.figure(figsize=(self.width, self.height), | |
| 292 | edgecolor='k', |
|
296 | edgecolor='k', | |
| 293 | facecolor='w') |
|
297 | facecolor='w') | |
| 294 | self.figures.append(fig) |
|
298 | self.figures.append(fig) | |
| 295 | for n in range(self.nplots): |
|
299 | for n in range(self.nplots): | |
| 296 | ax = fig.add_subplot(self.nrows, self.ncols, |
|
300 | ax = fig.add_subplot(self.nrows, self.ncols, | |
| 297 | n + 1, polar=self.polar) |
|
301 | n + 1, polar=self.polar) | |
| 298 | ax.tick_params(labelsize=8) |
|
302 | ax.tick_params(labelsize=8) | |
| 299 | ax.firsttime = True |
|
303 | ax.firsttime = True | |
| 300 | ax.index = 0 |
|
304 | ax.index = 0 | |
| 301 | ax.press = None |
|
305 | ax.press = None | |
| 302 | self.axes.append(ax) |
|
306 | self.axes.append(ax) | |
| 303 | if self.showprofile: |
|
307 | if self.showprofile: | |
| 304 | cax = self.__add_axes(ax, size=size, pad=pad) |
|
308 | cax = self.__add_axes(ax, size=size, pad=pad) | |
| 305 | cax.tick_params(labelsize=8) |
|
309 | cax.tick_params(labelsize=8) | |
| 306 | self.pf_axes.append(cax) |
|
310 | self.pf_axes.append(cax) | |
| 307 | else: |
|
311 | else: | |
| 308 | if self.height is None: |
|
312 | if self.height is None: | |
| 309 | self.height = 3 |
|
313 | self.height = 3 | |
| 310 | for n in range(self.nplots): |
|
314 | for n in range(self.nplots): | |
| 311 | fig = plt.figure(figsize=(self.width, self.height), |
|
315 | fig = plt.figure(figsize=(self.width, self.height), | |
| 312 | edgecolor='k', |
|
316 | edgecolor='k', | |
| 313 | facecolor='w') |
|
317 | facecolor='w') | |
| 314 | ax = fig.add_subplot(1, 1, 1, polar=self.polar) |
|
318 | ax = fig.add_subplot(1, 1, 1, polar=self.polar) | |
| 315 | ax.tick_params(labelsize=8) |
|
319 | ax.tick_params(labelsize=8) | |
| 316 | ax.firsttime = True |
|
320 | ax.firsttime = True | |
| 317 | ax.index = 0 |
|
321 | ax.index = 0 | |
| 318 | ax.press = None |
|
322 | ax.press = None | |
| 319 | self.figures.append(fig) |
|
323 | self.figures.append(fig) | |
| 320 | self.axes.append(ax) |
|
324 | self.axes.append(ax) | |
| 321 | if self.showprofile: |
|
325 | if self.showprofile: | |
| 322 | cax = self.__add_axes(ax, size=size, pad=pad) |
|
326 | cax = self.__add_axes(ax, size=size, pad=pad) | |
| 323 | cax.tick_params(labelsize=8) |
|
327 | cax.tick_params(labelsize=8) | |
| 324 | self.pf_axes.append(cax) |
|
328 | self.pf_axes.append(cax) | |
| 325 |
|
329 | |||
| 326 | for n in range(self.nrows): |
|
330 | for n in range(self.nrows): | |
| 327 | if self.colormaps is not None: |
|
331 | if self.colormaps is not None: | |
| 328 | cmap = plt.get_cmap(self.colormaps[n]) |
|
332 | cmap = plt.get_cmap(self.colormaps[n]) | |
| 329 | else: |
|
333 | else: | |
| 330 | cmap = plt.get_cmap(self.colormap) |
|
334 | cmap = plt.get_cmap(self.colormap) | |
| 331 | cmap.set_bad(self.bgcolor, 1.) |
|
335 | cmap.set_bad(self.bgcolor, 1.) | |
| 332 | self.cmaps.append(cmap) |
|
336 | self.cmaps.append(cmap) | |
| 333 |
|
337 | |||
| 334 | def __add_axes(self, ax, size='30%', pad='8%'): |
|
338 | def __add_axes(self, ax, size='30%', pad='8%'): | |
| 335 | ''' |
|
339 | ''' | |
| 336 | Add new axes to the given figure |
|
340 | Add new axes to the given figure | |
| 337 | ''' |
|
341 | ''' | |
| 338 | divider = make_axes_locatable(ax) |
|
342 | divider = make_axes_locatable(ax) | |
| 339 | nax = divider.new_horizontal(size=size, pad=pad) |
|
343 | nax = divider.new_horizontal(size=size, pad=pad) | |
| 340 | ax.figure.add_axes(nax) |
|
344 | ax.figure.add_axes(nax) | |
| 341 | return nax |
|
345 | return nax | |
| 342 |
|
346 | |||
| 343 | def fill_gaps(self, x_buffer, y_buffer, z_buffer): |
|
347 | def fill_gaps(self, x_buffer, y_buffer, z_buffer): | |
| 344 | ''' |
|
348 | ''' | |
| 345 | Create a masked array for missing data |
|
349 | Create a masked array for missing data | |
| 346 | ''' |
|
350 | ''' | |
| 347 | if x_buffer.shape[0] < 2: |
|
351 | if x_buffer.shape[0] < 2: | |
| 348 | return x_buffer, y_buffer, z_buffer |
|
352 | return x_buffer, y_buffer, z_buffer | |
| 349 |
|
353 | |||
| 350 | deltas = x_buffer[1:] - x_buffer[0:-1] |
|
354 | deltas = x_buffer[1:] - x_buffer[0:-1] | |
| 351 | x_median = numpy.median(deltas) |
|
355 | x_median = numpy.median(deltas) | |
| 352 |
|
356 | |||
| 353 | index = numpy.where(deltas > 5 * x_median) |
|
357 | index = numpy.where(deltas > 5 * x_median) | |
| 354 |
|
358 | |||
| 355 | if len(index[0]) != 0: |
|
359 | if len(index[0]) != 0: | |
| 356 | z_buffer[::, index[0], ::] = self.__missing |
|
360 | z_buffer[::, index[0], ::] = self.__missing | |
| 357 | z_buffer = numpy.ma.masked_inside(z_buffer, |
|
361 | z_buffer = numpy.ma.masked_inside(z_buffer, | |
| 358 | 0.99 * self.__missing, |
|
362 | 0.99 * self.__missing, | |
| 359 | 1.01 * self.__missing) |
|
363 | 1.01 * self.__missing) | |
| 360 |
|
364 | |||
| 361 | return x_buffer, y_buffer, z_buffer |
|
365 | return x_buffer, y_buffer, z_buffer | |
| 362 |
|
366 | |||
| 363 | def decimate(self): |
|
367 | def decimate(self): | |
| 364 |
|
368 | |||
| 365 | # dx = int(len(self.x)/self.__MAXNUMX) + 1 |
|
369 | # dx = int(len(self.x)/self.__MAXNUMX) + 1 | |
| 366 | dy = int(len(self.y) / self.decimation) + 1 |
|
370 | dy = int(len(self.y) / self.decimation) + 1 | |
| 367 |
|
371 | |||
| 368 | # x = self.x[::dx] |
|
372 | # x = self.x[::dx] | |
| 369 | x = self.x |
|
373 | x = self.x | |
| 370 | y = self.y[::dy] |
|
374 | y = self.y[::dy] | |
| 371 | z = self.z[::, ::, ::dy] |
|
375 | z = self.z[::, ::, ::dy] | |
| 372 |
|
376 | |||
| 373 | return x, y, z |
|
377 | return x, y, z | |
| 374 |
|
378 | |||
| 375 | def format(self): |
|
379 | def format(self): | |
| 376 | ''' |
|
380 | ''' | |
| 377 | Set min and max values, labels, ticks and titles |
|
381 | Set min and max values, labels, ticks and titles | |
| 378 | ''' |
|
382 | ''' | |
| 379 |
|
383 | |||
| 380 | for n, ax in enumerate(self.axes): |
|
384 | for n, ax in enumerate(self.axes): | |
| 381 | if ax.firsttime: |
|
385 | if ax.firsttime: | |
| 382 | if self.xaxis != 'time': |
|
386 | if self.xaxis != 'time': | |
| 383 | xmin = self.xmin |
|
387 | xmin = self.xmin | |
| 384 | xmax = self.xmax |
|
388 | xmax = self.xmax | |
| 385 | else: |
|
389 | else: | |
| 386 | xmin = self.tmin |
|
390 | xmin = self.tmin | |
| 387 | xmax = self.tmin + self.xrange*60*60 |
|
391 | xmax = self.tmin + self.xrange*60*60 | |
| 388 | ax.xaxis.set_major_formatter(FuncFormatter(self.__fmtTime)) |
|
392 | ax.xaxis.set_major_formatter(FuncFormatter(self.__fmtTime)) | |
| 389 | ax.xaxis.set_major_locator(LinearLocator(9)) |
|
393 | ax.xaxis.set_major_locator(LinearLocator(9)) | |
| 390 | ymin = self.ymin if self.ymin is not None else numpy.nanmin(self.y[numpy.isfinite(self.y)]) |
|
394 | ymin = self.ymin if self.ymin is not None else numpy.nanmin(self.y[numpy.isfinite(self.y)]) | |
| 391 | ymax = self.ymax if self.ymax is not None else numpy.nanmax(self.y[numpy.isfinite(self.y)]) |
|
395 | ymax = self.ymax if self.ymax is not None else numpy.nanmax(self.y[numpy.isfinite(self.y)]) | |
| 392 | ax.set_facecolor(self.bgcolor) |
|
396 | ax.set_facecolor(self.bgcolor) | |
| 393 | if self.xscale: |
|
397 | if self.xscale: | |
| 394 | ax.xaxis.set_major_formatter(FuncFormatter( |
|
398 | ax.xaxis.set_major_formatter(FuncFormatter( | |
| 395 | lambda x, pos: '{0:g}'.format(x*self.xscale))) |
|
399 | lambda x, pos: '{0:g}'.format(x*self.xscale))) | |
| 396 | if self.yscale: |
|
400 | if self.yscale: | |
| 397 | ax.yaxis.set_major_formatter(FuncFormatter( |
|
401 | ax.yaxis.set_major_formatter(FuncFormatter( | |
| 398 | lambda x, pos: '{0:g}'.format(x*self.yscale))) |
|
402 | lambda x, pos: '{0:g}'.format(x*self.yscale))) | |
| 399 | if self.xlabel is not None: |
|
403 | if self.xlabel is not None: | |
| 400 | ax.set_xlabel(self.xlabel) |
|
404 | ax.set_xlabel(self.xlabel) | |
| 401 | if self.ylabel is not None: |
|
405 | if self.ylabel is not None: | |
| 402 | ax.set_ylabel(self.ylabel) |
|
406 | ax.set_ylabel(self.ylabel) | |
| 403 | if self.showprofile: |
|
407 | if self.showprofile: | |
| 404 | self.pf_axes[n].set_ylim(ymin, ymax) |
|
408 | self.pf_axes[n].set_ylim(ymin, ymax) | |
| 405 | self.pf_axes[n].set_xlim(self.zmin, self.zmax) |
|
409 | self.pf_axes[n].set_xlim(self.zmin, self.zmax) | |
| 406 | self.pf_axes[n].set_xlabel('dB') |
|
410 | self.pf_axes[n].set_xlabel('dB') | |
| 407 | self.pf_axes[n].grid(b=True, axis='x') |
|
411 | self.pf_axes[n].grid(b=True, axis='x') | |
| 408 | [tick.set_visible(False) |
|
412 | [tick.set_visible(False) | |
| 409 | for tick in self.pf_axes[n].get_yticklabels()] |
|
413 | for tick in self.pf_axes[n].get_yticklabels()] | |
| 410 | if self.colorbar: |
|
414 | if self.colorbar: | |
| 411 | ax.cbar = plt.colorbar( |
|
415 | ax.cbar = plt.colorbar( | |
| 412 | ax.plt, ax=ax, fraction=0.05, pad=0.02, aspect=10) |
|
416 | ax.plt, ax=ax, fraction=0.05, pad=0.02, aspect=10) | |
| 413 | ax.cbar.ax.tick_params(labelsize=8) |
|
417 | ax.cbar.ax.tick_params(labelsize=8) | |
| 414 | ax.cbar.ax.press = None |
|
418 | ax.cbar.ax.press = None | |
| 415 | if self.cb_label: |
|
419 | if self.cb_label: | |
| 416 | ax.cbar.set_label(self.cb_label, size=8) |
|
420 | ax.cbar.set_label(self.cb_label, size=8) | |
| 417 | elif self.cb_labels: |
|
421 | elif self.cb_labels: | |
| 418 | ax.cbar.set_label(self.cb_labels[n], size=8) |
|
422 | ax.cbar.set_label(self.cb_labels[n], size=8) | |
| 419 | else: |
|
423 | else: | |
| 420 | ax.cbar = None |
|
424 | ax.cbar = None | |
| 421 | ax.set_xlim(xmin, xmax) |
|
425 | ax.set_xlim(xmin, xmax) | |
| 422 | ax.set_ylim(ymin, ymax) |
|
426 | ax.set_ylim(ymin, ymax) | |
| 423 | ax.firsttime = False |
|
427 | ax.firsttime = False | |
| 424 | if self.grid: |
|
428 | if self.grid: | |
| 425 | ax.grid(True) |
|
429 | ax.grid(True) | |
| 426 | if not self.polar: |
|
430 | if not self.polar: | |
| 427 | ax.set_title('{} {} {}'.format( |
|
431 | ax.set_title('{} {} {}'.format( | |
| 428 | self.titles[n], |
|
432 | self.titles[n], | |
| 429 | self.getDateTime(self.data.max_time).strftime( |
|
433 | self.getDateTime(self.data.max_time).strftime( | |
| 430 | '%Y-%m-%d %H:%M:%S'), |
|
434 | '%Y-%m-%d %H:%M:%S'), | |
| 431 | self.time_label), |
|
435 | self.time_label), | |
| 432 | size=8) |
|
436 | size=8) | |
| 433 | else: |
|
437 | else: | |
| 434 | ax.set_title('{}'.format(self.titles[n]), size=8) |
|
438 | ax.set_title('{}'.format(self.titles[n]), size=8) | |
| 435 | ax.set_ylim(0, 90) |
|
439 | ax.set_ylim(0, 90) | |
| 436 | ax.set_yticks(numpy.arange(0, 90, 20)) |
|
440 | ax.set_yticks(numpy.arange(0, 90, 20)) | |
| 437 | ax.yaxis.labelpad = 40 |
|
441 | ax.yaxis.labelpad = 40 | |
| 438 |
|
442 | |||
| 439 | if self.firsttime: |
|
443 | if self.firsttime: | |
| 440 | for n, fig in enumerate(self.figures): |
|
444 | for n, fig in enumerate(self.figures): | |
| 441 | fig.subplots_adjust(**self.plots_adjust) |
|
445 | fig.subplots_adjust(**self.plots_adjust) | |
| 442 | self.firsttime = False |
|
446 | self.firsttime = False | |
| 443 |
|
447 | |||
| 444 | def clear_figures(self): |
|
448 | def clear_figures(self): | |
| 445 | ''' |
|
449 | ''' | |
| 446 | Reset axes for redraw plots |
|
450 | Reset axes for redraw plots | |
| 447 | ''' |
|
451 | ''' | |
| 448 |
|
452 | |||
| 449 | for ax in self.axes+self.pf_axes+self.cb_axes: |
|
453 | for ax in self.axes+self.pf_axes+self.cb_axes: | |
| 450 | ax.clear() |
|
454 | ax.clear() | |
| 451 | ax.firsttime = True |
|
455 | ax.firsttime = True | |
| 452 | if hasattr(ax, 'cbar') and ax.cbar: |
|
456 | if hasattr(ax, 'cbar') and ax.cbar: | |
| 453 | ax.cbar.remove() |
|
457 | ax.cbar.remove() | |
| 454 |
|
458 | |||
| 455 | def __plot(self): |
|
459 | def __plot(self): | |
| 456 | ''' |
|
460 | ''' | |
| 457 | Main function to plot, format and save figures |
|
461 | Main function to plot, format and save figures | |
| 458 | ''' |
|
462 | ''' | |
| 459 |
|
463 | |||
| 460 | self.plot() |
|
464 | self.plot() | |
| 461 | self.format() |
|
465 | self.format() | |
| 462 |
|
466 | |||
| 463 | for n, fig in enumerate(self.figures): |
|
467 | for n, fig in enumerate(self.figures): | |
| 464 | if self.nrows == 0 or self.nplots == 0: |
|
468 | if self.nrows == 0 or self.nplots == 0: | |
| 465 | log.warning('No data', self.name) |
|
469 | log.warning('No data', self.name) | |
| 466 | fig.text(0.5, 0.5, 'No Data', fontsize='large', ha='center') |
|
470 | fig.text(0.5, 0.5, 'No Data', fontsize='large', ha='center') | |
| 467 | fig.canvas.manager.set_window_title(self.CODE) |
|
471 | fig.canvas.manager.set_window_title(self.CODE) | |
| 468 | continue |
|
472 | continue | |
| 469 |
|
473 | |||
| 470 | fig.canvas.manager.set_window_title('{} - {}'.format(self.title, |
|
474 | fig.canvas.manager.set_window_title('{} - {}'.format(self.title, | |
| 471 | self.getDateTime(self.data.max_time).strftime('%Y/%m/%d'))) |
|
475 | self.getDateTime(self.data.max_time).strftime('%Y/%m/%d'))) | |
| 472 | fig.canvas.draw() |
|
476 | fig.canvas.draw() | |
| 473 | if self.show: |
|
477 | if self.show: | |
| 474 | fig.show() |
|
478 | fig.show() | |
| 475 | figpause(0.01) |
|
479 | figpause(0.01) | |
| 476 |
|
480 | |||
| 477 | if self.save: |
|
481 | if self.save: | |
| 478 | self.save_figure(n) |
|
482 | self.save_figure(n) | |
| 479 |
|
483 | |||
| 480 | if self.server: |
|
484 | if self.server: | |
| 481 | self.send_to_server() |
|
485 | self.send_to_server() | |
| 482 |
|
486 | |||
| 483 | def __update(self, dataOut, timestamp): |
|
487 | def __update(self, dataOut, timestamp): | |
| 484 | ''' |
|
488 | ''' | |
| 485 | ''' |
|
489 | ''' | |
| 486 |
|
490 | |||
| 487 | metadata = { |
|
491 | metadata = { | |
| 488 | 'yrange': dataOut.heightList, |
|
492 | 'yrange': dataOut.heightList, | |
| 489 | 'interval': dataOut.timeInterval, |
|
493 | 'interval': dataOut.timeInterval, | |
| 490 | 'channels': dataOut.channelList |
|
494 | 'channels': dataOut.channelList | |
| 491 | } |
|
495 | } | |
| 492 |
|
496 | |||
| 493 | data, meta = self.update(dataOut) |
|
497 | data, meta = self.update(dataOut) | |
| 494 | metadata.update(meta) |
|
498 | metadata.update(meta) | |
| 495 | self.data.update(data, timestamp, metadata) |
|
499 | self.data.update(data, timestamp, metadata) | |
| 496 |
|
500 | |||
| 497 | def save_figure(self, n): |
|
501 | def save_figure(self, n): | |
| 498 | ''' |
|
502 | ''' | |
| 499 | ''' |
|
503 | ''' | |
| 500 |
|
504 | |||
| 501 | if (self.data.max_time - self.save_time) <= self.save_period: |
|
505 | if (self.data.max_time - self.save_time) <= self.save_period: | |
| 502 | return |
|
506 | return | |
| 503 |
|
507 | |||
| 504 | self.save_time = self.data.max_time |
|
508 | self.save_time = self.data.max_time | |
| 505 |
|
509 | |||
| 506 | fig = self.figures[n] |
|
510 | fig = self.figures[n] | |
| 507 |
|
511 | |||
| 508 | if self.throttle == 0: |
|
512 | if self.throttle == 0: | |
| 509 | figname = os.path.join( |
|
513 | figname = os.path.join( | |
| 510 | self.save, |
|
514 | self.save, | |
| 511 | self.save_code, |
|
515 | self.save_code, | |
| 512 | '{}_{}.png'.format( |
|
516 | '{}_{}.png'.format( | |
| 513 | self.save_code, |
|
517 | self.save_code, | |
| 514 | self.getDateTime(self.data.max_time).strftime( |
|
518 | self.getDateTime(self.data.max_time).strftime( | |
| 515 | '%Y%m%d_%H%M%S' |
|
519 | '%Y%m%d_%H%M%S' | |
| 516 | ), |
|
520 | ), | |
| 517 | ) |
|
521 | ) | |
| 518 | ) |
|
522 | ) | |
| 519 | log.log('Saving figure: {}'.format(figname), self.name) |
|
523 | log.log('Saving figure: {}'.format(figname), self.name) | |
| 520 | if not os.path.isdir(os.path.dirname(figname)): |
|
524 | if not os.path.isdir(os.path.dirname(figname)): | |
| 521 | os.makedirs(os.path.dirname(figname)) |
|
525 | os.makedirs(os.path.dirname(figname)) | |
| 522 | fig.savefig(figname) |
|
526 | fig.savefig(figname) | |
| 523 |
|
527 | |||
| 524 | figname = os.path.join( |
|
528 | figname = os.path.join( | |
| 525 | self.save, |
|
529 | self.save, | |
|
|
530 | self.save_code, | |||
| 526 | '{}_{}.png'.format( |
|
531 | '{}_{}.png'.format( | |
| 527 | self.save_code, |
|
532 | self.save_code, | |
| 528 | self.getDateTime(self.data.min_time).strftime( |
|
533 | self.getDateTime(self.data.min_time).strftime( | |
| 529 | '%Y%m%d' |
|
534 | '%Y%m%d' | |
| 530 | ), |
|
535 | ), | |
| 531 | ) |
|
536 | ) | |
| 532 | ) |
|
537 | ) | |
| 533 | log.log('Saving figure: {}'.format(figname), self.name) |
|
538 | log.log('Saving figure: {}'.format(figname), self.name) | |
| 534 | if not os.path.isdir(os.path.dirname(figname)): |
|
539 | if not os.path.isdir(os.path.dirname(figname)): | |
| 535 | os.makedirs(os.path.dirname(figname)) |
|
540 | os.makedirs(os.path.dirname(figname)) | |
| 536 | fig.savefig(figname) |
|
541 | fig.savefig(figname) | |
| 537 |
|
542 | |||
| 538 | def send_to_server(self): |
|
543 | def send_to_server(self): | |
| 539 | ''' |
|
544 | ''' | |
| 540 | ''' |
|
545 | ''' | |
| 541 |
|
546 | |||
| 542 | if self.exp_code == None: |
|
547 | if self.exp_code == None: | |
| 543 | log.warning('Missing `exp_code` skipping sending to server...') |
|
548 | log.warning('Missing `exp_code` skipping sending to server...') | |
| 544 |
|
549 | |||
| 545 | last_time = self.data.max_time |
|
550 | last_time = self.data.max_time | |
| 546 | interval = last_time - self.sender_time |
|
551 | interval = last_time - self.sender_time | |
| 547 | if interval < self.sender_period: |
|
552 | if interval < self.sender_period: | |
| 548 | return |
|
553 | return | |
| 549 |
|
554 | |||
| 550 | self.sender_time = last_time |
|
555 | self.sender_time = last_time | |
| 551 |
|
556 | |||
| 552 | attrs = ['titles', 'zmin', 'zmax', 'tag', 'ymin', 'ymax'] |
|
557 | attrs = ['titles', 'zmin', 'zmax', 'tag', 'ymin', 'ymax'] | |
| 553 | for attr in attrs: |
|
558 | for attr in attrs: | |
| 554 | value = getattr(self, attr) |
|
559 | value = getattr(self, attr) | |
| 555 | if value: |
|
560 | if value: | |
| 556 | if isinstance(value, (numpy.float32, numpy.float64)): |
|
561 | if isinstance(value, (numpy.float32, numpy.float64)): | |
| 557 | value = round(float(value), 2) |
|
562 | value = round(float(value), 2) | |
| 558 | self.data.meta[attr] = value |
|
563 | self.data.meta[attr] = value | |
| 559 | if self.colormap == 'jet': |
|
564 | if self.colormap == 'jet': | |
| 560 | self.data.meta['colormap'] = 'Jet' |
|
565 | self.data.meta['colormap'] = 'Jet' | |
| 561 | elif 'RdBu' in self.colormap: |
|
566 | elif 'RdBu' in self.colormap: | |
| 562 | self.data.meta['colormap'] = 'RdBu' |
|
567 | self.data.meta['colormap'] = 'RdBu' | |
| 563 | else: |
|
568 | else: | |
| 564 | self.data.meta['colormap'] = 'Viridis' |
|
569 | self.data.meta['colormap'] = 'Viridis' | |
| 565 | self.data.meta['interval'] = int(interval) |
|
570 | self.data.meta['interval'] = int(interval) | |
| 566 |
|
571 | |||
| 567 | self.sender_queue.append(last_time) |
|
572 | self.sender_queue.append(last_time) | |
| 568 |
|
573 | |||
| 569 | while True: |
|
574 | while True: | |
| 570 | try: |
|
575 | try: | |
| 571 | tm = self.sender_queue.popleft() |
|
576 | tm = self.sender_queue.popleft() | |
| 572 | except IndexError: |
|
577 | except IndexError: | |
| 573 | break |
|
578 | break | |
| 574 | msg = self.data.jsonify(tm, self.save_code, self.plot_type) |
|
579 | msg = self.data.jsonify(tm, self.save_code, self.plot_type) | |
| 575 | self.socket.send_string(msg) |
|
580 | self.socket.send_string(msg) | |
| 576 | socks = dict(self.poll.poll(2000)) |
|
581 | socks = dict(self.poll.poll(2000)) | |
| 577 | if socks.get(self.socket) == zmq.POLLIN: |
|
582 | if socks.get(self.socket) == zmq.POLLIN: | |
| 578 | reply = self.socket.recv_string() |
|
583 | reply = self.socket.recv_string() | |
| 579 | if reply == 'ok': |
|
584 | if reply == 'ok': | |
| 580 | log.log("Response from server ok", self.name) |
|
585 | log.log("Response from server ok", self.name) | |
| 581 | time.sleep(0.1) |
|
586 | time.sleep(0.1) | |
| 582 | continue |
|
587 | continue | |
| 583 | else: |
|
588 | else: | |
| 584 | log.warning( |
|
589 | log.warning( | |
| 585 | "Malformed reply from server: {}".format(reply), self.name) |
|
590 | "Malformed reply from server: {}".format(reply), self.name) | |
| 586 | else: |
|
591 | else: | |
| 587 | log.warning( |
|
592 | log.warning( | |
| 588 | "No response from server, retrying...", self.name) |
|
593 | "No response from server, retrying...", self.name) | |
| 589 | self.sender_queue.appendleft(tm) |
|
594 | self.sender_queue.appendleft(tm) | |
| 590 | self.socket.setsockopt(zmq.LINGER, 0) |
|
595 | self.socket.setsockopt(zmq.LINGER, 0) | |
| 591 | self.socket.close() |
|
596 | self.socket.close() | |
| 592 | self.poll.unregister(self.socket) |
|
597 | self.poll.unregister(self.socket) | |
| 593 | self.socket = self.context.socket(zmq.REQ) |
|
598 | self.socket = self.context.socket(zmq.REQ) | |
| 594 | self.socket.connect(self.server) |
|
599 | self.socket.connect(self.server) | |
| 595 | self.poll.register(self.socket, zmq.POLLIN) |
|
600 | self.poll.register(self.socket, zmq.POLLIN) | |
| 596 | break |
|
601 | break | |
| 597 |
|
602 | |||
| 598 | def setup(self): |
|
603 | def setup(self): | |
| 599 | ''' |
|
604 | ''' | |
| 600 | This method should be implemented in the child class, the following |
|
605 | This method should be implemented in the child class, the following | |
| 601 | attributes should be set: |
|
606 | attributes should be set: | |
| 602 |
|
607 | |||
| 603 | self.nrows: number of rows |
|
608 | self.nrows: number of rows | |
| 604 | self.ncols: number of cols |
|
609 | self.ncols: number of cols | |
| 605 | self.nplots: number of plots (channels or pairs) |
|
610 | self.nplots: number of plots (channels or pairs) | |
| 606 | self.ylabel: label for Y axes |
|
611 | self.ylabel: label for Y axes | |
| 607 |
self.titles: list of axes title |
|
612 | self.titles: list of axes title | |
| 608 |
|
613 | |||
| 609 | ''' |
|
614 | ''' | |
| 610 | raise NotImplementedError |
|
615 | raise NotImplementedError | |
| 611 |
|
616 | |||
| 612 | def plot(self): |
|
617 | def plot(self): | |
| 613 | ''' |
|
618 | ''' | |
| 614 | Must be defined in the child class, the actual plotting method |
|
619 | Must be defined in the child class, the actual plotting method | |
| 615 | ''' |
|
620 | ''' | |
| 616 | raise NotImplementedError |
|
621 | raise NotImplementedError | |
| 617 |
|
622 | |||
| 618 | def update(self, dataOut): |
|
623 | def update(self, dataOut): | |
| 619 | ''' |
|
624 | ''' | |
| 620 | Must be defined in the child class, update self.data with new data |
|
625 | Must be defined in the child class, update self.data with new data | |
| 621 | ''' |
|
626 | ''' | |
| 622 |
|
627 | |||
| 623 | data = { |
|
628 | data = { | |
| 624 | self.CODE: getattr(dataOut, 'data_{}'.format(self.CODE)) |
|
629 | self.CODE: getattr(dataOut, 'data_{}'.format(self.CODE)) | |
| 625 | } |
|
630 | } | |
| 626 | meta = {} |
|
631 | meta = {} | |
| 627 |
|
632 | |||
| 628 | return data, meta |
|
633 | return data, meta | |
| 629 |
|
634 | |||
| 630 | def run(self, dataOut, **kwargs): |
|
635 | def run(self, dataOut, **kwargs): | |
| 631 | ''' |
|
636 | ''' | |
| 632 | Main plotting routine |
|
637 | Main plotting routine | |
| 633 | ''' |
|
638 | ''' | |
| 634 |
|
639 | |||
| 635 | if self.isConfig is False: |
|
640 | if self.isConfig is False: | |
| 636 | self.__setup(**kwargs) |
|
641 | self.__setup(**kwargs) | |
| 637 |
|
642 | |||
| 638 | if self.localtime: |
|
643 | if self.localtime: | |
| 639 | self.getDateTime = datetime.datetime.fromtimestamp |
|
644 | self.getDateTime = datetime.datetime.fromtimestamp | |
| 640 | else: |
|
645 | else: | |
| 641 | self.getDateTime = datetime.datetime.utcfromtimestamp |
|
646 | self.getDateTime = datetime.datetime.utcfromtimestamp | |
| 642 |
|
647 | |||
| 643 | self.data.setup() |
|
648 | self.data.setup() | |
| 644 | self.isConfig = True |
|
649 | self.isConfig = True | |
| 645 | if self.server: |
|
650 | if self.server: | |
| 646 | self.context = zmq.Context() |
|
651 | self.context = zmq.Context() | |
| 647 | self.socket = self.context.socket(zmq.REQ) |
|
652 | self.socket = self.context.socket(zmq.REQ) | |
| 648 | self.socket.connect(self.server) |
|
653 | self.socket.connect(self.server) | |
| 649 | self.poll = zmq.Poller() |
|
654 | self.poll = zmq.Poller() | |
| 650 | self.poll.register(self.socket, zmq.POLLIN) |
|
655 | self.poll.register(self.socket, zmq.POLLIN) | |
| 651 |
|
656 | |||
| 652 | tm = getattr(dataOut, self.attr_time) |
|
657 | tm = getattr(dataOut, self.attr_time) | |
| 653 |
|
658 | |||
| 654 | if self.data and 'time' in self.xaxis and (tm - self.tmin) >= self.xrange*60*60: |
|
659 | if self.data and 'time' in self.xaxis and (tm - self.tmin) >= self.xrange*60*60: | |
| 655 | self.save_time = tm |
|
660 | self.save_time = tm | |
| 656 | self.__plot() |
|
661 | self.__plot() | |
| 657 | self.tmin += self.xrange*60*60 |
|
662 | self.tmin += self.xrange*60*60 | |
| 658 | self.data.setup() |
|
663 | self.data.setup() | |
| 659 | self.clear_figures() |
|
664 | self.clear_figures() | |
| 660 |
|
665 | |||
| 661 | self.__update(dataOut, tm) |
|
666 | self.__update(dataOut, tm) | |
| 662 |
|
667 | |||
| 663 | if self.isPlotConfig is False: |
|
668 | if self.isPlotConfig is False: | |
| 664 | self.__setup_plot() |
|
669 | self.__setup_plot() | |
| 665 | self.isPlotConfig = True |
|
670 | self.isPlotConfig = True | |
| 666 | if self.xaxis == 'time': |
|
671 | if self.xaxis == 'time': | |
| 667 | dt = self.getDateTime(tm) |
|
672 | dt = self.getDateTime(tm) | |
| 668 | if self.xmin is None: |
|
673 | if self.xmin is None: | |
| 669 | self.tmin = tm |
|
674 | self.tmin = tm | |
| 670 |
self.xmin = dt.hour |
|
675 | self.xmin = dt.hour | |
| 671 | minutes = (self.xmin-int(self.xmin)) * 60 |
|
676 | minutes = (self.xmin-int(self.xmin)) * 60 | |
| 672 | seconds = (minutes - int(minutes)) * 60 |
|
677 | seconds = (minutes - int(minutes)) * 60 | |
| 673 | self.tmin = (dt.replace(hour=int(self.xmin), minute=int(minutes), second=int(seconds)) - |
|
678 | self.tmin = (dt.replace(hour=int(self.xmin), minute=int(minutes), second=int(seconds)) - | |
| 674 | datetime.datetime(1970, 1, 1)).total_seconds() |
|
679 | datetime.datetime(1970, 1, 1)).total_seconds() | |
| 675 | if self.localtime: |
|
680 | if self.localtime: | |
| 676 | self.tmin += time.timezone |
|
681 | self.tmin += time.timezone | |
| 677 |
|
682 | |||
| 678 | if self.xmin is not None and self.xmax is not None: |
|
683 | if self.xmin is not None and self.xmax is not None: | |
| 679 | self.xrange = self.xmax - self.xmin |
|
684 | self.xrange = self.xmax - self.xmin | |
| 680 |
|
685 | |||
| 681 | if self.throttle == 0: |
|
686 | if self.throttle == 0: | |
| 682 | self.__plot() |
|
687 | self.__plot() | |
| 683 | else: |
|
688 | else: | |
| 684 | self.__throttle_plot(self.__plot)#, coerce=coerce) |
|
689 | self.__throttle_plot(self.__plot)#, coerce=coerce) | |
| 685 |
|
690 | |||
| 686 | def close(self): |
|
691 | def close(self): | |
| 687 |
|
692 | |||
| 688 | if self.data and not self.data.flagNoData: |
|
693 | if self.data and not self.data.flagNoData: | |
| 689 | self.save_time = 0 |
|
694 | self.save_time = 0 | |
| 690 | self.__plot() |
|
695 | self.__plot() | |
| 691 | if self.data and not self.data.flagNoData and self.pause: |
|
696 | if self.data and not self.data.flagNoData and self.pause: | |
| 692 | figpause(10) |
|
697 | figpause(10) | |
| 693 |
|
||||
| @@ -1,370 +1,381 | |||||
| 1 | import os |
|
1 | import os | |
| 2 | import datetime |
|
2 | import datetime | |
| 3 | import numpy |
|
3 | import numpy | |
| 4 |
|
4 | |||
| 5 | from schainpy.model.graphics.jroplot_base import Plot, plt |
|
5 | from schainpy.model.graphics.jroplot_base import Plot, plt | |
| 6 | from schainpy.model.graphics.jroplot_spectra import SpectraPlot, RTIPlot, CoherencePlot, SpectraCutPlot |
|
6 | from schainpy.model.graphics.jroplot_spectra import SpectraPlot, RTIPlot, CoherencePlot, SpectraCutPlot | |
| 7 | from schainpy.utils import log |
|
7 | from schainpy.utils import log | |
| 8 |
|
8 | |||
| 9 | EARTH_RADIUS = 6.3710e3 |
|
9 | EARTH_RADIUS = 6.3710e3 | |
| 10 |
|
10 | |||
| 11 |
|
11 | |||
| 12 | def ll2xy(lat1, lon1, lat2, lon2): |
|
12 | def ll2xy(lat1, lon1, lat2, lon2): | |
| 13 |
|
13 | |||
| 14 | p = 0.017453292519943295 |
|
14 | p = 0.017453292519943295 | |
| 15 | a = 0.5 - numpy.cos((lat2 - lat1) * p)/2 + numpy.cos(lat1 * p) * \ |
|
15 | a = 0.5 - numpy.cos((lat2 - lat1) * p)/2 + numpy.cos(lat1 * p) * \ | |
| 16 | numpy.cos(lat2 * p) * (1 - numpy.cos((lon2 - lon1) * p)) / 2 |
|
16 | numpy.cos(lat2 * p) * (1 - numpy.cos((lon2 - lon1) * p)) / 2 | |
| 17 | r = 12742 * numpy.arcsin(numpy.sqrt(a)) |
|
17 | r = 12742 * numpy.arcsin(numpy.sqrt(a)) | |
| 18 | theta = numpy.arctan2(numpy.sin((lon2-lon1)*p)*numpy.cos(lat2*p), numpy.cos(lat1*p) |
|
18 | theta = numpy.arctan2(numpy.sin((lon2-lon1)*p)*numpy.cos(lat2*p), numpy.cos(lat1*p) | |
| 19 | * numpy.sin(lat2*p)-numpy.sin(lat1*p)*numpy.cos(lat2*p)*numpy.cos((lon2-lon1)*p)) |
|
19 | * numpy.sin(lat2*p)-numpy.sin(lat1*p)*numpy.cos(lat2*p)*numpy.cos((lon2-lon1)*p)) | |
| 20 | theta = -theta + numpy.pi/2 |
|
20 | theta = -theta + numpy.pi/2 | |
| 21 | return r*numpy.cos(theta), r*numpy.sin(theta) |
|
21 | return r*numpy.cos(theta), r*numpy.sin(theta) | |
| 22 |
|
22 | |||
| 23 |
|
23 | |||
| 24 | def km2deg(km): |
|
24 | def km2deg(km): | |
| 25 | ''' |
|
25 | ''' | |
| 26 | Convert distance in km to degrees |
|
26 | Convert distance in km to degrees | |
| 27 | ''' |
|
27 | ''' | |
| 28 |
|
28 | |||
| 29 | return numpy.rad2deg(km/EARTH_RADIUS) |
|
29 | return numpy.rad2deg(km/EARTH_RADIUS) | |
| 30 |
|
30 | |||
| 31 |
|
31 | |||
| 32 |
|
32 | |||
| 33 | class SpectralMomentsPlot(SpectraPlot): |
|
33 | class SpectralMomentsPlot(SpectraPlot): | |
| 34 | ''' |
|
34 | ''' | |
| 35 | Plot for Spectral Moments |
|
35 | Plot for Spectral Moments | |
| 36 | ''' |
|
36 | ''' | |
| 37 | CODE = 'spc_moments' |
|
37 | CODE = 'spc_moments' | |
| 38 | # colormap = 'jet' |
|
38 | # colormap = 'jet' | |
| 39 | # plot_type = 'pcolor' |
|
39 | # plot_type = 'pcolor' | |
| 40 |
|
40 | |||
| 41 | class DobleGaussianPlot(SpectraPlot): |
|
41 | class DobleGaussianPlot(SpectraPlot): | |
| 42 | ''' |
|
42 | ''' | |
| 43 | Plot for Double Gaussian Plot |
|
43 | Plot for Double Gaussian Plot | |
| 44 | ''' |
|
44 | ''' | |
| 45 | CODE = 'gaussian_fit' |
|
45 | CODE = 'gaussian_fit' | |
| 46 | # colormap = 'jet' |
|
46 | # colormap = 'jet' | |
| 47 | # plot_type = 'pcolor' |
|
47 | # plot_type = 'pcolor' | |
| 48 |
|
48 | |||
|
|
49 | ||||
| 49 | class DoubleGaussianSpectraCutPlot(SpectraCutPlot): |
|
50 | class DoubleGaussianSpectraCutPlot(SpectraCutPlot): | |
| 50 | ''' |
|
51 | ''' | |
| 51 | Plot SpectraCut with Double Gaussian Fit |
|
52 | Plot SpectraCut with Double Gaussian Fit | |
| 52 | ''' |
|
53 | ''' | |
| 53 | CODE = 'cut_gaussian_fit' |
|
54 | CODE = 'cut_gaussian_fit' | |
| 54 |
|
55 | |||
|
|
56 | ||||
|
|
57 | class SpectralFitObliquePlot(SpectraPlot): | |||
|
|
58 | ''' | |||
|
|
59 | Plot for Spectral Oblique | |||
|
|
60 | ''' | |||
|
|
61 | CODE = 'spc_moments' | |||
|
|
62 | colormap = 'jet' | |||
|
|
63 | plot_type = 'pcolor' | |||
|
|
64 | ||||
|
|
65 | ||||
|
|
66 | ||||
| 55 | class SnrPlot(RTIPlot): |
|
67 | class SnrPlot(RTIPlot): | |
| 56 | ''' |
|
68 | ''' | |
| 57 | Plot for SNR Data |
|
69 | Plot for SNR Data | |
| 58 | ''' |
|
70 | ''' | |
| 59 |
|
71 | |||
| 60 | CODE = 'snr' |
|
72 | CODE = 'snr' | |
| 61 | colormap = 'jet' |
|
73 | colormap = 'jet' | |
| 62 |
|
74 | |||
| 63 | def update(self, dataOut): |
|
75 | def update(self, dataOut): | |
| 64 |
|
76 | |||
| 65 | data = { |
|
77 | data = { | |
| 66 | 'snr': 10*numpy.log10(dataOut.data_snr) |
|
78 | 'snr': 10*numpy.log10(dataOut.data_snr) | |
| 67 | } |
|
79 | } | |
| 68 |
|
80 | |||
| 69 | return data, {} |
|
81 | return data, {} | |
| 70 |
|
82 | |||
| 71 | class DopplerPlot(RTIPlot): |
|
83 | class DopplerPlot(RTIPlot): | |
| 72 | ''' |
|
84 | ''' | |
| 73 | Plot for DOPPLER Data (1st moment) |
|
85 | Plot for DOPPLER Data (1st moment) | |
| 74 | ''' |
|
86 | ''' | |
| 75 |
|
87 | |||
| 76 | CODE = 'dop' |
|
88 | CODE = 'dop' | |
| 77 | colormap = 'jet' |
|
89 | colormap = 'jet' | |
| 78 |
|
90 | |||
| 79 | def update(self, dataOut): |
|
91 | def update(self, dataOut): | |
| 80 |
|
92 | |||
| 81 | data = { |
|
93 | data = { | |
| 82 | 'dop': 10*numpy.log10(dataOut.data_dop) |
|
94 | 'dop': 10*numpy.log10(dataOut.data_dop) | |
| 83 | } |
|
95 | } | |
| 84 |
|
96 | |||
| 85 | return data, {} |
|
97 | return data, {} | |
| 86 |
|
98 | |||
| 87 | class PowerPlot(RTIPlot): |
|
99 | class PowerPlot(RTIPlot): | |
| 88 | ''' |
|
100 | ''' | |
| 89 | Plot for Power Data (0 moment) |
|
101 | Plot for Power Data (0 moment) | |
| 90 | ''' |
|
102 | ''' | |
| 91 |
|
103 | |||
| 92 | CODE = 'pow' |
|
104 | CODE = 'pow' | |
| 93 | colormap = 'jet' |
|
105 | colormap = 'jet' | |
| 94 |
|
106 | |||
| 95 | def update(self, dataOut): |
|
107 | def update(self, dataOut): | |
| 96 |
|
108 | |||
| 97 | data = { |
|
109 | data = { | |
| 98 | 'pow': 10*numpy.log10(dataOut.data_pow/dataOut.normFactor) |
|
110 | 'pow': 10*numpy.log10(dataOut.data_pow/dataOut.normFactor) | |
| 99 | } |
|
111 | } | |
| 100 |
|
112 | |||
| 101 | return data, {} |
|
113 | return data, {} | |
| 102 |
|
114 | |||
| 103 | class SpectralWidthPlot(RTIPlot): |
|
115 | class SpectralWidthPlot(RTIPlot): | |
| 104 | ''' |
|
116 | ''' | |
| 105 | Plot for Spectral Width Data (2nd moment) |
|
117 | Plot for Spectral Width Data (2nd moment) | |
| 106 | ''' |
|
118 | ''' | |
| 107 |
|
119 | |||
| 108 | CODE = 'width' |
|
120 | CODE = 'width' | |
| 109 | colormap = 'jet' |
|
121 | colormap = 'jet' | |
| 110 |
|
122 | |||
| 111 | def update(self, dataOut): |
|
123 | def update(self, dataOut): | |
| 112 |
|
124 | |||
| 113 | data = { |
|
125 | data = { | |
| 114 | 'width': dataOut.data_width |
|
126 | 'width': dataOut.data_width | |
| 115 | } |
|
127 | } | |
| 116 |
|
128 | |||
| 117 | return data, {} |
|
129 | return data, {} | |
| 118 |
|
130 | |||
| 119 | class SkyMapPlot(Plot): |
|
131 | class SkyMapPlot(Plot): | |
| 120 | ''' |
|
132 | ''' | |
| 121 | Plot for meteors detection data |
|
133 | Plot for meteors detection data | |
| 122 | ''' |
|
134 | ''' | |
| 123 |
|
135 | |||
| 124 | CODE = 'param' |
|
136 | CODE = 'param' | |
| 125 |
|
137 | |||
| 126 | def setup(self): |
|
138 | def setup(self): | |
| 127 |
|
139 | |||
| 128 | self.ncols = 1 |
|
140 | self.ncols = 1 | |
| 129 | self.nrows = 1 |
|
141 | self.nrows = 1 | |
| 130 | self.width = 7.2 |
|
142 | self.width = 7.2 | |
| 131 | self.height = 7.2 |
|
143 | self.height = 7.2 | |
| 132 | self.nplots = 1 |
|
144 | self.nplots = 1 | |
| 133 | self.xlabel = 'Zonal Zenith Angle (deg)' |
|
145 | self.xlabel = 'Zonal Zenith Angle (deg)' | |
| 134 | self.ylabel = 'Meridional Zenith Angle (deg)' |
|
146 | self.ylabel = 'Meridional Zenith Angle (deg)' | |
| 135 | self.polar = True |
|
147 | self.polar = True | |
| 136 | self.ymin = -180 |
|
148 | self.ymin = -180 | |
| 137 | self.ymax = 180 |
|
149 | self.ymax = 180 | |
| 138 | self.colorbar = False |
|
150 | self.colorbar = False | |
| 139 |
|
151 | |||
| 140 | def plot(self): |
|
152 | def plot(self): | |
| 141 |
|
153 | |||
| 142 | arrayParameters = numpy.concatenate(self.data['param']) |
|
154 | arrayParameters = numpy.concatenate(self.data['param']) | |
| 143 | error = arrayParameters[:, -1] |
|
155 | error = arrayParameters[:, -1] | |
| 144 | indValid = numpy.where(error == 0)[0] |
|
156 | indValid = numpy.where(error == 0)[0] | |
| 145 | finalMeteor = arrayParameters[indValid, :] |
|
157 | finalMeteor = arrayParameters[indValid, :] | |
| 146 | finalAzimuth = finalMeteor[:, 3] |
|
158 | finalAzimuth = finalMeteor[:, 3] | |
| 147 | finalZenith = finalMeteor[:, 4] |
|
159 | finalZenith = finalMeteor[:, 4] | |
| 148 |
|
160 | |||
| 149 | x = finalAzimuth * numpy.pi / 180 |
|
161 | x = finalAzimuth * numpy.pi / 180 | |
| 150 | y = finalZenith |
|
162 | y = finalZenith | |
| 151 |
|
163 | |||
| 152 | ax = self.axes[0] |
|
164 | ax = self.axes[0] | |
| 153 |
|
165 | |||
| 154 | if ax.firsttime: |
|
166 | if ax.firsttime: | |
| 155 | ax.plot = ax.plot(x, y, 'bo', markersize=5)[0] |
|
167 | ax.plot = ax.plot(x, y, 'bo', markersize=5)[0] | |
| 156 | else: |
|
168 | else: | |
| 157 | ax.plot.set_data(x, y) |
|
169 | ax.plot.set_data(x, y) | |
| 158 |
|
170 | |||
| 159 | dt1 = self.getDateTime(self.data.min_time).strftime('%y/%m/%d %H:%M:%S') |
|
171 | dt1 = self.getDateTime(self.data.min_time).strftime('%y/%m/%d %H:%M:%S') | |
| 160 | dt2 = self.getDateTime(self.data.max_time).strftime('%y/%m/%d %H:%M:%S') |
|
172 | dt2 = self.getDateTime(self.data.max_time).strftime('%y/%m/%d %H:%M:%S') | |
| 161 | title = 'Meteor Detection Sky Map\n %s - %s \n Number of events: %5.0f\n' % (dt1, |
|
173 | title = 'Meteor Detection Sky Map\n %s - %s \n Number of events: %5.0f\n' % (dt1, | |
| 162 | dt2, |
|
174 | dt2, | |
| 163 | len(x)) |
|
175 | len(x)) | |
| 164 | self.titles[0] = title |
|
176 | self.titles[0] = title | |
| 165 |
|
177 | |||
| 166 |
|
178 | |||
| 167 | class GenericRTIPlot(Plot): |
|
179 | class GenericRTIPlot(Plot): | |
| 168 | ''' |
|
180 | ''' | |
| 169 | Plot for data_xxxx object |
|
181 | Plot for data_xxxx object | |
| 170 | ''' |
|
182 | ''' | |
| 171 |
|
183 | |||
| 172 | CODE = 'param' |
|
184 | CODE = 'param' | |
| 173 | colormap = 'viridis' |
|
185 | colormap = 'viridis' | |
| 174 | plot_type = 'pcolorbuffer' |
|
186 | plot_type = 'pcolorbuffer' | |
| 175 |
|
187 | |||
| 176 | def setup(self): |
|
188 | def setup(self): | |
| 177 | self.xaxis = 'time' |
|
189 | self.xaxis = 'time' | |
| 178 | self.ncols = 1 |
|
190 | self.ncols = 1 | |
| 179 | self.nrows = self.data.shape('param')[0] |
|
191 | self.nrows = self.data.shape('param')[0] | |
| 180 | self.nplots = self.nrows |
|
192 | self.nplots = self.nrows | |
| 181 | self.plots_adjust.update({'hspace':0.8, 'left': 0.1, 'bottom': 0.08, 'right':0.95, 'top': 0.95}) |
|
193 | self.plots_adjust.update({'hspace':0.8, 'left': 0.1, 'bottom': 0.08, 'right':0.95, 'top': 0.95}) | |
| 182 |
|
194 | |||
| 183 | if not self.xlabel: |
|
195 | if not self.xlabel: | |
| 184 | self.xlabel = 'Time' |
|
196 | self.xlabel = 'Time' | |
| 185 |
|
197 | |||
| 186 | self.ylabel = 'Range [km]' |
|
198 | self.ylabel = 'Range [km]' | |
| 187 | if not self.titles: |
|
199 | if not self.titles: | |
| 188 | self.titles = ['Param {}'.format(x) for x in range(self.nrows)] |
|
200 | self.titles = ['Param {}'.format(x) for x in range(self.nrows)] | |
| 189 |
|
201 | |||
| 190 | def update(self, dataOut): |
|
202 | def update(self, dataOut): | |
| 191 |
|
203 | |||
| 192 | data = { |
|
204 | data = { | |
| 193 | 'param' : numpy.concatenate([getattr(dataOut, attr) for attr in self.attr_data], axis=0) |
|
205 | 'param' : numpy.concatenate([getattr(dataOut, attr) for attr in self.attr_data], axis=0) | |
| 194 | } |
|
206 | } | |
| 195 |
|
207 | |||
| 196 | meta = {} |
|
208 | meta = {} | |
| 197 |
|
209 | |||
| 198 | return data, meta |
|
210 | return data, meta | |
| 199 |
|
211 | |||
| 200 | def plot(self): |
|
212 | def plot(self): | |
| 201 | # self.data.normalize_heights() |
|
213 | # self.data.normalize_heights() | |
| 202 | self.x = self.data.times |
|
214 | self.x = self.data.times | |
| 203 | self.y = self.data.yrange |
|
215 | self.y = self.data.yrange | |
| 204 | self.z = self.data['param'] |
|
216 | self.z = self.data['param'] | |
| 205 |
|
217 | |||
| 206 | self.z = numpy.ma.masked_invalid(self.z) |
|
218 | self.z = numpy.ma.masked_invalid(self.z) | |
| 207 |
|
219 | |||
| 208 | if self.decimation is None: |
|
220 | if self.decimation is None: | |
| 209 | x, y, z = self.fill_gaps(self.x, self.y, self.z) |
|
221 | x, y, z = self.fill_gaps(self.x, self.y, self.z) | |
| 210 | else: |
|
222 | else: | |
| 211 | x, y, z = self.fill_gaps(*self.decimate()) |
|
223 | x, y, z = self.fill_gaps(*self.decimate()) | |
| 212 |
|
224 | |||
| 213 | for n, ax in enumerate(self.axes): |
|
225 | for n, ax in enumerate(self.axes): | |
| 214 |
|
226 | |||
| 215 | self.zmax = self.zmax if self.zmax is not None else numpy.max( |
|
227 | self.zmax = self.zmax if self.zmax is not None else numpy.max( | |
| 216 | self.z[n]) |
|
228 | self.z[n]) | |
| 217 | self.zmin = self.zmin if self.zmin is not None else numpy.min( |
|
229 | self.zmin = self.zmin if self.zmin is not None else numpy.min( | |
| 218 | self.z[n]) |
|
230 | self.z[n]) | |
| 219 |
|
231 | |||
| 220 | if ax.firsttime: |
|
232 | if ax.firsttime: | |
| 221 | if self.zlimits is not None: |
|
233 | if self.zlimits is not None: | |
| 222 | self.zmin, self.zmax = self.zlimits[n] |
|
234 | self.zmin, self.zmax = self.zlimits[n] | |
| 223 |
|
235 | |||
| 224 | ax.plt = ax.pcolormesh(x, y, z[n].T * self.factors[n], |
|
236 | ax.plt = ax.pcolormesh(x, y, z[n].T * self.factors[n], | |
| 225 | vmin=self.zmin, |
|
237 | vmin=self.zmin, | |
| 226 | vmax=self.zmax, |
|
238 | vmax=self.zmax, | |
| 227 | cmap=self.cmaps[n] |
|
239 | cmap=self.cmaps[n] | |
| 228 | ) |
|
240 | ) | |
| 229 | else: |
|
241 | else: | |
| 230 | if self.zlimits is not None: |
|
242 | if self.zlimits is not None: | |
| 231 | self.zmin, self.zmax = self.zlimits[n] |
|
243 | self.zmin, self.zmax = self.zlimits[n] | |
| 232 | ax.collections.remove(ax.collections[0]) |
|
244 | ax.collections.remove(ax.collections[0]) | |
| 233 | ax.plt = ax.pcolormesh(x, y, z[n].T * self.factors[n], |
|
245 | ax.plt = ax.pcolormesh(x, y, z[n].T * self.factors[n], | |
| 234 | vmin=self.zmin, |
|
246 | vmin=self.zmin, | |
| 235 | vmax=self.zmax, |
|
247 | vmax=self.zmax, | |
| 236 | cmap=self.cmaps[n] |
|
248 | cmap=self.cmaps[n] | |
| 237 | ) |
|
249 | ) | |
| 238 |
|
250 | |||
| 239 |
|
251 | |||
| 240 | class PolarMapPlot(Plot): |
|
252 | class PolarMapPlot(Plot): | |
| 241 | ''' |
|
253 | ''' | |
| 242 | Plot for weather radar |
|
254 | Plot for weather radar | |
| 243 | ''' |
|
255 | ''' | |
| 244 |
|
256 | |||
| 245 | CODE = 'param' |
|
257 | CODE = 'param' | |
| 246 | colormap = 'seismic' |
|
258 | colormap = 'seismic' | |
| 247 |
|
259 | |||
| 248 | def setup(self): |
|
260 | def setup(self): | |
| 249 | self.ncols = 1 |
|
261 | self.ncols = 1 | |
| 250 | self.nrows = 1 |
|
262 | self.nrows = 1 | |
| 251 | self.width = 9 |
|
263 | self.width = 9 | |
| 252 | self.height = 8 |
|
264 | self.height = 8 | |
| 253 | self.mode = self.data.meta['mode'] |
|
265 | self.mode = self.data.meta['mode'] | |
| 254 | if self.channels is not None: |
|
266 | if self.channels is not None: | |
| 255 | self.nplots = len(self.channels) |
|
267 | self.nplots = len(self.channels) | |
| 256 | self.nrows = len(self.channels) |
|
268 | self.nrows = len(self.channels) | |
| 257 | else: |
|
269 | else: | |
| 258 | self.nplots = self.data.shape(self.CODE)[0] |
|
270 | self.nplots = self.data.shape(self.CODE)[0] | |
| 259 | self.nrows = self.nplots |
|
271 | self.nrows = self.nplots | |
| 260 | self.channels = list(range(self.nplots)) |
|
272 | self.channels = list(range(self.nplots)) | |
| 261 | if self.mode == 'E': |
|
273 | if self.mode == 'E': | |
| 262 | self.xlabel = 'Longitude' |
|
274 | self.xlabel = 'Longitude' | |
| 263 | self.ylabel = 'Latitude' |
|
275 | self.ylabel = 'Latitude' | |
| 264 | else: |
|
276 | else: | |
| 265 | self.xlabel = 'Range (km)' |
|
277 | self.xlabel = 'Range (km)' | |
| 266 | self.ylabel = 'Height (km)' |
|
278 | self.ylabel = 'Height (km)' | |
| 267 | self.bgcolor = 'white' |
|
279 | self.bgcolor = 'white' | |
| 268 | self.cb_labels = self.data.meta['units'] |
|
280 | self.cb_labels = self.data.meta['units'] | |
| 269 | self.lat = self.data.meta['latitude'] |
|
281 | self.lat = self.data.meta['latitude'] | |
| 270 | self.lon = self.data.meta['longitude'] |
|
282 | self.lon = self.data.meta['longitude'] | |
| 271 | self.xmin, self.xmax = float( |
|
283 | self.xmin, self.xmax = float( | |
| 272 | km2deg(self.xmin) + self.lon), float(km2deg(self.xmax) + self.lon) |
|
284 | km2deg(self.xmin) + self.lon), float(km2deg(self.xmax) + self.lon) | |
| 273 | self.ymin, self.ymax = float( |
|
285 | self.ymin, self.ymax = float( | |
| 274 | km2deg(self.ymin) + self.lat), float(km2deg(self.ymax) + self.lat) |
|
286 | km2deg(self.ymin) + self.lat), float(km2deg(self.ymax) + self.lat) | |
| 275 | # self.polar = True |
|
287 | # self.polar = True | |
| 276 |
|
288 | |||
| 277 | def plot(self): |
|
289 | def plot(self): | |
| 278 |
|
290 | |||
| 279 | for n, ax in enumerate(self.axes): |
|
291 | for n, ax in enumerate(self.axes): | |
| 280 | data = self.data['param'][self.channels[n]] |
|
292 | data = self.data['param'][self.channels[n]] | |
| 281 |
|
293 | |||
| 282 | zeniths = numpy.linspace( |
|
294 | zeniths = numpy.linspace( | |
| 283 | 0, self.data.meta['max_range'], data.shape[1]) |
|
295 | 0, self.data.meta['max_range'], data.shape[1]) | |
| 284 | if self.mode == 'E': |
|
296 | if self.mode == 'E': | |
| 285 | azimuths = -numpy.radians(self.data.yrange)+numpy.pi/2 |
|
297 | azimuths = -numpy.radians(self.data.yrange)+numpy.pi/2 | |
| 286 | r, theta = numpy.meshgrid(zeniths, azimuths) |
|
298 | r, theta = numpy.meshgrid(zeniths, azimuths) | |
| 287 | x, y = r*numpy.cos(theta)*numpy.cos(numpy.radians(self.data.meta['elevation'])), r*numpy.sin( |
|
299 | x, y = r*numpy.cos(theta)*numpy.cos(numpy.radians(self.data.meta['elevation'])), r*numpy.sin( | |
| 288 | theta)*numpy.cos(numpy.radians(self.data.meta['elevation'])) |
|
300 | theta)*numpy.cos(numpy.radians(self.data.meta['elevation'])) | |
| 289 | x = km2deg(x) + self.lon |
|
301 | x = km2deg(x) + self.lon | |
| 290 | y = km2deg(y) + self.lat |
|
302 | y = km2deg(y) + self.lat | |
| 291 | else: |
|
303 | else: | |
| 292 | azimuths = numpy.radians(self.data.yrange) |
|
304 | azimuths = numpy.radians(self.data.yrange) | |
| 293 | r, theta = numpy.meshgrid(zeniths, azimuths) |
|
305 | r, theta = numpy.meshgrid(zeniths, azimuths) | |
| 294 | x, y = r*numpy.cos(theta), r*numpy.sin(theta) |
|
306 | x, y = r*numpy.cos(theta), r*numpy.sin(theta) | |
| 295 | self.y = zeniths |
|
307 | self.y = zeniths | |
| 296 |
|
308 | |||
| 297 | if ax.firsttime: |
|
309 | if ax.firsttime: | |
| 298 | if self.zlimits is not None: |
|
310 | if self.zlimits is not None: | |
| 299 | self.zmin, self.zmax = self.zlimits[n] |
|
311 | self.zmin, self.zmax = self.zlimits[n] | |
| 300 | ax.plt = ax.pcolormesh( # r, theta, numpy.ma.array(data, mask=numpy.isnan(data)), |
|
312 | ax.plt = ax.pcolormesh( # r, theta, numpy.ma.array(data, mask=numpy.isnan(data)), | |
| 301 | x, y, numpy.ma.array(data, mask=numpy.isnan(data)), |
|
313 | x, y, numpy.ma.array(data, mask=numpy.isnan(data)), | |
| 302 | vmin=self.zmin, |
|
314 | vmin=self.zmin, | |
| 303 | vmax=self.zmax, |
|
315 | vmax=self.zmax, | |
| 304 | cmap=self.cmaps[n]) |
|
316 | cmap=self.cmaps[n]) | |
| 305 | else: |
|
317 | else: | |
| 306 | if self.zlimits is not None: |
|
318 | if self.zlimits is not None: | |
| 307 | self.zmin, self.zmax = self.zlimits[n] |
|
319 | self.zmin, self.zmax = self.zlimits[n] | |
| 308 | ax.collections.remove(ax.collections[0]) |
|
320 | ax.collections.remove(ax.collections[0]) | |
| 309 | ax.plt = ax.pcolormesh( # r, theta, numpy.ma.array(data, mask=numpy.isnan(data)), |
|
321 | ax.plt = ax.pcolormesh( # r, theta, numpy.ma.array(data, mask=numpy.isnan(data)), | |
| 310 | x, y, numpy.ma.array(data, mask=numpy.isnan(data)), |
|
322 | x, y, numpy.ma.array(data, mask=numpy.isnan(data)), | |
| 311 | vmin=self.zmin, |
|
323 | vmin=self.zmin, | |
| 312 | vmax=self.zmax, |
|
324 | vmax=self.zmax, | |
| 313 | cmap=self.cmaps[n]) |
|
325 | cmap=self.cmaps[n]) | |
| 314 |
|
326 | |||
| 315 | if self.mode == 'A': |
|
327 | if self.mode == 'A': | |
| 316 | continue |
|
328 | continue | |
| 317 |
|
329 | |||
| 318 | # plot district names |
|
330 | # plot district names | |
| 319 | f = open('/data/workspace/schain_scripts/distrito.csv') |
|
331 | f = open('/data/workspace/schain_scripts/distrito.csv') | |
| 320 | for line in f: |
|
332 | for line in f: | |
| 321 | label, lon, lat = [s.strip() for s in line.split(',') if s] |
|
333 | label, lon, lat = [s.strip() for s in line.split(',') if s] | |
| 322 | lat = float(lat) |
|
334 | lat = float(lat) | |
| 323 | lon = float(lon) |
|
335 | lon = float(lon) | |
| 324 | # ax.plot(lon, lat, '.b', ms=2) |
|
336 | # ax.plot(lon, lat, '.b', ms=2) | |
| 325 | ax.text(lon, lat, label.decode('utf8'), ha='center', |
|
337 | ax.text(lon, lat, label.decode('utf8'), ha='center', | |
| 326 | va='bottom', size='8', color='black') |
|
338 | va='bottom', size='8', color='black') | |
| 327 |
|
339 | |||
| 328 | # plot limites |
|
340 | # plot limites | |
| 329 | limites = [] |
|
341 | limites = [] | |
| 330 | tmp = [] |
|
342 | tmp = [] | |
| 331 | for line in open('/data/workspace/schain_scripts/lima.csv'): |
|
343 | for line in open('/data/workspace/schain_scripts/lima.csv'): | |
| 332 | if '#' in line: |
|
344 | if '#' in line: | |
| 333 | if tmp: |
|
345 | if tmp: | |
| 334 | limites.append(tmp) |
|
346 | limites.append(tmp) | |
| 335 | tmp = [] |
|
347 | tmp = [] | |
| 336 | continue |
|
348 | continue | |
| 337 | values = line.strip().split(',') |
|
349 | values = line.strip().split(',') | |
| 338 | tmp.append((float(values[0]), float(values[1]))) |
|
350 | tmp.append((float(values[0]), float(values[1]))) | |
| 339 | for points in limites: |
|
351 | for points in limites: | |
| 340 | ax.add_patch( |
|
352 | ax.add_patch( | |
| 341 | Polygon(points, ec='k', fc='none', ls='--', lw=0.5)) |
|
353 | Polygon(points, ec='k', fc='none', ls='--', lw=0.5)) | |
| 342 |
|
354 | |||
| 343 | # plot Cuencas |
|
355 | # plot Cuencas | |
| 344 | for cuenca in ('rimac', 'lurin', 'mala', 'chillon', 'chilca', 'chancay-huaral'): |
|
356 | for cuenca in ('rimac', 'lurin', 'mala', 'chillon', 'chilca', 'chancay-huaral'): | |
| 345 | f = open('/data/workspace/schain_scripts/{}.csv'.format(cuenca)) |
|
357 | f = open('/data/workspace/schain_scripts/{}.csv'.format(cuenca)) | |
| 346 | values = [line.strip().split(',') for line in f] |
|
358 | values = [line.strip().split(',') for line in f] | |
| 347 | points = [(float(s[0]), float(s[1])) for s in values] |
|
359 | points = [(float(s[0]), float(s[1])) for s in values] | |
| 348 | ax.add_patch(Polygon(points, ec='b', fc='none')) |
|
360 | ax.add_patch(Polygon(points, ec='b', fc='none')) | |
| 349 |
|
361 | |||
| 350 | # plot grid |
|
362 | # plot grid | |
| 351 | for r in (15, 30, 45, 60): |
|
363 | for r in (15, 30, 45, 60): | |
| 352 | ax.add_artist(plt.Circle((self.lon, self.lat), |
|
364 | ax.add_artist(plt.Circle((self.lon, self.lat), | |
| 353 | km2deg(r), color='0.6', fill=False, lw=0.2)) |
|
365 | km2deg(r), color='0.6', fill=False, lw=0.2)) | |
| 354 | ax.text( |
|
366 | ax.text( | |
| 355 | self.lon + (km2deg(r))*numpy.cos(60*numpy.pi/180), |
|
367 | self.lon + (km2deg(r))*numpy.cos(60*numpy.pi/180), | |
| 356 | self.lat + (km2deg(r))*numpy.sin(60*numpy.pi/180), |
|
368 | self.lat + (km2deg(r))*numpy.sin(60*numpy.pi/180), | |
| 357 | '{}km'.format(r), |
|
369 | '{}km'.format(r), | |
| 358 | ha='center', va='bottom', size='8', color='0.6', weight='heavy') |
|
370 | ha='center', va='bottom', size='8', color='0.6', weight='heavy') | |
| 359 |
|
371 | |||
| 360 | if self.mode == 'E': |
|
372 | if self.mode == 'E': | |
| 361 | title = 'El={}$^\circ$'.format(self.data.meta['elevation']) |
|
373 | title = 'El={}$^\circ$'.format(self.data.meta['elevation']) | |
| 362 | label = 'E{:02d}'.format(int(self.data.meta['elevation'])) |
|
374 | label = 'E{:02d}'.format(int(self.data.meta['elevation'])) | |
| 363 | else: |
|
375 | else: | |
| 364 | title = 'Az={}$^\circ$'.format(self.data.meta['azimuth']) |
|
376 | title = 'Az={}$^\circ$'.format(self.data.meta['azimuth']) | |
| 365 | label = 'A{:02d}'.format(int(self.data.meta['azimuth'])) |
|
377 | label = 'A{:02d}'.format(int(self.data.meta['azimuth'])) | |
| 366 |
|
378 | |||
| 367 | self.save_labels = ['{}-{}'.format(lbl, label) for lbl in self.labels] |
|
379 | self.save_labels = ['{}-{}'.format(lbl, label) for lbl in self.labels] | |
| 368 | self.titles = ['{} {}'.format( |
|
380 | self.titles = ['{} {}'.format( | |
| 369 | self.data.parameters[x], title) for x in self.channels] |
|
381 | self.data.parameters[x], title) for x in self.channels] | |
| 370 |
|
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| @@ -1,743 +1,1254 | |||||
| 1 | # Copyright (c) 2012-2021 Jicamarca Radio Observatory |
|
1 | # Copyright (c) 2012-2021 Jicamarca Radio Observatory | |
| 2 | # All rights reserved. |
|
2 | # All rights reserved. | |
| 3 | # |
|
3 | # | |
| 4 | # Distributed under the terms of the BSD 3-clause license. |
|
4 | # Distributed under the terms of the BSD 3-clause license. | |
| 5 | """Classes to plot Spectra data |
|
5 | """Classes to plot Spectra data | |
| 6 |
|
6 | |||
| 7 | """ |
|
7 | """ | |
| 8 |
|
8 | |||
| 9 | import os |
|
9 | import os | |
| 10 | import numpy |
|
10 | import numpy | |
| 11 |
|
11 | |||
| 12 | from schainpy.model.graphics.jroplot_base import Plot, plt, log |
|
12 | from schainpy.model.graphics.jroplot_base import Plot, plt, log | |
| 13 |
|
13 | |||
| 14 |
|
14 | |||
| 15 | class SpectraPlot(Plot): |
|
15 | class SpectraPlot(Plot): | |
| 16 | ''' |
|
16 | ''' | |
| 17 | Plot for Spectra data |
|
17 | Plot for Spectra data | |
| 18 | ''' |
|
18 | ''' | |
| 19 |
|
19 | |||
| 20 | CODE = 'spc' |
|
20 | CODE = 'spc' | |
| 21 | colormap = 'jet' |
|
21 | colormap = 'jet' | |
| 22 | plot_type = 'pcolor' |
|
22 | plot_type = 'pcolor' | |
| 23 | buffering = False |
|
23 | buffering = False | |
| 24 |
|
24 | |||
| 25 | def setup(self): |
|
25 | def setup(self): | |
|
|
26 | ||||
| 26 | self.nplots = len(self.data.channels) |
|
27 | self.nplots = len(self.data.channels) | |
| 27 | self.ncols = int(numpy.sqrt(self.nplots) + 0.9) |
|
28 | self.ncols = int(numpy.sqrt(self.nplots) + 0.9) | |
| 28 | self.nrows = int((1.0 * self.nplots / self.ncols) + 0.9) |
|
29 | self.nrows = int((1.0 * self.nplots / self.ncols) + 0.9) | |
| 29 | self.height = 2.6 * self.nrows |
|
30 | self.height = 2.6 * self.nrows | |
| 30 | self.cb_label = 'dB' |
|
31 | self.cb_label = 'dB' | |
| 31 | if self.showprofile: |
|
32 | if self.showprofile: | |
| 32 | self.width = 4 * self.ncols |
|
33 | self.width = 4 * self.ncols | |
| 33 | else: |
|
34 | else: | |
| 34 | self.width = 3.5 * self.ncols |
|
35 | self.width = 3.5 * self.ncols | |
| 35 |
self.plots_adjust.update({'wspace': 0. |
|
36 | self.plots_adjust.update({'wspace': 0.8, 'hspace':0.2, 'left': 0.2, 'right': 0.9, 'bottom': 0.18}) | |
| 36 | self.ylabel = 'Range [km]' |
|
37 | self.ylabel = 'Range [km]' | |
| 37 |
|
38 | |||
| 38 | def update(self, dataOut): |
|
39 | def update(self, dataOut): | |
| 39 |
|
40 | |||
| 40 | data = {} |
|
41 | data = {} | |
| 41 | meta = {} |
|
42 | meta = {} | |
| 42 | spc = 10*numpy.log10(dataOut.data_spc/dataOut.normFactor) |
|
43 | spc = 10*numpy.log10(dataOut.data_spc/dataOut.normFactor) | |
| 43 | data['spc'] = spc |
|
44 | data['spc'] = spc | |
| 44 | data['rti'] = dataOut.getPower() |
|
45 | data['rti'] = dataOut.getPower() | |
| 45 | data['noise'] = 10*numpy.log10(dataOut.getNoise()/dataOut.normFactor) |
|
46 | data['noise'] = 10*numpy.log10(dataOut.getNoise()/dataOut.normFactor) | |
| 46 | meta['xrange'] = (dataOut.getFreqRange(1)/1000., dataOut.getAcfRange(1), dataOut.getVelRange(1)) |
|
47 | meta['xrange'] = (dataOut.getFreqRange(1)/1000., dataOut.getAcfRange(1), dataOut.getVelRange(1)) | |
| 47 |
|
48 | |||
| 48 | if self.CODE == 'spc_moments': |
|
49 | if self.CODE == 'spc_moments': | |
| 49 | data['moments'] = dataOut.moments |
|
50 | data['moments'] = dataOut.moments | |
| 50 | # data['spc'] = 10*numpy.log10(dataOut.data_pre[0]/dataOut.normFactor) |
|
51 | # data['spc'] = 10*numpy.log10(dataOut.data_pre[0]/dataOut.normFactor) | |
| 51 | if self.CODE == 'gaussian_fit': |
|
52 | if self.CODE == 'gaussian_fit': | |
| 52 | # data['moments'] = dataOut.moments |
|
53 | # data['moments'] = dataOut.moments | |
| 53 | data['gaussfit'] = dataOut.DGauFitParams |
|
54 | data['gaussfit'] = dataOut.DGauFitParams | |
| 54 | # data['spc'] = 10*numpy.log10(dataOut.data_pre[0]/dataOut.normFactor) |
|
55 | # data['spc'] = 10*numpy.log10(dataOut.data_pre[0]/dataOut.normFactor) | |
| 55 |
|
56 | |||
| 56 | return data, meta |
|
57 | return data, meta | |
| 57 |
|
58 | |||
| 58 | def plot(self): |
|
59 | def plot(self): | |
|
|
60 | ||||
|
|
61 | #print(self.xaxis) | |||
|
|
62 | #exit(1) | |||
| 59 | if self.xaxis == "frequency": |
|
63 | if self.xaxis == "frequency": | |
| 60 | x = self.data.xrange[0] |
|
64 | x = self.data.xrange[0] | |
| 61 | self.xlabel = "Frequency (kHz)" |
|
65 | self.xlabel = "Frequency (kHz)" | |
| 62 | elif self.xaxis == "time": |
|
66 | elif self.xaxis == "time": | |
| 63 | x = self.data.xrange[1] |
|
67 | x = self.data.xrange[1] | |
| 64 | self.xlabel = "Time (ms)" |
|
68 | self.xlabel = "Time (ms)" | |
| 65 | else: |
|
69 | else: | |
| 66 | x = self.data.xrange[2] |
|
70 | x = self.data.xrange[2] | |
| 67 | self.xlabel = "Velocity (m/s)" |
|
71 | self.xlabel = "Velocity (m/s)" | |
| 68 |
|
72 | |||
| 69 | if (self.CODE == 'spc_moments') | (self.CODE == 'gaussian_fit'): |
|
73 | if (self.CODE == 'spc_moments') | (self.CODE == 'gaussian_fit'): | |
| 70 | x = self.data.xrange[2] |
|
74 | x = self.data.xrange[2] | |
| 71 | self.xlabel = "Velocity (m/s)" |
|
75 | self.xlabel = "Velocity (m/s)" | |
| 72 |
|
76 | |||
| 73 | self.titles = [] |
|
77 | self.titles = [] | |
| 74 |
|
78 | |||
| 75 | y = self.data.yrange |
|
79 | y = self.data.yrange | |
| 76 | self.y = y |
|
80 | self.y = y | |
| 77 |
|
81 | |||
| 78 | data = self.data[-1] |
|
82 | data = self.data[-1] | |
| 79 | z = data['spc'] |
|
83 | z = data['spc'] | |
| 80 |
|
84 | |||
|
|
85 | self.CODE2 = 'spc_oblique' | |||
|
|
86 | ||||
|
|
87 | ||||
| 81 | for n, ax in enumerate(self.axes): |
|
88 | for n, ax in enumerate(self.axes): | |
| 82 | noise = data['noise'][n] |
|
89 | noise = data['noise'][n] | |
| 83 | if self.CODE == 'spc_moments': |
|
90 | if self.CODE == 'spc_moments': | |
| 84 | mean = data['moments'][n, 1] |
|
91 | mean = data['moments'][n, 1] | |
| 85 | if self.CODE == 'gaussian_fit': |
|
92 | if self.CODE == 'gaussian_fit': | |
| 86 | # mean = data['moments'][n, 1] |
|
93 | # mean = data['moments'][n, 1] | |
| 87 | gau0 = data['gaussfit'][n][2,:,0] |
|
94 | gau0 = data['gaussfit'][n][2,:,0] | |
| 88 | gau1 = data['gaussfit'][n][2,:,1] |
|
95 | gau1 = data['gaussfit'][n][2,:,1] | |
| 89 | if ax.firsttime: |
|
96 | if ax.firsttime: | |
| 90 | self.xmax = self.xmax if self.xmax else numpy.nanmax(x) |
|
97 | self.xmax = self.xmax if self.xmax else numpy.nanmax(x) | |
| 91 | self.xmin = self.xmin if self.xmin else -self.xmax |
|
98 | self.xmin = self.xmin if self.xmin else -self.xmax | |
| 92 | self.zmin = self.zmin if self.zmin else numpy.nanmin(z) |
|
99 | self.zmin = self.zmin if self.zmin else numpy.nanmin(z) | |
| 93 | self.zmax = self.zmax if self.zmax else numpy.nanmax(z) |
|
100 | self.zmax = self.zmax if self.zmax else numpy.nanmax(z) | |
|
|
101 | #print(numpy.shape(x)) | |||
| 94 | ax.plt = ax.pcolormesh(x, y, z[n].T, |
|
102 | ax.plt = ax.pcolormesh(x, y, z[n].T, | |
| 95 | vmin=self.zmin, |
|
103 | vmin=self.zmin, | |
| 96 | vmax=self.zmax, |
|
104 | vmax=self.zmax, | |
| 97 | cmap=plt.get_cmap(self.colormap) |
|
105 | cmap=plt.get_cmap(self.colormap) | |
| 98 | ) |
|
106 | ) | |
| 99 |
|
107 | |||
| 100 | if self.showprofile: |
|
108 | if self.showprofile: | |
| 101 | ax.plt_profile = self.pf_axes[n].plot( |
|
109 | ax.plt_profile = self.pf_axes[n].plot( | |
| 102 | data['rti'][n], y)[0] |
|
110 | data['rti'][n], y)[0] | |
| 103 | ax.plt_noise = self.pf_axes[n].plot(numpy.repeat(noise, len(y)), y, |
|
111 | ax.plt_noise = self.pf_axes[n].plot(numpy.repeat(noise, len(y)), y, | |
| 104 | color="k", linestyle="dashed", lw=1)[0] |
|
112 | color="k", linestyle="dashed", lw=1)[0] | |
| 105 | if self.CODE == 'spc_moments': |
|
113 | if self.CODE == 'spc_moments': | |
| 106 | ax.plt_mean = ax.plot(mean, y, color='k', lw=1)[0] |
|
114 | ax.plt_mean = ax.plot(mean, y, color='k', lw=1)[0] | |
| 107 | if self.CODE == 'gaussian_fit': |
|
115 | if self.CODE == 'gaussian_fit': | |
| 108 | # ax.plt_mean = ax.plot(mean, y, color='k', lw=1)[0] |
|
|||
| 109 | ax.plt_gau0 = ax.plot(gau0, y, color='r', lw=1)[0] |
|
116 | ax.plt_gau0 = ax.plot(gau0, y, color='r', lw=1)[0] | |
| 110 | ax.plt_gau1 = ax.plot(gau1, y, color='y', lw=1)[0] |
|
117 | ax.plt_gau1 = ax.plot(gau1, y, color='y', lw=1)[0] | |
| 111 | else: |
|
118 | else: | |
| 112 | ax.plt.set_array(z[n].T.ravel()) |
|
119 | ax.plt.set_array(z[n].T.ravel()) | |
| 113 | if self.showprofile: |
|
120 | if self.showprofile: | |
| 114 | ax.plt_profile.set_data(data['rti'][n], y) |
|
121 | ax.plt_profile.set_data(data['rti'][n], y) | |
| 115 | ax.plt_noise.set_data(numpy.repeat(noise, len(y)), y) |
|
122 | ax.plt_noise.set_data(numpy.repeat(noise, len(y)), y) | |
| 116 | if self.CODE == 'spc_moments': |
|
123 | if self.CODE == 'spc_moments': | |
| 117 | ax.plt_mean.set_data(mean, y) |
|
124 | ax.plt_mean.set_data(mean, y) | |
| 118 | if self.CODE == 'gaussian_fit': |
|
125 | if self.CODE == 'gaussian_fit': | |
| 119 | # ax.plt_mean.set_data(mean, y) |
|
|||
| 120 | ax.plt_gau0.set_data(gau0, y) |
|
126 | ax.plt_gau0.set_data(gau0, y) | |
| 121 | ax.plt_gau1.set_data(gau1, y) |
|
127 | ax.plt_gau1.set_data(gau1, y) | |
| 122 | self.titles.append('CH {}: {:3.2f}dB'.format(n, noise)) |
|
128 | self.titles.append('CH {}: {:3.2f}dB'.format(n, noise)) | |
| 123 |
|
129 | |||
|
|
130 | class SpectraObliquePlot(Plot): | |||
|
|
131 | ''' | |||
|
|
132 | Plot for Spectra data | |||
|
|
133 | ''' | |||
|
|
134 | ||||
|
|
135 | CODE = 'spc' | |||
|
|
136 | colormap = 'jet' | |||
|
|
137 | plot_type = 'pcolor' | |||
|
|
138 | ||||
|
|
139 | def setup(self): | |||
|
|
140 | self.xaxis = "oblique" | |||
|
|
141 | self.nplots = len(self.data.channels) | |||
|
|
142 | self.ncols = int(numpy.sqrt(self.nplots) + 0.9) | |||
|
|
143 | self.nrows = int((1.0 * self.nplots / self.ncols) + 0.9) | |||
|
|
144 | self.height = 2.6 * self.nrows | |||
|
|
145 | self.cb_label = 'dB' | |||
|
|
146 | if self.showprofile: | |||
|
|
147 | self.width = 4 * self.ncols | |||
|
|
148 | else: | |||
|
|
149 | self.width = 3.5 * self.ncols | |||
|
|
150 | self.plots_adjust.update({'wspace': 0.8, 'hspace':0.2, 'left': 0.2, 'right': 0.9, 'bottom': 0.18}) | |||
|
|
151 | self.ylabel = 'Range [km]' | |||
|
|
152 | ||||
|
|
153 | def plot(self): | |||
|
|
154 | ||||
|
|
155 | #print(self.xaxis) | |||
|
|
156 | #exit(1) | |||
|
|
157 | if self.xaxis == "frequency": | |||
|
|
158 | x = self.data.xrange[0] | |||
|
|
159 | self.xlabel = "Frequency (kHz)" | |||
|
|
160 | elif self.xaxis == "time": | |||
|
|
161 | x = self.data.xrange[1] | |||
|
|
162 | self.xlabel = "Time (ms)" | |||
|
|
163 | else: | |||
|
|
164 | x = self.data.xrange[2] | |||
|
|
165 | self.xlabel = "Velocity (m/s)" | |||
|
|
166 | ||||
|
|
167 | if self.CODE == 'spc_moments': | |||
|
|
168 | x = self.data.xrange[2] | |||
|
|
169 | self.xlabel = "Velocity (m/s)" | |||
|
|
170 | ||||
|
|
171 | self.titles = [] | |||
|
|
172 | #self.xlabel = "Velocidad (m/s)" | |||
|
|
173 | #self.ylabel = 'Rango (km)' | |||
|
|
174 | ||||
|
|
175 | ||||
|
|
176 | y = self.data.heights | |||
|
|
177 | self.y = y | |||
|
|
178 | z = self.data['spc'] | |||
|
|
179 | ||||
|
|
180 | self.CODE2 = 'spc_oblique' | |||
|
|
181 | ||||
|
|
182 | ||||
|
|
183 | for n, ax in enumerate(self.axes): | |||
|
|
184 | noise = self.data['noise'][n][-1] | |||
|
|
185 | if self.CODE == 'spc_moments': | |||
|
|
186 | mean = self.data['moments'][n, :, 1, :][-1] | |||
|
|
187 | if self.CODE2 == 'spc_oblique': | |||
|
|
188 | shift1 = self.data.shift1 | |||
|
|
189 | shift2 = self.data.shift2 | |||
|
|
190 | if ax.firsttime: | |||
|
|
191 | self.xmax = self.xmax if self.xmax else numpy.nanmax(x) | |||
|
|
192 | self.xmin = self.xmin if self.xmin else -self.xmax | |||
|
|
193 | self.zmin = self.zmin if self.zmin else numpy.nanmin(z) | |||
|
|
194 | self.zmax = self.zmax if self.zmax else numpy.nanmax(z) | |||
|
|
195 | #print(numpy.shape(x)) | |||
|
|
196 | ax.plt = ax.pcolormesh(x, y, z[n].T, | |||
|
|
197 | vmin=self.zmin, | |||
|
|
198 | vmax=self.zmax, | |||
|
|
199 | cmap=plt.get_cmap(self.colormap) | |||
|
|
200 | ) | |||
|
|
201 | ||||
|
|
202 | if self.showprofile: | |||
|
|
203 | ax.plt_profile = self.pf_axes[n].plot( | |||
|
|
204 | self.data['rti'][n][-1], y)[0] | |||
|
|
205 | ax.plt_noise = self.pf_axes[n].plot(numpy.repeat(noise, len(y)), y, | |||
|
|
206 | color="k", linestyle="dashed", lw=1)[0] | |||
|
|
207 | if self.CODE == 'spc_moments': | |||
|
|
208 | ax.plt_mean = ax.plot(mean, y, color='k')[0] | |||
|
|
209 | ||||
|
|
210 | if self.CODE2 == 'spc_oblique': | |||
|
|
211 | #ax.plt_shift1 = ax.plot(shift1, y, color='k', marker='x', linestyle='None', markersize=0.5)[0] | |||
|
|
212 | #ax.plt_shift2 = ax.plot(shift2, y, color='m', marker='x', linestyle='None', markersize=0.5)[0] | |||
|
|
213 | self.ploterr1 = ax.errorbar(shift1, y, xerr=self.data.shift1_error,fmt='k^',elinewidth=0.2,marker='x',linestyle='None',markersize=0.5,capsize=0.3,markeredgewidth=0.2) | |||
|
|
214 | self.ploterr2 = ax.errorbar(shift2, y, xerr=self.data.shift2_error,fmt='m^',elinewidth=0.2,marker='x',linestyle='None',markersize=0.5,capsize=0.3,markeredgewidth=0.2) | |||
|
|
215 | ||||
|
|
216 | else: | |||
|
|
217 | self.ploterr1.remove() | |||
|
|
218 | self.ploterr2.remove() | |||
|
|
219 | ax.plt.set_array(z[n].T.ravel()) | |||
|
|
220 | if self.showprofile: | |||
|
|
221 | ax.plt_profile.set_data(self.data['rti'][n][-1], y) | |||
|
|
222 | ax.plt_noise.set_data(numpy.repeat(noise, len(y)), y) | |||
|
|
223 | if self.CODE == 'spc_moments': | |||
|
|
224 | ax.plt_mean.set_data(mean, y) | |||
|
|
225 | if self.CODE2 == 'spc_oblique': | |||
|
|
226 | #ax.plt_shift1.set_data(shift1, y) | |||
|
|
227 | #ax.plt_shift2.set_data(shift2, y) | |||
|
|
228 | #ax.clf() | |||
|
|
229 | self.ploterr1 = ax.errorbar(shift1, y, xerr=self.data.shift1_error,fmt='k^',elinewidth=0.2,marker='x',linestyle='None',markersize=0.5,capsize=0.3,markeredgewidth=0.2) | |||
|
|
230 | self.ploterr2 = ax.errorbar(shift2, y, xerr=self.data.shift2_error,fmt='m^',elinewidth=0.2,marker='x',linestyle='None',markersize=0.5,capsize=0.3,markeredgewidth=0.2) | |||
|
|
231 | ||||
|
|
232 | self.titles.append('CH {}: {:3.2f}dB'.format(n, noise)) | |||
|
|
233 | #self.titles.append('{}'.format('Velocidad Doppler')) | |||
| 124 |
|
234 | |||
| 125 | class CrossSpectraPlot(Plot): |
|
235 | class CrossSpectraPlot(Plot): | |
| 126 |
|
236 | |||
| 127 | CODE = 'cspc' |
|
237 | CODE = 'cspc' | |
| 128 | colormap = 'jet' |
|
238 | colormap = 'jet' | |
| 129 | plot_type = 'pcolor' |
|
239 | plot_type = 'pcolor' | |
| 130 | zmin_coh = None |
|
240 | zmin_coh = None | |
| 131 | zmax_coh = None |
|
241 | zmax_coh = None | |
| 132 | zmin_phase = None |
|
242 | zmin_phase = None | |
| 133 | zmax_phase = None |
|
243 | zmax_phase = None | |
| 134 |
|
244 | |||
| 135 | def setup(self): |
|
245 | def setup(self): | |
| 136 |
|
246 | |||
| 137 | self.ncols = 4 |
|
247 | self.ncols = 4 | |
| 138 | self.nplots = len(self.data.pairs) * 2 |
|
248 | self.nplots = len(self.data.pairs) * 2 | |
| 139 | self.nrows = int((1.0 * self.nplots / self.ncols) + 0.9) |
|
249 | self.nrows = int((1.0 * self.nplots / self.ncols) + 0.9) | |
| 140 | self.width = 3.1 * self.ncols |
|
250 | self.width = 3.1 * self.ncols | |
| 141 |
self.height = |
|
251 | self.height = 5 * self.nrows | |
| 142 | self.ylabel = 'Range [km]' |
|
252 | self.ylabel = 'Range [km]' | |
| 143 | self.showprofile = False |
|
253 | self.showprofile = False | |
| 144 | self.plots_adjust.update({'left': 0.08, 'right': 0.92, 'wspace': 0.5, 'hspace':0.4, 'top':0.95, 'bottom': 0.08}) |
|
254 | self.plots_adjust.update({'left': 0.08, 'right': 0.92, 'wspace': 0.5, 'hspace':0.4, 'top':0.95, 'bottom': 0.08}) | |
| 145 |
|
255 | |||
| 146 | def update(self, dataOut): |
|
256 | def update(self, dataOut): | |
| 147 |
|
257 | |||
| 148 | data = {} |
|
258 | data = {} | |
| 149 | meta = {} |
|
259 | meta = {} | |
| 150 |
|
260 | |||
| 151 | spc = dataOut.data_spc |
|
261 | spc = dataOut.data_spc | |
| 152 | cspc = dataOut.data_cspc |
|
262 | cspc = dataOut.data_cspc | |
| 153 | meta['xrange'] = (dataOut.getFreqRange(1)/1000., dataOut.getAcfRange(1), dataOut.getVelRange(1)) |
|
263 | meta['xrange'] = (dataOut.getFreqRange(1)/1000., dataOut.getAcfRange(1), dataOut.getVelRange(1)) | |
| 154 | meta['pairs'] = dataOut.pairsList |
|
264 | meta['pairs'] = dataOut.pairsList | |
| 155 |
|
265 | |||
| 156 | tmp = [] |
|
266 | tmp = [] | |
| 157 |
|
267 | |||
| 158 | for n, pair in enumerate(meta['pairs']): |
|
268 | for n, pair in enumerate(meta['pairs']): | |
| 159 | out = cspc[n] / numpy.sqrt(spc[pair[0]] * spc[pair[1]]) |
|
269 | out = cspc[n] / numpy.sqrt(spc[pair[0]] * spc[pair[1]]) | |
| 160 | coh = numpy.abs(out) |
|
270 | coh = numpy.abs(out) | |
| 161 | phase = numpy.arctan2(out.imag, out.real) * 180 / numpy.pi |
|
271 | phase = numpy.arctan2(out.imag, out.real) * 180 / numpy.pi | |
| 162 | tmp.append(coh) |
|
272 | tmp.append(coh) | |
| 163 | tmp.append(phase) |
|
273 | tmp.append(phase) | |
| 164 |
|
274 | |||
| 165 | data['cspc'] = numpy.array(tmp) |
|
275 | data['cspc'] = numpy.array(tmp) | |
| 166 |
|
276 | |||
| 167 | return data, meta |
|
277 | return data, meta | |
| 168 |
|
278 | |||
| 169 | def plot(self): |
|
279 | def plot(self): | |
| 170 |
|
280 | |||
| 171 | if self.xaxis == "frequency": |
|
281 | if self.xaxis == "frequency": | |
| 172 | x = self.data.xrange[0] |
|
282 | x = self.data.xrange[0] | |
| 173 | self.xlabel = "Frequency (kHz)" |
|
283 | self.xlabel = "Frequency (kHz)" | |
| 174 | elif self.xaxis == "time": |
|
284 | elif self.xaxis == "time": | |
| 175 | x = self.data.xrange[1] |
|
285 | x = self.data.xrange[1] | |
| 176 | self.xlabel = "Time (ms)" |
|
286 | self.xlabel = "Time (ms)" | |
| 177 | else: |
|
287 | else: | |
| 178 | x = self.data.xrange[2] |
|
288 | x = self.data.xrange[2] | |
| 179 | self.xlabel = "Velocity (m/s)" |
|
289 | self.xlabel = "Velocity (m/s)" | |
| 180 |
|
290 | |||
| 181 | self.titles = [] |
|
291 | self.titles = [] | |
| 182 |
|
292 | |||
| 183 | y = self.data.yrange |
|
293 | y = self.data.yrange | |
| 184 | self.y = y |
|
294 | self.y = y | |
| 185 |
|
295 | |||
| 186 | data = self.data[-1] |
|
296 | data = self.data[-1] | |
| 187 | cspc = data['cspc'] |
|
297 | cspc = data['cspc'] | |
| 188 |
|
298 | |||
| 189 | for n in range(len(self.data.pairs)): |
|
299 | for n in range(len(self.data.pairs)): | |
| 190 | pair = self.data.pairs[n] |
|
300 | pair = self.data.pairs[n] | |
| 191 | coh = cspc[n*2] |
|
301 | coh = cspc[n*2] | |
| 192 | phase = cspc[n*2+1] |
|
302 | phase = cspc[n*2+1] | |
| 193 | ax = self.axes[2 * n] |
|
303 | ax = self.axes[2 * n] | |
| 194 | if ax.firsttime: |
|
304 | if ax.firsttime: | |
| 195 | ax.plt = ax.pcolormesh(x, y, coh.T, |
|
305 | ax.plt = ax.pcolormesh(x, y, coh.T, | |
| 196 | vmin=0, |
|
306 | vmin=0, | |
| 197 | vmax=1, |
|
307 | vmax=1, | |
| 198 | cmap=plt.get_cmap(self.colormap_coh) |
|
308 | cmap=plt.get_cmap(self.colormap_coh) | |
| 199 | ) |
|
309 | ) | |
| 200 | else: |
|
310 | else: | |
| 201 | ax.plt.set_array(coh.T.ravel()) |
|
311 | ax.plt.set_array(coh.T.ravel()) | |
| 202 | self.titles.append( |
|
312 | self.titles.append( | |
| 203 | 'Coherence Ch{} * Ch{}'.format(pair[0], pair[1])) |
|
313 | 'Coherence Ch{} * Ch{}'.format(pair[0], pair[1])) | |
| 204 |
|
314 | |||
| 205 | ax = self.axes[2 * n + 1] |
|
315 | ax = self.axes[2 * n + 1] | |
| 206 | if ax.firsttime: |
|
316 | if ax.firsttime: | |
| 207 | ax.plt = ax.pcolormesh(x, y, phase.T, |
|
317 | ax.plt = ax.pcolormesh(x, y, phase.T, | |
| 208 | vmin=-180, |
|
318 | vmin=-180, | |
| 209 | vmax=180, |
|
319 | vmax=180, | |
| 210 |
cmap=plt.get_cmap(self.colormap_phase) |
|
320 | cmap=plt.get_cmap(self.colormap_phase) | |
| 211 | ) |
|
321 | ) | |
| 212 | else: |
|
322 | else: | |
| 213 | ax.plt.set_array(phase.T.ravel()) |
|
323 | ax.plt.set_array(phase.T.ravel()) | |
| 214 | self.titles.append('Phase CH{} * CH{}'.format(pair[0], pair[1])) |
|
324 | self.titles.append('Phase CH{} * CH{}'.format(pair[0], pair[1])) | |
| 215 |
|
325 | |||
| 216 |
|
326 | |||
|
|
327 | class CrossSpectra4Plot(Plot): | |||
|
|
328 | ||||
|
|
329 | CODE = 'cspc' | |||
|
|
330 | colormap = 'jet' | |||
|
|
331 | plot_type = 'pcolor' | |||
|
|
332 | zmin_coh = None | |||
|
|
333 | zmax_coh = None | |||
|
|
334 | zmin_phase = None | |||
|
|
335 | zmax_phase = None | |||
|
|
336 | ||||
|
|
337 | def setup(self): | |||
|
|
338 | ||||
|
|
339 | self.ncols = 4 | |||
|
|
340 | self.nrows = len(self.data.pairs) | |||
|
|
341 | self.nplots = self.nrows * 4 | |||
|
|
342 | self.width = 3.1 * self.ncols | |||
|
|
343 | self.height = 5 * self.nrows | |||
|
|
344 | self.ylabel = 'Range [km]' | |||
|
|
345 | self.showprofile = False | |||
|
|
346 | self.plots_adjust.update({'left': 0.08, 'right': 0.92, 'wspace': 0.5, 'hspace':0.4, 'top':0.95, 'bottom': 0.08}) | |||
|
|
347 | ||||
|
|
348 | def plot(self): | |||
|
|
349 | ||||
|
|
350 | if self.xaxis == "frequency": | |||
|
|
351 | x = self.data.xrange[0] | |||
|
|
352 | self.xlabel = "Frequency (kHz)" | |||
|
|
353 | elif self.xaxis == "time": | |||
|
|
354 | x = self.data.xrange[1] | |||
|
|
355 | self.xlabel = "Time (ms)" | |||
|
|
356 | else: | |||
|
|
357 | x = self.data.xrange[2] | |||
|
|
358 | self.xlabel = "Velocity (m/s)" | |||
|
|
359 | ||||
|
|
360 | self.titles = [] | |||
|
|
361 | ||||
|
|
362 | ||||
|
|
363 | y = self.data.heights | |||
|
|
364 | self.y = y | |||
|
|
365 | nspc = self.data['spc'] | |||
|
|
366 | #print(numpy.shape(self.data['spc'])) | |||
|
|
367 | spc = self.data['cspc'][0] | |||
|
|
368 | #print(numpy.shape(nspc)) | |||
|
|
369 | #exit() | |||
|
|
370 | #nspc[1,:,:] = numpy.flip(nspc[1,:,:],axis=0) | |||
|
|
371 | #print(numpy.shape(spc)) | |||
|
|
372 | #exit() | |||
|
|
373 | cspc = self.data['cspc'][1] | |||
|
|
374 | ||||
|
|
375 | #xflip=numpy.flip(x) | |||
|
|
376 | #print(numpy.shape(cspc)) | |||
|
|
377 | #exit() | |||
|
|
378 | ||||
|
|
379 | for n in range(self.nrows): | |||
|
|
380 | noise = self.data['noise'][:,-1] | |||
|
|
381 | pair = self.data.pairs[n] | |||
|
|
382 | #print(pair) | |||
|
|
383 | #exit() | |||
|
|
384 | ax = self.axes[4 * n] | |||
|
|
385 | if ax.firsttime: | |||
|
|
386 | self.xmax = self.xmax if self.xmax else numpy.nanmax(x) | |||
|
|
387 | self.xmin = self.xmin if self.xmin else -self.xmax | |||
|
|
388 | self.zmin = self.zmin if self.zmin else numpy.nanmin(nspc) | |||
|
|
389 | self.zmax = self.zmax if self.zmax else numpy.nanmax(nspc) | |||
|
|
390 | ax.plt = ax.pcolormesh(x , y , nspc[pair[0]].T, | |||
|
|
391 | vmin=self.zmin, | |||
|
|
392 | vmax=self.zmax, | |||
|
|
393 | cmap=plt.get_cmap(self.colormap) | |||
|
|
394 | ) | |||
|
|
395 | else: | |||
|
|
396 | #print(numpy.shape(nspc[pair[0]].T)) | |||
|
|
397 | #exit() | |||
|
|
398 | ax.plt.set_array(nspc[pair[0]].T.ravel()) | |||
|
|
399 | self.titles.append('CH {}: {:3.2f}dB'.format(pair[0], noise[pair[0]])) | |||
|
|
400 | ||||
|
|
401 | ax = self.axes[4 * n + 1] | |||
|
|
402 | ||||
|
|
403 | if ax.firsttime: | |||
|
|
404 | ax.plt = ax.pcolormesh(x , y, numpy.flip(nspc[pair[1]],axis=0).T, | |||
|
|
405 | vmin=self.zmin, | |||
|
|
406 | vmax=self.zmax, | |||
|
|
407 | cmap=plt.get_cmap(self.colormap) | |||
|
|
408 | ) | |||
|
|
409 | else: | |||
|
|
410 | ||||
|
|
411 | ax.plt.set_array(numpy.flip(nspc[pair[1]],axis=0).T.ravel()) | |||
|
|
412 | self.titles.append('CH {}: {:3.2f}dB'.format(pair[1], noise[pair[1]])) | |||
|
|
413 | ||||
|
|
414 | out = cspc[n] / numpy.sqrt(spc[pair[0]] * spc[pair[1]]) | |||
|
|
415 | coh = numpy.abs(out) | |||
|
|
416 | phase = numpy.arctan2(out.imag, out.real) * 180 / numpy.pi | |||
|
|
417 | ||||
|
|
418 | ax = self.axes[4 * n + 2] | |||
|
|
419 | if ax.firsttime: | |||
|
|
420 | ax.plt = ax.pcolormesh(x, y, numpy.flip(coh,axis=0).T, | |||
|
|
421 | vmin=0, | |||
|
|
422 | vmax=1, | |||
|
|
423 | cmap=plt.get_cmap(self.colormap_coh) | |||
|
|
424 | ) | |||
|
|
425 | else: | |||
|
|
426 | ax.plt.set_array(numpy.flip(coh,axis=0).T.ravel()) | |||
|
|
427 | self.titles.append( | |||
|
|
428 | 'Coherence Ch{} * Ch{}'.format(pair[0], pair[1])) | |||
|
|
429 | ||||
|
|
430 | ax = self.axes[4 * n + 3] | |||
|
|
431 | if ax.firsttime: | |||
|
|
432 | ax.plt = ax.pcolormesh(x, y, numpy.flip(phase,axis=0).T, | |||
|
|
433 | vmin=-180, | |||
|
|
434 | vmax=180, | |||
|
|
435 | cmap=plt.get_cmap(self.colormap_phase) | |||
|
|
436 | ) | |||
|
|
437 | else: | |||
|
|
438 | ax.plt.set_array(numpy.flip(phase,axis=0).T.ravel()) | |||
|
|
439 | self.titles.append('Phase CH{} * CH{}'.format(pair[0], pair[1])) | |||
|
|
440 | ||||
|
|
441 | ||||
|
|
442 | class CrossSpectra2Plot(Plot): | |||
|
|
443 | ||||
|
|
444 | CODE = 'cspc' | |||
|
|
445 | colormap = 'jet' | |||
|
|
446 | plot_type = 'pcolor' | |||
|
|
447 | zmin_coh = None | |||
|
|
448 | zmax_coh = None | |||
|
|
449 | zmin_phase = None | |||
|
|
450 | zmax_phase = None | |||
|
|
451 | ||||
|
|
452 | def setup(self): | |||
|
|
453 | ||||
|
|
454 | self.ncols = 1 | |||
|
|
455 | self.nrows = len(self.data.pairs) | |||
|
|
456 | self.nplots = self.nrows * 1 | |||
|
|
457 | self.width = 3.1 * self.ncols | |||
|
|
458 | self.height = 5 * self.nrows | |||
|
|
459 | self.ylabel = 'Range [km]' | |||
|
|
460 | self.showprofile = False | |||
|
|
461 | self.plots_adjust.update({'left': 0.22, 'right': .90, 'wspace': 0.5, 'hspace':0.4, 'top':0.95, 'bottom': 0.08}) | |||
|
|
462 | ||||
|
|
463 | def plot(self): | |||
|
|
464 | ||||
|
|
465 | if self.xaxis == "frequency": | |||
|
|
466 | x = self.data.xrange[0] | |||
|
|
467 | self.xlabel = "Frequency (kHz)" | |||
|
|
468 | elif self.xaxis == "time": | |||
|
|
469 | x = self.data.xrange[1] | |||
|
|
470 | self.xlabel = "Time (ms)" | |||
|
|
471 | else: | |||
|
|
472 | x = self.data.xrange[2] | |||
|
|
473 | self.xlabel = "Velocity (m/s)" | |||
|
|
474 | ||||
|
|
475 | self.titles = [] | |||
|
|
476 | ||||
|
|
477 | ||||
|
|
478 | y = self.data.heights | |||
|
|
479 | self.y = y | |||
|
|
480 | #nspc = self.data['spc'] | |||
|
|
481 | #print(numpy.shape(self.data['spc'])) | |||
|
|
482 | #spc = self.data['cspc'][0] | |||
|
|
483 | #print(numpy.shape(spc)) | |||
|
|
484 | #exit() | |||
|
|
485 | cspc = self.data['cspc'][1] | |||
|
|
486 | #print(numpy.shape(cspc)) | |||
|
|
487 | #exit() | |||
|
|
488 | ||||
|
|
489 | for n in range(self.nrows): | |||
|
|
490 | noise = self.data['noise'][:,-1] | |||
|
|
491 | pair = self.data.pairs[n] | |||
|
|
492 | #print(pair) #exit() | |||
|
|
493 | ||||
|
|
494 | ||||
|
|
495 | ||||
|
|
496 | out = cspc[n]# / numpy.sqrt(spc[pair[0]] * spc[pair[1]]) | |||
|
|
497 | ||||
|
|
498 | #print(out[:,53]) | |||
|
|
499 | #exit() | |||
|
|
500 | cross = numpy.abs(out) | |||
|
|
501 | z = cross/self.data.nFactor | |||
|
|
502 | #print("here") | |||
|
|
503 | #print(dataOut.data_spc[0,0,0]) | |||
|
|
504 | #exit() | |||
|
|
505 | ||||
|
|
506 | cross = 10*numpy.log10(z) | |||
|
|
507 | #print(numpy.shape(cross)) | |||
|
|
508 | #print(cross[0,:]) | |||
|
|
509 | #print(self.data.nFactor) | |||
|
|
510 | #exit() | |||
|
|
511 | #phase = numpy.arctan2(out.imag, out.real) * 180 / numpy.pi | |||
|
|
512 | ||||
|
|
513 | ax = self.axes[1 * n] | |||
|
|
514 | if ax.firsttime: | |||
|
|
515 | self.xmax = self.xmax if self.xmax else numpy.nanmax(x) | |||
|
|
516 | self.xmin = self.xmin if self.xmin else -self.xmax | |||
|
|
517 | self.zmin = self.zmin if self.zmin else numpy.nanmin(cross) | |||
|
|
518 | self.zmax = self.zmax if self.zmax else numpy.nanmax(cross) | |||
|
|
519 | ax.plt = ax.pcolormesh(x, y, cross.T, | |||
|
|
520 | vmin=self.zmin, | |||
|
|
521 | vmax=self.zmax, | |||
|
|
522 | cmap=plt.get_cmap(self.colormap) | |||
|
|
523 | ) | |||
|
|
524 | else: | |||
|
|
525 | ax.plt.set_array(cross.T.ravel()) | |||
|
|
526 | self.titles.append( | |||
|
|
527 | 'Cross Spectra Power Ch{} * Ch{}'.format(pair[0], pair[1])) | |||
|
|
528 | ||||
|
|
529 | ||||
|
|
530 | class CrossSpectra3Plot(Plot): | |||
|
|
531 | ||||
|
|
532 | CODE = 'cspc' | |||
|
|
533 | colormap = 'jet' | |||
|
|
534 | plot_type = 'pcolor' | |||
|
|
535 | zmin_coh = None | |||
|
|
536 | zmax_coh = None | |||
|
|
537 | zmin_phase = None | |||
|
|
538 | zmax_phase = None | |||
|
|
539 | ||||
|
|
540 | def setup(self): | |||
|
|
541 | ||||
|
|
542 | self.ncols = 3 | |||
|
|
543 | self.nrows = len(self.data.pairs) | |||
|
|
544 | self.nplots = self.nrows * 3 | |||
|
|
545 | self.width = 3.1 * self.ncols | |||
|
|
546 | self.height = 5 * self.nrows | |||
|
|
547 | self.ylabel = 'Range [km]' | |||
|
|
548 | self.showprofile = False | |||
|
|
549 | self.plots_adjust.update({'left': 0.22, 'right': .90, 'wspace': 0.5, 'hspace':0.4, 'top':0.95, 'bottom': 0.08}) | |||
|
|
550 | ||||
|
|
551 | def plot(self): | |||
|
|
552 | ||||
|
|
553 | if self.xaxis == "frequency": | |||
|
|
554 | x = self.data.xrange[0] | |||
|
|
555 | self.xlabel = "Frequency (kHz)" | |||
|
|
556 | elif self.xaxis == "time": | |||
|
|
557 | x = self.data.xrange[1] | |||
|
|
558 | self.xlabel = "Time (ms)" | |||
|
|
559 | else: | |||
|
|
560 | x = self.data.xrange[2] | |||
|
|
561 | self.xlabel = "Velocity (m/s)" | |||
|
|
562 | ||||
|
|
563 | self.titles = [] | |||
|
|
564 | ||||
|
|
565 | ||||
|
|
566 | y = self.data.heights | |||
|
|
567 | self.y = y | |||
|
|
568 | #nspc = self.data['spc'] | |||
|
|
569 | #print(numpy.shape(self.data['spc'])) | |||
|
|
570 | #spc = self.data['cspc'][0] | |||
|
|
571 | #print(numpy.shape(spc)) | |||
|
|
572 | #exit() | |||
|
|
573 | cspc = self.data['cspc'][1] | |||
|
|
574 | #print(numpy.shape(cspc)) | |||
|
|
575 | #exit() | |||
|
|
576 | ||||
|
|
577 | for n in range(self.nrows): | |||
|
|
578 | noise = self.data['noise'][:,-1] | |||
|
|
579 | pair = self.data.pairs[n] | |||
|
|
580 | #print(pair) #exit() | |||
|
|
581 | ||||
|
|
582 | ||||
|
|
583 | ||||
|
|
584 | out = cspc[n]# / numpy.sqrt(spc[pair[0]] * spc[pair[1]]) | |||
|
|
585 | ||||
|
|
586 | #print(out[:,53]) | |||
|
|
587 | #exit() | |||
|
|
588 | cross = numpy.abs(out) | |||
|
|
589 | z = cross/self.data.nFactor | |||
|
|
590 | cross = 10*numpy.log10(z) | |||
|
|
591 | ||||
|
|
592 | out_r= out.real/self.data.nFactor | |||
|
|
593 | #out_r = 10*numpy.log10(out_r) | |||
|
|
594 | ||||
|
|
595 | out_i= out.imag/self.data.nFactor | |||
|
|
596 | #out_i = 10*numpy.log10(out_i) | |||
|
|
597 | #print(numpy.shape(cross)) | |||
|
|
598 | #print(cross[0,:]) | |||
|
|
599 | #print(self.data.nFactor) | |||
|
|
600 | #exit() | |||
|
|
601 | #phase = numpy.arctan2(out.imag, out.real) * 180 / numpy.pi | |||
|
|
602 | ||||
|
|
603 | ax = self.axes[3 * n] | |||
|
|
604 | if ax.firsttime: | |||
|
|
605 | self.xmax = self.xmax if self.xmax else numpy.nanmax(x) | |||
|
|
606 | self.xmin = self.xmin if self.xmin else -self.xmax | |||
|
|
607 | self.zmin = self.zmin if self.zmin else numpy.nanmin(cross) | |||
|
|
608 | self.zmax = self.zmax if self.zmax else numpy.nanmax(cross) | |||
|
|
609 | ax.plt = ax.pcolormesh(x, y, cross.T, | |||
|
|
610 | vmin=self.zmin, | |||
|
|
611 | vmax=self.zmax, | |||
|
|
612 | cmap=plt.get_cmap(self.colormap) | |||
|
|
613 | ) | |||
|
|
614 | else: | |||
|
|
615 | ax.plt.set_array(cross.T.ravel()) | |||
|
|
616 | self.titles.append( | |||
|
|
617 | 'Cross Spectra Power Ch{} * Ch{}'.format(pair[0], pair[1])) | |||
|
|
618 | ||||
|
|
619 | ax = self.axes[3 * n + 1] | |||
|
|
620 | if ax.firsttime: | |||
|
|
621 | self.xmax = self.xmax if self.xmax else numpy.nanmax(x) | |||
|
|
622 | self.xmin = self.xmin if self.xmin else -self.xmax | |||
|
|
623 | self.zmin = self.zmin if self.zmin else numpy.nanmin(cross) | |||
|
|
624 | self.zmax = self.zmax if self.zmax else numpy.nanmax(cross) | |||
|
|
625 | ax.plt = ax.pcolormesh(x, y, out_r.T, | |||
|
|
626 | vmin=-1.e6, | |||
|
|
627 | vmax=0, | |||
|
|
628 | cmap=plt.get_cmap(self.colormap) | |||
|
|
629 | ) | |||
|
|
630 | else: | |||
|
|
631 | ax.plt.set_array(out_r.T.ravel()) | |||
|
|
632 | self.titles.append( | |||
|
|
633 | 'Cross Spectra Real Ch{} * Ch{}'.format(pair[0], pair[1])) | |||
|
|
634 | ||||
|
|
635 | ax = self.axes[3 * n + 2] | |||
|
|
636 | ||||
|
|
637 | ||||
|
|
638 | if ax.firsttime: | |||
|
|
639 | self.xmax = self.xmax if self.xmax else numpy.nanmax(x) | |||
|
|
640 | self.xmin = self.xmin if self.xmin else -self.xmax | |||
|
|
641 | self.zmin = self.zmin if self.zmin else numpy.nanmin(cross) | |||
|
|
642 | self.zmax = self.zmax if self.zmax else numpy.nanmax(cross) | |||
|
|
643 | ax.plt = ax.pcolormesh(x, y, out_i.T, | |||
|
|
644 | vmin=-1.e6, | |||
|
|
645 | vmax=1.e6, | |||
|
|
646 | cmap=plt.get_cmap(self.colormap) | |||
|
|
647 | ) | |||
|
|
648 | else: | |||
|
|
649 | ax.plt.set_array(out_i.T.ravel()) | |||
|
|
650 | self.titles.append( | |||
|
|
651 | 'Cross Spectra Imag Ch{} * Ch{}'.format(pair[0], pair[1])) | |||
|
|
652 | ||||
| 217 | class RTIPlot(Plot): |
|
653 | class RTIPlot(Plot): | |
| 218 | ''' |
|
654 | ''' | |
| 219 | Plot for RTI data |
|
655 | Plot for RTI data | |
| 220 | ''' |
|
656 | ''' | |
| 221 |
|
657 | |||
| 222 | CODE = 'rti' |
|
658 | CODE = 'rti' | |
| 223 | colormap = 'jet' |
|
659 | colormap = 'jet' | |
| 224 | plot_type = 'pcolorbuffer' |
|
660 | plot_type = 'pcolorbuffer' | |
| 225 |
|
661 | |||
| 226 | def setup(self): |
|
662 | def setup(self): | |
| 227 | self.xaxis = 'time' |
|
663 | self.xaxis = 'time' | |
| 228 | self.ncols = 1 |
|
664 | self.ncols = 1 | |
| 229 | self.nrows = len(self.data.channels) |
|
665 | self.nrows = len(self.data.channels) | |
| 230 | self.nplots = len(self.data.channels) |
|
666 | self.nplots = len(self.data.channels) | |
| 231 | self.ylabel = 'Range [km]' |
|
667 | self.ylabel = 'Range [km]' | |
| 232 | self.xlabel = 'Time' |
|
668 | self.xlabel = 'Time' | |
| 233 | self.cb_label = 'dB' |
|
669 | self.cb_label = 'dB' | |
| 234 |
self.plots_adjust.update({'hspace':0.8, 'left': 0.1, 'bottom': 0. |
|
670 | self.plots_adjust.update({'hspace':0.8, 'left': 0.1, 'bottom': 0.1, 'right':0.95}) | |
| 235 | self.titles = ['{} Channel {}'.format( |
|
671 | self.titles = ['{} Channel {}'.format( | |
| 236 | self.CODE.upper(), x) for x in range(self.nrows)] |
|
672 | self.CODE.upper(), x) for x in range(self.nrows)] | |
| 237 |
|
673 | |||
| 238 | def update(self, dataOut): |
|
674 | def update(self, dataOut): | |
| 239 |
|
675 | |||
| 240 | data = {} |
|
676 | data = {} | |
| 241 | meta = {} |
|
677 | meta = {} | |
| 242 | data['rti'] = dataOut.getPower() |
|
678 | data['rti'] = dataOut.getPower() | |
| 243 | data['noise'] = 10*numpy.log10(dataOut.getNoise()/dataOut.normFactor) |
|
679 | data['noise'] = 10*numpy.log10(dataOut.getNoise()/dataOut.normFactor) | |
| 244 |
|
680 | |||
| 245 | return data, meta |
|
681 | return data, meta | |
| 246 |
|
682 | |||
| 247 | def plot(self): |
|
683 | def plot(self): | |
| 248 | self.x = self.data.times |
|
684 | self.x = self.data.times | |
| 249 | self.y = self.data.yrange |
|
685 | self.y = self.data.yrange | |
| 250 | self.z = self.data[self.CODE] |
|
686 | self.z = self.data[self.CODE] | |
|
|
687 | ||||
|
|
688 | self.z = numpy.ma.masked_invalid(self.z) | |||
|
|
689 | ||||
|
|
690 | if self.decimation is None: | |||
|
|
691 | x, y, z = self.fill_gaps(self.x, self.y, self.z) | |||
|
|
692 | else: | |||
|
|
693 | x, y, z = self.fill_gaps(*self.decimate()) | |||
|
|
694 | ||||
|
|
695 | for n, ax in enumerate(self.axes): | |||
|
|
696 | self.zmin = self.zmin if self.zmin else numpy.min(self.z) | |||
|
|
697 | self.zmax = self.zmax if self.zmax else numpy.max(self.z) | |||
|
|
698 | if ax.firsttime: | |||
|
|
699 | ax.plt = ax.pcolormesh(x, y, z[n].T, | |||
|
|
700 | vmin=self.zmin, | |||
|
|
701 | vmax=self.zmax, | |||
|
|
702 | cmap=plt.get_cmap(self.colormap) | |||
|
|
703 | ) | |||
|
|
704 | if self.showprofile: | |||
|
|
705 | ax.plot_profile = self.pf_axes[n].plot( | |||
|
|
706 | self.data['rti'][n][-1], self.y)[0] | |||
|
|
707 | ax.plot_noise = self.pf_axes[n].plot(numpy.repeat(self.data['noise'][n][-1], len(self.y)), self.y, | |||
|
|
708 | color="k", linestyle="dashed", lw=1)[0] | |||
|
|
709 | else: | |||
|
|
710 | ax.collections.remove(ax.collections[0]) | |||
|
|
711 | ax.plt = ax.pcolormesh(x, y, z[n].T, | |||
|
|
712 | vmin=self.zmin, | |||
|
|
713 | vmax=self.zmax, | |||
|
|
714 | cmap=plt.get_cmap(self.colormap) | |||
|
|
715 | ) | |||
|
|
716 | if self.showprofile: | |||
|
|
717 | ax.plot_profile.set_data(self.data['rti'][n][-1], self.y) | |||
|
|
718 | ax.plot_noise.set_data(numpy.repeat( | |||
|
|
719 | self.data['noise'][n][-1], len(self.y)), self.y) | |||
|
|
720 | ||||
|
|
721 | ||||
|
|
722 | class SpectrogramPlot(Plot): | |||
|
|
723 | ''' | |||
|
|
724 | Plot for Spectrogram data | |||
|
|
725 | ''' | |||
|
|
726 | ||||
|
|
727 | CODE = 'spectrogram' | |||
|
|
728 | colormap = 'binary' | |||
|
|
729 | plot_type = 'pcolorbuffer' | |||
|
|
730 | ||||
|
|
731 | def setup(self): | |||
|
|
732 | self.xaxis = 'time' | |||
|
|
733 | self.ncols = 1 | |||
|
|
734 | self.nrows = len(self.data.channels) | |||
|
|
735 | self.nplots = len(self.data.channels) | |||
|
|
736 | #print(self.dataOut.heightList) | |||
|
|
737 | #self.ylabel = 'Range [km]' | |||
|
|
738 | self.xlabel = 'Time' | |||
|
|
739 | self.cb_label = 'dB' | |||
|
|
740 | self.plots_adjust.update({'hspace':1.2, 'left': 0.1, 'bottom': 0.12, 'right':0.95}) | |||
|
|
741 | self.titles = ['{} Channel {} \n H = {} km ({} - {})'.format( | |||
|
|
742 | self.CODE.upper(), x, self.data.heightList[self.data.hei], self.data.heightList[self.data.hei],self.data.heightList[self.data.hei]+(self.data.DH*self.data.nProfiles)) for x in range(self.nrows)] | |||
|
|
743 | ||||
|
|
744 | def plot(self): | |||
|
|
745 | self.x = self.data.times | |||
|
|
746 | #self.y = self.data.heights | |||
|
|
747 | self.z = self.data[self.CODE] | |||
|
|
748 | self.y = self.data.xrange[0] | |||
|
|
749 | #import time | |||
|
|
750 | #print(time.ctime(self.x)) | |||
|
|
751 | ||||
|
|
752 | ''' | |||
|
|
753 | print(numpy.shape(self.x)) | |||
|
|
754 | print(numpy.shape(self.y)) | |||
|
|
755 | print(numpy.shape(self.z)) | |||
|
|
756 | ''' | |||
|
|
757 | self.ylabel = "Frequency (kHz)" | |||
|
|
758 | ||||
| 251 | self.z = numpy.ma.masked_invalid(self.z) |
|
759 | self.z = numpy.ma.masked_invalid(self.z) | |
| 252 |
|
760 | |||
| 253 | if self.decimation is None: |
|
761 | if self.decimation is None: | |
| 254 | x, y, z = self.fill_gaps(self.x, self.y, self.z) |
|
762 | x, y, z = self.fill_gaps(self.x, self.y, self.z) | |
| 255 | else: |
|
763 | else: | |
| 256 | x, y, z = self.fill_gaps(*self.decimate()) |
|
764 | x, y, z = self.fill_gaps(*self.decimate()) | |
| 257 |
|
765 | |||
| 258 | for n, ax in enumerate(self.axes): |
|
766 | for n, ax in enumerate(self.axes): | |
| 259 | self.zmin = self.zmin if self.zmin else numpy.min(self.z) |
|
767 | self.zmin = self.zmin if self.zmin else numpy.min(self.z) | |
| 260 | self.zmax = self.zmax if self.zmax else numpy.max(self.z) |
|
768 | self.zmax = self.zmax if self.zmax else numpy.max(self.z) | |
| 261 | data = self.data[-1] |
|
769 | data = self.data[-1] | |
| 262 | if ax.firsttime: |
|
770 | if ax.firsttime: | |
| 263 | ax.plt = ax.pcolormesh(x, y, z[n].T, |
|
771 | ax.plt = ax.pcolormesh(x, y, z[n].T, | |
| 264 | vmin=self.zmin, |
|
772 | vmin=self.zmin, | |
| 265 | vmax=self.zmax, |
|
773 | vmax=self.zmax, | |
| 266 | cmap=plt.get_cmap(self.colormap) |
|
774 | cmap=plt.get_cmap(self.colormap) | |
| 267 | ) |
|
775 | ) | |
| 268 | if self.showprofile: |
|
776 | if self.showprofile: | |
| 269 | ax.plot_profile = self.pf_axes[n].plot( |
|
777 | ax.plot_profile = self.pf_axes[n].plot( | |
| 270 | data['rti'][n], self.y)[0] |
|
778 | data['rti'][n], self.y)[0] | |
| 271 | ax.plot_noise = self.pf_axes[n].plot(numpy.repeat(data['noise'][n], len(self.y)), self.y, |
|
779 | ax.plot_noise = self.pf_axes[n].plot(numpy.repeat(data['noise'][n], len(self.y)), self.y, | |
| 272 | color="k", linestyle="dashed", lw=1)[0] |
|
780 | color="k", linestyle="dashed", lw=1)[0] | |
| 273 | else: |
|
781 | else: | |
| 274 | ax.collections.remove(ax.collections[0]) |
|
782 | ax.collections.remove(ax.collections[0]) | |
| 275 | ax.plt = ax.pcolormesh(x, y, z[n].T, |
|
783 | ax.plt = ax.pcolormesh(x, y, z[n].T, | |
| 276 | vmin=self.zmin, |
|
784 | vmin=self.zmin, | |
| 277 | vmax=self.zmax, |
|
785 | vmax=self.zmax, | |
| 278 | cmap=plt.get_cmap(self.colormap) |
|
786 | cmap=plt.get_cmap(self.colormap) | |
| 279 | ) |
|
787 | ) | |
| 280 | if self.showprofile: |
|
788 | if self.showprofile: | |
| 281 | ax.plot_profile.set_data(data['rti'][n], self.y) |
|
789 | ax.plot_profile.set_data(data['rti'][n], self.y) | |
| 282 | ax.plot_noise.set_data(numpy.repeat( |
|
790 | ax.plot_noise.set_data(numpy.repeat( | |
| 283 | data['noise'][n], len(self.y)), self.y) |
|
791 | data['noise'][n], len(self.y)), self.y) | |
| 284 |
|
792 | |||
| 285 |
|
793 | |||
| 286 | class CoherencePlot(RTIPlot): |
|
794 | class CoherencePlot(RTIPlot): | |
| 287 | ''' |
|
795 | ''' | |
| 288 | Plot for Coherence data |
|
796 | Plot for Coherence data | |
| 289 | ''' |
|
797 | ''' | |
| 290 |
|
798 | |||
| 291 | CODE = 'coh' |
|
799 | CODE = 'coh' | |
| 292 |
|
800 | |||
| 293 | def setup(self): |
|
801 | def setup(self): | |
| 294 | self.xaxis = 'time' |
|
802 | self.xaxis = 'time' | |
| 295 | self.ncols = 1 |
|
803 | self.ncols = 1 | |
| 296 | self.nrows = len(self.data.pairs) |
|
804 | self.nrows = len(self.data.pairs) | |
| 297 | self.nplots = len(self.data.pairs) |
|
805 | self.nplots = len(self.data.pairs) | |
| 298 | self.ylabel = 'Range [km]' |
|
806 | self.ylabel = 'Range [km]' | |
| 299 | self.xlabel = 'Time' |
|
807 | self.xlabel = 'Time' | |
| 300 | self.plots_adjust.update({'hspace':0.6, 'left': 0.1, 'bottom': 0.1,'right':0.95}) |
|
808 | self.plots_adjust.update({'hspace':0.6, 'left': 0.1, 'bottom': 0.1,'right':0.95}) | |
| 301 | if self.CODE == 'coh': |
|
809 | if self.CODE == 'coh': | |
| 302 | self.cb_label = '' |
|
810 | self.cb_label = '' | |
| 303 | self.titles = [ |
|
811 | self.titles = [ | |
| 304 | 'Coherence Map Ch{} * Ch{}'.format(x[0], x[1]) for x in self.data.pairs] |
|
812 | 'Coherence Map Ch{} * Ch{}'.format(x[0], x[1]) for x in self.data.pairs] | |
| 305 | else: |
|
813 | else: | |
| 306 | self.cb_label = 'Degrees' |
|
814 | self.cb_label = 'Degrees' | |
| 307 | self.titles = [ |
|
815 | self.titles = [ | |
| 308 | 'Phase Map Ch{} * Ch{}'.format(x[0], x[1]) for x in self.data.pairs] |
|
816 | 'Phase Map Ch{} * Ch{}'.format(x[0], x[1]) for x in self.data.pairs] | |
| 309 |
|
817 | |||
| 310 | def update(self, dataOut): |
|
818 | def update(self, dataOut): | |
| 311 |
|
819 | |||
| 312 | data = {} |
|
820 | data = {} | |
| 313 | meta = {} |
|
821 | meta = {} | |
| 314 | data['coh'] = dataOut.getCoherence() |
|
822 | data['coh'] = dataOut.getCoherence() | |
| 315 | meta['pairs'] = dataOut.pairsList |
|
823 | meta['pairs'] = dataOut.pairsList | |
| 316 |
|
824 | |||
| 317 | return data, meta |
|
825 | return data, meta | |
| 318 |
|
826 | |||
| 319 | class PhasePlot(CoherencePlot): |
|
827 | class PhasePlot(CoherencePlot): | |
| 320 | ''' |
|
828 | ''' | |
| 321 | Plot for Phase map data |
|
829 | Plot for Phase map data | |
| 322 | ''' |
|
830 | ''' | |
| 323 |
|
831 | |||
| 324 | CODE = 'phase' |
|
832 | CODE = 'phase' | |
| 325 | colormap = 'seismic' |
|
833 | colormap = 'seismic' | |
| 326 |
|
834 | |||
| 327 | def update(self, dataOut): |
|
835 | def update(self, dataOut): | |
| 328 |
|
836 | |||
| 329 | data = {} |
|
837 | data = {} | |
| 330 | meta = {} |
|
838 | meta = {} | |
| 331 | data['phase'] = dataOut.getCoherence(phase=True) |
|
839 | data['phase'] = dataOut.getCoherence(phase=True) | |
| 332 | meta['pairs'] = dataOut.pairsList |
|
840 | meta['pairs'] = dataOut.pairsList | |
| 333 |
|
841 | |||
| 334 | return data, meta |
|
842 | return data, meta | |
| 335 |
|
843 | |||
| 336 | class NoisePlot(Plot): |
|
844 | class NoisePlot(Plot): | |
| 337 | ''' |
|
845 | ''' | |
| 338 |
Plot for noise |
|
846 | Plot for noise | |
| 339 | ''' |
|
847 | ''' | |
| 340 |
|
848 | |||
| 341 | CODE = 'noise' |
|
849 | CODE = 'noise' | |
| 342 | plot_type = 'scatterbuffer' |
|
850 | plot_type = 'scatterbuffer' | |
| 343 |
|
851 | |||
| 344 | def setup(self): |
|
852 | def setup(self): | |
| 345 | self.xaxis = 'time' |
|
853 | self.xaxis = 'time' | |
| 346 | self.ncols = 1 |
|
854 | self.ncols = 1 | |
| 347 | self.nrows = 1 |
|
855 | self.nrows = 1 | |
| 348 | self.nplots = 1 |
|
856 | self.nplots = 1 | |
| 349 | self.ylabel = 'Intensity [dB]' |
|
857 | self.ylabel = 'Intensity [dB]' | |
| 350 | self.xlabel = 'Time' |
|
858 | self.xlabel = 'Time' | |
| 351 | self.titles = ['Noise'] |
|
859 | self.titles = ['Noise'] | |
| 352 | self.colorbar = False |
|
860 | self.colorbar = False | |
| 353 | self.plots_adjust.update({'right': 0.85 }) |
|
861 | self.plots_adjust.update({'right': 0.85 }) | |
| 354 |
|
862 | |||
| 355 | def update(self, dataOut): |
|
863 | def update(self, dataOut): | |
| 356 |
|
864 | |||
| 357 | data = {} |
|
865 | data = {} | |
| 358 | meta = {} |
|
866 | meta = {} | |
| 359 | data['noise'] = 10*numpy.log10(dataOut.getNoise()/dataOut.normFactor).reshape(dataOut.nChannels, 1) |
|
867 | data['noise'] = 10*numpy.log10(dataOut.getNoise()/dataOut.normFactor).reshape(dataOut.nChannels, 1) | |
| 360 | meta['yrange'] = numpy.array([]) |
|
868 | meta['yrange'] = numpy.array([]) | |
| 361 |
|
869 | |||
| 362 | return data, meta |
|
870 | return data, meta | |
| 363 |
|
871 | |||
| 364 | def plot(self): |
|
872 | def plot(self): | |
| 365 |
|
873 | |||
| 366 | x = self.data.times |
|
874 | x = self.data.times | |
| 367 | xmin = self.data.min_time |
|
875 | xmin = self.data.min_time | |
| 368 | xmax = xmin + self.xrange * 60 * 60 |
|
876 | xmax = xmin + self.xrange * 60 * 60 | |
| 369 | Y = self.data['noise'] |
|
877 | Y = self.data['noise'] | |
| 370 |
|
878 | |||
| 371 | if self.axes[0].firsttime: |
|
879 | if self.axes[0].firsttime: | |
| 372 | self.ymin = numpy.nanmin(Y) - 5 |
|
880 | self.ymin = numpy.nanmin(Y) - 5 | |
| 373 | self.ymax = numpy.nanmax(Y) + 5 |
|
881 | self.ymax = numpy.nanmax(Y) + 5 | |
| 374 | for ch in self.data.channels: |
|
882 | for ch in self.data.channels: | |
| 375 | y = Y[ch] |
|
883 | y = Y[ch] | |
| 376 | self.axes[0].plot(x, y, lw=1, label='Ch{}'.format(ch)) |
|
884 | self.axes[0].plot(x, y, lw=1, label='Ch{}'.format(ch)) | |
| 377 | plt.legend(bbox_to_anchor=(1.18, 1.0)) |
|
885 | plt.legend(bbox_to_anchor=(1.18, 1.0)) | |
| 378 | else: |
|
886 | else: | |
| 379 | for ch in self.data.channels: |
|
887 | for ch in self.data.channels: | |
| 380 | y = Y[ch] |
|
888 | y = Y[ch] | |
| 381 | self.axes[0].lines[ch].set_data(x, y) |
|
889 | self.axes[0].lines[ch].set_data(x, y) | |
| 382 |
|
890 | |||
| 383 |
|
891 | self.ymin = numpy.nanmin(Y) - 5 | ||
|
|
892 | self.ymax = numpy.nanmax(Y) + 10 | |||
|
|
893 | ||||
|
|
894 | ||||
| 384 | class PowerProfilePlot(Plot): |
|
895 | class PowerProfilePlot(Plot): | |
| 385 |
|
896 | |||
| 386 | CODE = 'pow_profile' |
|
897 | CODE = 'pow_profile' | |
| 387 | plot_type = 'scatter' |
|
898 | plot_type = 'scatter' | |
| 388 |
|
899 | |||
| 389 | def setup(self): |
|
900 | def setup(self): | |
| 390 |
|
901 | |||
| 391 | self.ncols = 1 |
|
902 | self.ncols = 1 | |
| 392 | self.nrows = 1 |
|
903 | self.nrows = 1 | |
| 393 | self.nplots = 1 |
|
904 | self.nplots = 1 | |
| 394 | self.height = 4 |
|
905 | self.height = 4 | |
| 395 | self.width = 3 |
|
906 | self.width = 3 | |
| 396 | self.ylabel = 'Range [km]' |
|
907 | self.ylabel = 'Range [km]' | |
| 397 | self.xlabel = 'Intensity [dB]' |
|
908 | self.xlabel = 'Intensity [dB]' | |
| 398 | self.titles = ['Power Profile'] |
|
909 | self.titles = ['Power Profile'] | |
| 399 | self.colorbar = False |
|
910 | self.colorbar = False | |
| 400 |
|
911 | |||
| 401 | def update(self, dataOut): |
|
912 | def update(self, dataOut): | |
| 402 |
|
913 | |||
| 403 | data = {} |
|
914 | data = {} | |
| 404 | meta = {} |
|
915 | meta = {} | |
| 405 | data[self.CODE] = dataOut.getPower() |
|
916 | data[self.CODE] = dataOut.getPower() | |
| 406 |
|
917 | |||
| 407 | return data, meta |
|
918 | return data, meta | |
| 408 |
|
919 | |||
| 409 | def plot(self): |
|
920 | def plot(self): | |
| 410 |
|
921 | |||
| 411 | y = self.data.yrange |
|
922 | y = self.data.yrange | |
| 412 | self.y = y |
|
923 | self.y = y | |
| 413 |
|
924 | |||
| 414 | x = self.data[-1][self.CODE] |
|
925 | x = self.data[-1][self.CODE] | |
| 415 |
|
926 | |||
| 416 | if self.xmin is None: self.xmin = numpy.nanmin(x)*0.9 |
|
927 | if self.xmin is None: self.xmin = numpy.nanmin(x)*0.9 | |
| 417 | if self.xmax is None: self.xmax = numpy.nanmax(x)*1.1 |
|
928 | if self.xmax is None: self.xmax = numpy.nanmax(x)*1.1 | |
| 418 |
|
929 | |||
| 419 | if self.axes[0].firsttime: |
|
930 | if self.axes[0].firsttime: | |
| 420 | for ch in self.data.channels: |
|
931 | for ch in self.data.channels: | |
| 421 | self.axes[0].plot(x[ch], y, lw=1, label='Ch{}'.format(ch)) |
|
932 | self.axes[0].plot(x[ch], y, lw=1, label='Ch{}'.format(ch)) | |
| 422 | plt.legend() |
|
933 | plt.legend() | |
| 423 | else: |
|
934 | else: | |
| 424 | for ch in self.data.channels: |
|
935 | for ch in self.data.channels: | |
| 425 | self.axes[0].lines[ch].set_data(x[ch], y) |
|
936 | self.axes[0].lines[ch].set_data(x[ch], y) | |
| 426 |
|
937 | |||
| 427 |
|
938 | |||
| 428 | class SpectraCutPlot(Plot): |
|
939 | class SpectraCutPlot(Plot): | |
| 429 |
|
940 | |||
| 430 | CODE = 'spc_cut' |
|
941 | CODE = 'spc_cut' | |
| 431 | plot_type = 'scatter' |
|
942 | plot_type = 'scatter' | |
| 432 | buffering = False |
|
943 | buffering = False | |
| 433 |
|
944 | |||
| 434 | def setup(self): |
|
945 | def setup(self): | |
| 435 |
|
946 | |||
| 436 | self.nplots = len(self.data.channels) |
|
947 | self.nplots = len(self.data.channels) | |
| 437 | self.ncols = int(numpy.sqrt(self.nplots) + 0.9) |
|
948 | self.ncols = int(numpy.sqrt(self.nplots) + 0.9) | |
| 438 | self.nrows = int((1.0 * self.nplots / self.ncols) + 0.9) |
|
949 | self.nrows = int((1.0 * self.nplots / self.ncols) + 0.9) | |
| 439 | self.width = 3.4 * self.ncols + 1.5 |
|
950 | self.width = 3.4 * self.ncols + 1.5 | |
| 440 | self.height = 3 * self.nrows |
|
951 | self.height = 3 * self.nrows | |
| 441 | self.ylabel = 'Power [dB]' |
|
952 | self.ylabel = 'Power [dB]' | |
| 442 | self.colorbar = False |
|
953 | self.colorbar = False | |
| 443 | self.plots_adjust.update({'left':0.1, 'hspace':0.3, 'right': 0.75, 'bottom':0.08}) |
|
954 | self.plots_adjust.update({'left':0.1, 'hspace':0.3, 'right': 0.75, 'bottom':0.08}) | |
| 444 |
|
955 | |||
| 445 | def update(self, dataOut): |
|
956 | def update(self, dataOut): | |
| 446 |
|
957 | |||
| 447 | data = {} |
|
958 | data = {} | |
| 448 | meta = {} |
|
959 | meta = {} | |
| 449 | spc = 10*numpy.log10(dataOut.data_pre[0]/dataOut.normFactor) |
|
960 | spc = 10*numpy.log10(dataOut.data_pre[0]/dataOut.normFactor) | |
| 450 | data['spc'] = spc |
|
961 | data['spc'] = spc | |
| 451 | meta['xrange'] = (dataOut.getFreqRange(1)/1000., dataOut.getAcfRange(1), dataOut.getVelRange(1)) |
|
962 | meta['xrange'] = (dataOut.getFreqRange(1)/1000., dataOut.getAcfRange(1), dataOut.getVelRange(1)) | |
| 452 | if self.CODE == 'cut_gaussian_fit': |
|
963 | if self.CODE == 'cut_gaussian_fit': | |
| 453 | data['gauss_fit0'] = 10*numpy.log10(dataOut.GaussFit0/dataOut.normFactor) |
|
964 | data['gauss_fit0'] = 10*numpy.log10(dataOut.GaussFit0/dataOut.normFactor) | |
| 454 | data['gauss_fit1'] = 10*numpy.log10(dataOut.GaussFit1/dataOut.normFactor) |
|
965 | data['gauss_fit1'] = 10*numpy.log10(dataOut.GaussFit1/dataOut.normFactor) | |
| 455 | return data, meta |
|
966 | return data, meta | |
| 456 |
|
967 | |||
| 457 | def plot(self): |
|
968 | def plot(self): | |
| 458 | if self.xaxis == "frequency": |
|
969 | if self.xaxis == "frequency": | |
| 459 | x = self.data.xrange[0][1:] |
|
970 | x = self.data.xrange[0][1:] | |
| 460 | self.xlabel = "Frequency (kHz)" |
|
971 | self.xlabel = "Frequency (kHz)" | |
| 461 | elif self.xaxis == "time": |
|
972 | elif self.xaxis == "time": | |
| 462 | x = self.data.xrange[1] |
|
973 | x = self.data.xrange[1] | |
| 463 | self.xlabel = "Time (ms)" |
|
974 | self.xlabel = "Time (ms)" | |
| 464 | else: |
|
975 | else: | |
| 465 | x = self.data.xrange[2][:-1] |
|
976 | x = self.data.xrange[2][:-1] | |
| 466 | self.xlabel = "Velocity (m/s)" |
|
977 | self.xlabel = "Velocity (m/s)" | |
| 467 |
|
978 | |||
| 468 | if self.CODE == 'cut_gaussian_fit': |
|
979 | if self.CODE == 'cut_gaussian_fit': | |
| 469 | x = self.data.xrange[2][:-1] |
|
980 | x = self.data.xrange[2][:-1] | |
| 470 | self.xlabel = "Velocity (m/s)" |
|
981 | self.xlabel = "Velocity (m/s)" | |
| 471 |
|
982 | |||
| 472 | self.titles = [] |
|
983 | self.titles = [] | |
| 473 |
|
984 | |||
| 474 | y = self.data.yrange |
|
985 | y = self.data.yrange | |
| 475 | data = self.data[-1] |
|
986 | data = self.data[-1] | |
| 476 | z = data['spc'] |
|
987 | z = data['spc'] | |
| 477 |
|
988 | |||
| 478 | if self.height_index: |
|
989 | if self.height_index: | |
| 479 | index = numpy.array(self.height_index) |
|
990 | index = numpy.array(self.height_index) | |
| 480 | else: |
|
991 | else: | |
| 481 | index = numpy.arange(0, len(y), int((len(y))/9)) |
|
992 | index = numpy.arange(0, len(y), int((len(y))/9)) | |
| 482 |
|
993 | |||
| 483 | for n, ax in enumerate(self.axes): |
|
994 | for n, ax in enumerate(self.axes): | |
| 484 | if self.CODE == 'cut_gaussian_fit': |
|
995 | if self.CODE == 'cut_gaussian_fit': | |
| 485 | gau0 = data['gauss_fit0'] |
|
996 | gau0 = data['gauss_fit0'] | |
| 486 | gau1 = data['gauss_fit1'] |
|
997 | gau1 = data['gauss_fit1'] | |
| 487 | if ax.firsttime: |
|
998 | if ax.firsttime: | |
| 488 | self.xmax = self.xmax if self.xmax else numpy.nanmax(x) |
|
999 | self.xmax = self.xmax if self.xmax else numpy.nanmax(x) | |
| 489 | self.xmin = self.xmin if self.xmin else -self.xmax |
|
1000 | self.xmin = self.xmin if self.xmin else -self.xmax | |
| 490 | self.ymin = self.ymin if self.ymin else numpy.nanmin(z) |
|
1001 | self.ymin = self.ymin if self.ymin else numpy.nanmin(z) | |
| 491 | self.ymax = self.ymax if self.ymax else numpy.nanmax(z) |
|
1002 | self.ymax = self.ymax if self.ymax else numpy.nanmax(z) | |
| 492 | ax.plt = ax.plot(x, z[n, :, index].T, lw=0.25) |
|
1003 | ax.plt = ax.plot(x, z[n, :, index].T, lw=0.25) | |
| 493 | if self.CODE == 'cut_gaussian_fit': |
|
1004 | if self.CODE == 'cut_gaussian_fit': | |
| 494 | ax.plt_gau0 = ax.plot(x, gau0[n, :, index].T, lw=1, linestyle='-.') |
|
1005 | ax.plt_gau0 = ax.plot(x, gau0[n, :, index].T, lw=1, linestyle='-.') | |
| 495 | for i, line in enumerate(ax.plt_gau0): |
|
1006 | for i, line in enumerate(ax.plt_gau0): | |
| 496 | line.set_color(ax.plt[i].get_color()) |
|
1007 | line.set_color(ax.plt[i].get_color()) | |
| 497 | ax.plt_gau1 = ax.plot(x, gau1[n, :, index].T, lw=1, linestyle='--') |
|
1008 | ax.plt_gau1 = ax.plot(x, gau1[n, :, index].T, lw=1, linestyle='--') | |
| 498 | for i, line in enumerate(ax.plt_gau1): |
|
1009 | for i, line in enumerate(ax.plt_gau1): | |
| 499 | line.set_color(ax.plt[i].get_color()) |
|
1010 | line.set_color(ax.plt[i].get_color()) | |
| 500 | labels = ['Range = {:2.1f}km'.format(y[i]) for i in index] |
|
1011 | labels = ['Range = {:2.1f}km'.format(y[i]) for i in index] | |
| 501 | self.figures[0].legend(ax.plt, labels, loc='center right') |
|
1012 | self.figures[0].legend(ax.plt, labels, loc='center right') | |
| 502 | else: |
|
1013 | else: | |
| 503 | for i, line in enumerate(ax.plt): |
|
1014 | for i, line in enumerate(ax.plt): | |
| 504 | line.set_data(x, z[n, :, index[i]].T) |
|
1015 | line.set_data(x, z[n, :, index[i]].T) | |
| 505 | for i, line in enumerate(ax.plt_gau0): |
|
1016 | for i, line in enumerate(ax.plt_gau0): | |
| 506 | line.set_data(x, gau0[n, :, index[i]].T) |
|
1017 | line.set_data(x, gau0[n, :, index[i]].T) | |
| 507 | line.set_color(ax.plt[i].get_color()) |
|
1018 | line.set_color(ax.plt[i].get_color()) | |
| 508 | for i, line in enumerate(ax.plt_gau1): |
|
1019 | for i, line in enumerate(ax.plt_gau1): | |
| 509 | line.set_data(x, gau1[n, :, index[i]].T) |
|
1020 | line.set_data(x, gau1[n, :, index[i]].T) | |
| 510 | line.set_color(ax.plt[i].get_color()) |
|
1021 | line.set_color(ax.plt[i].get_color()) | |
| 511 | self.titles.append('CH {}'.format(n)) |
|
1022 | self.titles.append('CH {}'.format(n)) | |
| 512 |
|
1023 | |||
| 513 |
|
1024 | |||
| 514 | class BeaconPhase(Plot): |
|
1025 | class BeaconPhase(Plot): | |
| 515 |
|
1026 | |||
| 516 | __isConfig = None |
|
1027 | __isConfig = None | |
| 517 | __nsubplots = None |
|
1028 | __nsubplots = None | |
| 518 |
|
1029 | |||
| 519 | PREFIX = 'beacon_phase' |
|
1030 | PREFIX = 'beacon_phase' | |
| 520 |
|
1031 | |||
| 521 | def __init__(self): |
|
1032 | def __init__(self): | |
| 522 | Plot.__init__(self) |
|
1033 | Plot.__init__(self) | |
| 523 | self.timerange = 24*60*60 |
|
1034 | self.timerange = 24*60*60 | |
| 524 | self.isConfig = False |
|
1035 | self.isConfig = False | |
| 525 | self.__nsubplots = 1 |
|
1036 | self.__nsubplots = 1 | |
| 526 | self.counter_imagwr = 0 |
|
1037 | self.counter_imagwr = 0 | |
| 527 | self.WIDTH = 800 |
|
1038 | self.WIDTH = 800 | |
| 528 | self.HEIGHT = 400 |
|
1039 | self.HEIGHT = 400 | |
| 529 | self.WIDTHPROF = 120 |
|
1040 | self.WIDTHPROF = 120 | |
| 530 | self.HEIGHTPROF = 0 |
|
1041 | self.HEIGHTPROF = 0 | |
| 531 | self.xdata = None |
|
1042 | self.xdata = None | |
| 532 | self.ydata = None |
|
1043 | self.ydata = None | |
| 533 |
|
1044 | |||
| 534 | self.PLOT_CODE = BEACON_CODE |
|
1045 | self.PLOT_CODE = BEACON_CODE | |
| 535 |
|
1046 | |||
| 536 | self.FTP_WEI = None |
|
1047 | self.FTP_WEI = None | |
| 537 | self.EXP_CODE = None |
|
1048 | self.EXP_CODE = None | |
| 538 | self.SUB_EXP_CODE = None |
|
1049 | self.SUB_EXP_CODE = None | |
| 539 | self.PLOT_POS = None |
|
1050 | self.PLOT_POS = None | |
| 540 |
|
1051 | |||
| 541 | self.filename_phase = None |
|
1052 | self.filename_phase = None | |
| 542 |
|
1053 | |||
| 543 | self.figfile = None |
|
1054 | self.figfile = None | |
| 544 |
|
1055 | |||
| 545 | self.xmin = None |
|
1056 | self.xmin = None | |
| 546 | self.xmax = None |
|
1057 | self.xmax = None | |
| 547 |
|
1058 | |||
| 548 | def getSubplots(self): |
|
1059 | def getSubplots(self): | |
| 549 |
|
1060 | |||
| 550 | ncol = 1 |
|
1061 | ncol = 1 | |
| 551 | nrow = 1 |
|
1062 | nrow = 1 | |
| 552 |
|
1063 | |||
| 553 | return nrow, ncol |
|
1064 | return nrow, ncol | |
| 554 |
|
1065 | |||
| 555 | def setup(self, id, nplots, wintitle, showprofile=True, show=True): |
|
1066 | def setup(self, id, nplots, wintitle, showprofile=True, show=True): | |
| 556 |
|
1067 | |||
| 557 | self.__showprofile = showprofile |
|
1068 | self.__showprofile = showprofile | |
| 558 | self.nplots = nplots |
|
1069 | self.nplots = nplots | |
| 559 |
|
1070 | |||
| 560 | ncolspan = 7 |
|
1071 | ncolspan = 7 | |
| 561 | colspan = 6 |
|
1072 | colspan = 6 | |
| 562 | self.__nsubplots = 2 |
|
1073 | self.__nsubplots = 2 | |
| 563 |
|
1074 | |||
| 564 | self.createFigure(id = id, |
|
1075 | self.createFigure(id = id, | |
| 565 | wintitle = wintitle, |
|
1076 | wintitle = wintitle, | |
| 566 | widthplot = self.WIDTH+self.WIDTHPROF, |
|
1077 | widthplot = self.WIDTH+self.WIDTHPROF, | |
| 567 | heightplot = self.HEIGHT+self.HEIGHTPROF, |
|
1078 | heightplot = self.HEIGHT+self.HEIGHTPROF, | |
| 568 | show=show) |
|
1079 | show=show) | |
| 569 |
|
1080 | |||
| 570 | nrow, ncol = self.getSubplots() |
|
1081 | nrow, ncol = self.getSubplots() | |
| 571 |
|
1082 | |||
| 572 | self.addAxes(nrow, ncol*ncolspan, 0, 0, colspan, 1) |
|
1083 | self.addAxes(nrow, ncol*ncolspan, 0, 0, colspan, 1) | |
| 573 |
|
1084 | |||
| 574 | def save_phase(self, filename_phase): |
|
1085 | def save_phase(self, filename_phase): | |
| 575 | f = open(filename_phase,'w+') |
|
1086 | f = open(filename_phase,'w+') | |
| 576 | f.write('\n\n') |
|
1087 | f.write('\n\n') | |
| 577 | f.write('JICAMARCA RADIO OBSERVATORY - Beacon Phase \n') |
|
1088 | f.write('JICAMARCA RADIO OBSERVATORY - Beacon Phase \n') | |
| 578 | f.write('DD MM YYYY HH MM SS pair(2,0) pair(2,1) pair(2,3) pair(2,4)\n\n' ) |
|
1089 | f.write('DD MM YYYY HH MM SS pair(2,0) pair(2,1) pair(2,3) pair(2,4)\n\n' ) | |
| 579 | f.close() |
|
1090 | f.close() | |
| 580 |
|
1091 | |||
| 581 | def save_data(self, filename_phase, data, data_datetime): |
|
1092 | def save_data(self, filename_phase, data, data_datetime): | |
| 582 | f=open(filename_phase,'a') |
|
1093 | f=open(filename_phase,'a') | |
| 583 | timetuple_data = data_datetime.timetuple() |
|
1094 | timetuple_data = data_datetime.timetuple() | |
| 584 | day = str(timetuple_data.tm_mday) |
|
1095 | day = str(timetuple_data.tm_mday) | |
| 585 | month = str(timetuple_data.tm_mon) |
|
1096 | month = str(timetuple_data.tm_mon) | |
| 586 | year = str(timetuple_data.tm_year) |
|
1097 | year = str(timetuple_data.tm_year) | |
| 587 | hour = str(timetuple_data.tm_hour) |
|
1098 | hour = str(timetuple_data.tm_hour) | |
| 588 | minute = str(timetuple_data.tm_min) |
|
1099 | minute = str(timetuple_data.tm_min) | |
| 589 | second = str(timetuple_data.tm_sec) |
|
1100 | second = str(timetuple_data.tm_sec) | |
| 590 | f.write(day+' '+month+' '+year+' '+hour+' '+minute+' '+second+' '+str(data[0])+' '+str(data[1])+' '+str(data[2])+' '+str(data[3])+'\n') |
|
1101 | f.write(day+' '+month+' '+year+' '+hour+' '+minute+' '+second+' '+str(data[0])+' '+str(data[1])+' '+str(data[2])+' '+str(data[3])+'\n') | |
| 591 | f.close() |
|
1102 | f.close() | |
| 592 |
|
1103 | |||
| 593 | def plot(self): |
|
1104 | def plot(self): | |
| 594 | log.warning('TODO: Not yet implemented...') |
|
1105 | log.warning('TODO: Not yet implemented...') | |
| 595 |
|
1106 | |||
| 596 | def run(self, dataOut, id, wintitle="", pairsList=None, showprofile='True', |
|
1107 | def run(self, dataOut, id, wintitle="", pairsList=None, showprofile='True', | |
| 597 | xmin=None, xmax=None, ymin=None, ymax=None, hmin=None, hmax=None, |
|
1108 | xmin=None, xmax=None, ymin=None, ymax=None, hmin=None, hmax=None, | |
| 598 | timerange=None, |
|
1109 | timerange=None, | |
| 599 | save=False, figpath='./', figfile=None, show=True, ftp=False, wr_period=1, |
|
1110 | save=False, figpath='./', figfile=None, show=True, ftp=False, wr_period=1, | |
| 600 | server=None, folder=None, username=None, password=None, |
|
1111 | server=None, folder=None, username=None, password=None, | |
| 601 | ftp_wei=0, exp_code=0, sub_exp_code=0, plot_pos=0): |
|
1112 | ftp_wei=0, exp_code=0, sub_exp_code=0, plot_pos=0): | |
| 602 |
|
1113 | |||
| 603 |
if dataOut.flagNoData: |
|
1114 | if dataOut.flagNoData: | |
| 604 | return dataOut |
|
1115 | return dataOut | |
| 605 |
|
1116 | |||
| 606 | if not isTimeInHourRange(dataOut.datatime, xmin, xmax): |
|
1117 | if not isTimeInHourRange(dataOut.datatime, xmin, xmax): | |
| 607 | return |
|
1118 | return | |
| 608 |
|
1119 | |||
| 609 | if pairsList == None: |
|
1120 | if pairsList == None: | |
| 610 | pairsIndexList = dataOut.pairsIndexList[:10] |
|
1121 | pairsIndexList = dataOut.pairsIndexList[:10] | |
| 611 | else: |
|
1122 | else: | |
| 612 | pairsIndexList = [] |
|
1123 | pairsIndexList = [] | |
| 613 | for pair in pairsList: |
|
1124 | for pair in pairsList: | |
| 614 | if pair not in dataOut.pairsList: |
|
1125 | if pair not in dataOut.pairsList: | |
| 615 | raise ValueError("Pair %s is not in dataOut.pairsList" %(pair)) |
|
1126 | raise ValueError("Pair %s is not in dataOut.pairsList" %(pair)) | |
| 616 | pairsIndexList.append(dataOut.pairsList.index(pair)) |
|
1127 | pairsIndexList.append(dataOut.pairsList.index(pair)) | |
| 617 |
|
1128 | |||
| 618 | if pairsIndexList == []: |
|
1129 | if pairsIndexList == []: | |
| 619 | return |
|
1130 | return | |
| 620 |
|
1131 | |||
| 621 | # if len(pairsIndexList) > 4: |
|
1132 | # if len(pairsIndexList) > 4: | |
| 622 | # pairsIndexList = pairsIndexList[0:4] |
|
1133 | # pairsIndexList = pairsIndexList[0:4] | |
| 623 |
|
1134 | |||
| 624 | hmin_index = None |
|
1135 | hmin_index = None | |
| 625 | hmax_index = None |
|
1136 | hmax_index = None | |
| 626 |
|
1137 | |||
| 627 | if hmin != None and hmax != None: |
|
1138 | if hmin != None and hmax != None: | |
| 628 | indexes = numpy.arange(dataOut.nHeights) |
|
1139 | indexes = numpy.arange(dataOut.nHeights) | |
| 629 | hmin_list = indexes[dataOut.heightList >= hmin] |
|
1140 | hmin_list = indexes[dataOut.heightList >= hmin] | |
| 630 | hmax_list = indexes[dataOut.heightList <= hmax] |
|
1141 | hmax_list = indexes[dataOut.heightList <= hmax] | |
| 631 |
|
1142 | |||
| 632 | if hmin_list.any(): |
|
1143 | if hmin_list.any(): | |
| 633 | hmin_index = hmin_list[0] |
|
1144 | hmin_index = hmin_list[0] | |
| 634 |
|
1145 | |||
| 635 | if hmax_list.any(): |
|
1146 | if hmax_list.any(): | |
| 636 | hmax_index = hmax_list[-1]+1 |
|
1147 | hmax_index = hmax_list[-1]+1 | |
| 637 |
|
1148 | |||
| 638 | x = dataOut.getTimeRange() |
|
1149 | x = dataOut.getTimeRange() | |
| 639 |
|
1150 | |||
| 640 | thisDatetime = dataOut.datatime |
|
1151 | thisDatetime = dataOut.datatime | |
| 641 |
|
1152 | |||
| 642 | title = wintitle + " Signal Phase" # : %s" %(thisDatetime.strftime("%d-%b-%Y")) |
|
1153 | title = wintitle + " Signal Phase" # : %s" %(thisDatetime.strftime("%d-%b-%Y")) | |
| 643 | xlabel = "Local Time" |
|
1154 | xlabel = "Local Time" | |
| 644 | ylabel = "Phase (degrees)" |
|
1155 | ylabel = "Phase (degrees)" | |
| 645 |
|
1156 | |||
| 646 | update_figfile = False |
|
1157 | update_figfile = False | |
| 647 |
|
1158 | |||
| 648 | nplots = len(pairsIndexList) |
|
1159 | nplots = len(pairsIndexList) | |
| 649 | #phase = numpy.zeros((len(pairsIndexList),len(dataOut.beacon_heiIndexList))) |
|
1160 | #phase = numpy.zeros((len(pairsIndexList),len(dataOut.beacon_heiIndexList))) | |
| 650 | phase_beacon = numpy.zeros(len(pairsIndexList)) |
|
1161 | phase_beacon = numpy.zeros(len(pairsIndexList)) | |
| 651 | for i in range(nplots): |
|
1162 | for i in range(nplots): | |
| 652 | pair = dataOut.pairsList[pairsIndexList[i]] |
|
1163 | pair = dataOut.pairsList[pairsIndexList[i]] | |
| 653 | ccf = numpy.average(dataOut.data_cspc[pairsIndexList[i], :, hmin_index:hmax_index], axis=0) |
|
1164 | ccf = numpy.average(dataOut.data_cspc[pairsIndexList[i], :, hmin_index:hmax_index], axis=0) | |
| 654 | powa = numpy.average(dataOut.data_spc[pair[0], :, hmin_index:hmax_index], axis=0) |
|
1165 | powa = numpy.average(dataOut.data_spc[pair[0], :, hmin_index:hmax_index], axis=0) | |
| 655 | powb = numpy.average(dataOut.data_spc[pair[1], :, hmin_index:hmax_index], axis=0) |
|
1166 | powb = numpy.average(dataOut.data_spc[pair[1], :, hmin_index:hmax_index], axis=0) | |
| 656 | avgcoherenceComplex = ccf/numpy.sqrt(powa*powb) |
|
1167 | avgcoherenceComplex = ccf/numpy.sqrt(powa*powb) | |
| 657 | phase = numpy.arctan2(avgcoherenceComplex.imag, avgcoherenceComplex.real)*180/numpy.pi |
|
1168 | phase = numpy.arctan2(avgcoherenceComplex.imag, avgcoherenceComplex.real)*180/numpy.pi | |
| 658 |
|
1169 | |||
| 659 | if dataOut.beacon_heiIndexList: |
|
1170 | if dataOut.beacon_heiIndexList: | |
| 660 | phase_beacon[i] = numpy.average(phase[dataOut.beacon_heiIndexList]) |
|
1171 | phase_beacon[i] = numpy.average(phase[dataOut.beacon_heiIndexList]) | |
| 661 | else: |
|
1172 | else: | |
| 662 | phase_beacon[i] = numpy.average(phase) |
|
1173 | phase_beacon[i] = numpy.average(phase) | |
| 663 |
|
1174 | |||
| 664 | if not self.isConfig: |
|
1175 | if not self.isConfig: | |
| 665 |
|
1176 | |||
| 666 | nplots = len(pairsIndexList) |
|
1177 | nplots = len(pairsIndexList) | |
| 667 |
|
1178 | |||
| 668 | self.setup(id=id, |
|
1179 | self.setup(id=id, | |
| 669 | nplots=nplots, |
|
1180 | nplots=nplots, | |
| 670 | wintitle=wintitle, |
|
1181 | wintitle=wintitle, | |
| 671 | showprofile=showprofile, |
|
1182 | showprofile=showprofile, | |
| 672 | show=show) |
|
1183 | show=show) | |
| 673 |
|
1184 | |||
| 674 | if timerange != None: |
|
1185 | if timerange != None: | |
| 675 | self.timerange = timerange |
|
1186 | self.timerange = timerange | |
| 676 |
|
1187 | |||
| 677 | self.xmin, self.xmax = self.getTimeLim(x, xmin, xmax, timerange) |
|
1188 | self.xmin, self.xmax = self.getTimeLim(x, xmin, xmax, timerange) | |
| 678 |
|
1189 | |||
| 679 | if ymin == None: ymin = 0 |
|
1190 | if ymin == None: ymin = 0 | |
| 680 | if ymax == None: ymax = 360 |
|
1191 | if ymax == None: ymax = 360 | |
| 681 |
|
1192 | |||
| 682 | self.FTP_WEI = ftp_wei |
|
1193 | self.FTP_WEI = ftp_wei | |
| 683 | self.EXP_CODE = exp_code |
|
1194 | self.EXP_CODE = exp_code | |
| 684 | self.SUB_EXP_CODE = sub_exp_code |
|
1195 | self.SUB_EXP_CODE = sub_exp_code | |
| 685 | self.PLOT_POS = plot_pos |
|
1196 | self.PLOT_POS = plot_pos | |
| 686 |
|
1197 | |||
| 687 | self.name = thisDatetime.strftime("%Y%m%d_%H%M%S") |
|
1198 | self.name = thisDatetime.strftime("%Y%m%d_%H%M%S") | |
| 688 | self.isConfig = True |
|
1199 | self.isConfig = True | |
| 689 | self.figfile = figfile |
|
1200 | self.figfile = figfile | |
| 690 | self.xdata = numpy.array([]) |
|
1201 | self.xdata = numpy.array([]) | |
| 691 | self.ydata = numpy.array([]) |
|
1202 | self.ydata = numpy.array([]) | |
| 692 |
|
1203 | |||
| 693 | update_figfile = True |
|
1204 | update_figfile = True | |
| 694 |
|
1205 | |||
| 695 | #open file beacon phase |
|
1206 | #open file beacon phase | |
| 696 | path = '%s%03d' %(self.PREFIX, self.id) |
|
1207 | path = '%s%03d' %(self.PREFIX, self.id) | |
| 697 | beacon_file = os.path.join(path,'%s.txt'%self.name) |
|
1208 | beacon_file = os.path.join(path,'%s.txt'%self.name) | |
| 698 | self.filename_phase = os.path.join(figpath,beacon_file) |
|
1209 | self.filename_phase = os.path.join(figpath,beacon_file) | |
| 699 | #self.save_phase(self.filename_phase) |
|
1210 | #self.save_phase(self.filename_phase) | |
| 700 |
|
1211 | |||
| 701 |
|
1212 | |||
| 702 | #store data beacon phase |
|
1213 | #store data beacon phase | |
| 703 | #self.save_data(self.filename_phase, phase_beacon, thisDatetime) |
|
1214 | #self.save_data(self.filename_phase, phase_beacon, thisDatetime) | |
| 704 |
|
1215 | |||
| 705 | self.setWinTitle(title) |
|
1216 | self.setWinTitle(title) | |
| 706 |
|
1217 | |||
| 707 |
|
1218 | |||
| 708 | title = "Phase Plot %s" %(thisDatetime.strftime("%Y/%m/%d %H:%M:%S")) |
|
1219 | title = "Phase Plot %s" %(thisDatetime.strftime("%Y/%m/%d %H:%M:%S")) | |
| 709 |
|
1220 | |||
| 710 | legendlabels = ["Pair (%d,%d)"%(pair[0], pair[1]) for pair in dataOut.pairsList] |
|
1221 | legendlabels = ["Pair (%d,%d)"%(pair[0], pair[1]) for pair in dataOut.pairsList] | |
| 711 |
|
1222 | |||
| 712 | axes = self.axesList[0] |
|
1223 | axes = self.axesList[0] | |
| 713 |
|
1224 | |||
| 714 | self.xdata = numpy.hstack((self.xdata, x[0:1])) |
|
1225 | self.xdata = numpy.hstack((self.xdata, x[0:1])) | |
| 715 |
|
1226 | |||
| 716 | if len(self.ydata)==0: |
|
1227 | if len(self.ydata)==0: | |
| 717 | self.ydata = phase_beacon.reshape(-1,1) |
|
1228 | self.ydata = phase_beacon.reshape(-1,1) | |
| 718 | else: |
|
1229 | else: | |
| 719 | self.ydata = numpy.hstack((self.ydata, phase_beacon.reshape(-1,1))) |
|
1230 | self.ydata = numpy.hstack((self.ydata, phase_beacon.reshape(-1,1))) | |
| 720 |
|
1231 | |||
| 721 |
|
1232 | |||
| 722 | axes.pmultilineyaxis(x=self.xdata, y=self.ydata, |
|
1233 | axes.pmultilineyaxis(x=self.xdata, y=self.ydata, | |
| 723 | xmin=self.xmin, xmax=self.xmax, ymin=ymin, ymax=ymax, |
|
1234 | xmin=self.xmin, xmax=self.xmax, ymin=ymin, ymax=ymax, | |
| 724 | xlabel=xlabel, ylabel=ylabel, title=title, legendlabels=legendlabels, marker='x', markersize=8, linestyle="solid", |
|
1235 | xlabel=xlabel, ylabel=ylabel, title=title, legendlabels=legendlabels, marker='x', markersize=8, linestyle="solid", | |
| 725 | XAxisAsTime=True, grid='both' |
|
1236 | XAxisAsTime=True, grid='both' | |
| 726 | ) |
|
1237 | ) | |
| 727 |
|
1238 | |||
| 728 | self.draw() |
|
1239 | self.draw() | |
| 729 |
|
1240 | |||
| 730 | if dataOut.ltctime >= self.xmax: |
|
1241 | if dataOut.ltctime >= self.xmax: | |
| 731 | self.counter_imagwr = wr_period |
|
1242 | self.counter_imagwr = wr_period | |
| 732 | self.isConfig = False |
|
1243 | self.isConfig = False | |
| 733 | update_figfile = True |
|
1244 | update_figfile = True | |
| 734 |
|
1245 | |||
| 735 | self.save(figpath=figpath, |
|
1246 | self.save(figpath=figpath, | |
| 736 | figfile=figfile, |
|
1247 | figfile=figfile, | |
| 737 | save=save, |
|
1248 | save=save, | |
| 738 | ftp=ftp, |
|
1249 | ftp=ftp, | |
| 739 | wr_period=wr_period, |
|
1250 | wr_period=wr_period, | |
| 740 | thisDatetime=thisDatetime, |
|
1251 | thisDatetime=thisDatetime, | |
| 741 | update_figfile=update_figfile) |
|
1252 | update_figfile=update_figfile) | |
| 742 |
|
1253 | |||
| 743 | return dataOut No newline at end of file |
|
1254 | return dataOut | |
| @@ -1,24 +1,29 | |||||
| 1 | ''' |
|
1 | ''' | |
| 2 |
|
2 | |||
| 3 | $Author: murco $ |
|
3 | $Author: murco $ | |
| 4 | $Id: JRODataIO.py 169 2012-11-19 21:57:03Z murco $ |
|
4 | $Id: JRODataIO.py 169 2012-11-19 21:57:03Z murco $ | |
| 5 | ''' |
|
5 | ''' | |
| 6 |
|
6 | |||
| 7 | from .jroIO_voltage import * |
|
7 | from .jroIO_voltage import * | |
| 8 | from .jroIO_spectra import * |
|
8 | from .jroIO_spectra import * | |
| 9 | from .jroIO_heispectra import * |
|
9 | from .jroIO_heispectra import * | |
| 10 | from .jroIO_usrp import * |
|
10 | from .jroIO_usrp import * | |
| 11 | from .jroIO_digitalRF import * |
|
11 | from .jroIO_digitalRF import * | |
| 12 | from .jroIO_kamisr import * |
|
12 | from .jroIO_kamisr import * | |
| 13 | from .jroIO_param import * |
|
13 | from .jroIO_param import * | |
| 14 | from .jroIO_hf import * |
|
14 | from .jroIO_hf import * | |
| 15 |
|
15 | |||
| 16 | from .jroIO_madrigal import * |
|
16 | from .jroIO_madrigal import * | |
| 17 |
|
17 | |||
| 18 | from .bltrIO_param import * |
|
18 | from .bltrIO_param import * | |
| 19 | from .bltrIO_spectra import * |
|
19 | from .bltrIO_spectra import * | |
| 20 | from .jroIO_mira35c import * |
|
20 | from .jroIO_mira35c import * | |
| 21 | from .julIO_param import * |
|
21 | from .julIO_param import * | |
| 22 |
|
22 | |||
| 23 | from .pxIO_param import * |
|
23 | from .pxIO_param import * | |
| 24 | from .jroIO_simulator import * No newline at end of file |
|
24 | from .jroIO_simulator import * | |
|
|
25 | ||||
|
|
26 | ############DP############ | |||
|
|
27 | from .jroIO_dat import * | |||
|
|
28 | ||||
|
|
29 | ############DP############ | |||
| @@ -1,1575 +1,1615 | |||||
| 1 | """ |
|
1 | """ | |
| 2 | Created on Jul 2, 2014 |
|
2 | Created on Jul 2, 2014 | |
| 3 |
|
3 | |||
| 4 | @author: roj-idl71 |
|
4 | @author: roj-idl71 | |
| 5 | """ |
|
5 | """ | |
| 6 | import os |
|
6 | import os | |
| 7 | import sys |
|
7 | import sys | |
| 8 | import glob |
|
8 | import glob | |
| 9 | import time |
|
9 | import time | |
| 10 | import numpy |
|
10 | import numpy | |
| 11 | import fnmatch |
|
11 | import fnmatch | |
| 12 | import inspect |
|
12 | import inspect | |
| 13 | import time |
|
13 | import time | |
| 14 | import datetime |
|
14 | import datetime | |
| 15 | import zmq |
|
15 | import zmq | |
| 16 |
|
16 | |||
| 17 | from schainpy.model.proc.jroproc_base import Operation, MPDecorator |
|
17 | from schainpy.model.proc.jroproc_base import Operation, MPDecorator | |
| 18 | from schainpy.model.data.jroheaderIO import PROCFLAG, BasicHeader, SystemHeader, RadarControllerHeader, ProcessingHeader |
|
18 | from schainpy.model.data.jroheaderIO import PROCFLAG, BasicHeader, SystemHeader, RadarControllerHeader, ProcessingHeader | |
| 19 | from schainpy.model.data.jroheaderIO import get_dtype_index, get_numpy_dtype, get_procflag_dtype, get_dtype_width |
|
19 | from schainpy.model.data.jroheaderIO import get_dtype_index, get_numpy_dtype, get_procflag_dtype, get_dtype_width | |
| 20 | from schainpy.utils import log |
|
20 | from schainpy.utils import log | |
| 21 | import schainpy.admin |
|
21 | import schainpy.admin | |
| 22 |
|
22 | |||
| 23 | LOCALTIME = True |
|
23 | LOCALTIME = True | |
| 24 | DT_DIRECTIVES = { |
|
24 | DT_DIRECTIVES = { | |
| 25 | '%Y': 4, |
|
25 | '%Y': 4, | |
| 26 | '%y': 2, |
|
26 | '%y': 2, | |
| 27 | '%m': 2, |
|
27 | '%m': 2, | |
| 28 | '%d': 2, |
|
28 | '%d': 2, | |
| 29 | '%j': 3, |
|
29 | '%j': 3, | |
| 30 | '%H': 2, |
|
30 | '%H': 2, | |
| 31 | '%M': 2, |
|
31 | '%M': 2, | |
| 32 | '%S': 2, |
|
32 | '%S': 2, | |
| 33 | '%f': 6 |
|
33 | '%f': 6 | |
| 34 | } |
|
34 | } | |
| 35 |
|
35 | |||
| 36 |
|
36 | |||
| 37 | def isNumber(cad): |
|
37 | def isNumber(cad): | |
| 38 | """ |
|
38 | """ | |
| 39 | Chequea si el conjunto de caracteres que componen un string puede ser convertidos a un numero. |
|
39 | Chequea si el conjunto de caracteres que componen un string puede ser convertidos a un numero. | |
| 40 |
|
40 | |||
| 41 | Excepciones: |
|
41 | Excepciones: | |
| 42 | Si un determinado string no puede ser convertido a numero |
|
42 | Si un determinado string no puede ser convertido a numero | |
| 43 | Input: |
|
43 | Input: | |
| 44 | str, string al cual se le analiza para determinar si convertible a un numero o no |
|
44 | str, string al cual se le analiza para determinar si convertible a un numero o no | |
| 45 |
|
45 | |||
| 46 | Return: |
|
46 | Return: | |
| 47 | True : si el string es uno numerico |
|
47 | True : si el string es uno numerico | |
| 48 | False : no es un string numerico |
|
48 | False : no es un string numerico | |
| 49 | """ |
|
49 | """ | |
| 50 | try: |
|
50 | try: | |
| 51 | float(cad) |
|
51 | float(cad) | |
| 52 | return True |
|
52 | return True | |
| 53 | except: |
|
53 | except: | |
| 54 | return False |
|
54 | return False | |
| 55 |
|
55 | |||
| 56 |
|
56 | |||
| 57 | def isFileInEpoch(filename, startUTSeconds, endUTSeconds): |
|
57 | def isFileInEpoch(filename, startUTSeconds, endUTSeconds): | |
| 58 | """ |
|
58 | """ | |
| 59 | Esta funcion determina si un archivo de datos se encuentra o no dentro del rango de fecha especificado. |
|
59 | Esta funcion determina si un archivo de datos se encuentra o no dentro del rango de fecha especificado. | |
| 60 |
|
60 | |||
| 61 | Inputs: |
|
61 | Inputs: | |
| 62 | filename : nombre completo del archivo de datos en formato Jicamarca (.r) |
|
62 | filename : nombre completo del archivo de datos en formato Jicamarca (.r) | |
| 63 |
|
63 | |||
| 64 | startUTSeconds : fecha inicial del rango seleccionado. La fecha esta dada en |
|
64 | startUTSeconds : fecha inicial del rango seleccionado. La fecha esta dada en | |
| 65 | segundos contados desde 01/01/1970. |
|
65 | segundos contados desde 01/01/1970. | |
| 66 | endUTSeconds : fecha final del rango seleccionado. La fecha esta dada en |
|
66 | endUTSeconds : fecha final del rango seleccionado. La fecha esta dada en | |
| 67 | segundos contados desde 01/01/1970. |
|
67 | segundos contados desde 01/01/1970. | |
| 68 |
|
68 | |||
| 69 | Return: |
|
69 | Return: | |
| 70 | Boolean : Retorna True si el archivo de datos contiene datos en el rango de |
|
70 | Boolean : Retorna True si el archivo de datos contiene datos en el rango de | |
| 71 | fecha especificado, de lo contrario retorna False. |
|
71 | fecha especificado, de lo contrario retorna False. | |
| 72 |
|
72 | |||
| 73 | Excepciones: |
|
73 | Excepciones: | |
| 74 | Si el archivo no existe o no puede ser abierto |
|
74 | Si el archivo no existe o no puede ser abierto | |
| 75 | Si la cabecera no puede ser leida. |
|
75 | Si la cabecera no puede ser leida. | |
| 76 |
|
76 | |||
| 77 | """ |
|
77 | """ | |
| 78 | basicHeaderObj = BasicHeader(LOCALTIME) |
|
78 | basicHeaderObj = BasicHeader(LOCALTIME) | |
| 79 |
|
79 | |||
| 80 | try: |
|
80 | try: | |
|
|
81 | ||||
| 81 | fp = open(filename, 'rb') |
|
82 | fp = open(filename, 'rb') | |
| 82 | except IOError: |
|
83 | except IOError: | |
| 83 | print("The file %s can't be opened" % (filename)) |
|
84 | print("The file %s can't be opened" % (filename)) | |
| 84 | return 0 |
|
85 | return 0 | |
| 85 |
|
86 | |||
| 86 | sts = basicHeaderObj.read(fp) |
|
87 | sts = basicHeaderObj.read(fp) | |
| 87 | fp.close() |
|
88 | fp.close() | |
| 88 |
|
89 | |||
| 89 | if not(sts): |
|
90 | if not(sts): | |
| 90 | print("Skipping the file %s because it has not a valid header" % (filename)) |
|
91 | print("Skipping the file %s because it has not a valid header" % (filename)) | |
| 91 | return 0 |
|
92 | return 0 | |
| 92 |
|
93 | |||
| 93 | if not ((startUTSeconds <= basicHeaderObj.utc) and (endUTSeconds > basicHeaderObj.utc)): |
|
94 | if not ((startUTSeconds <= basicHeaderObj.utc) and (endUTSeconds > basicHeaderObj.utc)): | |
| 94 | return 0 |
|
95 | return 0 | |
| 95 |
|
96 | |||
| 96 | return 1 |
|
97 | return 1 | |
| 97 |
|
98 | |||
| 98 |
|
99 | |||
| 99 | def isTimeInRange(thisTime, startTime, endTime): |
|
100 | def isTimeInRange(thisTime, startTime, endTime): | |
| 100 | if endTime >= startTime: |
|
101 | if endTime >= startTime: | |
| 101 | if (thisTime < startTime) or (thisTime > endTime): |
|
102 | if (thisTime < startTime) or (thisTime > endTime): | |
| 102 | return 0 |
|
103 | return 0 | |
| 103 | return 1 |
|
104 | return 1 | |
| 104 | else: |
|
105 | else: | |
| 105 | if (thisTime < startTime) and (thisTime > endTime): |
|
106 | if (thisTime < startTime) and (thisTime > endTime): | |
| 106 | return 0 |
|
107 | return 0 | |
| 107 | return 1 |
|
108 | return 1 | |
| 108 |
|
109 | |||
| 109 |
|
110 | |||
| 110 | def isFileInTimeRange(filename, startDate, endDate, startTime, endTime): |
|
111 | def isFileInTimeRange(filename, startDate, endDate, startTime, endTime): | |
| 111 | """ |
|
112 | """ | |
| 112 | Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado. |
|
113 | Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado. | |
| 113 |
|
114 | |||
| 114 | Inputs: |
|
115 | Inputs: | |
| 115 | filename : nombre completo del archivo de datos en formato Jicamarca (.r) |
|
116 | filename : nombre completo del archivo de datos en formato Jicamarca (.r) | |
| 116 |
|
117 | |||
| 117 | startDate : fecha inicial del rango seleccionado en formato datetime.date |
|
118 | startDate : fecha inicial del rango seleccionado en formato datetime.date | |
| 118 |
|
119 | |||
| 119 | endDate : fecha final del rango seleccionado en formato datetime.date |
|
120 | endDate : fecha final del rango seleccionado en formato datetime.date | |
| 120 |
|
121 | |||
| 121 | startTime : tiempo inicial del rango seleccionado en formato datetime.time |
|
122 | startTime : tiempo inicial del rango seleccionado en formato datetime.time | |
| 122 |
|
123 | |||
| 123 | endTime : tiempo final del rango seleccionado en formato datetime.time |
|
124 | endTime : tiempo final del rango seleccionado en formato datetime.time | |
| 124 |
|
125 | |||
| 125 | Return: |
|
126 | Return: | |
| 126 | Boolean : Retorna True si el archivo de datos contiene datos en el rango de |
|
127 | Boolean : Retorna True si el archivo de datos contiene datos en el rango de | |
| 127 | fecha especificado, de lo contrario retorna False. |
|
128 | fecha especificado, de lo contrario retorna False. | |
| 128 |
|
129 | |||
| 129 | Excepciones: |
|
130 | Excepciones: | |
| 130 | Si el archivo no existe o no puede ser abierto |
|
131 | Si el archivo no existe o no puede ser abierto | |
| 131 | Si la cabecera no puede ser leida. |
|
132 | Si la cabecera no puede ser leida. | |
| 132 |
|
133 | |||
| 133 | """ |
|
134 | """ | |
| 134 |
|
135 | |||
| 135 | try: |
|
136 | try: | |
| 136 | fp = open(filename, 'rb') |
|
137 | fp = open(filename, 'rb') | |
| 137 | except IOError: |
|
138 | except IOError: | |
| 138 | print("The file %s can't be opened" % (filename)) |
|
139 | print("The file %s can't be opened" % (filename)) | |
| 139 | return None |
|
140 | return None | |
| 140 |
|
141 | |||
| 141 | firstBasicHeaderObj = BasicHeader(LOCALTIME) |
|
142 | firstBasicHeaderObj = BasicHeader(LOCALTIME) | |
| 142 | systemHeaderObj = SystemHeader() |
|
143 | systemHeaderObj = SystemHeader() | |
|
|
144 | ||||
| 143 | radarControllerHeaderObj = RadarControllerHeader() |
|
145 | radarControllerHeaderObj = RadarControllerHeader() | |
| 144 | processingHeaderObj = ProcessingHeader() |
|
146 | processingHeaderObj = ProcessingHeader() | |
| 145 |
|
147 | |||
| 146 | lastBasicHeaderObj = BasicHeader(LOCALTIME) |
|
148 | lastBasicHeaderObj = BasicHeader(LOCALTIME) | |
| 147 |
|
149 | |||
| 148 | sts = firstBasicHeaderObj.read(fp) |
|
150 | sts = firstBasicHeaderObj.read(fp) | |
| 149 |
|
151 | |||
| 150 | if not(sts): |
|
152 | if not(sts): | |
| 151 | print("[Reading] Skipping the file %s because it has not a valid header" % (filename)) |
|
153 | print("[Reading] Skipping the file %s because it has not a valid header" % (filename)) | |
| 152 | return None |
|
154 | return None | |
| 153 |
|
155 | |||
| 154 | if not systemHeaderObj.read(fp): |
|
156 | if not systemHeaderObj.read(fp): | |
| 155 | return None |
|
157 | return None | |
| 156 |
|
158 | |||
| 157 | if not radarControllerHeaderObj.read(fp): |
|
159 | if not radarControllerHeaderObj.read(fp): | |
| 158 | return None |
|
160 | return None | |
| 159 |
|
161 | |||
| 160 | if not processingHeaderObj.read(fp): |
|
162 | if not processingHeaderObj.read(fp): | |
| 161 | return None |
|
163 | return None | |
| 162 |
|
164 | |||
| 163 | filesize = os.path.getsize(filename) |
|
165 | filesize = os.path.getsize(filename) | |
| 164 |
|
166 | |||
| 165 | offset = processingHeaderObj.blockSize + 24 # header size |
|
167 | offset = processingHeaderObj.blockSize + 24 # header size | |
| 166 |
|
168 | |||
| 167 | if filesize <= offset: |
|
169 | if filesize <= offset: | |
| 168 | print("[Reading] %s: This file has not enough data" % filename) |
|
170 | print("[Reading] %s: This file has not enough data" % filename) | |
| 169 | return None |
|
171 | return None | |
| 170 |
|
172 | |||
| 171 | fp.seek(-offset, 2) |
|
173 | fp.seek(-offset, 2) | |
| 172 |
|
174 | |||
| 173 | sts = lastBasicHeaderObj.read(fp) |
|
175 | sts = lastBasicHeaderObj.read(fp) | |
| 174 |
|
176 | |||
| 175 | fp.close() |
|
177 | fp.close() | |
| 176 |
|
178 | |||
| 177 | thisDatetime = lastBasicHeaderObj.datatime |
|
179 | thisDatetime = lastBasicHeaderObj.datatime | |
| 178 | thisTime_last_block = thisDatetime.time() |
|
180 | thisTime_last_block = thisDatetime.time() | |
| 179 |
|
181 | |||
| 180 | thisDatetime = firstBasicHeaderObj.datatime |
|
182 | thisDatetime = firstBasicHeaderObj.datatime | |
| 181 | thisDate = thisDatetime.date() |
|
183 | thisDate = thisDatetime.date() | |
| 182 | thisTime_first_block = thisDatetime.time() |
|
184 | thisTime_first_block = thisDatetime.time() | |
| 183 |
|
185 | |||
| 184 | # General case |
|
186 | # General case | |
| 185 | # o>>>>>>>>>>>>>><<<<<<<<<<<<<<o |
|
187 | # o>>>>>>>>>>>>>><<<<<<<<<<<<<<o | |
| 186 | #-----------o----------------------------o----------- |
|
188 | #-----------o----------------------------o----------- | |
| 187 | # startTime endTime |
|
189 | # startTime endTime | |
| 188 |
|
190 | |||
| 189 | if endTime >= startTime: |
|
191 | if endTime >= startTime: | |
| 190 | if (thisTime_last_block < startTime) or (thisTime_first_block > endTime): |
|
192 | if (thisTime_last_block < startTime) or (thisTime_first_block > endTime): | |
| 191 | return None |
|
193 | return None | |
| 192 |
|
194 | |||
| 193 | return thisDatetime |
|
195 | return thisDatetime | |
| 194 |
|
196 | |||
| 195 | # If endTime < startTime then endTime belongs to the next day |
|
197 | # If endTime < startTime then endTime belongs to the next day | |
| 196 |
|
198 | |||
| 197 | #<<<<<<<<<<<o o>>>>>>>>>>> |
|
199 | #<<<<<<<<<<<o o>>>>>>>>>>> | |
| 198 | #-----------o----------------------------o----------- |
|
200 | #-----------o----------------------------o----------- | |
| 199 | # endTime startTime |
|
201 | # endTime startTime | |
| 200 |
|
202 | |||
| 201 | if (thisDate == startDate) and (thisTime_last_block < startTime): |
|
203 | if (thisDate == startDate) and (thisTime_last_block < startTime): | |
| 202 | return None |
|
204 | return None | |
| 203 |
|
205 | |||
| 204 | if (thisDate == endDate) and (thisTime_first_block > endTime): |
|
206 | if (thisDate == endDate) and (thisTime_first_block > endTime): | |
| 205 | return None |
|
207 | return None | |
| 206 |
|
208 | |||
| 207 | if (thisTime_last_block < startTime) and (thisTime_first_block > endTime): |
|
209 | if (thisTime_last_block < startTime) and (thisTime_first_block > endTime): | |
| 208 | return None |
|
210 | return None | |
| 209 |
|
211 | |||
| 210 | return thisDatetime |
|
212 | return thisDatetime | |
| 211 |
|
213 | |||
| 212 |
|
214 | |||
| 213 | def isFolderInDateRange(folder, startDate=None, endDate=None): |
|
215 | def isFolderInDateRange(folder, startDate=None, endDate=None): | |
| 214 | """ |
|
216 | """ | |
| 215 | Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado. |
|
217 | Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado. | |
| 216 |
|
218 | |||
| 217 | Inputs: |
|
219 | Inputs: | |
| 218 | folder : nombre completo del directorio. |
|
220 | folder : nombre completo del directorio. | |
| 219 | Su formato deberia ser "/path_root/?YYYYDDD" |
|
221 | Su formato deberia ser "/path_root/?YYYYDDD" | |
| 220 |
|
222 | |||
| 221 | siendo: |
|
223 | siendo: | |
| 222 | YYYY : Anio (ejemplo 2015) |
|
224 | YYYY : Anio (ejemplo 2015) | |
| 223 | DDD : Dia del anio (ejemplo 305) |
|
225 | DDD : Dia del anio (ejemplo 305) | |
| 224 |
|
226 | |||
| 225 | startDate : fecha inicial del rango seleccionado en formato datetime.date |
|
227 | startDate : fecha inicial del rango seleccionado en formato datetime.date | |
| 226 |
|
228 | |||
| 227 | endDate : fecha final del rango seleccionado en formato datetime.date |
|
229 | endDate : fecha final del rango seleccionado en formato datetime.date | |
| 228 |
|
230 | |||
| 229 | Return: |
|
231 | Return: | |
| 230 | Boolean : Retorna True si el archivo de datos contiene datos en el rango de |
|
232 | Boolean : Retorna True si el archivo de datos contiene datos en el rango de | |
| 231 | fecha especificado, de lo contrario retorna False. |
|
233 | fecha especificado, de lo contrario retorna False. | |
| 232 | Excepciones: |
|
234 | Excepciones: | |
| 233 | Si el directorio no tiene el formato adecuado |
|
235 | Si el directorio no tiene el formato adecuado | |
| 234 | """ |
|
236 | """ | |
| 235 |
|
237 | |||
| 236 | basename = os.path.basename(folder) |
|
238 | basename = os.path.basename(folder) | |
| 237 |
|
239 | |||
| 238 | if not isRadarFolder(basename): |
|
240 | if not isRadarFolder(basename): | |
| 239 | print("The folder %s has not the rigth format" % folder) |
|
241 | print("The folder %s has not the rigth format" % folder) | |
| 240 | return 0 |
|
242 | return 0 | |
| 241 |
|
243 | |||
| 242 | if startDate and endDate: |
|
244 | if startDate and endDate: | |
| 243 | thisDate = getDateFromRadarFolder(basename) |
|
245 | thisDate = getDateFromRadarFolder(basename) | |
| 244 |
|
246 | |||
| 245 | if thisDate < startDate: |
|
247 | if thisDate < startDate: | |
| 246 | return 0 |
|
248 | return 0 | |
| 247 |
|
249 | |||
| 248 | if thisDate > endDate: |
|
250 | if thisDate > endDate: | |
| 249 | return 0 |
|
251 | return 0 | |
| 250 |
|
252 | |||
| 251 | return 1 |
|
253 | return 1 | |
| 252 |
|
254 | |||
| 253 |
|
255 | |||
| 254 | def isFileInDateRange(filename, startDate=None, endDate=None): |
|
256 | def isFileInDateRange(filename, startDate=None, endDate=None): | |
| 255 | """ |
|
257 | """ | |
| 256 | Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado. |
|
258 | Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado. | |
| 257 |
|
259 | |||
| 258 | Inputs: |
|
260 | Inputs: | |
| 259 | filename : nombre completo del archivo de datos en formato Jicamarca (.r) |
|
261 | filename : nombre completo del archivo de datos en formato Jicamarca (.r) | |
| 260 |
|
262 | |||
| 261 | Su formato deberia ser "?YYYYDDDsss" |
|
263 | Su formato deberia ser "?YYYYDDDsss" | |
| 262 |
|
264 | |||
| 263 | siendo: |
|
265 | siendo: | |
| 264 | YYYY : Anio (ejemplo 2015) |
|
266 | YYYY : Anio (ejemplo 2015) | |
| 265 | DDD : Dia del anio (ejemplo 305) |
|
267 | DDD : Dia del anio (ejemplo 305) | |
| 266 | sss : set |
|
268 | sss : set | |
| 267 |
|
269 | |||
| 268 | startDate : fecha inicial del rango seleccionado en formato datetime.date |
|
270 | startDate : fecha inicial del rango seleccionado en formato datetime.date | |
| 269 |
|
271 | |||
| 270 | endDate : fecha final del rango seleccionado en formato datetime.date |
|
272 | endDate : fecha final del rango seleccionado en formato datetime.date | |
| 271 |
|
273 | |||
| 272 | Return: |
|
274 | Return: | |
| 273 | Boolean : Retorna True si el archivo de datos contiene datos en el rango de |
|
275 | Boolean : Retorna True si el archivo de datos contiene datos en el rango de | |
| 274 | fecha especificado, de lo contrario retorna False. |
|
276 | fecha especificado, de lo contrario retorna False. | |
| 275 | Excepciones: |
|
277 | Excepciones: | |
| 276 | Si el archivo no tiene el formato adecuado |
|
278 | Si el archivo no tiene el formato adecuado | |
| 277 | """ |
|
279 | """ | |
| 278 |
|
280 | |||
| 279 | basename = os.path.basename(filename) |
|
281 | basename = os.path.basename(filename) | |
| 280 |
|
282 | |||
| 281 | if not isRadarFile(basename): |
|
283 | if not isRadarFile(basename): | |
| 282 | print("The filename %s has not the rigth format" % filename) |
|
284 | print("The filename %s has not the rigth format" % filename) | |
| 283 | return 0 |
|
285 | return 0 | |
| 284 |
|
286 | |||
| 285 | if startDate and endDate: |
|
287 | if startDate and endDate: | |
| 286 | thisDate = getDateFromRadarFile(basename) |
|
288 | thisDate = getDateFromRadarFile(basename) | |
| 287 |
|
289 | |||
| 288 | if thisDate < startDate: |
|
290 | if thisDate < startDate: | |
| 289 | return 0 |
|
291 | return 0 | |
| 290 |
|
292 | |||
| 291 | if thisDate > endDate: |
|
293 | if thisDate > endDate: | |
| 292 | return 0 |
|
294 | return 0 | |
| 293 |
|
295 | |||
| 294 | return 1 |
|
296 | return 1 | |
| 295 |
|
297 | |||
| 296 |
|
298 | |||
| 297 | def getFileFromSet(path, ext, set): |
|
299 | def getFileFromSet(path, ext, set): | |
| 298 | validFilelist = [] |
|
300 | validFilelist = [] | |
| 299 | fileList = os.listdir(path) |
|
301 | fileList = os.listdir(path) | |
| 300 |
|
302 | |||
| 301 | # 0 1234 567 89A BCDE |
|
303 | # 0 1234 567 89A BCDE | |
| 302 | # H YYYY DDD SSS .ext |
|
304 | # H YYYY DDD SSS .ext | |
| 303 |
|
305 | |||
| 304 | for thisFile in fileList: |
|
306 | for thisFile in fileList: | |
| 305 | try: |
|
307 | try: | |
| 306 | year = int(thisFile[1:5]) |
|
308 | year = int(thisFile[1:5]) | |
| 307 | doy = int(thisFile[5:8]) |
|
309 | doy = int(thisFile[5:8]) | |
| 308 | except: |
|
310 | except: | |
| 309 | continue |
|
311 | continue | |
| 310 |
|
312 | |||
| 311 | if (os.path.splitext(thisFile)[-1].lower() != ext.lower()): |
|
313 | if (os.path.splitext(thisFile)[-1].lower() != ext.lower()): | |
| 312 | continue |
|
314 | continue | |
| 313 |
|
315 | |||
| 314 | validFilelist.append(thisFile) |
|
316 | validFilelist.append(thisFile) | |
| 315 |
|
317 | |||
| 316 | myfile = fnmatch.filter( |
|
318 | myfile = fnmatch.filter( | |
| 317 | validFilelist, '*%4.4d%3.3d%3.3d*' % (year, doy, set)) |
|
319 | validFilelist, '*%4.4d%3.3d%3.3d*' % (year, doy, set)) | |
| 318 |
|
320 | |||
| 319 | if len(myfile) != 0: |
|
321 | if len(myfile) != 0: | |
| 320 | return myfile[0] |
|
322 | return myfile[0] | |
| 321 | else: |
|
323 | else: | |
| 322 | filename = '*%4.4d%3.3d%3.3d%s' % (year, doy, set, ext.lower()) |
|
324 | filename = '*%4.4d%3.3d%3.3d%s' % (year, doy, set, ext.lower()) | |
| 323 | print('the filename %s does not exist' % filename) |
|
325 | print('the filename %s does not exist' % filename) | |
| 324 | print('...going to the last file: ') |
|
326 | print('...going to the last file: ') | |
| 325 |
|
327 | |||
| 326 | if validFilelist: |
|
328 | if validFilelist: | |
| 327 | validFilelist = sorted(validFilelist, key=str.lower) |
|
329 | validFilelist = sorted(validFilelist, key=str.lower) | |
| 328 | return validFilelist[-1] |
|
330 | return validFilelist[-1] | |
| 329 |
|
331 | |||
| 330 | return None |
|
332 | return None | |
| 331 |
|
333 | |||
| 332 |
|
334 | |||
| 333 | def getlastFileFromPath(path, ext): |
|
335 | def getlastFileFromPath(path, ext): | |
| 334 | """ |
|
336 | """ | |
| 335 | Depura el fileList dejando solo los que cumplan el formato de "PYYYYDDDSSS.ext" |
|
337 | Depura el fileList dejando solo los que cumplan el formato de "PYYYYDDDSSS.ext" | |
| 336 | al final de la depuracion devuelve el ultimo file de la lista que quedo. |
|
338 | al final de la depuracion devuelve el ultimo file de la lista que quedo. | |
| 337 |
|
339 | |||
| 338 | Input: |
|
340 | Input: | |
| 339 | fileList : lista conteniendo todos los files (sin path) que componen una determinada carpeta |
|
341 | fileList : lista conteniendo todos los files (sin path) que componen una determinada carpeta | |
| 340 | ext : extension de los files contenidos en una carpeta |
|
342 | ext : extension de los files contenidos en una carpeta | |
| 341 |
|
343 | |||
| 342 | Return: |
|
344 | Return: | |
| 343 | El ultimo file de una determinada carpeta, no se considera el path. |
|
345 | El ultimo file de una determinada carpeta, no se considera el path. | |
| 344 | """ |
|
346 | """ | |
| 345 | validFilelist = [] |
|
347 | validFilelist = [] | |
| 346 | fileList = os.listdir(path) |
|
348 | fileList = os.listdir(path) | |
| 347 |
|
349 | |||
| 348 | # 0 1234 567 89A BCDE |
|
350 | # 0 1234 567 89A BCDE | |
| 349 | # H YYYY DDD SSS .ext |
|
351 | # H YYYY DDD SSS .ext | |
| 350 |
|
352 | |||
| 351 | for thisFile in fileList: |
|
353 | for thisFile in fileList: | |
| 352 |
|
354 | |||
| 353 | year = thisFile[1:5] |
|
355 | year = thisFile[1:5] | |
| 354 | if not isNumber(year): |
|
356 | if not isNumber(year): | |
| 355 | continue |
|
357 | continue | |
| 356 |
|
358 | |||
| 357 | doy = thisFile[5:8] |
|
359 | doy = thisFile[5:8] | |
| 358 | if not isNumber(doy): |
|
360 | if not isNumber(doy): | |
| 359 | continue |
|
361 | continue | |
| 360 |
|
362 | |||
| 361 | year = int(year) |
|
363 | year = int(year) | |
| 362 | doy = int(doy) |
|
364 | doy = int(doy) | |
| 363 |
|
365 | |||
| 364 | if (os.path.splitext(thisFile)[-1].lower() != ext.lower()): |
|
366 | if (os.path.splitext(thisFile)[-1].lower() != ext.lower()): | |
| 365 | continue |
|
367 | continue | |
| 366 |
|
368 | |||
| 367 | validFilelist.append(thisFile) |
|
369 | validFilelist.append(thisFile) | |
| 368 |
|
370 | |||
| 369 | if validFilelist: |
|
371 | if validFilelist: | |
| 370 | validFilelist = sorted(validFilelist, key=str.lower) |
|
372 | validFilelist = sorted(validFilelist, key=str.lower) | |
| 371 | return validFilelist[-1] |
|
373 | return validFilelist[-1] | |
| 372 |
|
374 | |||
| 373 | return None |
|
375 | return None | |
| 374 |
|
376 | |||
| 375 |
|
377 | |||
| 376 | def isRadarFolder(folder): |
|
378 | def isRadarFolder(folder): | |
| 377 | try: |
|
379 | try: | |
| 378 | year = int(folder[1:5]) |
|
380 | year = int(folder[1:5]) | |
| 379 | doy = int(folder[5:8]) |
|
381 | doy = int(folder[5:8]) | |
| 380 | except: |
|
382 | except: | |
| 381 | return 0 |
|
383 | return 0 | |
| 382 |
|
384 | |||
| 383 | return 1 |
|
385 | return 1 | |
| 384 |
|
386 | |||
| 385 |
|
387 | |||
| 386 | def isRadarFile(file): |
|
388 | def isRadarFile(file): | |
| 387 |
try: |
|
389 | try: | |
| 388 | year = int(file[1:5]) |
|
390 | year = int(file[1:5]) | |
| 389 | doy = int(file[5:8]) |
|
391 | doy = int(file[5:8]) | |
| 390 | set = int(file[8:11]) |
|
392 | set = int(file[8:11]) | |
| 391 | except: |
|
393 | except: | |
| 392 | return 0 |
|
394 | return 0 | |
| 393 |
|
395 | |||
| 394 | return 1 |
|
396 | return 1 | |
| 395 |
|
397 | |||
| 396 |
|
398 | |||
| 397 | def getDateFromRadarFile(file): |
|
399 | def getDateFromRadarFile(file): | |
| 398 |
try: |
|
400 | try: | |
| 399 | year = int(file[1:5]) |
|
401 | year = int(file[1:5]) | |
| 400 | doy = int(file[5:8]) |
|
402 | doy = int(file[5:8]) | |
| 401 |
set = int(file[8:11]) |
|
403 | set = int(file[8:11]) | |
| 402 | except: |
|
404 | except: | |
| 403 | return None |
|
405 | return None | |
| 404 |
|
406 | |||
| 405 | thisDate = datetime.date(year, 1, 1) + datetime.timedelta(doy - 1) |
|
407 | thisDate = datetime.date(year, 1, 1) + datetime.timedelta(doy - 1) | |
| 406 | return thisDate |
|
408 | return thisDate | |
| 407 |
|
409 | |||
| 408 |
|
410 | |||
| 409 | def getDateFromRadarFolder(folder): |
|
411 | def getDateFromRadarFolder(folder): | |
| 410 | try: |
|
412 | try: | |
| 411 | year = int(folder[1:5]) |
|
413 | year = int(folder[1:5]) | |
| 412 | doy = int(folder[5:8]) |
|
414 | doy = int(folder[5:8]) | |
| 413 | except: |
|
415 | except: | |
| 414 | return None |
|
416 | return None | |
| 415 |
|
417 | |||
| 416 | thisDate = datetime.date(year, 1, 1) + datetime.timedelta(doy - 1) |
|
418 | thisDate = datetime.date(year, 1, 1) + datetime.timedelta(doy - 1) | |
| 417 | return thisDate |
|
419 | return thisDate | |
| 418 |
|
420 | |||
| 419 | def parse_format(s, fmt): |
|
421 | def parse_format(s, fmt): | |
| 420 |
|
422 | |||
| 421 | for i in range(fmt.count('%')): |
|
423 | for i in range(fmt.count('%')): | |
| 422 | x = fmt.index('%') |
|
424 | x = fmt.index('%') | |
| 423 | d = DT_DIRECTIVES[fmt[x:x+2]] |
|
425 | d = DT_DIRECTIVES[fmt[x:x+2]] | |
| 424 | fmt = fmt.replace(fmt[x:x+2], s[x:x+d]) |
|
426 | fmt = fmt.replace(fmt[x:x+2], s[x:x+d]) | |
| 425 | return fmt |
|
427 | return fmt | |
| 426 |
|
428 | |||
| 427 | class Reader(object): |
|
429 | class Reader(object): | |
| 428 |
|
430 | |||
| 429 | c = 3E8 |
|
431 | c = 3E8 | |
| 430 | isConfig = False |
|
432 | isConfig = False | |
| 431 | dtype = None |
|
433 | dtype = None | |
| 432 | pathList = [] |
|
434 | pathList = [] | |
| 433 | filenameList = [] |
|
435 | filenameList = [] | |
| 434 | datetimeList = [] |
|
436 | datetimeList = [] | |
| 435 | filename = None |
|
437 | filename = None | |
| 436 | ext = None |
|
438 | ext = None | |
| 437 | flagIsNewFile = 1 |
|
439 | flagIsNewFile = 1 | |
| 438 | flagDiscontinuousBlock = 0 |
|
440 | flagDiscontinuousBlock = 0 | |
| 439 | flagIsNewBlock = 0 |
|
441 | flagIsNewBlock = 0 | |
| 440 | flagNoMoreFiles = 0 |
|
442 | flagNoMoreFiles = 0 | |
| 441 | fp = None |
|
443 | fp = None | |
| 442 | firstHeaderSize = 0 |
|
444 | firstHeaderSize = 0 | |
| 443 | basicHeaderSize = 24 |
|
445 | basicHeaderSize = 24 | |
| 444 | versionFile = 1103 |
|
446 | versionFile = 1103 | |
| 445 | fileSize = None |
|
447 | fileSize = None | |
| 446 | fileSizeByHeader = None |
|
448 | fileSizeByHeader = None | |
| 447 | fileIndex = -1 |
|
449 | fileIndex = -1 | |
| 448 | profileIndex = None |
|
450 | profileIndex = None | |
| 449 | blockIndex = 0 |
|
451 | blockIndex = 0 | |
| 450 | nTotalBlocks = 0 |
|
452 | nTotalBlocks = 0 | |
| 451 | maxTimeStep = 30 |
|
453 | maxTimeStep = 30 | |
| 452 | lastUTTime = None |
|
454 | lastUTTime = None | |
| 453 | datablock = None |
|
455 | datablock = None | |
| 454 | dataOut = None |
|
456 | dataOut = None | |
| 455 | getByBlock = False |
|
457 | getByBlock = False | |
| 456 | path = None |
|
458 | path = None | |
| 457 | startDate = None |
|
459 | startDate = None | |
| 458 | endDate = None |
|
460 | endDate = None | |
| 459 | startTime = datetime.time(0, 0, 0) |
|
461 | startTime = datetime.time(0, 0, 0) | |
| 460 | endTime = datetime.time(23, 59, 59) |
|
462 | endTime = datetime.time(23, 59, 59) | |
| 461 | set = None |
|
463 | set = None | |
| 462 | expLabel = "" |
|
464 | expLabel = "" | |
| 463 | online = False |
|
465 | online = False | |
| 464 | delay = 60 |
|
466 | delay = 60 | |
| 465 | nTries = 3 # quantity tries |
|
467 | nTries = 3 # quantity tries | |
| 466 | nFiles = 3 # number of files for searching |
|
468 | nFiles = 3 # number of files for searching | |
| 467 | walk = True |
|
469 | walk = True | |
| 468 | getblock = False |
|
470 | getblock = False | |
| 469 | nTxs = 1 |
|
471 | nTxs = 1 | |
| 470 | realtime = False |
|
472 | realtime = False | |
| 471 | blocksize = 0 |
|
473 | blocksize = 0 | |
| 472 | blocktime = None |
|
474 | blocktime = None | |
| 473 | warnings = True |
|
475 | warnings = True | |
| 474 | verbose = True |
|
476 | verbose = True | |
| 475 | server = None |
|
477 | server = None | |
| 476 | format = None |
|
478 | format = None | |
| 477 | oneDDict = None |
|
479 | oneDDict = None | |
| 478 | twoDDict = None |
|
480 | twoDDict = None | |
| 479 | independentParam = None |
|
481 | independentParam = None | |
| 480 | filefmt = None |
|
482 | filefmt = None | |
| 481 | folderfmt = None |
|
483 | folderfmt = None | |
| 482 | open_file = open |
|
484 | open_file = open | |
| 483 | open_mode = 'rb' |
|
485 | open_mode = 'rb' | |
| 484 |
|
486 | |||
| 485 | def run(self): |
|
487 | def run(self): | |
| 486 |
|
488 | |||
| 487 |
raise NotImplementedError |
|
489 | raise NotImplementedError | |
| 488 |
|
490 | |||
| 489 | def getAllowedArgs(self): |
|
491 | def getAllowedArgs(self): | |
| 490 | if hasattr(self, '__attrs__'): |
|
492 | if hasattr(self, '__attrs__'): | |
| 491 | return self.__attrs__ |
|
493 | return self.__attrs__ | |
| 492 | else: |
|
494 | else: | |
| 493 | return inspect.getargspec(self.run).args |
|
495 | return inspect.getargspec(self.run).args | |
| 494 |
|
496 | |||
| 495 | def set_kwargs(self, **kwargs): |
|
497 | def set_kwargs(self, **kwargs): | |
| 496 |
|
498 | |||
| 497 | for key, value in kwargs.items(): |
|
499 | for key, value in kwargs.items(): | |
| 498 | setattr(self, key, value) |
|
500 | setattr(self, key, value) | |
| 499 |
|
501 | |||
| 500 | def find_folders(self, path, startDate, endDate, folderfmt, last=False): |
|
502 | def find_folders(self, path, startDate, endDate, folderfmt, last=False): | |
| 501 |
|
503 | |||
| 502 |
folders = [x for f in path.split(',') |
|
504 | folders = [x for f in path.split(',') | |
| 503 | for x in os.listdir(f) if os.path.isdir(os.path.join(f, x))] |
|
505 | for x in os.listdir(f) if os.path.isdir(os.path.join(f, x))] | |
| 504 | folders.sort() |
|
506 | folders.sort() | |
| 505 |
|
507 | |||
| 506 | if last: |
|
508 | if last: | |
| 507 | folders = [folders[-1]] |
|
509 | folders = [folders[-1]] | |
| 508 |
|
510 | |||
| 509 |
for folder in folders: |
|
511 | for folder in folders: | |
| 510 |
try: |
|
512 | try: | |
| 511 |
dt = datetime.datetime.strptime(parse_format(folder, folderfmt), folderfmt).date() |
|
513 | dt = datetime.datetime.strptime(parse_format(folder, folderfmt), folderfmt).date() | |
| 512 | if dt >= startDate and dt <= endDate: |
|
514 | if dt >= startDate and dt <= endDate: | |
| 513 | yield os.path.join(path, folder) |
|
515 | yield os.path.join(path, folder) | |
| 514 | else: |
|
516 | else: | |
| 515 | log.log('Skiping folder {}'.format(folder), self.name) |
|
517 | log.log('Skiping folder {}'.format(folder), self.name) | |
| 516 | except Exception as e: |
|
518 | except Exception as e: | |
| 517 | log.log('Skiping folder {}'.format(folder), self.name) |
|
519 | log.log('Skiping folder {}'.format(folder), self.name) | |
| 518 | continue |
|
520 | continue | |
| 519 | return |
|
521 | return | |
| 520 |
|
522 | |||
| 521 |
def find_files(self, folders, ext, filefmt, startDate=None, endDate=None, |
|
523 | def find_files(self, folders, ext, filefmt, startDate=None, endDate=None, | |
| 522 | expLabel='', last=False): |
|
524 | expLabel='', last=False): | |
| 523 |
|
525 | |||
| 524 |
for path in folders: |
|
526 | for path in folders: | |
| 525 | files = glob.glob1(path, '*{}'.format(ext)) |
|
527 | files = glob.glob1(path, '*{}'.format(ext)) | |
| 526 | files.sort() |
|
528 | files.sort() | |
| 527 | if last: |
|
529 | if last: | |
| 528 |
if files: |
|
530 | if files: | |
| 529 | fo = files[-1] |
|
531 | fo = files[-1] | |
| 530 |
try: |
|
532 | try: | |
| 531 | dt = datetime.datetime.strptime(parse_format(fo, filefmt), filefmt).date() |
|
533 | dt = datetime.datetime.strptime(parse_format(fo, filefmt), filefmt).date() | |
| 532 |
yield os.path.join(path, expLabel, fo) |
|
534 | yield os.path.join(path, expLabel, fo) | |
| 533 |
except Exception as e: |
|
535 | except Exception as e: | |
| 534 | pass |
|
536 | pass | |
| 535 | return |
|
537 | return | |
| 536 | else: |
|
538 | else: | |
| 537 | return |
|
539 | return | |
| 538 |
|
540 | |||
| 539 | for fo in files: |
|
541 | for fo in files: | |
| 540 |
try: |
|
542 | try: | |
| 541 |
dt = datetime.datetime.strptime(parse_format(fo, filefmt), filefmt).date() |
|
543 | dt = datetime.datetime.strptime(parse_format(fo, filefmt), filefmt).date() | |
|
|
544 | #print(dt) | |||
|
|
545 | #print(startDate) | |||
|
|
546 | #print(endDate) | |||
| 542 | if dt >= startDate and dt <= endDate: |
|
547 | if dt >= startDate and dt <= endDate: | |
|
|
548 | ||||
| 543 | yield os.path.join(path, expLabel, fo) |
|
549 | yield os.path.join(path, expLabel, fo) | |
|
|
550 | ||||
| 544 | else: |
|
551 | else: | |
|
|
552 | ||||
| 545 | log.log('Skiping file {}'.format(fo), self.name) |
|
553 | log.log('Skiping file {}'.format(fo), self.name) | |
| 546 | except Exception as e: |
|
554 | except Exception as e: | |
| 547 | log.log('Skiping file {}'.format(fo), self.name) |
|
555 | log.log('Skiping file {}'.format(fo), self.name) | |
| 548 |
continue |
|
556 | continue | |
| 549 |
|
557 | |||
| 550 | def searchFilesOffLine(self, path, startDate, endDate, |
|
558 | def searchFilesOffLine(self, path, startDate, endDate, | |
| 551 |
expLabel, ext, walk, |
|
559 | expLabel, ext, walk, | |
| 552 | filefmt, folderfmt): |
|
560 | filefmt, folderfmt): | |
| 553 | """Search files in offline mode for the given arguments |
|
561 | """Search files in offline mode for the given arguments | |
| 554 |
|
562 | |||
| 555 | Return: |
|
563 | Return: | |
| 556 | Generator of files |
|
564 | Generator of files | |
| 557 | """ |
|
565 | """ | |
| 558 |
|
566 | |||
| 559 | if walk: |
|
567 | if walk: | |
| 560 | folders = self.find_folders( |
|
568 | folders = self.find_folders( | |
| 561 | path, startDate, endDate, folderfmt) |
|
569 | path, startDate, endDate, folderfmt) | |
| 562 | else: |
|
570 | else: | |
| 563 | folders = path.split(',') |
|
571 | folders = path.split(',') | |
| 564 |
|
572 | |||
| 565 | return self.find_files( |
|
573 | return self.find_files( | |
| 566 |
folders, ext, filefmt, startDate, endDate, expLabel) |
|
574 | folders, ext, filefmt, startDate, endDate, expLabel) | |
| 567 |
|
575 | |||
| 568 | def searchFilesOnLine(self, path, startDate, endDate, |
|
576 | def searchFilesOnLine(self, path, startDate, endDate, | |
| 569 |
expLabel, ext, walk, |
|
577 | expLabel, ext, walk, | |
| 570 | filefmt, folderfmt): |
|
578 | filefmt, folderfmt): | |
| 571 | """Search for the last file of the last folder |
|
579 | """Search for the last file of the last folder | |
| 572 |
|
580 | |||
| 573 | Arguments: |
|
581 | Arguments: | |
| 574 | path : carpeta donde estan contenidos los files que contiene data |
|
582 | path : carpeta donde estan contenidos los files que contiene data | |
| 575 | expLabel : Nombre del subexperimento (subfolder) |
|
583 | expLabel : Nombre del subexperimento (subfolder) | |
| 576 | ext : extension de los files |
|
584 | ext : extension de los files | |
| 577 | walk : Si es habilitado no realiza busquedas dentro de los ubdirectorios (doypath) |
|
585 | walk : Si es habilitado no realiza busquedas dentro de los ubdirectorios (doypath) | |
| 578 |
|
586 | |||
| 579 | Return: |
|
587 | Return: | |
| 580 | generator with the full path of last filename |
|
588 | generator with the full path of last filename | |
| 581 | """ |
|
589 | """ | |
| 582 |
|
590 | |||
| 583 | if walk: |
|
591 | if walk: | |
| 584 | folders = self.find_folders( |
|
592 | folders = self.find_folders( | |
| 585 | path, startDate, endDate, folderfmt, last=True) |
|
593 | path, startDate, endDate, folderfmt, last=True) | |
| 586 | else: |
|
594 | else: | |
| 587 | folders = path.split(',') |
|
595 | folders = path.split(',') | |
| 588 |
|
596 | |||
| 589 | return self.find_files( |
|
597 | return self.find_files( | |
| 590 | folders, ext, filefmt, startDate, endDate, expLabel, last=True) |
|
598 | folders, ext, filefmt, startDate, endDate, expLabel, last=True) | |
| 591 |
|
599 | |||
| 592 | def setNextFile(self): |
|
600 | def setNextFile(self): | |
| 593 | """Set the next file to be readed open it and parse de file header""" |
|
601 | """Set the next file to be readed open it and parse de file header""" | |
| 594 |
|
602 | |||
|
|
603 | #print("fp: ",self.fp) | |||
| 595 | while True: |
|
604 | while True: | |
|
|
605 | ||||
|
|
606 | #print(self.fp) | |||
| 596 | if self.fp != None: |
|
607 | if self.fp != None: | |
| 597 |
self.fp.close() |
|
608 | self.fp.close() | |
| 598 |
|
609 | |||
|
|
610 | #print("setNextFile") | |||
|
|
611 | #print("BEFORE OPENING",self.filename) | |||
| 599 | if self.online: |
|
612 | if self.online: | |
| 600 | newFile = self.setNextFileOnline() |
|
613 | newFile = self.setNextFileOnline() | |
|
|
614 | ||||
| 601 | else: |
|
615 | else: | |
|
|
616 | ||||
| 602 | newFile = self.setNextFileOffline() |
|
617 | newFile = self.setNextFileOffline() | |
| 603 |
|
618 | |||
|
|
619 | #print("newFile: ",newFile) | |||
| 604 | if not(newFile): |
|
620 | if not(newFile): | |
|
|
621 | ||||
| 605 | if self.online: |
|
622 | if self.online: | |
| 606 | raise schainpy.admin.SchainError('Time to wait for new files reach') |
|
623 | raise schainpy.admin.SchainError('Time to wait for new files reach') | |
| 607 | else: |
|
624 | else: | |
| 608 | if self.fileIndex == -1: |
|
625 | if self.fileIndex == -1: | |
|
|
626 | #print("OKK") | |||
| 609 | raise schainpy.admin.SchainWarning('No files found in the given path') |
|
627 | raise schainpy.admin.SchainWarning('No files found in the given path') | |
| 610 | else: |
|
628 | else: | |
|
|
629 | ||||
| 611 | raise schainpy.admin.SchainWarning('No more files to read') |
|
630 | raise schainpy.admin.SchainWarning('No more files to read') | |
| 612 |
|
631 | |||
| 613 | if self.verifyFile(self.filename): |
|
632 | if self.verifyFile(self.filename): | |
|
|
633 | ||||
| 614 | break |
|
634 | break | |
| 615 |
|
635 | |||
|
|
636 | ##print("BEFORE OPENING",self.filename) | |||
|
|
637 | ||||
| 616 | log.log('Opening file: %s' % self.filename, self.name) |
|
638 | log.log('Opening file: %s' % self.filename, self.name) | |
| 617 |
|
639 | |||
| 618 | self.readFirstHeader() |
|
640 | self.readFirstHeader() | |
| 619 | self.nReadBlocks = 0 |
|
641 | self.nReadBlocks = 0 | |
| 620 |
|
642 | |||
| 621 | def setNextFileOnline(self): |
|
643 | def setNextFileOnline(self): | |
| 622 | """Check for the next file to be readed in online mode. |
|
644 | """Check for the next file to be readed in online mode. | |
| 623 |
|
645 | |||
| 624 | Set: |
|
646 | Set: | |
| 625 | self.filename |
|
647 | self.filename | |
| 626 | self.fp |
|
648 | self.fp | |
| 627 | self.filesize |
|
649 | self.filesize | |
| 628 |
|
650 | |||
| 629 | Return: |
|
651 | Return: | |
| 630 | boolean |
|
652 | boolean | |
| 631 |
|
653 | |||
| 632 | """ |
|
654 | """ | |
|
|
655 | ||||
| 633 | nextFile = True |
|
656 | nextFile = True | |
| 634 | nextDay = False |
|
657 | nextDay = False | |
| 635 |
|
658 | |||
| 636 |
for nFiles in range(self.nFiles+1): |
|
659 | for nFiles in range(self.nFiles+1): | |
| 637 | for nTries in range(self.nTries): |
|
660 | for nTries in range(self.nTries): | |
| 638 | fullfilename, filename = self.checkForRealPath(nextFile, nextDay) |
|
661 | fullfilename, filename = self.checkForRealPath(nextFile, nextDay) | |
| 639 | if fullfilename is not None: |
|
662 | if fullfilename is not None: | |
| 640 | break |
|
663 | break | |
| 641 | log.warning( |
|
664 | log.warning( | |
| 642 | "Waiting %0.2f sec for the next file: \"%s\" , try %02d ..." % (self.delay, filename, nTries + 1), |
|
665 | "Waiting %0.2f sec for the next file: \"%s\" , try %02d ..." % (self.delay, filename, nTries + 1), | |
| 643 | self.name) |
|
666 | self.name) | |
| 644 | time.sleep(self.delay) |
|
667 | time.sleep(self.delay) | |
| 645 | nextFile = False |
|
668 | nextFile = False | |
| 646 |
continue |
|
669 | continue | |
| 647 |
|
670 | |||
| 648 | if fullfilename is not None: |
|
671 | if fullfilename is not None: | |
| 649 | break |
|
672 | break | |
| 650 |
|
673 | |||
| 651 | self.nTries = 1 |
|
674 | #self.nTries = 1 | |
| 652 |
nextFile = True |
|
675 | nextFile = True | |
| 653 |
|
676 | |||
| 654 | if nFiles == (self.nFiles - 1): |
|
677 | if nFiles == (self.nFiles - 1): | |
| 655 | log.log('Trying with next day...', self.name) |
|
678 | log.log('Trying with next day...', self.name) | |
| 656 | nextDay = True |
|
679 | nextDay = True | |
| 657 |
self.nTries = 3 |
|
680 | self.nTries = 3 | |
| 658 |
|
681 | |||
| 659 | if fullfilename: |
|
682 | if fullfilename: | |
| 660 | self.fileSize = os.path.getsize(fullfilename) |
|
683 | self.fileSize = os.path.getsize(fullfilename) | |
| 661 | self.filename = fullfilename |
|
684 | self.filename = fullfilename | |
| 662 | self.flagIsNewFile = 1 |
|
685 | self.flagIsNewFile = 1 | |
| 663 | if self.fp != None: |
|
686 | if self.fp != None: | |
| 664 | self.fp.close() |
|
687 | self.fp.close() | |
|
|
688 | #print(fullfilename) | |||
| 665 | self.fp = self.open_file(fullfilename, self.open_mode) |
|
689 | self.fp = self.open_file(fullfilename, self.open_mode) | |
|
|
690 | ||||
| 666 | self.flagNoMoreFiles = 0 |
|
691 | self.flagNoMoreFiles = 0 | |
| 667 | self.fileIndex += 1 |
|
692 | self.fileIndex += 1 | |
| 668 | return 1 |
|
693 | return 1 | |
| 669 |
else: |
|
694 | else: | |
| 670 | return 0 |
|
695 | return 0 | |
| 671 |
|
696 | |||
| 672 | def setNextFileOffline(self): |
|
697 | def setNextFileOffline(self): | |
| 673 | """Open the next file to be readed in offline mode""" |
|
698 | """Open the next file to be readed in offline mode""" | |
| 674 |
|
699 | |||
| 675 | try: |
|
700 | try: | |
| 676 | filename = next(self.filenameList) |
|
701 | filename = next(self.filenameList) | |
| 677 | self.fileIndex +=1 |
|
702 | self.fileIndex +=1 | |
| 678 | except StopIteration: |
|
703 | except StopIteration: | |
| 679 | self.flagNoMoreFiles = 1 |
|
704 | self.flagNoMoreFiles = 1 | |
| 680 |
return 0 |
|
705 | return 0 | |
| 681 |
|
706 | #print(self.fileIndex) | ||
|
|
707 | #print(filename) | |||
| 682 | self.filename = filename |
|
708 | self.filename = filename | |
| 683 | self.fileSize = os.path.getsize(filename) |
|
709 | self.fileSize = os.path.getsize(filename) | |
| 684 | self.fp = self.open_file(filename, self.open_mode) |
|
710 | self.fp = self.open_file(filename, self.open_mode) | |
| 685 | self.flagIsNewFile = 1 |
|
711 | self.flagIsNewFile = 1 | |
| 686 |
|
712 | |||
| 687 | return 1 |
|
713 | return 1 | |
| 688 |
|
714 | |||
| 689 | @staticmethod |
|
715 | @staticmethod | |
| 690 | def isDateTimeInRange(dt, startDate, endDate, startTime, endTime): |
|
716 | def isDateTimeInRange(dt, startDate, endDate, startTime, endTime): | |
| 691 | """Check if the given datetime is in range""" |
|
717 | """Check if the given datetime is in range""" | |
| 692 |
|
718 | |||
| 693 | if startDate <= dt.date() <= endDate: |
|
719 | if startDate <= dt.date() <= endDate: | |
| 694 | if startTime <= dt.time() <= endTime: |
|
720 | if startTime <= dt.time() <= endTime: | |
| 695 | return True |
|
721 | return True | |
| 696 | return False |
|
722 | return False | |
| 697 |
|
723 | |||
| 698 | def verifyFile(self, filename): |
|
724 | def verifyFile(self, filename): | |
| 699 | """Check for a valid file |
|
725 | """Check for a valid file | |
| 700 |
|
726 | |||
| 701 | Arguments: |
|
727 | Arguments: | |
| 702 | filename -- full path filename |
|
728 | filename -- full path filename | |
| 703 |
|
729 | |||
| 704 | Return: |
|
730 | Return: | |
| 705 | boolean |
|
731 | boolean | |
| 706 | """ |
|
732 | """ | |
| 707 |
|
733 | |||
| 708 | return True |
|
734 | return True | |
| 709 |
|
735 | |||
| 710 | def checkForRealPath(self, nextFile, nextDay): |
|
736 | def checkForRealPath(self, nextFile, nextDay): | |
| 711 | """Check if the next file to be readed exists""" |
|
737 | """Check if the next file to be readed exists""" | |
| 712 |
|
738 | |||
| 713 | raise NotImplementedError |
|
739 | raise NotImplementedError | |
| 714 |
|
740 | |||
| 715 | def readFirstHeader(self): |
|
741 | def readFirstHeader(self): | |
| 716 | """Parse the file header""" |
|
742 | """Parse the file header""" | |
| 717 |
|
743 | |||
|
|
744 | ||||
| 718 | pass |
|
745 | pass | |
| 719 |
|
746 | |||
| 720 | def waitDataBlock(self, pointer_location, blocksize=None): |
|
747 | def waitDataBlock(self, pointer_location, blocksize=None): | |
| 721 | """ |
|
748 | """ | |
| 722 | """ |
|
749 | """ | |
| 723 |
|
750 | |||
| 724 | currentPointer = pointer_location |
|
751 | currentPointer = pointer_location | |
| 725 | if blocksize is None: |
|
752 | if blocksize is None: | |
| 726 | neededSize = self.processingHeaderObj.blockSize # + self.basicHeaderSize |
|
753 | neededSize = self.processingHeaderObj.blockSize # + self.basicHeaderSize | |
| 727 | else: |
|
754 | else: | |
| 728 | neededSize = blocksize |
|
755 | neededSize = blocksize | |
| 729 |
|
756 | |||
| 730 | for nTries in range(self.nTries): |
|
757 | for nTries in range(self.nTries): | |
| 731 | self.fp.close() |
|
758 | self.fp.close() | |
| 732 | self.fp = open(self.filename, 'rb') |
|
759 | self.fp = open(self.filename, 'rb') | |
| 733 | self.fp.seek(currentPointer) |
|
760 | self.fp.seek(currentPointer) | |
| 734 |
|
761 | |||
| 735 | self.fileSize = os.path.getsize(self.filename) |
|
762 | self.fileSize = os.path.getsize(self.filename) | |
| 736 | currentSize = self.fileSize - currentPointer |
|
763 | currentSize = self.fileSize - currentPointer | |
| 737 |
|
764 | |||
| 738 | if (currentSize >= neededSize): |
|
765 | if (currentSize >= neededSize): | |
| 739 | return 1 |
|
766 | return 1 | |
| 740 |
|
767 | |||
| 741 | log.warning( |
|
768 | log.warning( | |
| 742 | "Waiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries + 1), |
|
769 | "Waiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries + 1), | |
| 743 | self.name |
|
770 | self.name | |
| 744 | ) |
|
771 | ) | |
| 745 | time.sleep(self.delay) |
|
772 | time.sleep(self.delay) | |
| 746 |
|
773 | |||
| 747 | return 0 |
|
774 | return 0 | |
| 748 |
|
775 | |||
| 749 | class JRODataReader(Reader): |
|
776 | class JRODataReader(Reader): | |
| 750 |
|
777 | |||
| 751 | utc = 0 |
|
778 | utc = 0 | |
| 752 | nReadBlocks = 0 |
|
779 | nReadBlocks = 0 | |
| 753 | foldercounter = 0 |
|
780 | foldercounter = 0 | |
| 754 | firstHeaderSize = 0 |
|
781 | firstHeaderSize = 0 | |
| 755 | basicHeaderSize = 24 |
|
782 | basicHeaderSize = 24 | |
| 756 | __isFirstTimeOnline = 1 |
|
783 | __isFirstTimeOnline = 1 | |
| 757 | filefmt = "*%Y%j***" |
|
784 | filefmt = "*%Y%j***" | |
| 758 | folderfmt = "*%Y%j" |
|
785 | folderfmt = "*%Y%j" | |
| 759 | __attrs__ = ['path', 'startDate', 'endDate', 'startTime', 'endTime', 'online', 'delay', 'walk'] |
|
786 | __attrs__ = ['path', 'startDate', 'endDate', 'startTime', 'endTime', 'online', 'delay', 'walk'] | |
| 760 |
|
787 | |||
| 761 | def getDtypeWidth(self): |
|
788 | def getDtypeWidth(self): | |
| 762 |
|
789 | |||
| 763 | dtype_index = get_dtype_index(self.dtype) |
|
790 | dtype_index = get_dtype_index(self.dtype) | |
| 764 | dtype_width = get_dtype_width(dtype_index) |
|
791 | dtype_width = get_dtype_width(dtype_index) | |
| 765 |
|
792 | |||
| 766 | return dtype_width |
|
793 | return dtype_width | |
| 767 |
|
794 | |||
| 768 | def checkForRealPath(self, nextFile, nextDay): |
|
795 | def checkForRealPath(self, nextFile, nextDay): | |
| 769 | """Check if the next file to be readed exists. |
|
796 | """Check if the next file to be readed exists. | |
| 770 |
|
797 | |||
| 771 | Example : |
|
798 | Example : | |
| 772 | nombre correcto del file es .../.../D2009307/P2009307367.ext |
|
799 | nombre correcto del file es .../.../D2009307/P2009307367.ext | |
| 773 |
|
800 | |||
| 774 | Entonces la funcion prueba con las siguientes combinaciones |
|
801 | Entonces la funcion prueba con las siguientes combinaciones | |
| 775 | .../.../y2009307367.ext |
|
802 | .../.../y2009307367.ext | |
| 776 | .../.../Y2009307367.ext |
|
803 | .../.../Y2009307367.ext | |
| 777 | .../.../x2009307/y2009307367.ext |
|
804 | .../.../x2009307/y2009307367.ext | |
| 778 | .../.../x2009307/Y2009307367.ext |
|
805 | .../.../x2009307/Y2009307367.ext | |
| 779 | .../.../X2009307/y2009307367.ext |
|
806 | .../.../X2009307/y2009307367.ext | |
| 780 | .../.../X2009307/Y2009307367.ext |
|
807 | .../.../X2009307/Y2009307367.ext | |
| 781 | siendo para este caso, la ultima combinacion de letras, identica al file buscado |
|
808 | siendo para este caso, la ultima combinacion de letras, identica al file buscado | |
| 782 |
|
809 | |||
| 783 | Return: |
|
810 | Return: | |
| 784 | str -- fullpath of the file |
|
811 | str -- fullpath of the file | |
| 785 | """ |
|
812 | """ | |
| 786 |
|
813 | |||
| 787 |
|
814 | |||
| 788 | if nextFile: |
|
815 | if nextFile: | |
| 789 | self.set += 1 |
|
816 | self.set += 1 | |
| 790 | if nextDay: |
|
817 | if nextDay: | |
| 791 | self.set = 0 |
|
818 | self.set = 0 | |
| 792 | self.doy += 1 |
|
819 | self.doy += 1 | |
| 793 | foldercounter = 0 |
|
820 | foldercounter = 0 | |
| 794 | prefixDirList = [None, 'd', 'D'] |
|
821 | prefixDirList = [None, 'd', 'D'] | |
| 795 | if self.ext.lower() == ".r": # voltage |
|
822 | if self.ext.lower() == ".r": # voltage | |
| 796 | prefixFileList = ['d', 'D'] |
|
823 | prefixFileList = ['d', 'D'] | |
| 797 | elif self.ext.lower() == ".pdata": # spectra |
|
824 | elif self.ext.lower() == ".pdata": # spectra | |
| 798 | prefixFileList = ['p', 'P'] |
|
825 | prefixFileList = ['p', 'P'] | |
| 799 |
|
826 | |||
|
|
827 | ##############DP############## | |||
|
|
828 | ||||
|
|
829 | elif self.ext.lower() == ".dat": # dat | |||
|
|
830 | prefixFileList = ['z', 'Z'] | |||
|
|
831 | ||||
|
|
832 | ||||
|
|
833 | ||||
|
|
834 | ##############DP############## | |||
| 800 | # barrido por las combinaciones posibles |
|
835 | # barrido por las combinaciones posibles | |
| 801 | for prefixDir in prefixDirList: |
|
836 | for prefixDir in prefixDirList: | |
| 802 | thispath = self.path |
|
837 | thispath = self.path | |
| 803 | if prefixDir != None: |
|
838 | if prefixDir != None: | |
| 804 | # formo el nombre del directorio xYYYYDDD (x=d o x=D) |
|
839 | # formo el nombre del directorio xYYYYDDD (x=d o x=D) | |
| 805 | if foldercounter == 0: |
|
840 | if foldercounter == 0: | |
| 806 | thispath = os.path.join(self.path, "%s%04d%03d" % |
|
841 | thispath = os.path.join(self.path, "%s%04d%03d" % | |
| 807 | (prefixDir, self.year, self.doy)) |
|
842 | (prefixDir, self.year, self.doy)) | |
| 808 | else: |
|
843 | else: | |
| 809 | thispath = os.path.join(self.path, "%s%04d%03d_%02d" % ( |
|
844 | thispath = os.path.join(self.path, "%s%04d%03d_%02d" % ( | |
| 810 | prefixDir, self.year, self.doy, foldercounter)) |
|
845 | prefixDir, self.year, self.doy, foldercounter)) | |
| 811 | for prefixFile in prefixFileList: # barrido por las dos combinaciones posibles de "D" |
|
846 | for prefixFile in prefixFileList: # barrido por las dos combinaciones posibles de "D" | |
| 812 | # formo el nombre del file xYYYYDDDSSS.ext |
|
847 | # formo el nombre del file xYYYYDDDSSS.ext | |
| 813 | filename = "%s%04d%03d%03d%s" % (prefixFile, self.year, self.doy, self.set, self.ext) |
|
848 | filename = "%s%04d%03d%03d%s" % (prefixFile, self.year, self.doy, self.set, self.ext) | |
| 814 | fullfilename = os.path.join( |
|
849 | fullfilename = os.path.join( | |
| 815 | thispath, filename) |
|
850 | thispath, filename) | |
| 816 |
|
851 | |||
| 817 | if os.path.exists(fullfilename): |
|
852 | if os.path.exists(fullfilename): | |
| 818 | return fullfilename, filename |
|
853 | return fullfilename, filename | |
| 819 |
|
854 | |||
| 820 |
return None, filename |
|
855 | return None, filename | |
| 821 |
|
856 | |||
| 822 | def __waitNewBlock(self): |
|
857 | def __waitNewBlock(self): | |
| 823 | """ |
|
858 | """ | |
| 824 | Return 1 si se encontro un nuevo bloque de datos, 0 de otra forma. |
|
859 | Return 1 si se encontro un nuevo bloque de datos, 0 de otra forma. | |
| 825 |
|
860 | |||
| 826 | Si el modo de lectura es OffLine siempre retorn 0 |
|
861 | Si el modo de lectura es OffLine siempre retorn 0 | |
| 827 | """ |
|
862 | """ | |
| 828 | if not self.online: |
|
863 | if not self.online: | |
| 829 | return 0 |
|
864 | return 0 | |
| 830 |
|
865 | |||
| 831 | if (self.nReadBlocks >= self.processingHeaderObj.dataBlocksPerFile): |
|
866 | if (self.nReadBlocks >= self.processingHeaderObj.dataBlocksPerFile): | |
| 832 | return 0 |
|
867 | return 0 | |
| 833 |
|
868 | |||
| 834 | currentPointer = self.fp.tell() |
|
869 | currentPointer = self.fp.tell() | |
| 835 |
|
870 | |||
| 836 | neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize |
|
871 | neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize | |
| 837 |
|
872 | |||
| 838 | for nTries in range(self.nTries): |
|
873 | for nTries in range(self.nTries): | |
| 839 |
|
874 | |||
| 840 | self.fp.close() |
|
875 | self.fp.close() | |
| 841 | self.fp = open(self.filename, 'rb') |
|
876 | self.fp = open(self.filename, 'rb') | |
| 842 | self.fp.seek(currentPointer) |
|
877 | self.fp.seek(currentPointer) | |
| 843 |
|
878 | |||
| 844 | self.fileSize = os.path.getsize(self.filename) |
|
879 | self.fileSize = os.path.getsize(self.filename) | |
| 845 | currentSize = self.fileSize - currentPointer |
|
880 | currentSize = self.fileSize - currentPointer | |
| 846 |
|
881 | |||
| 847 | if (currentSize >= neededSize): |
|
882 | if (currentSize >= neededSize): | |
| 848 | self.basicHeaderObj.read(self.fp) |
|
883 | self.basicHeaderObj.read(self.fp) | |
| 849 | return 1 |
|
884 | return 1 | |
| 850 |
|
885 | |||
| 851 | if self.fileSize == self.fileSizeByHeader: |
|
886 | if self.fileSize == self.fileSizeByHeader: | |
| 852 | # self.flagEoF = True |
|
887 | # self.flagEoF = True | |
| 853 | return 0 |
|
888 | return 0 | |
| 854 |
|
889 | |||
| 855 | print("[Reading] Waiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries + 1)) |
|
890 | print("[Reading] Waiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries + 1)) | |
|
|
891 | #print(self.filename) | |||
| 856 | time.sleep(self.delay) |
|
892 | time.sleep(self.delay) | |
| 857 |
|
893 | |||
| 858 | return 0 |
|
894 | return 0 | |
| 859 |
|
895 | |||
| 860 | def __setNewBlock(self): |
|
896 | def __setNewBlock(self): | |
| 861 |
|
897 | |||
| 862 | if self.fp == None: |
|
898 | if self.fp == None: | |
| 863 |
return 0 |
|
899 | return 0 | |
| 864 |
|
900 | |||
| 865 |
if self.flagIsNewFile: |
|
901 | if self.flagIsNewFile: | |
| 866 | self.lastUTTime = self.basicHeaderObj.utc |
|
902 | self.lastUTTime = self.basicHeaderObj.utc | |
| 867 | return 1 |
|
903 | return 1 | |
| 868 |
|
904 | |||
| 869 | if self.realtime: |
|
905 | if self.realtime: | |
| 870 | self.flagDiscontinuousBlock = 1 |
|
906 | self.flagDiscontinuousBlock = 1 | |
| 871 | if not(self.setNextFile()): |
|
907 | if not(self.setNextFile()): | |
| 872 | return 0 |
|
908 | return 0 | |
| 873 | else: |
|
909 | else: | |
| 874 | return 1 |
|
910 | return 1 | |
| 875 |
|
911 | |||
| 876 | currentSize = self.fileSize - self.fp.tell() |
|
912 | currentSize = self.fileSize - self.fp.tell() | |
| 877 | neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize |
|
913 | neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize | |
| 878 |
|
914 | |||
| 879 | if (currentSize >= neededSize): |
|
915 | if (currentSize >= neededSize): | |
| 880 | self.basicHeaderObj.read(self.fp) |
|
916 | self.basicHeaderObj.read(self.fp) | |
| 881 | self.lastUTTime = self.basicHeaderObj.utc |
|
917 | self.lastUTTime = self.basicHeaderObj.utc | |
| 882 | return 1 |
|
918 | return 1 | |
| 883 |
|
919 | |||
| 884 | if self.__waitNewBlock(): |
|
920 | if self.__waitNewBlock(): | |
| 885 | self.lastUTTime = self.basicHeaderObj.utc |
|
921 | self.lastUTTime = self.basicHeaderObj.utc | |
| 886 | return 1 |
|
922 | return 1 | |
| 887 |
|
923 | |||
| 888 | if not(self.setNextFile()): |
|
924 | if not(self.setNextFile()): | |
| 889 | return 0 |
|
925 | return 0 | |
| 890 |
|
926 | |||
| 891 | deltaTime = self.basicHeaderObj.utc - self.lastUTTime |
|
927 | deltaTime = self.basicHeaderObj.utc - self.lastUTTime | |
| 892 | self.lastUTTime = self.basicHeaderObj.utc |
|
928 | self.lastUTTime = self.basicHeaderObj.utc | |
| 893 |
|
929 | |||
| 894 | self.flagDiscontinuousBlock = 0 |
|
930 | self.flagDiscontinuousBlock = 0 | |
| 895 |
|
931 | |||
| 896 | if deltaTime > self.maxTimeStep: |
|
932 | if deltaTime > self.maxTimeStep: | |
| 897 | self.flagDiscontinuousBlock = 1 |
|
933 | self.flagDiscontinuousBlock = 1 | |
| 898 |
|
934 | |||
| 899 | return 1 |
|
935 | return 1 | |
| 900 |
|
936 | |||
| 901 | def readNextBlock(self): |
|
937 | def readNextBlock(self): | |
| 902 |
|
938 | |||
| 903 | while True: |
|
939 | while True: | |
| 904 | if not(self.__setNewBlock()): |
|
940 | if not(self.__setNewBlock()): | |
| 905 | continue |
|
941 | continue | |
| 906 |
|
942 | |||
| 907 | if not(self.readBlock()): |
|
943 | if not(self.readBlock()): | |
| 908 | return 0 |
|
944 | return 0 | |
| 909 |
|
945 | |||
| 910 | self.getBasicHeader() |
|
946 | self.getBasicHeader() | |
| 911 |
|
947 | |||
| 912 | if not self.isDateTimeInRange(self.dataOut.datatime, self.startDate, self.endDate, self.startTime, self.endTime): |
|
948 | if not self.isDateTimeInRange(self.dataOut.datatime, self.startDate, self.endDate, self.startTime, self.endTime): | |
| 913 | print("[Reading] Block No. %d/%d -> %s [Skipping]" % (self.nReadBlocks, |
|
949 | print("[Reading] Block No. %d/%d -> %s [Skipping]" % (self.nReadBlocks, | |
| 914 | self.processingHeaderObj.dataBlocksPerFile, |
|
950 | self.processingHeaderObj.dataBlocksPerFile, | |
| 915 | self.dataOut.datatime.ctime())) |
|
951 | self.dataOut.datatime.ctime())) | |
| 916 | continue |
|
952 | continue | |
| 917 |
|
953 | |||
| 918 | break |
|
954 | break | |
| 919 |
|
955 | |||
| 920 | if self.verbose: |
|
956 | if self.verbose: | |
| 921 | print("[Reading] Block No. %d/%d -> %s" % (self.nReadBlocks, |
|
957 | print("[Reading] Block No. %d/%d -> %s" % (self.nReadBlocks, | |
| 922 | self.processingHeaderObj.dataBlocksPerFile, |
|
958 | self.processingHeaderObj.dataBlocksPerFile, | |
| 923 | self.dataOut.datatime.ctime())) |
|
959 | self.dataOut.datatime.ctime())) | |
|
|
960 | #################DP################# | |||
|
|
961 | self.dataOut.TimeBlockDate=self.dataOut.datatime.ctime() | |||
|
|
962 | self.dataOut.TimeBlockSeconds=time.mktime(time.strptime(self.dataOut.datatime.ctime())) | |||
|
|
963 | #################DP################# | |||
| 924 | return 1 |
|
964 | return 1 | |
| 925 |
|
965 | |||
| 926 | def readFirstHeader(self): |
|
966 | def readFirstHeader(self): | |
| 927 |
|
967 | |||
| 928 | self.basicHeaderObj.read(self.fp) |
|
968 | self.basicHeaderObj.read(self.fp) | |
| 929 | self.systemHeaderObj.read(self.fp) |
|
969 | self.systemHeaderObj.read(self.fp) | |
| 930 | self.radarControllerHeaderObj.read(self.fp) |
|
970 | self.radarControllerHeaderObj.read(self.fp) | |
| 931 | self.processingHeaderObj.read(self.fp) |
|
971 | self.processingHeaderObj.read(self.fp) | |
| 932 | self.firstHeaderSize = self.basicHeaderObj.size |
|
972 | self.firstHeaderSize = self.basicHeaderObj.size | |
| 933 |
|
973 | |||
| 934 | datatype = int(numpy.log2((self.processingHeaderObj.processFlags & |
|
974 | datatype = int(numpy.log2((self.processingHeaderObj.processFlags & | |
| 935 | PROCFLAG.DATATYPE_MASK)) - numpy.log2(PROCFLAG.DATATYPE_CHAR)) |
|
975 | PROCFLAG.DATATYPE_MASK)) - numpy.log2(PROCFLAG.DATATYPE_CHAR)) | |
| 936 | if datatype == 0: |
|
976 | if datatype == 0: | |
| 937 | datatype_str = numpy.dtype([('real', '<i1'), ('imag', '<i1')]) |
|
977 | datatype_str = numpy.dtype([('real', '<i1'), ('imag', '<i1')]) | |
| 938 | elif datatype == 1: |
|
978 | elif datatype == 1: | |
| 939 | datatype_str = numpy.dtype([('real', '<i2'), ('imag', '<i2')]) |
|
979 | datatype_str = numpy.dtype([('real', '<i2'), ('imag', '<i2')]) | |
| 940 | elif datatype == 2: |
|
980 | elif datatype == 2: | |
| 941 | datatype_str = numpy.dtype([('real', '<i4'), ('imag', '<i4')]) |
|
981 | datatype_str = numpy.dtype([('real', '<i4'), ('imag', '<i4')]) | |
| 942 | elif datatype == 3: |
|
982 | elif datatype == 3: | |
| 943 | datatype_str = numpy.dtype([('real', '<i8'), ('imag', '<i8')]) |
|
983 | datatype_str = numpy.dtype([('real', '<i8'), ('imag', '<i8')]) | |
| 944 | elif datatype == 4: |
|
984 | elif datatype == 4: | |
| 945 | datatype_str = numpy.dtype([('real', '<f4'), ('imag', '<f4')]) |
|
985 | datatype_str = numpy.dtype([('real', '<f4'), ('imag', '<f4')]) | |
| 946 | elif datatype == 5: |
|
986 | elif datatype == 5: | |
| 947 | datatype_str = numpy.dtype([('real', '<f8'), ('imag', '<f8')]) |
|
987 | datatype_str = numpy.dtype([('real', '<f8'), ('imag', '<f8')]) | |
| 948 | else: |
|
988 | else: | |
| 949 | raise ValueError('Data type was not defined') |
|
989 | raise ValueError('Data type was not defined') | |
| 950 |
|
990 | |||
| 951 | self.dtype = datatype_str |
|
991 | self.dtype = datatype_str | |
| 952 | #self.ippSeconds = 2 * 1000 * self.radarControllerHeaderObj.ipp / self.c |
|
992 | #self.ippSeconds = 2 * 1000 * self.radarControllerHeaderObj.ipp / self.c | |
| 953 | self.fileSizeByHeader = self.processingHeaderObj.dataBlocksPerFile * self.processingHeaderObj.blockSize + \ |
|
993 | self.fileSizeByHeader = self.processingHeaderObj.dataBlocksPerFile * self.processingHeaderObj.blockSize + \ | |
| 954 | self.firstHeaderSize + self.basicHeaderSize * \ |
|
994 | self.firstHeaderSize + self.basicHeaderSize * \ | |
| 955 | (self.processingHeaderObj.dataBlocksPerFile - 1) |
|
995 | (self.processingHeaderObj.dataBlocksPerFile - 1) | |
| 956 | # self.dataOut.channelList = numpy.arange(self.systemHeaderObj.numChannels) |
|
996 | # self.dataOut.channelList = numpy.arange(self.systemHeaderObj.numChannels) | |
| 957 | # self.dataOut.channelIndexList = numpy.arange(self.systemHeaderObj.numChannels) |
|
997 | # self.dataOut.channelIndexList = numpy.arange(self.systemHeaderObj.numChannels) | |
| 958 | self.getBlockDimension() |
|
998 | self.getBlockDimension() | |
| 959 |
|
999 | |||
| 960 | def verifyFile(self, filename): |
|
1000 | def verifyFile(self, filename): | |
| 961 |
|
1001 | |||
| 962 | flag = True |
|
1002 | flag = True | |
| 963 |
|
1003 | |||
| 964 | try: |
|
1004 | try: | |
| 965 | fp = open(filename, 'rb') |
|
1005 | fp = open(filename, 'rb') | |
| 966 | except IOError: |
|
1006 | except IOError: | |
| 967 | log.error("File {} can't be opened".format(filename), self.name) |
|
1007 | log.error("File {} can't be opened".format(filename), self.name) | |
| 968 | return False |
|
1008 | return False | |
| 969 |
|
1009 | |||
| 970 | if self.online and self.waitDataBlock(0): |
|
1010 | if self.online and self.waitDataBlock(0): | |
| 971 | pass |
|
1011 | pass | |
| 972 |
|
1012 | |||
| 973 | basicHeaderObj = BasicHeader(LOCALTIME) |
|
1013 | basicHeaderObj = BasicHeader(LOCALTIME) | |
| 974 | systemHeaderObj = SystemHeader() |
|
1014 | systemHeaderObj = SystemHeader() | |
| 975 | radarControllerHeaderObj = RadarControllerHeader() |
|
1015 | radarControllerHeaderObj = RadarControllerHeader() | |
| 976 | processingHeaderObj = ProcessingHeader() |
|
1016 | processingHeaderObj = ProcessingHeader() | |
| 977 |
|
1017 | |||
| 978 | if not(basicHeaderObj.read(fp)): |
|
1018 | if not(basicHeaderObj.read(fp)): | |
| 979 | flag = False |
|
1019 | flag = False | |
| 980 | if not(systemHeaderObj.read(fp)): |
|
1020 | if not(systemHeaderObj.read(fp)): | |
| 981 | flag = False |
|
1021 | flag = False | |
| 982 | if not(radarControllerHeaderObj.read(fp)): |
|
1022 | if not(radarControllerHeaderObj.read(fp)): | |
| 983 | flag = False |
|
1023 | flag = False | |
| 984 | if not(processingHeaderObj.read(fp)): |
|
1024 | if not(processingHeaderObj.read(fp)): | |
| 985 | flag = False |
|
1025 | flag = False | |
| 986 | if not self.online: |
|
1026 | if not self.online: | |
| 987 | dt1 = basicHeaderObj.datatime |
|
1027 | dt1 = basicHeaderObj.datatime | |
| 988 | pos = self.fileSize-processingHeaderObj.blockSize-24 |
|
1028 | pos = self.fileSize-processingHeaderObj.blockSize-24 | |
| 989 | if pos<0: |
|
1029 | if pos<0: | |
| 990 | flag = False |
|
1030 | flag = False | |
| 991 | log.error('Invalid size for file: {}'.format(self.filename), self.name) |
|
1031 | log.error('Invalid size for file: {}'.format(self.filename), self.name) | |
| 992 | else: |
|
1032 | else: | |
| 993 | fp.seek(pos) |
|
1033 | fp.seek(pos) | |
| 994 | if not(basicHeaderObj.read(fp)): |
|
1034 | if not(basicHeaderObj.read(fp)): | |
| 995 | flag = False |
|
1035 | flag = False | |
| 996 | dt2 = basicHeaderObj.datatime |
|
1036 | dt2 = basicHeaderObj.datatime | |
| 997 | if not self.isDateTimeInRange(dt1, self.startDate, self.endDate, self.startTime, self.endTime) and not \ |
|
1037 | if not self.isDateTimeInRange(dt1, self.startDate, self.endDate, self.startTime, self.endTime) and not \ | |
| 998 | self.isDateTimeInRange(dt2, self.startDate, self.endDate, self.startTime, self.endTime): |
|
1038 | self.isDateTimeInRange(dt2, self.startDate, self.endDate, self.startTime, self.endTime): | |
| 999 |
flag = False |
|
1039 | flag = False | |
| 1000 |
|
1040 | |||
| 1001 | fp.close() |
|
1041 | fp.close() | |
| 1002 | return flag |
|
1042 | return flag | |
| 1003 |
|
1043 | |||
| 1004 | def findDatafiles(self, path, startDate=None, endDate=None, expLabel='', ext='.r', walk=True, include_path=False): |
|
1044 | def findDatafiles(self, path, startDate=None, endDate=None, expLabel='', ext='.r', walk=True, include_path=False): | |
| 1005 |
|
1045 | |||
| 1006 | path_empty = True |
|
1046 | path_empty = True | |
| 1007 |
|
1047 | |||
| 1008 | dateList = [] |
|
1048 | dateList = [] | |
| 1009 | pathList = [] |
|
1049 | pathList = [] | |
| 1010 |
|
1050 | |||
| 1011 | multi_path = path.split(',') |
|
1051 | multi_path = path.split(',') | |
| 1012 |
|
1052 | |||
| 1013 | if not walk: |
|
1053 | if not walk: | |
| 1014 |
|
1054 | |||
| 1015 | for single_path in multi_path: |
|
1055 | for single_path in multi_path: | |
| 1016 |
|
1056 | |||
| 1017 | if not os.path.isdir(single_path): |
|
1057 | if not os.path.isdir(single_path): | |
| 1018 | continue |
|
1058 | continue | |
| 1019 |
|
1059 | |||
| 1020 | fileList = glob.glob1(single_path, "*" + ext) |
|
1060 | fileList = glob.glob1(single_path, "*" + ext) | |
| 1021 |
|
1061 | |||
| 1022 | if not fileList: |
|
1062 | if not fileList: | |
| 1023 | continue |
|
1063 | continue | |
| 1024 |
|
1064 | |||
| 1025 | path_empty = False |
|
1065 | path_empty = False | |
| 1026 |
|
1066 | |||
| 1027 | fileList.sort() |
|
1067 | fileList.sort() | |
| 1028 |
|
1068 | |||
| 1029 | for thisFile in fileList: |
|
1069 | for thisFile in fileList: | |
| 1030 |
|
1070 | |||
| 1031 | if not os.path.isfile(os.path.join(single_path, thisFile)): |
|
1071 | if not os.path.isfile(os.path.join(single_path, thisFile)): | |
| 1032 | continue |
|
1072 | continue | |
| 1033 |
|
1073 | |||
| 1034 | if not isRadarFile(thisFile): |
|
1074 | if not isRadarFile(thisFile): | |
| 1035 | continue |
|
1075 | continue | |
| 1036 |
|
1076 | |||
| 1037 | if not isFileInDateRange(thisFile, startDate, endDate): |
|
1077 | if not isFileInDateRange(thisFile, startDate, endDate): | |
| 1038 | continue |
|
1078 | continue | |
| 1039 |
|
1079 | |||
| 1040 | thisDate = getDateFromRadarFile(thisFile) |
|
1080 | thisDate = getDateFromRadarFile(thisFile) | |
| 1041 |
|
1081 | |||
| 1042 | if thisDate in dateList or single_path in pathList: |
|
1082 | if thisDate in dateList or single_path in pathList: | |
| 1043 | continue |
|
1083 | continue | |
| 1044 |
|
1084 | |||
| 1045 | dateList.append(thisDate) |
|
1085 | dateList.append(thisDate) | |
| 1046 | pathList.append(single_path) |
|
1086 | pathList.append(single_path) | |
| 1047 |
|
1087 | |||
| 1048 | else: |
|
1088 | else: | |
| 1049 | for single_path in multi_path: |
|
1089 | for single_path in multi_path: | |
| 1050 |
|
1090 | |||
| 1051 | if not os.path.isdir(single_path): |
|
1091 | if not os.path.isdir(single_path): | |
| 1052 | continue |
|
1092 | continue | |
| 1053 |
|
1093 | |||
| 1054 | dirList = [] |
|
1094 | dirList = [] | |
| 1055 |
|
1095 | |||
| 1056 | for thisPath in os.listdir(single_path): |
|
1096 | for thisPath in os.listdir(single_path): | |
| 1057 |
|
1097 | |||
| 1058 | if not os.path.isdir(os.path.join(single_path, thisPath)): |
|
1098 | if not os.path.isdir(os.path.join(single_path, thisPath)): | |
| 1059 | continue |
|
1099 | continue | |
| 1060 |
|
1100 | |||
| 1061 | if not isRadarFolder(thisPath): |
|
1101 | if not isRadarFolder(thisPath): | |
| 1062 | continue |
|
1102 | continue | |
| 1063 |
|
1103 | |||
| 1064 | if not isFolderInDateRange(thisPath, startDate, endDate): |
|
1104 | if not isFolderInDateRange(thisPath, startDate, endDate): | |
| 1065 | continue |
|
1105 | continue | |
| 1066 |
|
1106 | |||
| 1067 | dirList.append(thisPath) |
|
1107 | dirList.append(thisPath) | |
| 1068 |
|
1108 | |||
| 1069 | if not dirList: |
|
1109 | if not dirList: | |
| 1070 | continue |
|
1110 | continue | |
| 1071 |
|
1111 | |||
| 1072 | dirList.sort() |
|
1112 | dirList.sort() | |
| 1073 |
|
1113 | |||
| 1074 | for thisDir in dirList: |
|
1114 | for thisDir in dirList: | |
| 1075 |
|
1115 | |||
| 1076 | datapath = os.path.join(single_path, thisDir, expLabel) |
|
1116 | datapath = os.path.join(single_path, thisDir, expLabel) | |
| 1077 | fileList = glob.glob1(datapath, "*" + ext) |
|
1117 | fileList = glob.glob1(datapath, "*" + ext) | |
| 1078 |
|
1118 | |||
| 1079 | if not fileList: |
|
1119 | if not fileList: | |
| 1080 | continue |
|
1120 | continue | |
| 1081 |
|
1121 | |||
| 1082 | path_empty = False |
|
1122 | path_empty = False | |
| 1083 |
|
1123 | |||
| 1084 | thisDate = getDateFromRadarFolder(thisDir) |
|
1124 | thisDate = getDateFromRadarFolder(thisDir) | |
| 1085 |
|
1125 | |||
| 1086 | pathList.append(datapath) |
|
1126 | pathList.append(datapath) | |
| 1087 | dateList.append(thisDate) |
|
1127 | dateList.append(thisDate) | |
| 1088 |
|
1128 | |||
| 1089 | dateList.sort() |
|
1129 | dateList.sort() | |
| 1090 |
|
1130 | |||
| 1091 | if walk: |
|
1131 | if walk: | |
| 1092 | pattern_path = os.path.join(multi_path[0], "[dYYYYDDD]", expLabel) |
|
1132 | pattern_path = os.path.join(multi_path[0], "[dYYYYDDD]", expLabel) | |
| 1093 | else: |
|
1133 | else: | |
| 1094 | pattern_path = multi_path[0] |
|
1134 | pattern_path = multi_path[0] | |
| 1095 |
|
1135 | |||
| 1096 | if path_empty: |
|
1136 | if path_empty: | |
| 1097 | raise schainpy.admin.SchainError("[Reading] No *%s files in %s for %s to %s" % (ext, pattern_path, startDate, endDate)) |
|
1137 | raise schainpy.admin.SchainError("[Reading] No *%s files in %s for %s to %s" % (ext, pattern_path, startDate, endDate)) | |
| 1098 | else: |
|
1138 | else: | |
| 1099 | if not dateList: |
|
1139 | if not dateList: | |
| 1100 | raise schainpy.admin.SchainError("[Reading] Date range selected invalid [%s - %s]: No *%s files in %s)" % (startDate, endDate, ext, path)) |
|
1140 | raise schainpy.admin.SchainError("[Reading] Date range selected invalid [%s - %s]: No *%s files in %s)" % (startDate, endDate, ext, path)) | |
| 1101 |
|
1141 | |||
| 1102 | if include_path: |
|
1142 | if include_path: | |
| 1103 | return dateList, pathList |
|
1143 | return dateList, pathList | |
| 1104 |
|
1144 | |||
| 1105 | return dateList |
|
1145 | return dateList | |
| 1106 |
|
1146 | |||
| 1107 | def setup(self, **kwargs): |
|
1147 | def setup(self, **kwargs): | |
| 1108 |
|
1148 | |||
| 1109 | self.set_kwargs(**kwargs) |
|
1149 | self.set_kwargs(**kwargs) | |
| 1110 | if not self.ext.startswith('.'): |
|
1150 | if not self.ext.startswith('.'): | |
| 1111 | self.ext = '.{}'.format(self.ext) |
|
1151 | self.ext = '.{}'.format(self.ext) | |
| 1112 |
|
1152 | |||
| 1113 | if self.server is not None: |
|
1153 | if self.server is not None: | |
| 1114 | if 'tcp://' in self.server: |
|
1154 | if 'tcp://' in self.server: | |
| 1115 | address = server |
|
1155 | address = server | |
| 1116 | else: |
|
1156 | else: | |
| 1117 | address = 'ipc:///tmp/%s' % self.server |
|
1157 | address = 'ipc:///tmp/%s' % self.server | |
| 1118 | self.server = address |
|
1158 | self.server = address | |
| 1119 | self.context = zmq.Context() |
|
1159 | self.context = zmq.Context() | |
| 1120 | self.receiver = self.context.socket(zmq.PULL) |
|
1160 | self.receiver = self.context.socket(zmq.PULL) | |
| 1121 | self.receiver.connect(self.server) |
|
1161 | self.receiver.connect(self.server) | |
| 1122 | time.sleep(0.5) |
|
1162 | time.sleep(0.5) | |
| 1123 | print('[Starting] ReceiverData from {}'.format(self.server)) |
|
1163 | print('[Starting] ReceiverData from {}'.format(self.server)) | |
| 1124 | else: |
|
1164 | else: | |
| 1125 | self.server = None |
|
1165 | self.server = None | |
| 1126 | if self.path == None: |
|
1166 | if self.path == None: | |
| 1127 | raise ValueError("[Reading] The path is not valid") |
|
1167 | raise ValueError("[Reading] The path is not valid") | |
| 1128 |
|
1168 | |||
| 1129 | if self.online: |
|
1169 | if self.online: | |
| 1130 | log.log("[Reading] Searching files in online mode...", self.name) |
|
1170 | log.log("[Reading] Searching files in online mode...", self.name) | |
| 1131 |
|
1171 | |||
| 1132 | for nTries in range(self.nTries): |
|
1172 | for nTries in range(self.nTries): | |
| 1133 | fullpath = self.searchFilesOnLine(self.path, self.startDate, |
|
1173 | fullpath = self.searchFilesOnLine(self.path, self.startDate, | |
| 1134 |
self.endDate, self.expLabel, self.ext, self.walk, |
|
1174 | self.endDate, self.expLabel, self.ext, self.walk, | |
| 1135 | self.filefmt, self.folderfmt) |
|
1175 | self.filefmt, self.folderfmt) | |
| 1136 |
|
1176 | |||
| 1137 | try: |
|
1177 | try: | |
| 1138 | fullpath = next(fullpath) |
|
1178 | fullpath = next(fullpath) | |
| 1139 | except: |
|
1179 | except: | |
| 1140 | fullpath = None |
|
1180 | fullpath = None | |
| 1141 |
|
1181 | |||
| 1142 | if fullpath: |
|
1182 | if fullpath: | |
| 1143 | break |
|
1183 | break | |
| 1144 |
|
1184 | |||
| 1145 | log.warning( |
|
1185 | log.warning( | |
| 1146 | 'Waiting {} sec for a valid file in {}: try {} ...'.format( |
|
1186 | 'Waiting {} sec for a valid file in {}: try {} ...'.format( | |
| 1147 |
self.delay, self.path, nTries + 1), |
|
1187 | self.delay, self.path, nTries + 1), | |
| 1148 | self.name) |
|
1188 | self.name) | |
| 1149 | time.sleep(self.delay) |
|
1189 | time.sleep(self.delay) | |
| 1150 |
|
1190 | |||
| 1151 | if not(fullpath): |
|
1191 | if not(fullpath): | |
| 1152 | raise schainpy.admin.SchainError( |
|
1192 | raise schainpy.admin.SchainError( | |
| 1153 |
'There isn\'t any valid file in {}'.format(self.path)) |
|
1193 | 'There isn\'t any valid file in {}'.format(self.path)) | |
| 1154 |
|
1194 | |||
| 1155 | pathname, filename = os.path.split(fullpath) |
|
1195 | pathname, filename = os.path.split(fullpath) | |
| 1156 | self.year = int(filename[1:5]) |
|
1196 | self.year = int(filename[1:5]) | |
| 1157 | self.doy = int(filename[5:8]) |
|
1197 | self.doy = int(filename[5:8]) | |
| 1158 |
self.set = int(filename[8:11]) - 1 |
|
1198 | self.set = int(filename[8:11]) - 1 | |
| 1159 | else: |
|
1199 | else: | |
| 1160 | log.log("Searching files in {}".format(self.path), self.name) |
|
1200 | log.log("Searching files in {}".format(self.path), self.name) | |
| 1161 |
self.filenameList = self.searchFilesOffLine(self.path, self.startDate, |
|
1201 | self.filenameList = self.searchFilesOffLine(self.path, self.startDate, | |
| 1162 | self.endDate, self.expLabel, self.ext, self.walk, self.filefmt, self.folderfmt) |
|
1202 | self.endDate, self.expLabel, self.ext, self.walk, self.filefmt, self.folderfmt) | |
| 1163 |
|
1203 | |||
| 1164 | self.setNextFile() |
|
1204 | self.setNextFile() | |
| 1165 |
|
1205 | |||
| 1166 | return |
|
1206 | return | |
| 1167 |
|
1207 | |||
| 1168 | def getBasicHeader(self): |
|
1208 | def getBasicHeader(self): | |
| 1169 |
|
1209 | |||
| 1170 | self.dataOut.utctime = self.basicHeaderObj.utc + self.basicHeaderObj.miliSecond / \ |
|
1210 | self.dataOut.utctime = self.basicHeaderObj.utc + self.basicHeaderObj.miliSecond / \ | |
| 1171 | 1000. + self.profileIndex * self.radarControllerHeaderObj.ippSeconds |
|
1211 | 1000. + self.profileIndex * self.radarControllerHeaderObj.ippSeconds | |
| 1172 |
|
1212 | |||
| 1173 | self.dataOut.flagDiscontinuousBlock = self.flagDiscontinuousBlock |
|
1213 | self.dataOut.flagDiscontinuousBlock = self.flagDiscontinuousBlock | |
| 1174 |
|
1214 | |||
| 1175 | self.dataOut.timeZone = self.basicHeaderObj.timeZone |
|
1215 | self.dataOut.timeZone = self.basicHeaderObj.timeZone | |
| 1176 |
|
1216 | |||
| 1177 | self.dataOut.dstFlag = self.basicHeaderObj.dstFlag |
|
1217 | self.dataOut.dstFlag = self.basicHeaderObj.dstFlag | |
| 1178 |
|
1218 | |||
| 1179 | self.dataOut.errorCount = self.basicHeaderObj.errorCount |
|
1219 | self.dataOut.errorCount = self.basicHeaderObj.errorCount | |
| 1180 |
|
1220 | |||
| 1181 | self.dataOut.useLocalTime = self.basicHeaderObj.useLocalTime |
|
1221 | self.dataOut.useLocalTime = self.basicHeaderObj.useLocalTime | |
| 1182 |
|
1222 | |||
| 1183 | self.dataOut.ippSeconds = self.radarControllerHeaderObj.ippSeconds / self.nTxs |
|
1223 | self.dataOut.ippSeconds = self.radarControllerHeaderObj.ippSeconds / self.nTxs | |
| 1184 |
|
1224 | |||
| 1185 | def getFirstHeader(self): |
|
1225 | def getFirstHeader(self): | |
| 1186 |
|
1226 | |||
| 1187 | raise NotImplementedError |
|
1227 | raise NotImplementedError | |
| 1188 |
|
1228 | |||
| 1189 | def getData(self): |
|
1229 | def getData(self): | |
| 1190 |
|
1230 | |||
| 1191 | raise NotImplementedError |
|
1231 | raise NotImplementedError | |
| 1192 |
|
1232 | |||
| 1193 | def hasNotDataInBuffer(self): |
|
1233 | def hasNotDataInBuffer(self): | |
| 1194 |
|
1234 | |||
| 1195 | raise NotImplementedError |
|
1235 | raise NotImplementedError | |
| 1196 |
|
1236 | |||
| 1197 | def readBlock(self): |
|
1237 | def readBlock(self): | |
| 1198 |
|
1238 | |||
| 1199 | raise NotImplementedError |
|
1239 | raise NotImplementedError | |
| 1200 |
|
1240 | |||
| 1201 | def isEndProcess(self): |
|
1241 | def isEndProcess(self): | |
| 1202 |
|
1242 | |||
| 1203 | return self.flagNoMoreFiles |
|
1243 | return self.flagNoMoreFiles | |
| 1204 |
|
1244 | |||
| 1205 | def printReadBlocks(self): |
|
1245 | def printReadBlocks(self): | |
| 1206 |
|
1246 | |||
| 1207 | print("[Reading] Number of read blocks per file %04d" % self.nReadBlocks) |
|
1247 | print("[Reading] Number of read blocks per file %04d" % self.nReadBlocks) | |
| 1208 |
|
1248 | |||
| 1209 | def printTotalBlocks(self): |
|
1249 | def printTotalBlocks(self): | |
| 1210 |
|
1250 | |||
| 1211 | print("[Reading] Number of read blocks %04d" % self.nTotalBlocks) |
|
1251 | print("[Reading] Number of read blocks %04d" % self.nTotalBlocks) | |
| 1212 |
|
1252 | |||
| 1213 | def run(self, **kwargs): |
|
1253 | def run(self, **kwargs): | |
| 1214 | """ |
|
1254 | """ | |
| 1215 |
|
1255 | |||
| 1216 | Arguments: |
|
1256 | Arguments: | |
| 1217 |
path : |
|
1257 | path : | |
| 1218 |
startDate : |
|
1258 | startDate : | |
| 1219 | endDate : |
|
1259 | endDate : | |
| 1220 | startTime : |
|
1260 | startTime : | |
| 1221 | endTime : |
|
1261 | endTime : | |
| 1222 | set : |
|
1262 | set : | |
| 1223 | expLabel : |
|
1263 | expLabel : | |
| 1224 | ext : |
|
1264 | ext : | |
| 1225 | online : |
|
1265 | online : | |
| 1226 | delay : |
|
1266 | delay : | |
| 1227 | walk : |
|
1267 | walk : | |
| 1228 | getblock : |
|
1268 | getblock : | |
| 1229 | nTxs : |
|
1269 | nTxs : | |
| 1230 | realtime : |
|
1270 | realtime : | |
| 1231 | blocksize : |
|
1271 | blocksize : | |
| 1232 | blocktime : |
|
1272 | blocktime : | |
| 1233 | skip : |
|
1273 | skip : | |
| 1234 | cursor : |
|
1274 | cursor : | |
| 1235 | warnings : |
|
1275 | warnings : | |
| 1236 | server : |
|
1276 | server : | |
| 1237 | verbose : |
|
1277 | verbose : | |
| 1238 | format : |
|
1278 | format : | |
| 1239 | oneDDict : |
|
1279 | oneDDict : | |
| 1240 | twoDDict : |
|
1280 | twoDDict : | |
| 1241 | independentParam : |
|
1281 | independentParam : | |
| 1242 | """ |
|
1282 | """ | |
| 1243 |
|
1283 | |||
| 1244 | if not(self.isConfig): |
|
1284 | if not(self.isConfig): | |
| 1245 | self.setup(**kwargs) |
|
1285 | self.setup(**kwargs) | |
| 1246 | self.isConfig = True |
|
1286 | self.isConfig = True | |
| 1247 | if self.server is None: |
|
1287 | if self.server is None: | |
| 1248 | self.getData() |
|
1288 | self.getData() | |
| 1249 | else: |
|
1289 | else: | |
| 1250 | self.getFromServer() |
|
1290 | self.getFromServer() | |
| 1251 |
|
1291 | |||
| 1252 |
|
1292 | |||
| 1253 | class JRODataWriter(Reader): |
|
1293 | class JRODataWriter(Reader): | |
| 1254 |
|
1294 | |||
| 1255 | """ |
|
1295 | """ | |
| 1256 | Esta clase permite escribir datos a archivos procesados (.r o ,pdata). La escritura |
|
1296 | Esta clase permite escribir datos a archivos procesados (.r o ,pdata). La escritura | |
| 1257 | de los datos siempre se realiza por bloques. |
|
1297 | de los datos siempre se realiza por bloques. | |
| 1258 | """ |
|
1298 | """ | |
| 1259 |
|
1299 | |||
| 1260 | setFile = None |
|
1300 | setFile = None | |
| 1261 | profilesPerBlock = None |
|
1301 | profilesPerBlock = None | |
| 1262 | blocksPerFile = None |
|
1302 | blocksPerFile = None | |
| 1263 | nWriteBlocks = 0 |
|
1303 | nWriteBlocks = 0 | |
| 1264 | fileDate = None |
|
1304 | fileDate = None | |
| 1265 |
|
1305 | |||
| 1266 | def __init__(self, dataOut=None): |
|
1306 | def __init__(self, dataOut=None): | |
| 1267 | raise NotImplementedError |
|
1307 | raise NotImplementedError | |
| 1268 |
|
1308 | |||
| 1269 | def hasAllDataInBuffer(self): |
|
1309 | def hasAllDataInBuffer(self): | |
| 1270 | raise NotImplementedError |
|
1310 | raise NotImplementedError | |
| 1271 |
|
1311 | |||
| 1272 | def setBlockDimension(self): |
|
1312 | def setBlockDimension(self): | |
| 1273 | raise NotImplementedError |
|
1313 | raise NotImplementedError | |
| 1274 |
|
1314 | |||
| 1275 | def writeBlock(self): |
|
1315 | def writeBlock(self): | |
| 1276 | raise NotImplementedError |
|
1316 | raise NotImplementedError | |
| 1277 |
|
1317 | |||
| 1278 | def putData(self): |
|
1318 | def putData(self): | |
| 1279 | raise NotImplementedError |
|
1319 | raise NotImplementedError | |
| 1280 |
|
1320 | |||
| 1281 | def getDtypeWidth(self): |
|
1321 | def getDtypeWidth(self): | |
| 1282 |
|
1322 | |||
| 1283 | dtype_index = get_dtype_index(self.dtype) |
|
1323 | dtype_index = get_dtype_index(self.dtype) | |
| 1284 | dtype_width = get_dtype_width(dtype_index) |
|
1324 | dtype_width = get_dtype_width(dtype_index) | |
| 1285 |
|
1325 | |||
| 1286 | return dtype_width |
|
1326 | return dtype_width | |
| 1287 |
|
1327 | |||
| 1288 | def getProcessFlags(self): |
|
1328 | def getProcessFlags(self): | |
| 1289 |
|
1329 | |||
| 1290 | processFlags = 0 |
|
1330 | processFlags = 0 | |
| 1291 |
|
1331 | |||
| 1292 | dtype_index = get_dtype_index(self.dtype) |
|
1332 | dtype_index = get_dtype_index(self.dtype) | |
| 1293 | procflag_dtype = get_procflag_dtype(dtype_index) |
|
1333 | procflag_dtype = get_procflag_dtype(dtype_index) | |
| 1294 |
|
1334 | |||
| 1295 | processFlags += procflag_dtype |
|
1335 | processFlags += procflag_dtype | |
| 1296 |
|
1336 | |||
| 1297 | if self.dataOut.flagDecodeData: |
|
1337 | if self.dataOut.flagDecodeData: | |
| 1298 | processFlags += PROCFLAG.DECODE_DATA |
|
1338 | processFlags += PROCFLAG.DECODE_DATA | |
| 1299 |
|
1339 | |||
| 1300 | if self.dataOut.flagDeflipData: |
|
1340 | if self.dataOut.flagDeflipData: | |
| 1301 | processFlags += PROCFLAG.DEFLIP_DATA |
|
1341 | processFlags += PROCFLAG.DEFLIP_DATA | |
| 1302 |
|
1342 | |||
| 1303 | if self.dataOut.code is not None: |
|
1343 | if self.dataOut.code is not None: | |
| 1304 | processFlags += PROCFLAG.DEFINE_PROCESS_CODE |
|
1344 | processFlags += PROCFLAG.DEFINE_PROCESS_CODE | |
| 1305 |
|
1345 | |||
| 1306 | if self.dataOut.nCohInt > 1: |
|
1346 | if self.dataOut.nCohInt > 1: | |
| 1307 | processFlags += PROCFLAG.COHERENT_INTEGRATION |
|
1347 | processFlags += PROCFLAG.COHERENT_INTEGRATION | |
| 1308 |
|
1348 | |||
| 1309 | if self.dataOut.type == "Spectra": |
|
1349 | if self.dataOut.type == "Spectra": | |
| 1310 | if self.dataOut.nIncohInt > 1: |
|
1350 | if self.dataOut.nIncohInt > 1: | |
| 1311 | processFlags += PROCFLAG.INCOHERENT_INTEGRATION |
|
1351 | processFlags += PROCFLAG.INCOHERENT_INTEGRATION | |
| 1312 |
|
1352 | |||
| 1313 | if self.dataOut.data_dc is not None: |
|
1353 | if self.dataOut.data_dc is not None: | |
| 1314 | processFlags += PROCFLAG.SAVE_CHANNELS_DC |
|
1354 | processFlags += PROCFLAG.SAVE_CHANNELS_DC | |
| 1315 |
|
1355 | |||
| 1316 | if self.dataOut.flagShiftFFT: |
|
1356 | if self.dataOut.flagShiftFFT: | |
| 1317 | processFlags += PROCFLAG.SHIFT_FFT_DATA |
|
1357 | processFlags += PROCFLAG.SHIFT_FFT_DATA | |
| 1318 |
|
1358 | |||
| 1319 | return processFlags |
|
1359 | return processFlags | |
| 1320 |
|
1360 | |||
| 1321 | def setBasicHeader(self): |
|
1361 | def setBasicHeader(self): | |
| 1322 |
|
1362 | |||
| 1323 | self.basicHeaderObj.size = self.basicHeaderSize # bytes |
|
1363 | self.basicHeaderObj.size = self.basicHeaderSize # bytes | |
| 1324 | self.basicHeaderObj.version = self.versionFile |
|
1364 | self.basicHeaderObj.version = self.versionFile | |
| 1325 |
self.basicHeaderObj.dataBlock = self.nTotalBlocks |
|
1365 | self.basicHeaderObj.dataBlock = self.nTotalBlocks | |
| 1326 | utc = numpy.floor(self.dataOut.utctime) |
|
1366 | utc = numpy.floor(self.dataOut.utctime) | |
| 1327 |
milisecond = (self.dataOut.utctime - utc) * 1000.0 |
|
1367 | milisecond = (self.dataOut.utctime - utc) * 1000.0 | |
| 1328 | self.basicHeaderObj.utc = utc |
|
1368 | self.basicHeaderObj.utc = utc | |
| 1329 | self.basicHeaderObj.miliSecond = milisecond |
|
1369 | self.basicHeaderObj.miliSecond = milisecond | |
| 1330 | self.basicHeaderObj.timeZone = self.dataOut.timeZone |
|
1370 | self.basicHeaderObj.timeZone = self.dataOut.timeZone | |
| 1331 | self.basicHeaderObj.dstFlag = self.dataOut.dstFlag |
|
1371 | self.basicHeaderObj.dstFlag = self.dataOut.dstFlag | |
| 1332 | self.basicHeaderObj.errorCount = self.dataOut.errorCount |
|
1372 | self.basicHeaderObj.errorCount = self.dataOut.errorCount | |
| 1333 |
|
1373 | |||
| 1334 | def setFirstHeader(self): |
|
1374 | def setFirstHeader(self): | |
| 1335 | """ |
|
1375 | """ | |
| 1336 | Obtiene una copia del First Header |
|
1376 | Obtiene una copia del First Header | |
| 1337 |
|
1377 | |||
| 1338 | Affected: |
|
1378 | Affected: | |
| 1339 |
|
1379 | |||
| 1340 | self.basicHeaderObj |
|
1380 | self.basicHeaderObj | |
| 1341 | self.systemHeaderObj |
|
1381 | self.systemHeaderObj | |
| 1342 | self.radarControllerHeaderObj |
|
1382 | self.radarControllerHeaderObj | |
| 1343 | self.processingHeaderObj self. |
|
1383 | self.processingHeaderObj self. | |
| 1344 |
|
1384 | |||
| 1345 | Return: |
|
1385 | Return: | |
| 1346 | None |
|
1386 | None | |
| 1347 | """ |
|
1387 | """ | |
| 1348 |
|
1388 | |||
| 1349 | raise NotImplementedError |
|
1389 | raise NotImplementedError | |
| 1350 |
|
1390 | |||
| 1351 | def __writeFirstHeader(self): |
|
1391 | def __writeFirstHeader(self): | |
| 1352 | """ |
|
1392 | """ | |
| 1353 | Escribe el primer header del file es decir el Basic header y el Long header (SystemHeader, RadarControllerHeader, ProcessingHeader) |
|
1393 | Escribe el primer header del file es decir el Basic header y el Long header (SystemHeader, RadarControllerHeader, ProcessingHeader) | |
| 1354 |
|
1394 | |||
| 1355 | Affected: |
|
1395 | Affected: | |
| 1356 | __dataType |
|
1396 | __dataType | |
| 1357 |
|
1397 | |||
| 1358 | Return: |
|
1398 | Return: | |
| 1359 | None |
|
1399 | None | |
| 1360 | """ |
|
1400 | """ | |
| 1361 |
|
1401 | |||
| 1362 | # CALCULAR PARAMETROS |
|
1402 | # CALCULAR PARAMETROS | |
| 1363 |
|
1403 | |||
| 1364 | sizeLongHeader = self.systemHeaderObj.size + \ |
|
1404 | sizeLongHeader = self.systemHeaderObj.size + \ | |
| 1365 | self.radarControllerHeaderObj.size + self.processingHeaderObj.size |
|
1405 | self.radarControllerHeaderObj.size + self.processingHeaderObj.size | |
| 1366 | self.basicHeaderObj.size = self.basicHeaderSize + sizeLongHeader |
|
1406 | self.basicHeaderObj.size = self.basicHeaderSize + sizeLongHeader | |
| 1367 |
|
1407 | |||
| 1368 | self.basicHeaderObj.write(self.fp) |
|
1408 | self.basicHeaderObj.write(self.fp) | |
| 1369 | self.systemHeaderObj.write(self.fp) |
|
1409 | self.systemHeaderObj.write(self.fp) | |
| 1370 | self.radarControllerHeaderObj.write(self.fp) |
|
1410 | self.radarControllerHeaderObj.write(self.fp) | |
| 1371 | self.processingHeaderObj.write(self.fp) |
|
1411 | self.processingHeaderObj.write(self.fp) | |
| 1372 |
|
1412 | |||
| 1373 | def __setNewBlock(self): |
|
1413 | def __setNewBlock(self): | |
| 1374 | """ |
|
1414 | """ | |
| 1375 | Si es un nuevo file escribe el First Header caso contrario escribe solo el Basic Header |
|
1415 | Si es un nuevo file escribe el First Header caso contrario escribe solo el Basic Header | |
| 1376 |
|
1416 | |||
| 1377 | Return: |
|
1417 | Return: | |
| 1378 | 0 : si no pudo escribir nada |
|
1418 | 0 : si no pudo escribir nada | |
| 1379 | 1 : Si escribio el Basic el First Header |
|
1419 | 1 : Si escribio el Basic el First Header | |
| 1380 | """ |
|
1420 | """ | |
| 1381 | if self.fp == None: |
|
1421 | if self.fp == None: | |
| 1382 | self.setNextFile() |
|
1422 | self.setNextFile() | |
| 1383 |
|
1423 | |||
| 1384 | if self.flagIsNewFile: |
|
1424 | if self.flagIsNewFile: | |
| 1385 | return 1 |
|
1425 | return 1 | |
| 1386 |
|
1426 | |||
| 1387 | if self.blockIndex < self.processingHeaderObj.dataBlocksPerFile: |
|
1427 | if self.blockIndex < self.processingHeaderObj.dataBlocksPerFile: | |
| 1388 | self.basicHeaderObj.write(self.fp) |
|
1428 | self.basicHeaderObj.write(self.fp) | |
| 1389 | return 1 |
|
1429 | return 1 | |
| 1390 |
|
1430 | |||
| 1391 | if not(self.setNextFile()): |
|
1431 | if not(self.setNextFile()): | |
| 1392 | return 0 |
|
1432 | return 0 | |
| 1393 |
|
1433 | |||
| 1394 | return 1 |
|
1434 | return 1 | |
| 1395 |
|
1435 | |||
| 1396 | def writeNextBlock(self): |
|
1436 | def writeNextBlock(self): | |
| 1397 | """ |
|
1437 | """ | |
| 1398 | Selecciona el bloque siguiente de datos y los escribe en un file |
|
1438 | Selecciona el bloque siguiente de datos y los escribe en un file | |
| 1399 |
|
1439 | |||
| 1400 | Return: |
|
1440 | Return: | |
| 1401 | 0 : Si no hizo pudo escribir el bloque de datos |
|
1441 | 0 : Si no hizo pudo escribir el bloque de datos | |
| 1402 | 1 : Si no pudo escribir el bloque de datos |
|
1442 | 1 : Si no pudo escribir el bloque de datos | |
| 1403 | """ |
|
1443 | """ | |
| 1404 | if not(self.__setNewBlock()): |
|
1444 | if not(self.__setNewBlock()): | |
| 1405 | return 0 |
|
1445 | return 0 | |
| 1406 |
|
1446 | |||
| 1407 | self.writeBlock() |
|
1447 | self.writeBlock() | |
| 1408 |
|
1448 | |||
| 1409 | print("[Writing] Block No. %d/%d" % (self.blockIndex, |
|
1449 | print("[Writing] Block No. %d/%d" % (self.blockIndex, | |
| 1410 | self.processingHeaderObj.dataBlocksPerFile)) |
|
1450 | self.processingHeaderObj.dataBlocksPerFile)) | |
| 1411 |
|
1451 | |||
| 1412 | return 1 |
|
1452 | return 1 | |
| 1413 |
|
1453 | |||
| 1414 | def setNextFile(self): |
|
1454 | def setNextFile(self): | |
| 1415 | """Determina el siguiente file que sera escrito |
|
1455 | """Determina el siguiente file que sera escrito | |
| 1416 |
|
1456 | |||
| 1417 | Affected: |
|
1457 | Affected: | |
| 1418 | self.filename |
|
1458 | self.filename | |
| 1419 | self.subfolder |
|
1459 | self.subfolder | |
| 1420 | self.fp |
|
1460 | self.fp | |
| 1421 | self.setFile |
|
1461 | self.setFile | |
| 1422 | self.flagIsNewFile |
|
1462 | self.flagIsNewFile | |
| 1423 |
|
1463 | |||
| 1424 | Return: |
|
1464 | Return: | |
| 1425 | 0 : Si el archivo no puede ser escrito |
|
1465 | 0 : Si el archivo no puede ser escrito | |
| 1426 | 1 : Si el archivo esta listo para ser escrito |
|
1466 | 1 : Si el archivo esta listo para ser escrito | |
| 1427 | """ |
|
1467 | """ | |
| 1428 | ext = self.ext |
|
1468 | ext = self.ext | |
| 1429 | path = self.path |
|
1469 | path = self.path | |
| 1430 |
|
1470 | |||
| 1431 | if self.fp != None: |
|
1471 | if self.fp != None: | |
| 1432 | self.fp.close() |
|
1472 | self.fp.close() | |
| 1433 |
|
1473 | |||
| 1434 | if not os.path.exists(path): |
|
1474 | if not os.path.exists(path): | |
| 1435 | os.mkdir(path) |
|
1475 | os.mkdir(path) | |
| 1436 |
|
1476 | |||
| 1437 | timeTuple = time.localtime(self.dataOut.utctime) |
|
1477 | timeTuple = time.localtime(self.dataOut.utctime) | |
| 1438 | subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year, timeTuple.tm_yday) |
|
1478 | subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year, timeTuple.tm_yday) | |
| 1439 |
|
1479 | |||
| 1440 | fullpath = os.path.join(path, subfolder) |
|
1480 | fullpath = os.path.join(path, subfolder) | |
| 1441 | setFile = self.setFile |
|
1481 | setFile = self.setFile | |
| 1442 |
|
1482 | |||
| 1443 | if not(os.path.exists(fullpath)): |
|
1483 | if not(os.path.exists(fullpath)): | |
| 1444 | os.mkdir(fullpath) |
|
1484 | os.mkdir(fullpath) | |
| 1445 | setFile = -1 # inicializo mi contador de seteo |
|
1485 | setFile = -1 # inicializo mi contador de seteo | |
| 1446 | else: |
|
1486 | else: | |
| 1447 | filesList = os.listdir(fullpath) |
|
1487 | filesList = os.listdir(fullpath) | |
| 1448 | if len(filesList) > 0: |
|
1488 | if len(filesList) > 0: | |
| 1449 | filesList = sorted(filesList, key=str.lower) |
|
1489 | filesList = sorted(filesList, key=str.lower) | |
| 1450 | filen = filesList[-1] |
|
1490 | filen = filesList[-1] | |
| 1451 | # el filename debera tener el siguiente formato |
|
1491 | # el filename debera tener el siguiente formato | |
| 1452 | # 0 1234 567 89A BCDE (hex) |
|
1492 | # 0 1234 567 89A BCDE (hex) | |
| 1453 | # x YYYY DDD SSS .ext |
|
1493 | # x YYYY DDD SSS .ext | |
| 1454 | if isNumber(filen[8:11]): |
|
1494 | if isNumber(filen[8:11]): | |
| 1455 | # inicializo mi contador de seteo al seteo del ultimo file |
|
1495 | # inicializo mi contador de seteo al seteo del ultimo file | |
| 1456 | setFile = int(filen[8:11]) |
|
1496 | setFile = int(filen[8:11]) | |
| 1457 | else: |
|
1497 | else: | |
| 1458 | setFile = -1 |
|
1498 | setFile = -1 | |
| 1459 | else: |
|
1499 | else: | |
| 1460 | setFile = -1 # inicializo mi contador de seteo |
|
1500 | setFile = -1 # inicializo mi contador de seteo | |
| 1461 |
|
1501 | |||
| 1462 | setFile += 1 |
|
1502 | setFile += 1 | |
| 1463 |
|
1503 | |||
| 1464 | # If this is a new day it resets some values |
|
1504 | # If this is a new day it resets some values | |
| 1465 | if self.dataOut.datatime.date() > self.fileDate: |
|
1505 | if self.dataOut.datatime.date() > self.fileDate: | |
| 1466 | setFile = 0 |
|
1506 | setFile = 0 | |
| 1467 | self.nTotalBlocks = 0 |
|
1507 | self.nTotalBlocks = 0 | |
| 1468 |
|
1508 | |||
| 1469 | filen = '{}{:04d}{:03d}{:03d}{}'.format( |
|
1509 | filen = '{}{:04d}{:03d}{:03d}{}'.format( | |
| 1470 |
self.optchar, timeTuple.tm_year, timeTuple.tm_yday, setFile, ext) |
|
1510 | self.optchar, timeTuple.tm_year, timeTuple.tm_yday, setFile, ext) | |
| 1471 |
|
1511 | |||
| 1472 | filename = os.path.join(path, subfolder, filen) |
|
1512 | filename = os.path.join(path, subfolder, filen) | |
| 1473 |
|
1513 | |||
| 1474 | fp = open(filename, 'wb') |
|
1514 | fp = open(filename, 'wb') | |
| 1475 |
|
1515 | |||
| 1476 | self.blockIndex = 0 |
|
1516 | self.blockIndex = 0 | |
| 1477 | self.filename = filename |
|
1517 | self.filename = filename | |
| 1478 | self.subfolder = subfolder |
|
1518 | self.subfolder = subfolder | |
| 1479 | self.fp = fp |
|
1519 | self.fp = fp | |
| 1480 | self.setFile = setFile |
|
1520 | self.setFile = setFile | |
| 1481 | self.flagIsNewFile = 1 |
|
1521 | self.flagIsNewFile = 1 | |
| 1482 | self.fileDate = self.dataOut.datatime.date() |
|
1522 | self.fileDate = self.dataOut.datatime.date() | |
| 1483 | self.setFirstHeader() |
|
1523 | self.setFirstHeader() | |
| 1484 |
|
1524 | |||
| 1485 | print('[Writing] Opening file: %s' % self.filename) |
|
1525 | print('[Writing] Opening file: %s' % self.filename) | |
| 1486 |
|
1526 | |||
| 1487 | self.__writeFirstHeader() |
|
1527 | self.__writeFirstHeader() | |
| 1488 |
|
1528 | |||
| 1489 | return 1 |
|
1529 | return 1 | |
| 1490 |
|
1530 | |||
| 1491 | def setup(self, dataOut, path, blocksPerFile, profilesPerBlock=64, set=None, ext=None, datatype=4): |
|
1531 | def setup(self, dataOut, path, blocksPerFile, profilesPerBlock=64, set=None, ext=None, datatype=4): | |
| 1492 | """ |
|
1532 | """ | |
| 1493 | Setea el tipo de formato en la cual sera guardada la data y escribe el First Header |
|
1533 | Setea el tipo de formato en la cual sera guardada la data y escribe el First Header | |
| 1494 |
|
1534 | |||
| 1495 | Inputs: |
|
1535 | Inputs: | |
| 1496 | path : directory where data will be saved |
|
1536 | path : directory where data will be saved | |
| 1497 | profilesPerBlock : number of profiles per block |
|
1537 | profilesPerBlock : number of profiles per block | |
| 1498 | set : initial file set |
|
1538 | set : initial file set | |
| 1499 | datatype : An integer number that defines data type: |
|
1539 | datatype : An integer number that defines data type: | |
| 1500 | 0 : int8 (1 byte) |
|
1540 | 0 : int8 (1 byte) | |
| 1501 | 1 : int16 (2 bytes) |
|
1541 | 1 : int16 (2 bytes) | |
| 1502 | 2 : int32 (4 bytes) |
|
1542 | 2 : int32 (4 bytes) | |
| 1503 | 3 : int64 (8 bytes) |
|
1543 | 3 : int64 (8 bytes) | |
| 1504 | 4 : float32 (4 bytes) |
|
1544 | 4 : float32 (4 bytes) | |
| 1505 | 5 : double64 (8 bytes) |
|
1545 | 5 : double64 (8 bytes) | |
| 1506 |
|
1546 | |||
| 1507 | Return: |
|
1547 | Return: | |
| 1508 | 0 : Si no realizo un buen seteo |
|
1548 | 0 : Si no realizo un buen seteo | |
| 1509 | 1 : Si realizo un buen seteo |
|
1549 | 1 : Si realizo un buen seteo | |
| 1510 | """ |
|
1550 | """ | |
| 1511 |
|
1551 | |||
| 1512 | if ext == None: |
|
1552 | if ext == None: | |
| 1513 | ext = self.ext |
|
1553 | ext = self.ext | |
| 1514 |
|
1554 | |||
| 1515 | self.ext = ext.lower() |
|
1555 | self.ext = ext.lower() | |
| 1516 |
|
1556 | |||
| 1517 | self.path = path |
|
1557 | self.path = path | |
| 1518 |
|
1558 | |||
| 1519 | if set is None: |
|
1559 | if set is None: | |
| 1520 | self.setFile = -1 |
|
1560 | self.setFile = -1 | |
| 1521 | else: |
|
1561 | else: | |
| 1522 |
self.setFile = set - 1 |
|
1562 | self.setFile = set - 1 | |
| 1523 |
|
1563 | |||
| 1524 | self.blocksPerFile = blocksPerFile |
|
1564 | self.blocksPerFile = blocksPerFile | |
| 1525 | self.profilesPerBlock = profilesPerBlock |
|
1565 | self.profilesPerBlock = profilesPerBlock | |
| 1526 | self.dataOut = dataOut |
|
1566 | self.dataOut = dataOut | |
| 1527 | self.fileDate = self.dataOut.datatime.date() |
|
1567 | self.fileDate = self.dataOut.datatime.date() | |
| 1528 | self.dtype = self.dataOut.dtype |
|
1568 | self.dtype = self.dataOut.dtype | |
| 1529 |
|
1569 | |||
| 1530 | if datatype is not None: |
|
1570 | if datatype is not None: | |
| 1531 | self.dtype = get_numpy_dtype(datatype) |
|
1571 | self.dtype = get_numpy_dtype(datatype) | |
| 1532 |
|
1572 | |||
| 1533 | if not(self.setNextFile()): |
|
1573 | if not(self.setNextFile()): | |
| 1534 | print("[Writing] There isn't a next file") |
|
1574 | print("[Writing] There isn't a next file") | |
| 1535 | return 0 |
|
1575 | return 0 | |
| 1536 |
|
1576 | |||
| 1537 | self.setBlockDimension() |
|
1577 | self.setBlockDimension() | |
| 1538 |
|
1578 | |||
| 1539 | return 1 |
|
1579 | return 1 | |
| 1540 |
|
1580 | |||
| 1541 | def run(self, dataOut, path, blocksPerFile=100, profilesPerBlock=64, set=None, ext=None, datatype=4, **kwargs): |
|
1581 | def run(self, dataOut, path, blocksPerFile=100, profilesPerBlock=64, set=None, ext=None, datatype=4, **kwargs): | |
| 1542 |
|
1582 | |||
| 1543 | if not(self.isConfig): |
|
1583 | if not(self.isConfig): | |
| 1544 |
|
1584 | |||
| 1545 | self.setup(dataOut, path, blocksPerFile, profilesPerBlock=profilesPerBlock, |
|
1585 | self.setup(dataOut, path, blocksPerFile, profilesPerBlock=profilesPerBlock, | |
| 1546 | set=set, ext=ext, datatype=datatype, **kwargs) |
|
1586 | set=set, ext=ext, datatype=datatype, **kwargs) | |
| 1547 | self.isConfig = True |
|
1587 | self.isConfig = True | |
| 1548 |
|
1588 | |||
| 1549 | self.dataOut = dataOut |
|
1589 | self.dataOut = dataOut | |
| 1550 | self.putData() |
|
1590 | self.putData() | |
| 1551 | return self.dataOut |
|
1591 | return self.dataOut | |
| 1552 |
|
1592 | |||
| 1553 | @MPDecorator |
|
1593 | @MPDecorator | |
| 1554 | class printInfo(Operation): |
|
1594 | class printInfo(Operation): | |
| 1555 |
|
1595 | |||
| 1556 | def __init__(self): |
|
1596 | def __init__(self): | |
| 1557 |
|
1597 | |||
| 1558 | Operation.__init__(self) |
|
1598 | Operation.__init__(self) | |
| 1559 | self.__printInfo = True |
|
1599 | self.__printInfo = True | |
| 1560 |
|
1600 | |||
| 1561 | def run(self, dataOut, headers = ['systemHeaderObj', 'radarControllerHeaderObj', 'processingHeaderObj']): |
|
1601 | def run(self, dataOut, headers = ['systemHeaderObj', 'radarControllerHeaderObj', 'processingHeaderObj']): | |
| 1562 | if self.__printInfo == False: |
|
1602 | if self.__printInfo == False: | |
| 1563 | return |
|
1603 | return | |
| 1564 |
|
1604 | |||
| 1565 | for header in headers: |
|
1605 | for header in headers: | |
| 1566 | if hasattr(dataOut, header): |
|
1606 | if hasattr(dataOut, header): | |
| 1567 | obj = getattr(dataOut, header) |
|
1607 | obj = getattr(dataOut, header) | |
| 1568 | if hasattr(obj, 'printInfo'): |
|
1608 | if hasattr(obj, 'printInfo'): | |
| 1569 | obj.printInfo() |
|
1609 | obj.printInfo() | |
| 1570 | else: |
|
1610 | else: | |
| 1571 | print(obj) |
|
1611 | print(obj) | |
| 1572 | else: |
|
1612 | else: | |
| 1573 | log.warning('Header {} Not found in object'.format(header)) |
|
1613 | log.warning('Header {} Not found in object'.format(header)) | |
| 1574 |
|
1614 | |||
| 1575 | self.__printInfo = False |
|
1615 | self.__printInfo = False | |
| @@ -1,595 +1,629 | |||||
| 1 | ''' |
|
1 | ''' | |
| 2 | Created on Aug 1, 2017 |
|
2 | Created on Aug 1, 2017 | |
| 3 |
|
3 | |||
| 4 | @author: Juan C. Espinoza |
|
4 | @author: Juan C. Espinoza | |
| 5 | ''' |
|
5 | ''' | |
| 6 |
|
6 | |||
| 7 | import os |
|
7 | import os | |
| 8 | import sys |
|
8 | import sys | |
| 9 | import time |
|
9 | import time | |
| 10 | import json |
|
10 | import json | |
| 11 | import glob |
|
11 | import glob | |
| 12 | import datetime |
|
12 | import datetime | |
| 13 |
|
13 | |||
| 14 | import numpy |
|
14 | import numpy | |
| 15 | import h5py |
|
15 | import h5py | |
| 16 |
|
16 | |||
| 17 | import schainpy.admin |
|
17 | import schainpy.admin | |
| 18 | from schainpy.model.io.jroIO_base import LOCALTIME, Reader |
|
18 | from schainpy.model.io.jroIO_base import LOCALTIME, Reader | |
| 19 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator |
|
19 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator | |
| 20 | from schainpy.model.data.jrodata import Parameters |
|
20 | from schainpy.model.data.jrodata import Parameters | |
| 21 | from schainpy.utils import log |
|
21 | from schainpy.utils import log | |
| 22 |
|
22 | |||
| 23 | try: |
|
23 | try: | |
| 24 | import madrigal.cedar |
|
24 | import madrigal.cedar | |
| 25 | except: |
|
25 | except: | |
| 26 | pass |
|
26 | pass | |
| 27 |
|
27 | |||
| 28 | try: |
|
28 | try: | |
| 29 | basestring |
|
29 | basestring | |
| 30 | except: |
|
30 | except: | |
| 31 | basestring = str |
|
31 | basestring = str | |
| 32 |
|
32 | |||
| 33 | DEF_CATALOG = { |
|
33 | DEF_CATALOG = { | |
| 34 | 'principleInvestigator': 'Marco Milla', |
|
34 | 'principleInvestigator': 'Marco Milla', | |
| 35 | 'expPurpose': '', |
|
35 | 'expPurpose': '', | |
| 36 | 'cycleTime': '', |
|
36 | 'cycleTime': '', | |
| 37 | 'correlativeExp': '', |
|
37 | 'correlativeExp': '', | |
| 38 | 'sciRemarks': '', |
|
38 | 'sciRemarks': '', | |
| 39 | 'instRemarks': '' |
|
39 | 'instRemarks': '' | |
| 40 | } |
|
40 | } | |
| 41 |
|
41 | |||
| 42 | DEF_HEADER = { |
|
42 | DEF_HEADER = { | |
| 43 | 'kindatDesc': '', |
|
43 | 'kindatDesc': '', | |
| 44 | 'analyst': 'Jicamarca User', |
|
44 | 'analyst': 'Jicamarca User', | |
| 45 | 'comments': '', |
|
45 | 'comments': '', | |
| 46 | 'history': '' |
|
46 | 'history': '' | |
| 47 | } |
|
47 | } | |
| 48 |
|
48 | |||
| 49 | MNEMONICS = { |
|
49 | MNEMONICS = { | |
| 50 | 10: 'jro', |
|
50 | 10: 'jro', | |
| 51 | 11: 'jbr', |
|
51 | 11: 'jbr', | |
| 52 | 840: 'jul', |
|
52 | 840: 'jul', | |
| 53 | 13: 'jas', |
|
53 | 13: 'jas', | |
| 54 | 1000: 'pbr', |
|
54 | 1000: 'pbr', | |
| 55 | 1001: 'hbr', |
|
55 | 1001: 'hbr', | |
| 56 | 1002: 'obr', |
|
56 | 1002: 'obr', | |
| 57 | 400: 'clr' |
|
57 | 400: 'clr' | |
| 58 |
|
58 | |||
| 59 | } |
|
59 | } | |
| 60 |
|
60 | |||
| 61 | UT1970 = datetime.datetime(1970, 1, 1) - datetime.timedelta(seconds=time.timezone) |
|
61 | UT1970 = datetime.datetime(1970, 1, 1) - datetime.timedelta(seconds=time.timezone) | |
| 62 |
|
62 | |||
| 63 | def load_json(obj): |
|
63 | def load_json(obj): | |
| 64 | ''' |
|
64 | ''' | |
| 65 | Parse json as string instead of unicode |
|
65 | Parse json as string instead of unicode | |
| 66 | ''' |
|
66 | ''' | |
| 67 |
|
67 | |||
| 68 | if isinstance(obj, str): |
|
68 | if isinstance(obj, str): | |
| 69 | iterable = json.loads(obj) |
|
69 | iterable = json.loads(obj) | |
| 70 | else: |
|
70 | else: | |
| 71 | iterable = obj |
|
71 | iterable = obj | |
| 72 |
|
72 | |||
| 73 | if isinstance(iterable, dict): |
|
73 | if isinstance(iterable, dict): | |
| 74 | return {str(k): load_json(v) if isinstance(v, dict) else str(v) if isinstance(v, basestring) else v |
|
74 | return {str(k): load_json(v) if isinstance(v, dict) else str(v) if isinstance(v, basestring) else v | |
| 75 | for k, v in list(iterable.items())} |
|
75 | for k, v in list(iterable.items())} | |
| 76 | elif isinstance(iterable, (list, tuple)): |
|
76 | elif isinstance(iterable, (list, tuple)): | |
| 77 | return [str(v) if isinstance(v, basestring) else v for v in iterable] |
|
77 | return [str(v) if isinstance(v, basestring) else v for v in iterable] | |
| 78 |
|
78 | |||
| 79 | return iterable |
|
79 | return iterable | |
| 80 |
|
80 | |||
| 81 |
|
81 | |||
| 82 | class MADReader(Reader, ProcessingUnit): |
|
82 | class MADReader(Reader, ProcessingUnit): | |
| 83 |
|
83 | |||
| 84 | def __init__(self): |
|
84 | def __init__(self): | |
| 85 |
|
85 | |||
| 86 | ProcessingUnit.__init__(self) |
|
86 | ProcessingUnit.__init__(self) | |
| 87 |
|
87 | |||
| 88 |
self.dataOut = Parameters() |
|
88 | self.dataOut = Parameters() | |
| 89 | self.counter_records = 0 |
|
89 | self.counter_records = 0 | |
| 90 | self.nrecords = None |
|
90 | self.nrecords = None | |
| 91 | self.flagNoMoreFiles = 0 |
|
91 | self.flagNoMoreFiles = 0 | |
| 92 |
self.filename = None |
|
92 | self.filename = None | |
| 93 | self.intervals = set() |
|
93 | self.intervals = set() | |
| 94 | self.datatime = datetime.datetime(1900,1,1) |
|
94 | self.datatime = datetime.datetime(1900,1,1) | |
| 95 | self.format = None |
|
95 | self.format = None | |
| 96 | self.filefmt = "***%Y%m%d*******" |
|
96 | self.filefmt = "***%Y%m%d*******" | |
| 97 |
|
97 | |||
| 98 | def setup(self, **kwargs): |
|
98 | def setup(self, **kwargs): | |
| 99 |
|
99 | |||
| 100 | self.set_kwargs(**kwargs) |
|
100 | self.set_kwargs(**kwargs) | |
| 101 | self.oneDDict = load_json(self.oneDDict) |
|
101 | self.oneDDict = load_json(self.oneDDict) | |
| 102 | self.twoDDict = load_json(self.twoDDict) |
|
102 | self.twoDDict = load_json(self.twoDDict) | |
| 103 | self.ind2DList = load_json(self.ind2DList) |
|
103 | self.ind2DList = load_json(self.ind2DList) | |
| 104 | self.independentParam = self.ind2DList[0] |
|
104 | self.independentParam = self.ind2DList[0] | |
| 105 |
|
105 | |||
| 106 | if self.path is None: |
|
106 | if self.path is None: | |
| 107 | raise ValueError('The path is not valid') |
|
107 | raise ValueError('The path is not valid') | |
| 108 |
|
108 | |||
| 109 | self.open_file = open |
|
109 | self.open_file = open | |
| 110 | self.open_mode = 'rb' |
|
110 | self.open_mode = 'rb' | |
| 111 |
|
111 | |||
| 112 | if self.format is None: |
|
112 | if self.format is None: | |
| 113 | raise ValueError('The format is not valid choose simple or hdf5') |
|
113 | raise ValueError('The format is not valid choose simple or hdf5') | |
| 114 | elif self.format.lower() in ('simple', 'txt'): |
|
114 | elif self.format.lower() in ('simple', 'txt'): | |
| 115 | self.ext = '.txt' |
|
115 | self.ext = '.txt' | |
| 116 | elif self.format.lower() in ('cedar',): |
|
116 | elif self.format.lower() in ('cedar',): | |
| 117 | self.ext = '.001' |
|
117 | self.ext = '.001' | |
| 118 | else: |
|
118 | else: | |
| 119 | self.ext = '.hdf5' |
|
119 | self.ext = '.hdf5' | |
| 120 | self.open_file = h5py.File |
|
120 | self.open_file = h5py.File | |
| 121 | self.open_mode = 'r' |
|
121 | self.open_mode = 'r' | |
| 122 |
|
122 | |||
| 123 | if self.online: |
|
123 | if self.online: | |
| 124 | log.log("Searching files in online mode...", self.name) |
|
124 | log.log("Searching files in online mode...", self.name) | |
| 125 |
|
125 | |||
| 126 | for nTries in range(self.nTries): |
|
126 | for nTries in range(self.nTries): | |
| 127 | fullpath = self.searchFilesOnLine(self.path, self.startDate, |
|
127 | fullpath = self.searchFilesOnLine(self.path, self.startDate, | |
| 128 |
self.endDate, self.expLabel, self.ext, self.walk, |
|
128 | self.endDate, self.expLabel, self.ext, self.walk, | |
| 129 | self.filefmt, self.folderfmt) |
|
129 | self.filefmt, self.folderfmt) | |
| 130 |
|
130 | |||
| 131 | try: |
|
131 | try: | |
| 132 | fullpath = next(fullpath) |
|
132 | fullpath = next(fullpath) | |
| 133 | except: |
|
133 | except: | |
| 134 | fullpath = None |
|
134 | fullpath = None | |
| 135 |
|
135 | |||
| 136 | if fullpath: |
|
136 | if fullpath: | |
| 137 | break |
|
137 | break | |
| 138 |
|
138 | |||
| 139 | log.warning( |
|
139 | log.warning( | |
| 140 | 'Waiting {} sec for a valid file in {}: try {} ...'.format( |
|
140 | 'Waiting {} sec for a valid file in {}: try {} ...'.format( | |
| 141 |
self.delay, self.path, nTries + 1), |
|
141 | self.delay, self.path, nTries + 1), | |
| 142 | self.name) |
|
142 | self.name) | |
| 143 | time.sleep(self.delay) |
|
143 | time.sleep(self.delay) | |
| 144 |
|
144 | |||
| 145 | if not(fullpath): |
|
145 | if not(fullpath): | |
| 146 | raise schainpy.admin.SchainError( |
|
146 | raise schainpy.admin.SchainError( | |
| 147 |
'There isn\'t any valid file in {}'.format(self.path)) |
|
147 | 'There isn\'t any valid file in {}'.format(self.path)) | |
| 148 |
|
148 | |||
| 149 | else: |
|
149 | else: | |
| 150 | log.log("Searching files in {}".format(self.path), self.name) |
|
150 | log.log("Searching files in {}".format(self.path), self.name) | |
| 151 |
self.filenameList = self.searchFilesOffLine(self.path, self.startDate, |
|
151 | self.filenameList = self.searchFilesOffLine(self.path, self.startDate, | |
| 152 | self.endDate, self.expLabel, self.ext, self.walk, self.filefmt, self.folderfmt) |
|
152 | self.endDate, self.expLabel, self.ext, self.walk, self.filefmt, self.folderfmt) | |
| 153 |
|
153 | |||
| 154 | self.setNextFile() |
|
154 | self.setNextFile() | |
| 155 |
|
155 | |||
| 156 | def readFirstHeader(self): |
|
156 | def readFirstHeader(self): | |
| 157 | '''Read header and data''' |
|
157 | '''Read header and data''' | |
| 158 |
|
158 | |||
| 159 | self.parseHeader() |
|
159 | self.parseHeader() | |
| 160 | self.parseData() |
|
160 | self.parseData() | |
| 161 | self.blockIndex = 0 |
|
161 | self.blockIndex = 0 | |
| 162 |
|
162 | |||
| 163 |
return |
|
163 | return | |
| 164 |
|
164 | |||
| 165 | def parseHeader(self): |
|
165 | def parseHeader(self): | |
| 166 | ''' |
|
166 | ''' | |
| 167 | ''' |
|
167 | ''' | |
| 168 |
|
168 | |||
| 169 | self.output = {} |
|
169 | self.output = {} | |
| 170 | self.version = '2' |
|
170 | self.version = '2' | |
| 171 | s_parameters = None |
|
171 | s_parameters = None | |
| 172 | if self.ext == '.txt': |
|
172 | if self.ext == '.txt': | |
| 173 | self.parameters = [s.strip().lower() for s in self.fp.readline().decode().strip().split(' ') if s] |
|
173 | self.parameters = [s.strip().lower() for s in self.fp.readline().decode().strip().split(' ') if s] | |
| 174 | elif self.ext == '.hdf5': |
|
174 | elif self.ext == '.hdf5': | |
| 175 | self.metadata = self.fp['Metadata'] |
|
175 | self.metadata = self.fp['Metadata'] | |
| 176 | if '_record_layout' in self.metadata: |
|
176 | if '_record_layout' in self.metadata: | |
| 177 | s_parameters = [s[0].lower().decode() for s in self.metadata['Independent Spatial Parameters']] |
|
177 | s_parameters = [s[0].lower().decode() for s in self.metadata['Independent Spatial Parameters']] | |
| 178 | self.version = '3' |
|
178 | self.version = '3' | |
| 179 | self.parameters = [s[0].lower().decode() for s in self.metadata['Data Parameters']] |
|
179 | self.parameters = [s[0].lower().decode() for s in self.metadata['Data Parameters']] | |
| 180 |
|
180 | |||
| 181 | log.success('Parameters found: {}'.format(self.parameters), |
|
181 | log.success('Parameters found: {}'.format(self.parameters), | |
| 182 | 'MADReader') |
|
182 | 'MADReader') | |
| 183 | if s_parameters: |
|
183 | if s_parameters: | |
| 184 | log.success('Spatial parameters found: {}'.format(s_parameters), |
|
184 | log.success('Spatial parameters found: {}'.format(s_parameters), | |
| 185 | 'MADReader') |
|
185 | 'MADReader') | |
| 186 |
|
186 | |||
| 187 | for param in list(self.oneDDict.keys()): |
|
187 | for param in list(self.oneDDict.keys()): | |
| 188 | if param.lower() not in self.parameters: |
|
188 | if param.lower() not in self.parameters: | |
| 189 | log.warning( |
|
189 | log.warning( | |
| 190 | 'Parameter {} not found will be ignored'.format( |
|
190 | 'Parameter {} not found will be ignored'.format( | |
| 191 | param), |
|
191 | param), | |
| 192 | 'MADReader') |
|
192 | 'MADReader') | |
| 193 | self.oneDDict.pop(param, None) |
|
193 | self.oneDDict.pop(param, None) | |
| 194 |
|
194 | |||
| 195 | for param, value in list(self.twoDDict.items()): |
|
195 | for param, value in list(self.twoDDict.items()): | |
| 196 | if param.lower() not in self.parameters: |
|
196 | if param.lower() not in self.parameters: | |
| 197 | log.warning( |
|
197 | log.warning( | |
| 198 | 'Parameter {} not found, it will be ignored'.format( |
|
198 | 'Parameter {} not found, it will be ignored'.format( | |
| 199 | param), |
|
199 | param), | |
| 200 | 'MADReader') |
|
200 | 'MADReader') | |
| 201 | self.twoDDict.pop(param, None) |
|
201 | self.twoDDict.pop(param, None) | |
| 202 | continue |
|
202 | continue | |
| 203 | if isinstance(value, list): |
|
203 | if isinstance(value, list): | |
| 204 | if value[0] not in self.output: |
|
204 | if value[0] not in self.output: | |
| 205 | self.output[value[0]] = [] |
|
205 | self.output[value[0]] = [] | |
| 206 | self.output[value[0]].append([]) |
|
206 | self.output[value[0]].append([]) | |
| 207 |
|
207 | |||
| 208 | def parseData(self): |
|
208 | def parseData(self): | |
| 209 | ''' |
|
209 | ''' | |
| 210 | ''' |
|
210 | ''' | |
| 211 |
|
211 | |||
| 212 | if self.ext == '.txt': |
|
212 | if self.ext == '.txt': | |
| 213 | self.data = numpy.genfromtxt(self.fp, missing_values=('missing')) |
|
213 | self.data = numpy.genfromtxt(self.fp, missing_values=('missing')) | |
| 214 | self.nrecords = self.data.shape[0] |
|
214 | self.nrecords = self.data.shape[0] | |
| 215 | self.ranges = numpy.unique(self.data[:,self.parameters.index(self.independentParam.lower())]) |
|
215 | self.ranges = numpy.unique(self.data[:,self.parameters.index(self.independentParam.lower())]) | |
| 216 | self.counter_records = 0 |
|
216 | self.counter_records = 0 | |
| 217 | elif self.ext == '.hdf5': |
|
217 | elif self.ext == '.hdf5': | |
| 218 | self.data = self.fp['Data'] |
|
218 | self.data = self.fp['Data'] | |
| 219 | self.ranges = numpy.unique(self.data['Table Layout'][self.independentParam.lower()]) |
|
219 | self.ranges = numpy.unique(self.data['Table Layout'][self.independentParam.lower()]) | |
| 220 | self.times = numpy.unique(self.data['Table Layout']['ut1_unix']) |
|
220 | self.times = numpy.unique(self.data['Table Layout']['ut1_unix']) | |
| 221 | self.counter_records = int(self.data['Table Layout']['recno'][0]) |
|
221 | self.counter_records = int(self.data['Table Layout']['recno'][0]) | |
| 222 | self.nrecords = int(self.data['Table Layout']['recno'][-1]) |
|
222 | self.nrecords = int(self.data['Table Layout']['recno'][-1]) | |
| 223 |
|
223 | |||
| 224 | def readNextBlock(self): |
|
224 | def readNextBlock(self): | |
| 225 |
|
225 | |||
| 226 | while True: |
|
226 | while True: | |
| 227 | self.flagDiscontinuousBlock = 0 |
|
227 | self.flagDiscontinuousBlock = 0 | |
| 228 | if self.counter_records == self.nrecords: |
|
228 | if self.counter_records == self.nrecords: | |
| 229 |
self.setNextFile() |
|
229 | self.setNextFile() | |
| 230 |
|
230 | |||
| 231 | self.readBlock() |
|
231 | self.readBlock() | |
| 232 |
|
232 | |||
| 233 | if (self.datatime < datetime.datetime.combine(self.startDate, self.startTime)) or \ |
|
233 | if (self.datatime < datetime.datetime.combine(self.startDate, self.startTime)) or \ | |
| 234 | (self.datatime > datetime.datetime.combine(self.endDate, self.endTime)): |
|
234 | (self.datatime > datetime.datetime.combine(self.endDate, self.endTime)): | |
| 235 | log.warning( |
|
235 | log.warning( | |
| 236 | 'Reading Record No. {}/{} -> {} [Skipping]'.format( |
|
236 | 'Reading Record No. {}/{} -> {} [Skipping]'.format( | |
| 237 | self.counter_records, |
|
237 | self.counter_records, | |
| 238 | self.nrecords, |
|
238 | self.nrecords, | |
| 239 | self.datatime.ctime()), |
|
239 | self.datatime.ctime()), | |
| 240 | 'MADReader') |
|
240 | 'MADReader') | |
| 241 | continue |
|
241 | continue | |
| 242 | break |
|
242 | break | |
| 243 |
|
243 | |||
| 244 | log.log( |
|
244 | log.log( | |
| 245 | 'Reading Record No. {}/{} -> {}'.format( |
|
245 | 'Reading Record No. {}/{} -> {}'.format( | |
| 246 | self.counter_records, |
|
246 | self.counter_records, | |
| 247 | self.nrecords, |
|
247 | self.nrecords, | |
| 248 | self.datatime.ctime()), |
|
248 | self.datatime.ctime()), | |
| 249 | 'MADReader') |
|
249 | 'MADReader') | |
| 250 |
|
250 | |||
| 251 | return 1 |
|
251 | return 1 | |
| 252 |
|
252 | |||
| 253 | def readBlock(self): |
|
253 | def readBlock(self): | |
| 254 | ''' |
|
254 | ''' | |
| 255 | ''' |
|
255 | ''' | |
| 256 | dum = [] |
|
256 | dum = [] | |
| 257 | if self.ext == '.txt': |
|
257 | if self.ext == '.txt': | |
| 258 | dt = self.data[self.counter_records][:6].astype(int) |
|
258 | dt = self.data[self.counter_records][:6].astype(int) | |
| 259 | if datetime.datetime(dt[0], dt[1], dt[2], dt[3], dt[4], dt[5]).date() > self.datatime.date(): |
|
259 | if datetime.datetime(dt[0], dt[1], dt[2], dt[3], dt[4], dt[5]).date() > self.datatime.date(): | |
| 260 | self.flagDiscontinuousBlock = 1 |
|
260 | self.flagDiscontinuousBlock = 1 | |
| 261 | self.datatime = datetime.datetime(dt[0], dt[1], dt[2], dt[3], dt[4], dt[5]) |
|
261 | self.datatime = datetime.datetime(dt[0], dt[1], dt[2], dt[3], dt[4], dt[5]) | |
| 262 | while True: |
|
262 | while True: | |
| 263 | dt = self.data[self.counter_records][:6].astype(int) |
|
263 | dt = self.data[self.counter_records][:6].astype(int) | |
| 264 | datatime = datetime.datetime(dt[0], dt[1], dt[2], dt[3], dt[4], dt[5]) |
|
264 | datatime = datetime.datetime(dt[0], dt[1], dt[2], dt[3], dt[4], dt[5]) | |
| 265 | if datatime == self.datatime: |
|
265 | if datatime == self.datatime: | |
| 266 | dum.append(self.data[self.counter_records]) |
|
266 | dum.append(self.data[self.counter_records]) | |
| 267 | self.counter_records += 1 |
|
267 | self.counter_records += 1 | |
| 268 | if self.counter_records == self.nrecords: |
|
268 | if self.counter_records == self.nrecords: | |
| 269 | break |
|
269 | break | |
| 270 | continue |
|
270 | continue | |
| 271 |
self.intervals.add((datatime-self.datatime).seconds) |
|
271 | self.intervals.add((datatime-self.datatime).seconds) | |
| 272 | break |
|
272 | break | |
| 273 | elif self.ext == '.hdf5': |
|
273 | elif self.ext == '.hdf5': | |
| 274 | datatime = datetime.datetime.utcfromtimestamp( |
|
274 | datatime = datetime.datetime.utcfromtimestamp( | |
| 275 | self.times[self.counter_records]) |
|
275 | self.times[self.counter_records]) | |
| 276 | dum = self.data['Table Layout'][self.data['Table Layout']['recno']==self.counter_records] |
|
276 | dum = self.data['Table Layout'][self.data['Table Layout']['recno']==self.counter_records] | |
| 277 | self.intervals.add((datatime-self.datatime).seconds) |
|
277 | self.intervals.add((datatime-self.datatime).seconds) | |
| 278 | if datatime.date()>self.datatime.date(): |
|
278 | if datatime.date()>self.datatime.date(): | |
| 279 | self.flagDiscontinuousBlock = 1 |
|
279 | self.flagDiscontinuousBlock = 1 | |
| 280 | self.datatime = datatime |
|
280 | self.datatime = datatime | |
| 281 |
self.counter_records += 1 |
|
281 | self.counter_records += 1 | |
| 282 |
|
282 | |||
| 283 | self.buffer = numpy.array(dum) |
|
283 | self.buffer = numpy.array(dum) | |
| 284 | return |
|
284 | return | |
| 285 |
|
285 | |||
| 286 | def set_output(self): |
|
286 | def set_output(self): | |
| 287 | ''' |
|
287 | ''' | |
| 288 | Storing data from buffer to dataOut object |
|
288 | Storing data from buffer to dataOut object | |
| 289 |
''' |
|
289 | ''' | |
| 290 |
|
290 | |||
| 291 | parameters = [None for __ in self.parameters] |
|
291 | parameters = [None for __ in self.parameters] | |
| 292 |
|
292 | |||
| 293 |
for param, attr in list(self.oneDDict.items()): |
|
293 | for param, attr in list(self.oneDDict.items()): | |
| 294 | x = self.parameters.index(param.lower()) |
|
294 | x = self.parameters.index(param.lower()) | |
| 295 | setattr(self.dataOut, attr, self.buffer[0][x]) |
|
295 | setattr(self.dataOut, attr, self.buffer[0][x]) | |
| 296 |
|
296 | |||
| 297 | for param, value in list(self.twoDDict.items()): |
|
297 | for param, value in list(self.twoDDict.items()): | |
| 298 |
dummy = numpy.zeros(self.ranges.shape) + numpy.nan |
|
298 | dummy = numpy.zeros(self.ranges.shape) + numpy.nan | |
| 299 | if self.ext == '.txt': |
|
299 | if self.ext == '.txt': | |
| 300 | x = self.parameters.index(param.lower()) |
|
300 | x = self.parameters.index(param.lower()) | |
| 301 |
y = self.parameters.index(self.independentParam.lower()) |
|
301 | y = self.parameters.index(self.independentParam.lower()) | |
| 302 | ranges = self.buffer[:,y] |
|
302 | ranges = self.buffer[:,y] | |
| 303 | #if self.ranges.size == ranges.size: |
|
303 | #if self.ranges.size == ranges.size: | |
| 304 | # continue |
|
304 | # continue | |
| 305 | index = numpy.where(numpy.in1d(self.ranges, ranges))[0] |
|
305 | index = numpy.where(numpy.in1d(self.ranges, ranges))[0] | |
| 306 | dummy[index] = self.buffer[:,x] |
|
306 | dummy[index] = self.buffer[:,x] | |
| 307 | else: |
|
307 | else: | |
| 308 | ranges = self.buffer[self.independentParam.lower()] |
|
308 | ranges = self.buffer[self.independentParam.lower()] | |
| 309 | index = numpy.where(numpy.in1d(self.ranges, ranges))[0] |
|
309 | index = numpy.where(numpy.in1d(self.ranges, ranges))[0] | |
| 310 | dummy[index] = self.buffer[param.lower()] |
|
310 | dummy[index] = self.buffer[param.lower()] | |
| 311 |
|
311 | |||
| 312 | if isinstance(value, str): |
|
312 | if isinstance(value, str): | |
| 313 |
if value not in self.independentParam: |
|
313 | if value not in self.independentParam: | |
| 314 | setattr(self.dataOut, value, dummy.reshape(1,-1)) |
|
314 | setattr(self.dataOut, value, dummy.reshape(1,-1)) | |
| 315 |
elif isinstance(value, list): |
|
315 | elif isinstance(value, list): | |
| 316 | self.output[value[0]][value[1]] = dummy |
|
316 | self.output[value[0]][value[1]] = dummy | |
| 317 | parameters[value[1]] = param |
|
317 | parameters[value[1]] = param | |
| 318 | for key, value in list(self.output.items()): |
|
318 | for key, value in list(self.output.items()): | |
| 319 | setattr(self.dataOut, key, numpy.array(value)) |
|
319 | setattr(self.dataOut, key, numpy.array(value)) | |
| 320 |
|
320 | |||
| 321 | self.dataOut.parameters = [s for s in parameters if s] |
|
321 | self.dataOut.parameters = [s for s in parameters if s] | |
| 322 | self.dataOut.heightList = self.ranges |
|
322 | self.dataOut.heightList = self.ranges | |
| 323 | self.dataOut.utctime = (self.datatime - datetime.datetime(1970, 1, 1)).total_seconds() |
|
323 | self.dataOut.utctime = (self.datatime - datetime.datetime(1970, 1, 1)).total_seconds() | |
| 324 |
self.dataOut.utctimeInit = self.dataOut.utctime |
|
324 | self.dataOut.utctimeInit = self.dataOut.utctime | |
| 325 | self.dataOut.paramInterval = min(self.intervals) |
|
325 | self.dataOut.paramInterval = min(self.intervals) | |
| 326 |
self.dataOut.useLocalTime = False |
|
326 | self.dataOut.useLocalTime = False | |
| 327 |
self.dataOut.flagNoData = False |
|
327 | self.dataOut.flagNoData = False | |
| 328 | self.dataOut.nrecords = self.nrecords |
|
328 | self.dataOut.nrecords = self.nrecords | |
| 329 | self.dataOut.flagDiscontinuousBlock = self.flagDiscontinuousBlock |
|
329 | self.dataOut.flagDiscontinuousBlock = self.flagDiscontinuousBlock | |
| 330 |
|
330 | |||
| 331 | def getData(self): |
|
331 | def getData(self): | |
| 332 | ''' |
|
332 | ''' | |
| 333 | Storing data from databuffer to dataOut object |
|
333 | Storing data from databuffer to dataOut object | |
| 334 | ''' |
|
334 | ''' | |
| 335 |
|
335 | |||
| 336 | if not self.readNextBlock(): |
|
336 | if not self.readNextBlock(): | |
| 337 | self.dataOut.flagNoData = True |
|
337 | self.dataOut.flagNoData = True | |
| 338 | return 0 |
|
338 | return 0 | |
| 339 |
|
339 | |||
| 340 | self.set_output() |
|
340 | self.set_output() | |
| 341 |
|
341 | |||
| 342 | return 1 |
|
342 | return 1 | |
| 343 |
|
343 | |||
| 344 | def run(self, **kwargs): |
|
344 | def run(self, **kwargs): | |
| 345 |
|
345 | |||
| 346 | if not(self.isConfig): |
|
346 | if not(self.isConfig): | |
| 347 | self.setup(**kwargs) |
|
347 | self.setup(**kwargs) | |
| 348 | self.isConfig = True |
|
348 | self.isConfig = True | |
| 349 |
|
349 | |||
| 350 | self.getData() |
|
350 | self.getData() | |
| 351 |
|
351 | |||
| 352 | return |
|
352 | return | |
| 353 |
|
353 | |||
| 354 | @MPDecorator |
|
354 | @MPDecorator | |
| 355 | class MADWriter(Operation): |
|
355 | class MADWriter(Operation): | |
| 356 | '''Writing module for Madrigal files |
|
356 | '''Writing module for Madrigal files | |
| 357 |
|
357 | |||
| 358 | type: external |
|
358 | type: external | |
| 359 |
|
359 | |||
| 360 | Inputs: |
|
360 | Inputs: | |
| 361 | path path where files will be created |
|
361 | path path where files will be created | |
| 362 | oneDDict json of one-dimensional parameters in record where keys |
|
362 | oneDDict json of one-dimensional parameters in record where keys | |
| 363 | are Madrigal codes (integers or mnemonics) and values the corresponding |
|
363 | are Madrigal codes (integers or mnemonics) and values the corresponding | |
| 364 | dataOut attribute e.g: { |
|
364 | dataOut attribute e.g: { | |
| 365 | 'gdlatr': 'lat', |
|
365 | 'gdlatr': 'lat', | |
| 366 | 'gdlonr': 'lon', |
|
366 | 'gdlonr': 'lon', | |
| 367 | 'gdlat2':'lat', |
|
367 | 'gdlat2':'lat', | |
| 368 | 'glon2':'lon'} |
|
368 | 'glon2':'lon'} | |
| 369 | ind2DList list of independent spatial two-dimensional parameters e.g: |
|
369 | ind2DList list of independent spatial two-dimensional parameters e.g: | |
| 370 | ['heigthList'] |
|
370 | ['heigthList'] | |
| 371 | twoDDict json of two-dimensional parameters in record where keys |
|
371 | twoDDict json of two-dimensional parameters in record where keys | |
| 372 | are Madrigal codes (integers or mnemonics) and values the corresponding |
|
372 | are Madrigal codes (integers or mnemonics) and values the corresponding | |
| 373 | dataOut attribute if multidimensional array specify as tupple |
|
373 | dataOut attribute if multidimensional array specify as tupple | |
| 374 | ('attr', pos) e.g: { |
|
374 | ('attr', pos) e.g: { | |
| 375 | 'gdalt': 'heightList', |
|
375 | 'gdalt': 'heightList', | |
| 376 | 'vn1p2': ('data_output', 0), |
|
376 | 'vn1p2': ('data_output', 0), | |
| 377 | 'vn2p2': ('data_output', 1), |
|
377 | 'vn2p2': ('data_output', 1), | |
| 378 | 'vn3': ('data_output', 2), |
|
378 | 'vn3': ('data_output', 2), | |
| 379 | 'snl': ('data_SNR', 'db') |
|
379 | 'snl': ('data_SNR', 'db') | |
| 380 | } |
|
380 | } | |
| 381 | metadata json of madrigal metadata (kinst, kindat, catalog and header) |
|
381 | metadata json of madrigal metadata (kinst, kindat, catalog and header) | |
| 382 | format hdf5, cedar |
|
382 | format hdf5, cedar | |
| 383 | blocks number of blocks per file''' |
|
383 | blocks number of blocks per file''' | |
| 384 |
|
384 | |||
| 385 | __attrs__ = ['path', 'oneDDict', 'ind2DList', 'twoDDict','metadata', 'format', 'blocks'] |
|
385 | __attrs__ = ['path', 'oneDDict', 'ind2DList', 'twoDDict','metadata', 'format', 'blocks'] | |
| 386 | missing = -32767 |
|
386 | missing = -32767 | |
| 387 |
|
387 | |||
| 388 | def __init__(self): |
|
388 | def __init__(self): | |
| 389 |
|
389 | |||
| 390 | Operation.__init__(self) |
|
390 | Operation.__init__(self) | |
| 391 | self.dataOut = Parameters() |
|
391 | self.dataOut = Parameters() | |
| 392 | self.counter = 0 |
|
392 | self.counter = 0 | |
| 393 | self.path = None |
|
393 | self.path = None | |
| 394 | self.fp = None |
|
394 | self.fp = None | |
| 395 |
|
395 | |||
| 396 | def run(self, dataOut, path, oneDDict, ind2DList='[]', twoDDict='{}', |
|
396 | def run(self, dataOut, path, oneDDict, ind2DList='[]', twoDDict='{}', | |
| 397 | metadata='{}', format='cedar', **kwargs): |
|
397 | metadata='{}', format='cedar', **kwargs): | |
| 398 |
|
398 | |||
|
|
399 | ||||
|
|
400 | #if dataOut.AUX==1: #Modified | |||
|
|
401 | ||||
| 399 | if not self.isConfig: |
|
402 | if not self.isConfig: | |
| 400 | self.setup(path, oneDDict, ind2DList, twoDDict, metadata, format, **kwargs) |
|
403 | self.setup(path, oneDDict, ind2DList, twoDDict, metadata, format, **kwargs) | |
| 401 | self.isConfig = True |
|
404 | self.isConfig = True | |
| 402 |
|
405 | |||
| 403 |
self.dataOut = dataOut |
|
406 | self.dataOut = dataOut | |
| 404 |
self.putData() |
|
407 | self.putData() | |
|
|
408 | ||||
| 405 | return 1 |
|
409 | return 1 | |
| 406 |
|
410 | |||
| 407 | def setup(self, path, oneDDict, ind2DList, twoDDict, metadata, format, **kwargs): |
|
411 | def setup(self, path, oneDDict, ind2DList, twoDDict, metadata, format, **kwargs): | |
| 408 | ''' |
|
412 | ''' | |
| 409 |
Configure Operation |
|
413 | Configure Operation | |
| 410 | ''' |
|
414 | ''' | |
| 411 |
|
415 | |||
| 412 | self.path = path |
|
416 | self.path = path | |
| 413 | self.blocks = kwargs.get('blocks', None) |
|
417 | self.blocks = kwargs.get('blocks', None) | |
| 414 | self.counter = 0 |
|
418 | self.counter = 0 | |
| 415 | self.oneDDict = load_json(oneDDict) |
|
419 | self.oneDDict = load_json(oneDDict) | |
| 416 | self.twoDDict = load_json(twoDDict) |
|
420 | self.twoDDict = load_json(twoDDict) | |
| 417 | self.ind2DList = load_json(ind2DList) |
|
421 | self.ind2DList = load_json(ind2DList) | |
| 418 |
meta = load_json(metadata) |
|
422 | meta = load_json(metadata) | |
| 419 | self.kinst = meta.get('kinst') |
|
423 | self.kinst = meta.get('kinst') | |
| 420 | self.kindat = meta.get('kindat') |
|
424 | self.kindat = meta.get('kindat') | |
| 421 | self.catalog = meta.get('catalog', DEF_CATALOG) |
|
425 | self.catalog = meta.get('catalog', DEF_CATALOG) | |
| 422 | self.header = meta.get('header', DEF_HEADER) |
|
426 | self.header = meta.get('header', DEF_HEADER) | |
| 423 | if format == 'cedar': |
|
427 | if format == 'cedar': | |
| 424 | self.ext = '.dat' |
|
428 | self.ext = '.dat' | |
| 425 | self.extra_args = {} |
|
429 | self.extra_args = {} | |
| 426 | elif format == 'hdf5': |
|
430 | elif format == 'hdf5': | |
| 427 | self.ext = '.hdf5' |
|
431 | self.ext = '.hdf5' | |
| 428 | self.extra_args = {'ind2DList': self.ind2DList} |
|
432 | self.extra_args = {'ind2DList': self.ind2DList} | |
| 429 |
|
433 | |||
| 430 |
self.keys = [k.lower() for k in self.twoDDict] |
|
434 | self.keys = [k.lower() for k in self.twoDDict] | |
| 431 | if 'range' in self.keys: |
|
435 | if 'range' in self.keys: | |
| 432 | self.keys.remove('range') |
|
436 | self.keys.remove('range') | |
| 433 | if 'gdalt' in self.keys: |
|
437 | if 'gdalt' in self.keys: | |
| 434 | self.keys.remove('gdalt') |
|
438 | self.keys.remove('gdalt') | |
| 435 |
|
439 | |||
| 436 | def setFile(self): |
|
440 | def setFile(self): | |
| 437 | ''' |
|
441 | ''' | |
| 438 | Create new cedar file object |
|
442 | Create new cedar file object | |
| 439 | ''' |
|
443 | ''' | |
| 440 |
|
444 | |||
| 441 | self.mnemonic = MNEMONICS[self.kinst] #TODO get mnemonic from madrigal |
|
445 | self.mnemonic = MNEMONICS[self.kinst] #TODO get mnemonic from madrigal | |
| 442 | date = datetime.datetime.utcfromtimestamp(self.dataOut.utctime) |
|
446 | date = datetime.datetime.utcfromtimestamp(self.dataOut.utctime) | |
|
|
447 | #if self.dataOut.input_dat_type: | |||
|
|
448 | #date=datetime.datetime.fromtimestamp(self.dataOut.TimeBlockSeconds_for_dp_power) | |||
|
|
449 | #print("date",date) | |||
| 443 |
|
450 | |||
| 444 | filename = '{}{}{}'.format(self.mnemonic, |
|
451 | filename = '{}{}{}'.format(self.mnemonic, | |
| 445 | date.strftime('%Y%m%d_%H%M%S'), |
|
452 | date.strftime('%Y%m%d_%H%M%S'), | |
| 446 | self.ext) |
|
453 | self.ext) | |
| 447 |
|
454 | |||
| 448 | self.fullname = os.path.join(self.path, filename) |
|
455 | self.fullname = os.path.join(self.path, filename) | |
| 449 |
|
456 | |||
| 450 |
if os.path.isfile(self.fullname) : |
|
457 | if os.path.isfile(self.fullname) : | |
| 451 | log.warning( |
|
458 | log.warning( | |
| 452 | 'Destination file {} already exists, previous file deleted.'.format( |
|
459 | 'Destination file {} already exists, previous file deleted.'.format( | |
| 453 | self.fullname), |
|
460 | self.fullname), | |
| 454 | 'MADWriter') |
|
461 | 'MADWriter') | |
| 455 | os.remove(self.fullname) |
|
462 | os.remove(self.fullname) | |
| 456 |
|
463 | |||
| 457 | try: |
|
464 | try: | |
| 458 | log.success( |
|
465 | log.success( | |
| 459 | 'Creating file: {}'.format(self.fullname), |
|
466 | 'Creating file: {}'.format(self.fullname), | |
| 460 | 'MADWriter') |
|
467 | 'MADWriter') | |
| 461 | if not os.path.exists(self.path): |
|
468 | if not os.path.exists(self.path): | |
| 462 | os.makedirs(self.path) |
|
469 | os.makedirs(self.path) | |
| 463 | self.fp = madrigal.cedar.MadrigalCedarFile(self.fullname, True) |
|
470 | self.fp = madrigal.cedar.MadrigalCedarFile(self.fullname, True) | |
|
|
471 | ||||
|
|
472 | ||||
| 464 | except ValueError as e: |
|
473 | except ValueError as e: | |
| 465 | log.error( |
|
474 | log.error( | |
| 466 | 'Impossible to create a cedar object with "madrigal.cedar.MadrigalCedarFile"', |
|
475 | 'Impossible to create a cedar object with "madrigal.cedar.MadrigalCedarFile"', | |
| 467 | 'MADWriter') |
|
476 | 'MADWriter') | |
| 468 | return |
|
477 | return | |
| 469 |
|
478 | |||
| 470 | return 1 |
|
479 | return 1 | |
| 471 |
|
480 | |||
| 472 | def writeBlock(self): |
|
481 | def writeBlock(self): | |
| 473 | ''' |
|
482 | ''' | |
| 474 | Add data records to cedar file taking data from oneDDict and twoDDict |
|
483 | Add data records to cedar file taking data from oneDDict and twoDDict | |
| 475 | attributes. |
|
484 | attributes. | |
| 476 | Allowed parameters in: parcodes.tab |
|
485 | Allowed parameters in: parcodes.tab | |
| 477 | ''' |
|
486 | ''' | |
| 478 |
|
487 | #self.dataOut.paramInterval=2 | ||
| 479 | startTime = datetime.datetime.utcfromtimestamp(self.dataOut.utctime) |
|
488 | startTime = datetime.datetime.utcfromtimestamp(self.dataOut.utctime) | |
|
|
489 | ||||
| 480 | endTime = startTime + datetime.timedelta(seconds=self.dataOut.paramInterval) |
|
490 | endTime = startTime + datetime.timedelta(seconds=self.dataOut.paramInterval) | |
|
|
491 | ||||
|
|
492 | #if self.dataOut.input_dat_type: | |||
|
|
493 | #if self.dataOut.experiment=="DP": | |||
|
|
494 | #startTime=datetime.datetime.fromtimestamp(self.dataOut.TimeBlockSeconds_for_dp_power) | |||
|
|
495 | #endTime = startTime + datetime.timedelta(seconds=self.dataOut.paramInterval) | |||
|
|
496 | ||||
|
|
497 | ||||
|
|
498 | #print("2: ",startTime) | |||
|
|
499 | #print(endTime) | |||
| 481 | heights = self.dataOut.heightList |
|
500 | heights = self.dataOut.heightList | |
| 482 |
|
501 | |||
|
|
502 | #print(self.blocks) | |||
|
|
503 | #print(startTime) | |||
|
|
504 | #print(endTime) | |||
|
|
505 | #print(heights) | |||
|
|
506 | #input() | |||
| 483 | if self.ext == '.dat': |
|
507 | if self.ext == '.dat': | |
| 484 | for key, value in list(self.twoDDict.items()): |
|
508 | for key, value in list(self.twoDDict.items()): | |
| 485 | if isinstance(value, str): |
|
509 | if isinstance(value, str): | |
| 486 | data = getattr(self.dataOut, value) |
|
510 | data = getattr(self.dataOut, value) | |
| 487 | invalid = numpy.isnan(data) |
|
511 | invalid = numpy.isnan(data) | |
| 488 | data[invalid] = self.missing |
|
512 | data[invalid] = self.missing | |
| 489 | elif isinstance(value, (tuple, list)): |
|
513 | elif isinstance(value, (tuple, list)): | |
| 490 | attr, key = value |
|
514 | attr, key = value | |
| 491 | data = getattr(self.dataOut, attr) |
|
515 | data = getattr(self.dataOut, attr) | |
| 492 | invalid = numpy.isnan(data) |
|
516 | invalid = numpy.isnan(data) | |
| 493 | data[invalid] = self.missing |
|
517 | data[invalid] = self.missing | |
| 494 |
|
518 | |||
| 495 | out = {} |
|
519 | out = {} | |
| 496 | for key, value in list(self.twoDDict.items()): |
|
520 | for key, value in list(self.twoDDict.items()): | |
| 497 | key = key.lower() |
|
521 | key = key.lower() | |
| 498 | if isinstance(value, str): |
|
522 | if isinstance(value, str): | |
| 499 | if 'db' in value.lower(): |
|
523 | if 'db' in value.lower(): | |
| 500 | tmp = getattr(self.dataOut, value.replace('_db', '')) |
|
524 | tmp = getattr(self.dataOut, value.replace('_db', '')) | |
| 501 | SNRavg = numpy.average(tmp, axis=0) |
|
525 | SNRavg = numpy.average(tmp, axis=0) | |
| 502 | tmp = 10*numpy.log10(SNRavg) |
|
526 | tmp = 10*numpy.log10(SNRavg) | |
| 503 | else: |
|
527 | else: | |
| 504 | tmp = getattr(self.dataOut, value) |
|
528 | tmp = getattr(self.dataOut, value) | |
| 505 | out[key] = tmp.flatten()[:len(heights)] |
|
529 | out[key] = tmp.flatten()[:len(heights)] | |
| 506 | elif isinstance(value, (tuple, list)): |
|
530 | elif isinstance(value, (tuple, list)): | |
| 507 | attr, x = value |
|
531 | attr, x = value | |
| 508 |
data = getattr(self.dataOut, attr) |
|
532 | data = getattr(self.dataOut, attr) | |
|
|
533 | #print(x) | |||
|
|
534 | #print(len(heights)) | |||
|
|
535 | #print(data[int(x)][:len(heights)]) | |||
|
|
536 | #print(numpy.shape(out)) | |||
|
|
537 | #print(numpy.shape(data)) | |||
|
|
538 | ||||
| 509 | out[key] = data[int(x)][:len(heights)] |
|
539 | out[key] = data[int(x)][:len(heights)] | |
| 510 |
|
540 | |||
| 511 | a = numpy.array([out[k] for k in self.keys]) |
|
541 | a = numpy.array([out[k] for k in self.keys]) | |
|
|
542 | #print(a) | |||
| 512 | nrows = numpy.array([numpy.isnan(a[:, x]).all() for x in range(len(heights))]) |
|
543 | nrows = numpy.array([numpy.isnan(a[:, x]).all() for x in range(len(heights))]) | |
| 513 | index = numpy.where(nrows == False)[0] |
|
544 | index = numpy.where(nrows == False)[0] | |
| 514 |
|
545 | |||
|
|
546 | #print(startTime.minute) | |||
| 515 | rec = madrigal.cedar.MadrigalDataRecord( |
|
547 | rec = madrigal.cedar.MadrigalDataRecord( | |
| 516 | self.kinst, |
|
548 | self.kinst, | |
| 517 | self.kindat, |
|
549 | self.kindat, | |
| 518 | startTime.year, |
|
550 | startTime.year, | |
| 519 | startTime.month, |
|
551 | startTime.month, | |
| 520 | startTime.day, |
|
552 | startTime.day, | |
| 521 | startTime.hour, |
|
553 | startTime.hour, | |
| 522 | startTime.minute, |
|
554 | startTime.minute, | |
| 523 | startTime.second, |
|
555 | startTime.second, | |
| 524 | startTime.microsecond/10000, |
|
556 | startTime.microsecond/10000, | |
| 525 | endTime.year, |
|
557 | endTime.year, | |
| 526 | endTime.month, |
|
558 | endTime.month, | |
| 527 | endTime.day, |
|
559 | endTime.day, | |
| 528 | endTime.hour, |
|
560 | endTime.hour, | |
| 529 | endTime.minute, |
|
561 | endTime.minute, | |
| 530 | endTime.second, |
|
562 | endTime.second, | |
| 531 | endTime.microsecond/10000, |
|
563 | endTime.microsecond/10000, | |
| 532 | list(self.oneDDict.keys()), |
|
564 | list(self.oneDDict.keys()), | |
| 533 | list(self.twoDDict.keys()), |
|
565 | list(self.twoDDict.keys()), | |
| 534 | len(index), |
|
566 | len(index), | |
| 535 | **self.extra_args |
|
567 | **self.extra_args | |
| 536 | ) |
|
568 | ) | |
| 537 |
|
569 | #print("rec",rec) | ||
| 538 |
# Setting 1d values |
|
570 | # Setting 1d values | |
| 539 | for key in self.oneDDict: |
|
571 | for key in self.oneDDict: | |
| 540 | rec.set1D(key, getattr(self.dataOut, self.oneDDict[key])) |
|
572 | rec.set1D(key, getattr(self.dataOut, self.oneDDict[key])) | |
| 541 |
|
573 | |||
| 542 | # Setting 2d values |
|
574 | # Setting 2d values | |
| 543 | nrec = 0 |
|
575 | nrec = 0 | |
| 544 |
for n in index: |
|
576 | for n in index: | |
| 545 | for key in out: |
|
577 | for key in out: | |
| 546 | rec.set2D(key, nrec, out[key][n]) |
|
578 | rec.set2D(key, nrec, out[key][n]) | |
| 547 |
nrec += 1 |
|
579 | nrec += 1 | |
| 548 |
|
580 | |||
| 549 | self.fp.append(rec) |
|
581 | self.fp.append(rec) | |
| 550 |
if self.ext == '.hdf5' and self.counter % |
|
582 | if self.ext == '.hdf5' and self.counter %2 == 0 and self.counter > 0: | |
|
|
583 | #print("here") | |||
| 551 | self.fp.dump() |
|
584 | self.fp.dump() | |
| 552 | if self.counter % 20 == 0 and self.counter > 0: |
|
585 | if self.counter % 20 == 0 and self.counter > 0: | |
|
|
586 | #self.fp.write() | |||
| 553 | log.log( |
|
587 | log.log( | |
| 554 | 'Writing {} records'.format( |
|
588 | 'Writing {} records'.format( | |
| 555 | self.counter), |
|
589 | self.counter), | |
| 556 | 'MADWriter') |
|
590 | 'MADWriter') | |
| 557 |
|
591 | |||
| 558 | def setHeader(self): |
|
592 | def setHeader(self): | |
| 559 | ''' |
|
593 | ''' | |
| 560 | Create an add catalog and header to cedar file |
|
594 | Create an add catalog and header to cedar file | |
| 561 |
''' |
|
595 | ''' | |
| 562 |
|
596 | |||
| 563 | log.success('Closing file {}'.format(self.fullname), 'MADWriter') |
|
597 | log.success('Closing file {}'.format(self.fullname), 'MADWriter') | |
| 564 |
|
598 | |||
| 565 | if self.ext == '.dat': |
|
599 | if self.ext == '.dat': | |
| 566 | self.fp.write() |
|
600 | self.fp.write() | |
| 567 | else: |
|
601 | else: | |
| 568 | self.fp.dump() |
|
602 | self.fp.dump() | |
| 569 | self.fp.close() |
|
603 | self.fp.close() | |
| 570 |
|
604 | |||
| 571 |
header = madrigal.cedar.CatalogHeaderCreator(self.fullname) |
|
605 | header = madrigal.cedar.CatalogHeaderCreator(self.fullname) | |
| 572 | header.createCatalog(**self.catalog) |
|
606 | header.createCatalog(**self.catalog) | |
| 573 | header.createHeader(**self.header) |
|
607 | header.createHeader(**self.header) | |
| 574 | header.write() |
|
608 | header.write() | |
| 575 |
|
609 | |||
| 576 | def putData(self): |
|
610 | def putData(self): | |
| 577 |
|
611 | |||
| 578 | if self.dataOut.flagNoData: |
|
612 | if self.dataOut.flagNoData: | |
| 579 |
return 0 |
|
613 | return 0 | |
| 580 |
|
614 | |||
| 581 | if self.dataOut.flagDiscontinuousBlock or self.counter == self.blocks: |
|
615 | if self.dataOut.flagDiscontinuousBlock or self.counter == self.blocks: | |
| 582 | if self.counter > 0: |
|
616 | if self.counter > 0: | |
| 583 | self.setHeader() |
|
617 | self.setHeader() | |
| 584 | self.counter = 0 |
|
618 | self.counter = 0 | |
| 585 |
|
619 | |||
| 586 | if self.counter == 0: |
|
620 | if self.counter == 0: | |
| 587 | self.setFile() |
|
621 | self.setFile() | |
| 588 |
|
622 | |||
| 589 | self.writeBlock() |
|
623 | self.writeBlock() | |
| 590 |
self.counter += 1 |
|
624 | self.counter += 1 | |
| 591 |
|
625 | |||
| 592 | def close(self): |
|
626 | def close(self): | |
| 593 |
|
627 | |||
| 594 |
if self.counter > 0: |
|
628 | if self.counter > 0: | |
| 595 | self.setHeader() No newline at end of file |
|
629 | self.setHeader() | |
| @@ -1,626 +1,626 | |||||
| 1 | import os |
|
1 | import os | |
| 2 | import time |
|
2 | import time | |
| 3 | import datetime |
|
3 | import datetime | |
| 4 |
|
4 | |||
| 5 | import numpy |
|
5 | import numpy | |
| 6 | import h5py |
|
6 | import h5py | |
| 7 |
|
7 | |||
| 8 | import schainpy.admin |
|
8 | import schainpy.admin | |
| 9 | from schainpy.model.data.jrodata import * |
|
9 | from schainpy.model.data.jrodata import * | |
| 10 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator |
|
10 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator | |
| 11 | from schainpy.model.io.jroIO_base import * |
|
11 | from schainpy.model.io.jroIO_base import * | |
| 12 | from schainpy.utils import log |
|
12 | from schainpy.utils import log | |
| 13 |
|
13 | |||
| 14 |
|
14 | |||
| 15 | class HDFReader(Reader, ProcessingUnit): |
|
15 | class HDFReader(Reader, ProcessingUnit): | |
| 16 | """Processing unit to read HDF5 format files |
|
16 | """Processing unit to read HDF5 format files | |
| 17 |
|
17 | |||
| 18 | This unit reads HDF5 files created with `HDFWriter` operation contains |
|
18 | This unit reads HDF5 files created with `HDFWriter` operation contains | |
| 19 | by default two groups Data and Metadata all variables would be saved as `dataOut` |
|
19 | by default two groups Data and Metadata all variables would be saved as `dataOut` | |
| 20 |
attributes. |
|
20 | attributes. | |
| 21 | It is possible to read any HDF5 file by given the structure in the `description` |
|
21 | It is possible to read any HDF5 file by given the structure in the `description` | |
| 22 | parameter, also you can add extra values to metadata with the parameter `extras`. |
|
22 | parameter, also you can add extra values to metadata with the parameter `extras`. | |
| 23 |
|
23 | |||
| 24 | Parameters: |
|
24 | Parameters: | |
| 25 | ----------- |
|
25 | ----------- | |
| 26 | path : str |
|
26 | path : str | |
| 27 | Path where files are located. |
|
27 | Path where files are located. | |
| 28 | startDate : date |
|
28 | startDate : date | |
| 29 | Start date of the files |
|
29 | Start date of the files | |
| 30 | endDate : list |
|
30 | endDate : list | |
| 31 | End date of the files |
|
31 | End date of the files | |
| 32 | startTime : time |
|
32 | startTime : time | |
| 33 | Start time of the files |
|
33 | Start time of the files | |
| 34 | endTime : time |
|
34 | endTime : time | |
| 35 | End time of the files |
|
35 | End time of the files | |
| 36 | description : dict, optional |
|
36 | description : dict, optional | |
| 37 | Dictionary with the description of the HDF5 file |
|
37 | Dictionary with the description of the HDF5 file | |
| 38 | extras : dict, optional |
|
38 | extras : dict, optional | |
| 39 | Dictionary with extra metadata to be be added to `dataOut` |
|
39 | Dictionary with extra metadata to be be added to `dataOut` | |
| 40 |
|
40 | |||
| 41 | Examples |
|
41 | Examples | |
| 42 | -------- |
|
42 | -------- | |
| 43 |
|
43 | |||
| 44 | desc = { |
|
44 | desc = { | |
| 45 | 'Data': { |
|
45 | 'Data': { | |
| 46 | 'data_output': ['u', 'v', 'w'], |
|
46 | 'data_output': ['u', 'v', 'w'], | |
| 47 | 'utctime': 'timestamps', |
|
47 | 'utctime': 'timestamps', | |
| 48 | } , |
|
48 | } , | |
| 49 | 'Metadata': { |
|
49 | 'Metadata': { | |
| 50 | 'heightList': 'heights' |
|
50 | 'heightList': 'heights' | |
| 51 | } |
|
51 | } | |
| 52 | } |
|
52 | } | |
| 53 |
|
53 | |||
| 54 | desc = { |
|
54 | desc = { | |
| 55 | 'Data': { |
|
55 | 'Data': { | |
| 56 | 'data_output': 'winds', |
|
56 | 'data_output': 'winds', | |
| 57 | 'utctime': 'timestamps' |
|
57 | 'utctime': 'timestamps' | |
| 58 | }, |
|
58 | }, | |
| 59 | 'Metadata': { |
|
59 | 'Metadata': { | |
| 60 | 'heightList': 'heights' |
|
60 | 'heightList': 'heights' | |
| 61 | } |
|
61 | } | |
| 62 | } |
|
62 | } | |
| 63 |
|
63 | |||
| 64 | extras = { |
|
64 | extras = { | |
| 65 | 'timeZone': 300 |
|
65 | 'timeZone': 300 | |
| 66 | } |
|
66 | } | |
| 67 |
|
67 | |||
| 68 | reader = project.addReadUnit( |
|
68 | reader = project.addReadUnit( | |
| 69 | name='HDFReader', |
|
69 | name='HDFReader', | |
| 70 | path='/path/to/files', |
|
70 | path='/path/to/files', | |
| 71 | startDate='2019/01/01', |
|
71 | startDate='2019/01/01', | |
| 72 | endDate='2019/01/31', |
|
72 | endDate='2019/01/31', | |
| 73 | startTime='00:00:00', |
|
73 | startTime='00:00:00', | |
| 74 | endTime='23:59:59', |
|
74 | endTime='23:59:59', | |
| 75 | # description=json.dumps(desc), |
|
75 | # description=json.dumps(desc), | |
| 76 | # extras=json.dumps(extras), |
|
76 | # extras=json.dumps(extras), | |
| 77 | ) |
|
77 | ) | |
| 78 |
|
78 | |||
| 79 | """ |
|
79 | """ | |
| 80 |
|
80 | |||
| 81 | __attrs__ = ['path', 'startDate', 'endDate', 'startTime', 'endTime', 'description', 'extras'] |
|
81 | __attrs__ = ['path', 'startDate', 'endDate', 'startTime', 'endTime', 'description', 'extras'] | |
| 82 |
|
82 | |||
| 83 | def __init__(self): |
|
83 | def __init__(self): | |
| 84 | ProcessingUnit.__init__(self) |
|
84 | ProcessingUnit.__init__(self) | |
| 85 | self.dataOut = Parameters() |
|
85 | self.dataOut = Parameters() | |
| 86 | self.ext = ".hdf5" |
|
86 | self.ext = ".hdf5" | |
| 87 | self.optchar = "D" |
|
87 | self.optchar = "D" | |
| 88 | self.meta = {} |
|
88 | self.meta = {} | |
| 89 | self.data = {} |
|
89 | self.data = {} | |
| 90 | self.open_file = h5py.File |
|
90 | self.open_file = h5py.File | |
| 91 | self.open_mode = 'r' |
|
91 | self.open_mode = 'r' | |
| 92 | self.description = {} |
|
92 | self.description = {} | |
| 93 | self.extras = {} |
|
93 | self.extras = {} | |
| 94 | self.filefmt = "*%Y%j***" |
|
94 | self.filefmt = "*%Y%j***" | |
| 95 | self.folderfmt = "*%Y%j" |
|
95 | self.folderfmt = "*%Y%j" | |
| 96 | self.utcoffset = 0 |
|
96 | self.utcoffset = 0 | |
| 97 |
|
97 | |||
| 98 | def setup(self, **kwargs): |
|
98 | def setup(self, **kwargs): | |
| 99 |
|
99 | |||
| 100 | self.set_kwargs(**kwargs) |
|
100 | self.set_kwargs(**kwargs) | |
| 101 | if not self.ext.startswith('.'): |
|
101 | if not self.ext.startswith('.'): | |
| 102 |
self.ext = '.{}'.format(self.ext) |
|
102 | self.ext = '.{}'.format(self.ext) | |
| 103 |
|
103 | |||
| 104 | if self.online: |
|
104 | if self.online: | |
| 105 | log.log("Searching files in online mode...", self.name) |
|
105 | log.log("Searching files in online mode...", self.name) | |
| 106 |
|
106 | |||
| 107 | for nTries in range(self.nTries): |
|
107 | for nTries in range(self.nTries): | |
| 108 | fullpath = self.searchFilesOnLine(self.path, self.startDate, |
|
108 | fullpath = self.searchFilesOnLine(self.path, self.startDate, | |
| 109 |
self.endDate, self.expLabel, self.ext, self.walk, |
|
109 | self.endDate, self.expLabel, self.ext, self.walk, | |
| 110 | self.filefmt, self.folderfmt) |
|
110 | self.filefmt, self.folderfmt) | |
| 111 | try: |
|
111 | try: | |
| 112 | fullpath = next(fullpath) |
|
112 | fullpath = next(fullpath) | |
| 113 | except: |
|
113 | except: | |
| 114 | fullpath = None |
|
114 | fullpath = None | |
| 115 |
|
115 | |||
| 116 | if fullpath: |
|
116 | if fullpath: | |
| 117 | break |
|
117 | break | |
| 118 |
|
118 | |||
| 119 | log.warning( |
|
119 | log.warning( | |
| 120 | 'Waiting {} sec for a valid file in {}: try {} ...'.format( |
|
120 | 'Waiting {} sec for a valid file in {}: try {} ...'.format( | |
| 121 |
self.delay, self.path, nTries + 1), |
|
121 | self.delay, self.path, nTries + 1), | |
| 122 | self.name) |
|
122 | self.name) | |
| 123 | time.sleep(self.delay) |
|
123 | time.sleep(self.delay) | |
| 124 |
|
124 | |||
| 125 | if not(fullpath): |
|
125 | if not(fullpath): | |
| 126 | raise schainpy.admin.SchainError( |
|
126 | raise schainpy.admin.SchainError( | |
| 127 |
'There isn\'t any valid file in {}'.format(self.path)) |
|
127 | 'There isn\'t any valid file in {}'.format(self.path)) | |
| 128 |
|
128 | |||
| 129 | pathname, filename = os.path.split(fullpath) |
|
129 | pathname, filename = os.path.split(fullpath) | |
| 130 | self.year = int(filename[1:5]) |
|
130 | self.year = int(filename[1:5]) | |
| 131 | self.doy = int(filename[5:8]) |
|
131 | self.doy = int(filename[5:8]) | |
| 132 |
self.set = int(filename[8:11]) - 1 |
|
132 | self.set = int(filename[8:11]) - 1 | |
| 133 | else: |
|
133 | else: | |
| 134 | log.log("Searching files in {}".format(self.path), self.name) |
|
134 | log.log("Searching files in {}".format(self.path), self.name) | |
| 135 |
self.filenameList = self.searchFilesOffLine(self.path, self.startDate, |
|
135 | self.filenameList = self.searchFilesOffLine(self.path, self.startDate, | |
| 136 | self.endDate, self.expLabel, self.ext, self.walk, self.filefmt, self.folderfmt) |
|
136 | self.endDate, self.expLabel, self.ext, self.walk, self.filefmt, self.folderfmt) | |
| 137 |
|
137 | |||
| 138 | self.setNextFile() |
|
138 | self.setNextFile() | |
| 139 |
|
139 | |||
| 140 | return |
|
140 | return | |
| 141 |
|
141 | |||
| 142 | def readFirstHeader(self): |
|
142 | def readFirstHeader(self): | |
| 143 | '''Read metadata and data''' |
|
143 | '''Read metadata and data''' | |
| 144 |
|
144 | |||
| 145 |
self.__readMetadata() |
|
145 | self.__readMetadata() | |
| 146 | self.__readData() |
|
146 | self.__readData() | |
| 147 | self.__setBlockList() |
|
147 | self.__setBlockList() | |
| 148 |
|
148 | |||
| 149 | if 'type' in self.meta: |
|
149 | if 'type' in self.meta: | |
| 150 | self.dataOut = eval(self.meta['type'])() |
|
150 | self.dataOut = eval(self.meta['type'])() | |
| 151 |
|
151 | |||
| 152 | for attr in self.meta: |
|
152 | for attr in self.meta: | |
| 153 | setattr(self.dataOut, attr, self.meta[attr]) |
|
153 | setattr(self.dataOut, attr, self.meta[attr]) | |
| 154 |
|
154 | |||
| 155 | self.blockIndex = 0 |
|
155 | self.blockIndex = 0 | |
| 156 |
|
156 | |||
| 157 | return |
|
157 | return | |
| 158 |
|
158 | |||
| 159 | def __setBlockList(self): |
|
159 | def __setBlockList(self): | |
| 160 | ''' |
|
160 | ''' | |
| 161 | Selects the data within the times defined |
|
161 | Selects the data within the times defined | |
| 162 |
|
162 | |||
| 163 | self.fp |
|
163 | self.fp | |
| 164 | self.startTime |
|
164 | self.startTime | |
| 165 | self.endTime |
|
165 | self.endTime | |
| 166 | self.blockList |
|
166 | self.blockList | |
| 167 | self.blocksPerFile |
|
167 | self.blocksPerFile | |
| 168 |
|
168 | |||
| 169 | ''' |
|
169 | ''' | |
| 170 |
|
170 | |||
| 171 | startTime = self.startTime |
|
171 | startTime = self.startTime | |
| 172 | endTime = self.endTime |
|
172 | endTime = self.endTime | |
| 173 | thisUtcTime = self.data['utctime'] + self.utcoffset |
|
173 | thisUtcTime = self.data['utctime'] + self.utcoffset | |
| 174 | self.interval = numpy.min(thisUtcTime[1:] - thisUtcTime[:-1]) |
|
174 | self.interval = numpy.min(thisUtcTime[1:] - thisUtcTime[:-1]) | |
| 175 | thisDatetime = datetime.datetime.utcfromtimestamp(thisUtcTime[0]) |
|
175 | thisDatetime = datetime.datetime.utcfromtimestamp(thisUtcTime[0]) | |
| 176 |
|
176 | |||
| 177 | thisDate = thisDatetime.date() |
|
177 | thisDate = thisDatetime.date() | |
| 178 | thisTime = thisDatetime.time() |
|
178 | thisTime = thisDatetime.time() | |
| 179 |
|
179 | |||
| 180 | startUtcTime = (datetime.datetime.combine(thisDate, startTime) - datetime.datetime(1970, 1, 1)).total_seconds() |
|
180 | startUtcTime = (datetime.datetime.combine(thisDate, startTime) - datetime.datetime(1970, 1, 1)).total_seconds() | |
| 181 | endUtcTime = (datetime.datetime.combine(thisDate, endTime) - datetime.datetime(1970, 1, 1)).total_seconds() |
|
181 | endUtcTime = (datetime.datetime.combine(thisDate, endTime) - datetime.datetime(1970, 1, 1)).total_seconds() | |
| 182 |
|
182 | |||
| 183 | ind = numpy.where(numpy.logical_and(thisUtcTime >= startUtcTime, thisUtcTime < endUtcTime))[0] |
|
183 | ind = numpy.where(numpy.logical_and(thisUtcTime >= startUtcTime, thisUtcTime < endUtcTime))[0] | |
| 184 |
|
184 | |||
| 185 | self.blockList = ind |
|
185 | self.blockList = ind | |
| 186 | self.blocksPerFile = len(ind) |
|
186 | self.blocksPerFile = len(ind) | |
| 187 | return |
|
187 | return | |
| 188 |
|
188 | |||
| 189 | def __readMetadata(self): |
|
189 | def __readMetadata(self): | |
| 190 | ''' |
|
190 | ''' | |
| 191 | Reads Metadata |
|
191 | Reads Metadata | |
| 192 | ''' |
|
192 | ''' | |
| 193 |
|
193 | |||
| 194 | meta = {} |
|
194 | meta = {} | |
| 195 |
|
195 | |||
| 196 | if self.description: |
|
196 | if self.description: | |
| 197 | for key, value in self.description['Metadata'].items(): |
|
197 | for key, value in self.description['Metadata'].items(): | |
| 198 | meta[key] = self.fp[value][()] |
|
198 | meta[key] = self.fp[value][()] | |
| 199 | else: |
|
199 | else: | |
| 200 | grp = self.fp['Metadata'] |
|
200 | grp = self.fp['Metadata'] | |
| 201 | for name in grp: |
|
201 | for name in grp: | |
| 202 | meta[name] = grp[name][()] |
|
202 | meta[name] = grp[name][()] | |
| 203 |
|
203 | |||
| 204 | if self.extras: |
|
204 | if self.extras: | |
| 205 | for key, value in self.extras.items(): |
|
205 | for key, value in self.extras.items(): | |
| 206 | meta[key] = value |
|
206 | meta[key] = value | |
| 207 | self.meta = meta |
|
207 | self.meta = meta | |
| 208 |
|
208 | |||
| 209 | return |
|
209 | return | |
| 210 |
|
210 | |||
| 211 | def __readData(self): |
|
211 | def __readData(self): | |
| 212 |
|
212 | |||
| 213 | data = {} |
|
213 | data = {} | |
| 214 |
|
214 | |||
| 215 | if self.description: |
|
215 | if self.description: | |
| 216 | for key, value in self.description['Data'].items(): |
|
216 | for key, value in self.description['Data'].items(): | |
| 217 | if isinstance(value, str): |
|
217 | if isinstance(value, str): | |
| 218 | if isinstance(self.fp[value], h5py.Dataset): |
|
218 | if isinstance(self.fp[value], h5py.Dataset): | |
| 219 | data[key] = self.fp[value][()] |
|
219 | data[key] = self.fp[value][()] | |
| 220 | elif isinstance(self.fp[value], h5py.Group): |
|
220 | elif isinstance(self.fp[value], h5py.Group): | |
| 221 | array = [] |
|
221 | array = [] | |
| 222 | for ch in self.fp[value]: |
|
222 | for ch in self.fp[value]: | |
| 223 | array.append(self.fp[value][ch][()]) |
|
223 | array.append(self.fp[value][ch][()]) | |
| 224 | data[key] = numpy.array(array) |
|
224 | data[key] = numpy.array(array) | |
| 225 | elif isinstance(value, list): |
|
225 | elif isinstance(value, list): | |
| 226 | array = [] |
|
226 | array = [] | |
| 227 | for ch in value: |
|
227 | for ch in value: | |
| 228 | array.append(self.fp[ch][()]) |
|
228 | array.append(self.fp[ch][()]) | |
| 229 | data[key] = numpy.array(array) |
|
229 | data[key] = numpy.array(array) | |
| 230 | else: |
|
230 | else: | |
| 231 | grp = self.fp['Data'] |
|
231 | grp = self.fp['Data'] | |
| 232 | for name in grp: |
|
232 | for name in grp: | |
| 233 | if isinstance(grp[name], h5py.Dataset): |
|
233 | if isinstance(grp[name], h5py.Dataset): | |
| 234 | array = grp[name][()] |
|
234 | array = grp[name][()] | |
| 235 | elif isinstance(grp[name], h5py.Group): |
|
235 | elif isinstance(grp[name], h5py.Group): | |
| 236 | array = [] |
|
236 | array = [] | |
| 237 | for ch in grp[name]: |
|
237 | for ch in grp[name]: | |
| 238 | array.append(grp[name][ch][()]) |
|
238 | array.append(grp[name][ch][()]) | |
| 239 | array = numpy.array(array) |
|
239 | array = numpy.array(array) | |
| 240 | else: |
|
240 | else: | |
| 241 | log.warning('Unknown type: {}'.format(name)) |
|
241 | log.warning('Unknown type: {}'.format(name)) | |
| 242 |
|
242 | |||
| 243 | if name in self.description: |
|
243 | if name in self.description: | |
| 244 | key = self.description[name] |
|
244 | key = self.description[name] | |
| 245 | else: |
|
245 | else: | |
| 246 | key = name |
|
246 | key = name | |
| 247 | data[key] = array |
|
247 | data[key] = array | |
| 248 |
|
248 | |||
| 249 | self.data = data |
|
249 | self.data = data | |
| 250 | return |
|
250 | return | |
| 251 |
|
251 | |||
| 252 | def getData(self): |
|
252 | def getData(self): | |
| 253 |
|
253 | |||
| 254 | for attr in self.data: |
|
254 | for attr in self.data: | |
| 255 | if self.data[attr].ndim == 1: |
|
255 | if self.data[attr].ndim == 1: | |
| 256 | setattr(self.dataOut, attr, self.data[attr][self.blockIndex]) |
|
256 | setattr(self.dataOut, attr, self.data[attr][self.blockIndex]) | |
| 257 | else: |
|
257 | else: | |
| 258 | setattr(self.dataOut, attr, self.data[attr][:, self.blockIndex]) |
|
258 | setattr(self.dataOut, attr, self.data[attr][:, self.blockIndex]) | |
| 259 |
|
259 | |||
| 260 | self.dataOut.flagNoData = False |
|
260 | self.dataOut.flagNoData = False | |
| 261 | self.blockIndex += 1 |
|
261 | self.blockIndex += 1 | |
| 262 |
|
262 | |||
| 263 | log.log("Block No. {}/{} -> {}".format( |
|
263 | log.log("Block No. {}/{} -> {}".format( | |
| 264 | self.blockIndex, |
|
264 | self.blockIndex, | |
| 265 | self.blocksPerFile, |
|
265 | self.blocksPerFile, | |
| 266 | self.dataOut.datatime.ctime()), self.name) |
|
266 | self.dataOut.datatime.ctime()), self.name) | |
| 267 |
|
267 | |||
| 268 | return |
|
268 | return | |
| 269 |
|
269 | |||
| 270 | def run(self, **kwargs): |
|
270 | def run(self, **kwargs): | |
| 271 |
|
271 | |||
| 272 | if not(self.isConfig): |
|
272 | if not(self.isConfig): | |
| 273 | self.setup(**kwargs) |
|
273 | self.setup(**kwargs) | |
| 274 | self.isConfig = True |
|
274 | self.isConfig = True | |
| 275 |
|
275 | |||
| 276 | if self.blockIndex == self.blocksPerFile: |
|
276 | if self.blockIndex == self.blocksPerFile: | |
| 277 | self.setNextFile() |
|
277 | self.setNextFile() | |
| 278 |
|
278 | |||
| 279 | self.getData() |
|
279 | self.getData() | |
| 280 |
|
280 | |||
| 281 | return |
|
281 | return | |
| 282 |
|
282 | |||
| 283 | @MPDecorator |
|
283 | @MPDecorator | |
| 284 | class HDFWriter(Operation): |
|
284 | class HDFWriter(Operation): | |
| 285 | """Operation to write HDF5 files. |
|
285 | """Operation to write HDF5 files. | |
| 286 |
|
286 | |||
| 287 | The HDF5 file contains by default two groups Data and Metadata where |
|
287 | The HDF5 file contains by default two groups Data and Metadata where | |
| 288 | you can save any `dataOut` attribute specified by `dataList` and `metadataList` |
|
288 | you can save any `dataOut` attribute specified by `dataList` and `metadataList` | |
| 289 | parameters, data attributes are normaly time dependent where the metadata |
|
289 | parameters, data attributes are normaly time dependent where the metadata | |
| 290 |
are not. |
|
290 | are not. | |
| 291 |
It is possible to customize the structure of the HDF5 file with the |
|
291 | It is possible to customize the structure of the HDF5 file with the | |
| 292 | optional description parameter see the examples. |
|
292 | optional description parameter see the examples. | |
| 293 |
|
293 | |||
| 294 | Parameters: |
|
294 | Parameters: | |
| 295 | ----------- |
|
295 | ----------- | |
| 296 | path : str |
|
296 | path : str | |
| 297 | Path where files will be saved. |
|
297 | Path where files will be saved. | |
| 298 | blocksPerFile : int |
|
298 | blocksPerFile : int | |
| 299 | Number of blocks per file |
|
299 | Number of blocks per file | |
| 300 | metadataList : list |
|
300 | metadataList : list | |
| 301 | List of the dataOut attributes that will be saved as metadata |
|
301 | List of the dataOut attributes that will be saved as metadata | |
| 302 | dataList : int |
|
302 | dataList : int | |
| 303 | List of the dataOut attributes that will be saved as data |
|
303 | List of the dataOut attributes that will be saved as data | |
| 304 | setType : bool |
|
304 | setType : bool | |
| 305 | If True the name of the files corresponds to the timestamp of the data |
|
305 | If True the name of the files corresponds to the timestamp of the data | |
| 306 | description : dict, optional |
|
306 | description : dict, optional | |
| 307 | Dictionary with the desired description of the HDF5 file |
|
307 | Dictionary with the desired description of the HDF5 file | |
| 308 |
|
308 | |||
| 309 | Examples |
|
309 | Examples | |
| 310 | -------- |
|
310 | -------- | |
| 311 |
|
311 | |||
| 312 | desc = { |
|
312 | desc = { | |
| 313 | 'data_output': {'winds': ['z', 'w', 'v']}, |
|
313 | 'data_output': {'winds': ['z', 'w', 'v']}, | |
| 314 | 'utctime': 'timestamps', |
|
314 | 'utctime': 'timestamps', | |
| 315 | 'heightList': 'heights' |
|
315 | 'heightList': 'heights' | |
| 316 | } |
|
316 | } | |
| 317 | desc = { |
|
317 | desc = { | |
| 318 | 'data_output': ['z', 'w', 'v'], |
|
318 | 'data_output': ['z', 'w', 'v'], | |
| 319 | 'utctime': 'timestamps', |
|
319 | 'utctime': 'timestamps', | |
| 320 | 'heightList': 'heights' |
|
320 | 'heightList': 'heights' | |
| 321 | } |
|
321 | } | |
| 322 | desc = { |
|
322 | desc = { | |
| 323 | 'Data': { |
|
323 | 'Data': { | |
| 324 | 'data_output': 'winds', |
|
324 | 'data_output': 'winds', | |
| 325 | 'utctime': 'timestamps' |
|
325 | 'utctime': 'timestamps' | |
| 326 | }, |
|
326 | }, | |
| 327 | 'Metadata': { |
|
327 | 'Metadata': { | |
| 328 | 'heightList': 'heights' |
|
328 | 'heightList': 'heights' | |
| 329 | } |
|
329 | } | |
| 330 | } |
|
330 | } | |
| 331 |
|
331 | |||
| 332 | writer = proc_unit.addOperation(name='HDFWriter') |
|
332 | writer = proc_unit.addOperation(name='HDFWriter') | |
| 333 | writer.addParameter(name='path', value='/path/to/file') |
|
333 | writer.addParameter(name='path', value='/path/to/file') | |
| 334 | writer.addParameter(name='blocksPerFile', value='32') |
|
334 | writer.addParameter(name='blocksPerFile', value='32') | |
| 335 | writer.addParameter(name='metadataList', value='heightList,timeZone') |
|
335 | writer.addParameter(name='metadataList', value='heightList,timeZone') | |
| 336 | writer.addParameter(name='dataList',value='data_output,utctime') |
|
336 | writer.addParameter(name='dataList',value='data_output,utctime') | |
| 337 | # writer.addParameter(name='description',value=json.dumps(desc)) |
|
337 | # writer.addParameter(name='description',value=json.dumps(desc)) | |
| 338 |
|
338 | |||
| 339 | """ |
|
339 | """ | |
| 340 |
|
340 | |||
| 341 | ext = ".hdf5" |
|
341 | ext = ".hdf5" | |
| 342 | optchar = "D" |
|
342 | optchar = "D" | |
| 343 | filename = None |
|
343 | filename = None | |
| 344 | path = None |
|
344 | path = None | |
| 345 | setFile = None |
|
345 | setFile = None | |
| 346 | fp = None |
|
346 | fp = None | |
| 347 | firsttime = True |
|
347 | firsttime = True | |
| 348 | #Configurations |
|
348 | #Configurations | |
| 349 | blocksPerFile = None |
|
349 | blocksPerFile = None | |
| 350 | blockIndex = None |
|
350 | blockIndex = None | |
| 351 | dataOut = None |
|
351 | dataOut = None | |
| 352 | #Data Arrays |
|
352 | #Data Arrays | |
| 353 | dataList = None |
|
353 | dataList = None | |
| 354 | metadataList = None |
|
354 | metadataList = None | |
| 355 | currentDay = None |
|
355 | currentDay = None | |
| 356 | lastTime = None |
|
356 | lastTime = None | |
| 357 |
|
357 | |||
| 358 | def __init__(self): |
|
358 | def __init__(self): | |
| 359 |
|
359 | |||
| 360 | Operation.__init__(self) |
|
360 | Operation.__init__(self) | |
| 361 | return |
|
361 | return | |
| 362 |
|
362 | |||
| 363 | def setup(self, path=None, blocksPerFile=10, metadataList=None, dataList=None, setType=None, description=None): |
|
363 | def setup(self, path=None, blocksPerFile=10, metadataList=None, dataList=None, setType=None, description=None): | |
| 364 | self.path = path |
|
364 | self.path = path | |
| 365 | self.blocksPerFile = blocksPerFile |
|
365 | self.blocksPerFile = blocksPerFile | |
| 366 | self.metadataList = metadataList |
|
366 | self.metadataList = metadataList | |
| 367 | self.dataList = [s.strip() for s in dataList] |
|
367 | self.dataList = [s.strip() for s in dataList] | |
| 368 | self.setType = setType |
|
368 | self.setType = setType | |
| 369 | self.description = description |
|
369 | self.description = description | |
| 370 |
|
370 | |||
| 371 | if self.metadataList is None: |
|
371 | if self.metadataList is None: | |
| 372 | self.metadataList = self.dataOut.metadata_list |
|
372 | self.metadataList = self.dataOut.metadata_list | |
| 373 |
|
373 | |||
| 374 | tableList = [] |
|
374 | tableList = [] | |
| 375 | dsList = [] |
|
375 | dsList = [] | |
| 376 |
|
376 | |||
| 377 | for i in range(len(self.dataList)): |
|
377 | for i in range(len(self.dataList)): | |
| 378 | dsDict = {} |
|
378 | dsDict = {} | |
| 379 | if hasattr(self.dataOut, self.dataList[i]): |
|
379 | if hasattr(self.dataOut, self.dataList[i]): | |
| 380 | dataAux = getattr(self.dataOut, self.dataList[i]) |
|
380 | dataAux = getattr(self.dataOut, self.dataList[i]) | |
| 381 | dsDict['variable'] = self.dataList[i] |
|
381 | dsDict['variable'] = self.dataList[i] | |
| 382 | else: |
|
382 | else: | |
| 383 | log.warning('Attribute {} not found in dataOut', self.name) |
|
383 | log.warning('Attribute {} not found in dataOut', self.name) | |
| 384 | continue |
|
384 | continue | |
| 385 |
|
385 | |||
| 386 | if dataAux is None: |
|
386 | if dataAux is None: | |
| 387 | continue |
|
387 | continue | |
| 388 | elif isinstance(dataAux, (int, float, numpy.integer, numpy.float)): |
|
388 | elif isinstance(dataAux, (int, float, numpy.integer, numpy.float)): | |
| 389 | dsDict['nDim'] = 0 |
|
389 | dsDict['nDim'] = 0 | |
| 390 | else: |
|
390 | else: | |
| 391 | dsDict['nDim'] = len(dataAux.shape) |
|
391 | dsDict['nDim'] = len(dataAux.shape) | |
| 392 | dsDict['shape'] = dataAux.shape |
|
392 | dsDict['shape'] = dataAux.shape | |
| 393 | dsDict['dsNumber'] = dataAux.shape[0] |
|
393 | dsDict['dsNumber'] = dataAux.shape[0] | |
| 394 | dsDict['dtype'] = dataAux.dtype |
|
394 | dsDict['dtype'] = dataAux.dtype | |
| 395 |
|
395 | |||
| 396 | dsList.append(dsDict) |
|
396 | dsList.append(dsDict) | |
| 397 |
|
397 | |||
| 398 | self.dsList = dsList |
|
398 | self.dsList = dsList | |
| 399 | self.currentDay = self.dataOut.datatime.date() |
|
399 | self.currentDay = self.dataOut.datatime.date() | |
| 400 |
|
400 | |||
| 401 | def timeFlag(self): |
|
401 | def timeFlag(self): | |
| 402 | currentTime = self.dataOut.utctime |
|
402 | currentTime = self.dataOut.utctime | |
| 403 | timeTuple = time.localtime(currentTime) |
|
403 | timeTuple = time.localtime(currentTime) | |
| 404 | dataDay = timeTuple.tm_yday |
|
404 | dataDay = timeTuple.tm_yday | |
| 405 |
|
405 | |||
| 406 | if self.lastTime is None: |
|
406 | if self.lastTime is None: | |
| 407 | self.lastTime = currentTime |
|
407 | self.lastTime = currentTime | |
| 408 | self.currentDay = dataDay |
|
408 | self.currentDay = dataDay | |
| 409 | return False |
|
409 | return False | |
| 410 |
|
410 | |||
| 411 | timeDiff = currentTime - self.lastTime |
|
411 | timeDiff = currentTime - self.lastTime | |
| 412 |
|
412 | |||
| 413 | #Si el dia es diferente o si la diferencia entre un dato y otro supera la hora |
|
413 | #Si el dia es diferente o si la diferencia entre un dato y otro supera la hora | |
| 414 | if dataDay != self.currentDay: |
|
414 | if dataDay != self.currentDay: | |
| 415 | self.currentDay = dataDay |
|
415 | self.currentDay = dataDay | |
| 416 | return True |
|
416 | return True | |
| 417 | elif timeDiff > 3*60*60: |
|
417 | elif timeDiff > 3*60*60: | |
| 418 | self.lastTime = currentTime |
|
418 | self.lastTime = currentTime | |
| 419 | return True |
|
419 | return True | |
| 420 | else: |
|
420 | else: | |
| 421 | self.lastTime = currentTime |
|
421 | self.lastTime = currentTime | |
| 422 | return False |
|
422 | return False | |
| 423 |
|
423 | |||
| 424 | def run(self, dataOut, path, blocksPerFile=10, metadataList=None, |
|
424 | def run(self, dataOut, path, blocksPerFile=10, metadataList=None, | |
| 425 | dataList=[], setType=None, description={}): |
|
425 | dataList=[], setType=None, description={}): | |
| 426 |
|
426 | |||
| 427 | self.dataOut = dataOut |
|
427 | self.dataOut = dataOut | |
| 428 | if not(self.isConfig): |
|
428 | if not(self.isConfig): | |
| 429 |
self.setup(path=path, blocksPerFile=blocksPerFile, |
|
429 | self.setup(path=path, blocksPerFile=blocksPerFile, | |
| 430 | metadataList=metadataList, dataList=dataList, |
|
430 | metadataList=metadataList, dataList=dataList, | |
| 431 | setType=setType, description=description) |
|
431 | setType=setType, description=description) | |
| 432 |
|
432 | |||
| 433 | self.isConfig = True |
|
433 | self.isConfig = True | |
| 434 | self.setNextFile() |
|
434 | self.setNextFile() | |
| 435 |
|
435 | |||
| 436 | self.putData() |
|
436 | self.putData() | |
| 437 | return |
|
437 | return | |
| 438 |
|
438 | |||
| 439 | def setNextFile(self): |
|
439 | def setNextFile(self): | |
| 440 |
|
440 | |||
| 441 | ext = self.ext |
|
441 | ext = self.ext | |
| 442 | path = self.path |
|
442 | path = self.path | |
| 443 | setFile = self.setFile |
|
443 | setFile = self.setFile | |
| 444 |
|
444 | |||
| 445 | timeTuple = time.localtime(self.dataOut.utctime) |
|
445 | timeTuple = time.localtime(self.dataOut.utctime) | |
| 446 | subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday) |
|
446 | subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday) | |
| 447 | fullpath = os.path.join(path, subfolder) |
|
447 | fullpath = os.path.join(path, subfolder) | |
| 448 |
|
448 | |||
| 449 | if os.path.exists(fullpath): |
|
449 | if os.path.exists(fullpath): | |
| 450 | filesList = os.listdir(fullpath) |
|
450 | filesList = os.listdir(fullpath) | |
| 451 | filesList = [k for k in filesList if k.startswith(self.optchar)] |
|
451 | filesList = [k for k in filesList if k.startswith(self.optchar)] | |
| 452 | if len( filesList ) > 0: |
|
452 | if len( filesList ) > 0: | |
| 453 | filesList = sorted(filesList, key=str.lower) |
|
453 | filesList = sorted(filesList, key=str.lower) | |
| 454 | filen = filesList[-1] |
|
454 | filen = filesList[-1] | |
| 455 | # el filename debera tener el siguiente formato |
|
455 | # el filename debera tener el siguiente formato | |
| 456 | # 0 1234 567 89A BCDE (hex) |
|
456 | # 0 1234 567 89A BCDE (hex) | |
| 457 | # x YYYY DDD SSS .ext |
|
457 | # x YYYY DDD SSS .ext | |
| 458 | if isNumber(filen[8:11]): |
|
458 | if isNumber(filen[8:11]): | |
| 459 | setFile = int(filen[8:11]) #inicializo mi contador de seteo al seteo del ultimo file |
|
459 | setFile = int(filen[8:11]) #inicializo mi contador de seteo al seteo del ultimo file | |
| 460 | else: |
|
460 | else: | |
| 461 | setFile = -1 |
|
461 | setFile = -1 | |
| 462 | else: |
|
462 | else: | |
| 463 | setFile = -1 #inicializo mi contador de seteo |
|
463 | setFile = -1 #inicializo mi contador de seteo | |
| 464 | else: |
|
464 | else: | |
| 465 | os.makedirs(fullpath) |
|
465 | os.makedirs(fullpath) | |
| 466 | setFile = -1 #inicializo mi contador de seteo |
|
466 | setFile = -1 #inicializo mi contador de seteo | |
| 467 |
|
467 | |||
| 468 | if self.setType is None: |
|
468 | if self.setType is None: | |
| 469 | setFile += 1 |
|
469 | setFile += 1 | |
| 470 | file = '%s%4.4d%3.3d%03d%s' % (self.optchar, |
|
470 | file = '%s%4.4d%3.3d%03d%s' % (self.optchar, | |
| 471 | timeTuple.tm_year, |
|
471 | timeTuple.tm_year, | |
| 472 | timeTuple.tm_yday, |
|
472 | timeTuple.tm_yday, | |
| 473 | setFile, |
|
473 | setFile, | |
| 474 | ext ) |
|
474 | ext ) | |
| 475 | else: |
|
475 | else: | |
| 476 | setFile = timeTuple.tm_hour*60+timeTuple.tm_min |
|
476 | setFile = timeTuple.tm_hour*60+timeTuple.tm_min | |
| 477 | file = '%s%4.4d%3.3d%04d%s' % (self.optchar, |
|
477 | file = '%s%4.4d%3.3d%04d%s' % (self.optchar, | |
| 478 | timeTuple.tm_year, |
|
478 | timeTuple.tm_year, | |
| 479 | timeTuple.tm_yday, |
|
479 | timeTuple.tm_yday, | |
| 480 | setFile, |
|
480 | setFile, | |
| 481 | ext ) |
|
481 | ext ) | |
| 482 |
|
482 | |||
| 483 | self.filename = os.path.join( path, subfolder, file ) |
|
483 | self.filename = os.path.join( path, subfolder, file ) | |
| 484 |
|
484 | |||
| 485 | #Setting HDF5 File |
|
485 | #Setting HDF5 File | |
| 486 | self.fp = h5py.File(self.filename, 'w') |
|
486 | self.fp = h5py.File(self.filename, 'w') | |
| 487 | #write metadata |
|
487 | #write metadata | |
| 488 | self.writeMetadata(self.fp) |
|
488 | self.writeMetadata(self.fp) | |
| 489 | #Write data |
|
489 | #Write data | |
| 490 | self.writeData(self.fp) |
|
490 | self.writeData(self.fp) | |
| 491 |
|
491 | |||
| 492 | def getLabel(self, name, x=None): |
|
492 | def getLabel(self, name, x=None): | |
| 493 |
|
493 | |||
| 494 | if x is None: |
|
494 | if x is None: | |
| 495 | if 'Data' in self.description: |
|
495 | if 'Data' in self.description: | |
| 496 | data = self.description['Data'] |
|
496 | data = self.description['Data'] | |
| 497 | if 'Metadata' in self.description: |
|
497 | if 'Metadata' in self.description: | |
| 498 | data.update(self.description['Metadata']) |
|
498 | data.update(self.description['Metadata']) | |
| 499 | else: |
|
499 | else: | |
| 500 | data = self.description |
|
500 | data = self.description | |
| 501 | if name in data: |
|
501 | if name in data: | |
| 502 | if isinstance(data[name], str): |
|
502 | if isinstance(data[name], str): | |
| 503 | return data[name] |
|
503 | return data[name] | |
| 504 | elif isinstance(data[name], list): |
|
504 | elif isinstance(data[name], list): | |
| 505 | return None |
|
505 | return None | |
| 506 | elif isinstance(data[name], dict): |
|
506 | elif isinstance(data[name], dict): | |
| 507 | for key, value in data[name].items(): |
|
507 | for key, value in data[name].items(): | |
| 508 | return key |
|
508 | return key | |
| 509 | return name |
|
509 | return name | |
| 510 | else: |
|
510 | else: | |
| 511 | if 'Metadata' in self.description: |
|
511 | if 'Metadata' in self.description: | |
| 512 | meta = self.description['Metadata'] |
|
512 | meta = self.description['Metadata'] | |
| 513 | else: |
|
513 | else: | |
| 514 | meta = self.description |
|
514 | meta = self.description | |
| 515 | if name in meta: |
|
515 | if name in meta: | |
| 516 | if isinstance(meta[name], list): |
|
516 | if isinstance(meta[name], list): | |
| 517 | return meta[name][x] |
|
517 | return meta[name][x] | |
| 518 | elif isinstance(meta[name], dict): |
|
518 | elif isinstance(meta[name], dict): | |
| 519 | for key, value in meta[name].items(): |
|
519 | for key, value in meta[name].items(): | |
| 520 | return value[x] |
|
520 | return value[x] | |
| 521 | if 'cspc' in name: |
|
521 | if 'cspc' in name: | |
| 522 | return 'pair{:02d}'.format(x) |
|
522 | return 'pair{:02d}'.format(x) | |
| 523 | else: |
|
523 | else: | |
| 524 | return 'channel{:02d}'.format(x) |
|
524 | return 'channel{:02d}'.format(x) | |
| 525 |
|
525 | |||
| 526 | def writeMetadata(self, fp): |
|
526 | def writeMetadata(self, fp): | |
| 527 |
|
527 | |||
| 528 | if self.description: |
|
528 | if self.description: | |
| 529 | if 'Metadata' in self.description: |
|
529 | if 'Metadata' in self.description: | |
| 530 | grp = fp.create_group('Metadata') |
|
530 | grp = fp.create_group('Metadata') | |
| 531 | else: |
|
531 | else: | |
| 532 | grp = fp |
|
532 | grp = fp | |
| 533 | else: |
|
533 | else: | |
| 534 | grp = fp.create_group('Metadata') |
|
534 | grp = fp.create_group('Metadata') | |
| 535 |
|
535 | |||
| 536 | for i in range(len(self.metadataList)): |
|
536 | for i in range(len(self.metadataList)): | |
| 537 | if not hasattr(self.dataOut, self.metadataList[i]): |
|
537 | if not hasattr(self.dataOut, self.metadataList[i]): | |
| 538 | log.warning('Metadata: `{}` not found'.format(self.metadataList[i]), self.name) |
|
538 | log.warning('Metadata: `{}` not found'.format(self.metadataList[i]), self.name) | |
| 539 | continue |
|
539 | continue | |
| 540 | value = getattr(self.dataOut, self.metadataList[i]) |
|
540 | value = getattr(self.dataOut, self.metadataList[i]) | |
| 541 | if isinstance(value, bool): |
|
541 | if isinstance(value, bool): | |
| 542 | if value is True: |
|
542 | if value is True: | |
| 543 | value = 1 |
|
543 | value = 1 | |
| 544 | else: |
|
544 | else: | |
| 545 | value = 0 |
|
545 | value = 0 | |
| 546 | grp.create_dataset(self.getLabel(self.metadataList[i]), data=value) |
|
546 | grp.create_dataset(self.getLabel(self.metadataList[i]), data=value) | |
| 547 | return |
|
547 | return | |
| 548 |
|
548 | |||
| 549 | def writeData(self, fp): |
|
549 | def writeData(self, fp): | |
| 550 |
|
550 | |||
| 551 | if self.description: |
|
551 | if self.description: | |
| 552 | if 'Data' in self.description: |
|
552 | if 'Data' in self.description: | |
| 553 | grp = fp.create_group('Data') |
|
553 | grp = fp.create_group('Data') | |
| 554 | else: |
|
554 | else: | |
| 555 | grp = fp |
|
555 | grp = fp | |
| 556 | else: |
|
556 | else: | |
| 557 | grp = fp.create_group('Data') |
|
557 | grp = fp.create_group('Data') | |
| 558 |
|
558 | |||
| 559 | dtsets = [] |
|
559 | dtsets = [] | |
| 560 | data = [] |
|
560 | data = [] | |
| 561 |
|
561 | |||
| 562 | for dsInfo in self.dsList: |
|
562 | for dsInfo in self.dsList: | |
| 563 | if dsInfo['nDim'] == 0: |
|
563 | if dsInfo['nDim'] == 0: | |
| 564 | ds = grp.create_dataset( |
|
564 | ds = grp.create_dataset( | |
| 565 |
self.getLabel(dsInfo['variable']), |
|
565 | self.getLabel(dsInfo['variable']), | |
| 566 | (self.blocksPerFile, ), |
|
566 | (self.blocksPerFile, ), | |
| 567 |
chunks=True, |
|
567 | chunks=True, | |
| 568 | dtype=numpy.float64) |
|
568 | dtype=numpy.float64) | |
| 569 | dtsets.append(ds) |
|
569 | dtsets.append(ds) | |
| 570 | data.append((dsInfo['variable'], -1)) |
|
570 | data.append((dsInfo['variable'], -1)) | |
| 571 | else: |
|
571 | else: | |
| 572 | label = self.getLabel(dsInfo['variable']) |
|
572 | label = self.getLabel(dsInfo['variable']) | |
| 573 | if label is not None: |
|
573 | if label is not None: | |
| 574 | sgrp = grp.create_group(label) |
|
574 | sgrp = grp.create_group(label) | |
| 575 | else: |
|
575 | else: | |
| 576 | sgrp = grp |
|
576 | sgrp = grp | |
| 577 | for i in range(dsInfo['dsNumber']): |
|
577 | for i in range(dsInfo['dsNumber']): | |
| 578 | ds = sgrp.create_dataset( |
|
578 | ds = sgrp.create_dataset( | |
| 579 |
self.getLabel(dsInfo['variable'], i), |
|
579 | self.getLabel(dsInfo['variable'], i), | |
| 580 | (self.blocksPerFile, ) + dsInfo['shape'][1:], |
|
580 | (self.blocksPerFile, ) + dsInfo['shape'][1:], | |
| 581 | chunks=True, |
|
581 | chunks=True, | |
| 582 | dtype=dsInfo['dtype']) |
|
582 | dtype=dsInfo['dtype']) | |
| 583 | dtsets.append(ds) |
|
583 | dtsets.append(ds) | |
| 584 | data.append((dsInfo['variable'], i)) |
|
584 | data.append((dsInfo['variable'], i)) | |
| 585 | fp.flush() |
|
585 | fp.flush() | |
| 586 |
|
586 | |||
| 587 | log.log('Creating file: {}'.format(fp.filename), self.name) |
|
587 | log.log('Creating file: {}'.format(fp.filename), self.name) | |
| 588 |
|
588 | |||
| 589 | self.ds = dtsets |
|
589 | self.ds = dtsets | |
| 590 | self.data = data |
|
590 | self.data = data | |
| 591 | self.firsttime = True |
|
591 | self.firsttime = True | |
| 592 | self.blockIndex = 0 |
|
592 | self.blockIndex = 0 | |
| 593 | return |
|
593 | return | |
| 594 |
|
594 | |||
| 595 | def putData(self): |
|
595 | def putData(self): | |
| 596 |
|
596 | |||
| 597 | if (self.blockIndex == self.blocksPerFile) or self.timeFlag(): |
|
597 | if (self.blockIndex == self.blocksPerFile) or self.timeFlag(): | |
| 598 | self.closeFile() |
|
598 | self.closeFile() | |
| 599 | self.setNextFile() |
|
599 | self.setNextFile() | |
| 600 |
|
600 | |||
| 601 | for i, ds in enumerate(self.ds): |
|
601 | for i, ds in enumerate(self.ds): | |
| 602 | attr, ch = self.data[i] |
|
602 | attr, ch = self.data[i] | |
| 603 | if ch == -1: |
|
603 | if ch == -1: | |
| 604 | ds[self.blockIndex] = getattr(self.dataOut, attr) |
|
604 | ds[self.blockIndex] = getattr(self.dataOut, attr) | |
| 605 | else: |
|
605 | else: | |
| 606 | ds[self.blockIndex] = getattr(self.dataOut, attr)[ch] |
|
606 | ds[self.blockIndex] = getattr(self.dataOut, attr)[ch] | |
| 607 |
|
607 | |||
| 608 | self.fp.flush() |
|
608 | self.fp.flush() | |
| 609 | self.blockIndex += 1 |
|
609 | self.blockIndex += 1 | |
| 610 | log.log('Block No. {}/{}'.format(self.blockIndex, self.blocksPerFile), self.name) |
|
610 | log.log('Block No. {}/{}'.format(self.blockIndex, self.blocksPerFile), self.name) | |
| 611 |
|
611 | |||
| 612 | return |
|
612 | return | |
| 613 |
|
613 | |||
| 614 | def closeFile(self): |
|
614 | def closeFile(self): | |
| 615 |
|
615 | |||
| 616 | if self.blockIndex != self.blocksPerFile: |
|
616 | if self.blockIndex != self.blocksPerFile: | |
| 617 | for ds in self.ds: |
|
617 | for ds in self.ds: | |
| 618 | ds.resize(self.blockIndex, axis=0) |
|
618 | ds.resize(self.blockIndex, axis=0) | |
| 619 |
|
619 | |||
| 620 | if self.fp: |
|
620 | if self.fp: | |
| 621 | self.fp.flush() |
|
621 | self.fp.flush() | |
| 622 | self.fp.close() |
|
622 | self.fp.close() | |
| 623 |
|
623 | |||
| 624 | def close(self): |
|
624 | def close(self): | |
| 625 |
|
625 | |||
| 626 | self.closeFile() |
|
626 | self.closeFile() | |
| @@ -1,676 +1,692 | |||||
| 1 | ''' |
|
1 | ''' | |
| 2 | Created on Jul 2, 2014 |
|
2 | Created on Jul 2, 2014 | |
| 3 |
|
3 | |||
| 4 | @author: roj-idl71 |
|
4 | @author: roj-idl71 | |
| 5 | ''' |
|
5 | ''' | |
| 6 |
|
6 | |||
| 7 | import numpy |
|
7 | import numpy | |
| 8 |
|
8 | |||
| 9 | from .jroIO_base import LOCALTIME, JRODataReader, JRODataWriter |
|
9 | from .jroIO_base import LOCALTIME, JRODataReader, JRODataWriter | |
| 10 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator |
|
10 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator | |
| 11 | from schainpy.model.data.jroheaderIO import PROCFLAG, BasicHeader, SystemHeader, RadarControllerHeader, ProcessingHeader |
|
11 | from schainpy.model.data.jroheaderIO import PROCFLAG, BasicHeader, SystemHeader, RadarControllerHeader, ProcessingHeader | |
| 12 | from schainpy.model.data.jrodata import Voltage |
|
12 | from schainpy.model.data.jrodata import Voltage | |
| 13 |
|
13 | |||
| 14 |
|
14 | |||
| 15 | class VoltageReader(JRODataReader, ProcessingUnit): |
|
15 | class VoltageReader(JRODataReader, ProcessingUnit): | |
| 16 | """ |
|
16 | """ | |
| 17 | Esta clase permite leer datos de voltage desde archivos en formato rawdata (.r). La lectura |
|
17 | Esta clase permite leer datos de voltage desde archivos en formato rawdata (.r). La lectura | |
| 18 | de los datos siempre se realiza por bloques. Los datos leidos (array de 3 dimensiones: |
|
18 | de los datos siempre se realiza por bloques. Los datos leidos (array de 3 dimensiones: | |
| 19 | perfiles*alturas*canales) son almacenados en la variable "buffer". |
|
19 | perfiles*alturas*canales) son almacenados en la variable "buffer". | |
| 20 |
|
20 | |||
| 21 | perfiles * alturas * canales |
|
21 | perfiles * alturas * canales | |
| 22 |
|
22 | |||
| 23 | Esta clase contiene instancias (objetos) de las clases BasicHeader, SystemHeader, |
|
23 | Esta clase contiene instancias (objetos) de las clases BasicHeader, SystemHeader, | |
| 24 | RadarControllerHeader y Voltage. Los tres primeros se usan para almacenar informacion de la |
|
24 | RadarControllerHeader y Voltage. Los tres primeros se usan para almacenar informacion de la | |
| 25 | cabecera de datos (metadata), y el cuarto (Voltage) para obtener y almacenar un perfil de |
|
25 | cabecera de datos (metadata), y el cuarto (Voltage) para obtener y almacenar un perfil de | |
| 26 | datos desde el "buffer" cada vez que se ejecute el metodo "getData". |
|
26 | datos desde el "buffer" cada vez que se ejecute el metodo "getData". | |
| 27 |
|
27 | |||
| 28 | Example: |
|
28 | Example: | |
| 29 |
|
29 | |||
| 30 | dpath = "/home/myuser/data" |
|
30 | dpath = "/home/myuser/data" | |
| 31 |
|
31 | |||
| 32 | startTime = datetime.datetime(2010,1,20,0,0,0,0,0,0) |
|
32 | startTime = datetime.datetime(2010,1,20,0,0,0,0,0,0) | |
| 33 |
|
33 | |||
| 34 | endTime = datetime.datetime(2010,1,21,23,59,59,0,0,0) |
|
34 | endTime = datetime.datetime(2010,1,21,23,59,59,0,0,0) | |
| 35 |
|
35 | |||
| 36 | readerObj = VoltageReader() |
|
36 | readerObj = VoltageReader() | |
| 37 |
|
37 | |||
| 38 | readerObj.setup(dpath, startTime, endTime) |
|
38 | readerObj.setup(dpath, startTime, endTime) | |
| 39 |
|
39 | |||
| 40 | while(True): |
|
40 | while(True): | |
| 41 |
|
41 | |||
| 42 | #to get one profile |
|
42 | #to get one profile | |
| 43 | profile = readerObj.getData() |
|
43 | profile = readerObj.getData() | |
| 44 |
|
44 | |||
| 45 | #print the profile |
|
45 | #print the profile | |
| 46 | print profile |
|
46 | print profile | |
| 47 |
|
47 | |||
| 48 | #If you want to see all datablock |
|
48 | #If you want to see all datablock | |
| 49 | print readerObj.datablock |
|
49 | print readerObj.datablock | |
| 50 |
|
50 | |||
| 51 | if readerObj.flagNoMoreFiles: |
|
51 | if readerObj.flagNoMoreFiles: | |
| 52 | break |
|
52 | break | |
| 53 |
|
53 | |||
| 54 | """ |
|
54 | """ | |
| 55 |
|
55 | |||
| 56 | def __init__(self): |
|
56 | def __init__(self): | |
| 57 | """ |
|
57 | """ | |
| 58 | Inicializador de la clase VoltageReader para la lectura de datos de voltage. |
|
58 | Inicializador de la clase VoltageReader para la lectura de datos de voltage. | |
| 59 |
|
59 | |||
| 60 | Input: |
|
60 | Input: | |
| 61 | dataOut : Objeto de la clase Voltage. Este objeto sera utilizado para |
|
61 | dataOut : Objeto de la clase Voltage. Este objeto sera utilizado para | |
| 62 | almacenar un perfil de datos cada vez que se haga un requerimiento |
|
62 | almacenar un perfil de datos cada vez que se haga un requerimiento | |
| 63 | (getData). El perfil sera obtenido a partir del buffer de datos, |
|
63 | (getData). El perfil sera obtenido a partir del buffer de datos, | |
| 64 | si el buffer esta vacio se hara un nuevo proceso de lectura de un |
|
64 | si el buffer esta vacio se hara un nuevo proceso de lectura de un | |
| 65 | bloque de datos. |
|
65 | bloque de datos. | |
| 66 | Si este parametro no es pasado se creara uno internamente. |
|
66 | Si este parametro no es pasado se creara uno internamente. | |
| 67 |
|
67 | |||
| 68 | Variables afectadas: |
|
68 | Variables afectadas: | |
| 69 | self.dataOut |
|
69 | self.dataOut | |
| 70 |
|
70 | |||
| 71 | Return: |
|
71 | Return: | |
| 72 | None |
|
72 | None | |
| 73 | """ |
|
73 | """ | |
| 74 |
|
74 | |||
| 75 | ProcessingUnit.__init__(self) |
|
75 | ProcessingUnit.__init__(self) | |
| 76 |
|
76 | |||
| 77 | self.ext = ".r" |
|
77 | self.ext = ".r" | |
| 78 | self.optchar = "D" |
|
78 | self.optchar = "D" | |
| 79 | self.basicHeaderObj = BasicHeader(LOCALTIME) |
|
79 | self.basicHeaderObj = BasicHeader(LOCALTIME) | |
| 80 | self.systemHeaderObj = SystemHeader() |
|
80 | self.systemHeaderObj = SystemHeader() | |
| 81 | self.radarControllerHeaderObj = RadarControllerHeader() |
|
81 | self.radarControllerHeaderObj = RadarControllerHeader() | |
|
|
82 | ||||
| 82 | self.processingHeaderObj = ProcessingHeader() |
|
83 | self.processingHeaderObj = ProcessingHeader() | |
| 83 | self.lastUTTime = 0 |
|
84 | self.lastUTTime = 0 | |
| 84 |
self.profileIndex = 2**32 - 1 |
|
85 | self.profileIndex = 2**32 - 1 | |
| 85 | self.dataOut = Voltage() |
|
86 | self.dataOut = Voltage() | |
| 86 | self.selBlocksize = None |
|
87 | self.selBlocksize = None | |
| 87 | self.selBlocktime = None |
|
88 | self.selBlocktime = None | |
| 88 |
|
89 | ##print("1--OKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK") | ||
| 89 | def createObjByDefault(self): |
|
90 | def createObjByDefault(self): | |
| 90 |
|
91 | ##print("2--OKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK") | ||
| 91 | dataObj = Voltage() |
|
92 | dataObj = Voltage() | |
| 92 |
|
93 | |||
| 93 | return dataObj |
|
94 | return dataObj | |
| 94 |
|
95 | |||
| 95 | def __hasNotDataInBuffer(self): |
|
96 | def __hasNotDataInBuffer(self): | |
| 96 |
|
97 | ##print("3--OKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK") | ||
| 97 | if self.profileIndex >= self.processingHeaderObj.profilesPerBlock * self.nTxs: |
|
98 | if self.profileIndex >= self.processingHeaderObj.profilesPerBlock * self.nTxs: | |
| 98 | return 1 |
|
99 | return 1 | |
| 99 |
|
100 | |||
| 100 | return 0 |
|
101 | return 0 | |
| 101 |
|
102 | |||
| 102 | def getBlockDimension(self): |
|
103 | def getBlockDimension(self): | |
| 103 | """ |
|
104 | """ | |
| 104 | Obtiene la cantidad de puntos a leer por cada bloque de datos |
|
105 | Obtiene la cantidad de puntos a leer por cada bloque de datos | |
| 105 |
|
106 | |||
| 106 | Affected: |
|
107 | Affected: | |
| 107 | self.blocksize |
|
108 | self.blocksize | |
| 108 |
|
109 | |||
| 109 | Return: |
|
110 | Return: | |
| 110 | None |
|
111 | None | |
| 111 | """ |
|
112 | """ | |
|
|
113 | ##print("4--OKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK") | |||
| 112 | pts2read = self.processingHeaderObj.profilesPerBlock * \ |
|
114 | pts2read = self.processingHeaderObj.profilesPerBlock * \ | |
| 113 | self.processingHeaderObj.nHeights * self.systemHeaderObj.nChannels |
|
115 | self.processingHeaderObj.nHeights * self.systemHeaderObj.nChannels | |
| 114 | self.blocksize = pts2read |
|
116 | self.blocksize = pts2read | |
| 115 |
|
117 | |||
| 116 | def readBlock(self): |
|
118 | def readBlock(self): | |
|
|
119 | ||||
| 117 | """ |
|
120 | """ | |
| 118 | readBlock lee el bloque de datos desde la posicion actual del puntero del archivo |
|
121 | readBlock lee el bloque de datos desde la posicion actual del puntero del archivo | |
| 119 | (self.fp) y actualiza todos los parametros relacionados al bloque de datos |
|
122 | (self.fp) y actualiza todos los parametros relacionados al bloque de datos | |
| 120 | (metadata + data). La data leida es almacenada en el buffer y el contador del buffer |
|
123 | (metadata + data). La data leida es almacenada en el buffer y el contador del buffer | |
| 121 | es seteado a 0 |
|
124 | es seteado a 0 | |
| 122 |
|
125 | |||
| 123 | Inputs: |
|
126 | Inputs: | |
| 124 | None |
|
127 | None | |
| 125 |
|
128 | |||
| 126 | Return: |
|
129 | Return: | |
| 127 | None |
|
130 | None | |
| 128 |
|
131 | |||
| 129 | Affected: |
|
132 | Affected: | |
| 130 | self.profileIndex |
|
133 | self.profileIndex | |
| 131 | self.datablock |
|
134 | self.datablock | |
| 132 | self.flagIsNewFile |
|
135 | self.flagIsNewFile | |
| 133 | self.flagIsNewBlock |
|
136 | self.flagIsNewBlock | |
| 134 | self.nTotalBlocks |
|
137 | self.nTotalBlocks | |
| 135 |
|
138 | |||
| 136 |
Exceptions: |
|
139 | Exceptions: | |
| 137 | Si un bloque leido no es un bloque valido |
|
140 | Si un bloque leido no es un bloque valido | |
| 138 | """ |
|
141 | """ | |
| 139 |
|
142 | ##print("5--OKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK") | ||
| 140 | # if self.server is not None: |
|
143 | # if self.server is not None: | |
| 141 | # self.zBlock = self.receiver.recv() |
|
144 | # self.zBlock = self.receiver.recv() | |
| 142 | # self.zHeader = self.zBlock[:24] |
|
145 | # self.zHeader = self.zBlock[:24] | |
| 143 | # self.zDataBlock = self.zBlock[24:] |
|
146 | # self.zDataBlock = self.zBlock[24:] | |
| 144 | # junk = numpy.fromstring(self.zDataBlock, numpy.dtype([('real','<i4'),('imag','<i4')])) |
|
147 | # junk = numpy.fromstring(self.zDataBlock, numpy.dtype([('real','<i4'),('imag','<i4')])) | |
| 145 | # self.processingHeaderObj.profilesPerBlock = 240 |
|
148 | # self.processingHeaderObj.profilesPerBlock = 240 | |
| 146 | # self.processingHeaderObj.nHeights = 248 |
|
149 | # self.processingHeaderObj.nHeights = 248 | |
| 147 | # self.systemHeaderObj.nChannels |
|
150 | # self.systemHeaderObj.nChannels | |
| 148 | # else: |
|
151 | # else: | |
| 149 | current_pointer_location = self.fp.tell() |
|
152 | current_pointer_location = self.fp.tell() | |
| 150 | junk = numpy.fromfile(self.fp, self.dtype, self.blocksize) |
|
153 | junk = numpy.fromfile(self.fp, self.dtype, self.blocksize) | |
| 151 |
|
154 | |||
| 152 | try: |
|
155 | try: | |
| 153 | junk = junk.reshape((self.processingHeaderObj.profilesPerBlock, |
|
156 | junk = junk.reshape((self.processingHeaderObj.profilesPerBlock, | |
| 154 | self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels)) |
|
157 | self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels)) | |
| 155 | except: |
|
158 | except: | |
| 156 | # print "The read block (%3d) has not enough data" %self.nReadBlocks |
|
159 | # print "The read block (%3d) has not enough data" %self.nReadBlocks | |
| 157 |
|
160 | |||
| 158 | if self.waitDataBlock(pointer_location=current_pointer_location): |
|
161 | if self.waitDataBlock(pointer_location=current_pointer_location): | |
| 159 | junk = numpy.fromfile(self.fp, self.dtype, self.blocksize) |
|
162 | junk = numpy.fromfile(self.fp, self.dtype, self.blocksize) | |
| 160 | junk = junk.reshape((self.processingHeaderObj.profilesPerBlock, |
|
163 | junk = junk.reshape((self.processingHeaderObj.profilesPerBlock, | |
| 161 | self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels)) |
|
164 | self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels)) | |
| 162 | # return 0 |
|
165 | # return 0 | |
| 163 |
|
166 | |||
| 164 | # Dimensions : nChannels, nProfiles, nSamples |
|
167 | # Dimensions : nChannels, nProfiles, nSamples | |
| 165 |
|
168 | |||
| 166 | junk = numpy.transpose(junk, (2, 0, 1)) |
|
169 | junk = numpy.transpose(junk, (2, 0, 1)) | |
| 167 | self.datablock = junk['real'] + junk['imag'] * 1j |
|
170 | self.datablock = junk['real'] + junk['imag'] * 1j | |
| 168 |
|
171 | |||
| 169 | self.profileIndex = 0 |
|
172 | self.profileIndex = 0 | |
| 170 |
|
173 | |||
| 171 | self.flagIsNewFile = 0 |
|
174 | self.flagIsNewFile = 0 | |
| 172 | self.flagIsNewBlock = 1 |
|
175 | self.flagIsNewBlock = 1 | |
| 173 |
|
176 | |||
| 174 | self.nTotalBlocks += 1 |
|
177 | self.nTotalBlocks += 1 | |
| 175 | self.nReadBlocks += 1 |
|
178 | self.nReadBlocks += 1 | |
| 176 |
|
179 | |||
| 177 | return 1 |
|
180 | return 1 | |
| 178 |
|
181 | |||
| 179 | def getFirstHeader(self): |
|
182 | def getFirstHeader(self): | |
|
|
183 | ##print("6--OKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK") | |||
| 180 |
|
184 | |||
| 181 | self.getBasicHeader() |
|
185 | self.getBasicHeader() | |
| 182 |
|
186 | |||
| 183 | self.dataOut.processingHeaderObj = self.processingHeaderObj.copy() |
|
187 | self.dataOut.processingHeaderObj = self.processingHeaderObj.copy() | |
| 184 |
|
188 | |||
| 185 | self.dataOut.systemHeaderObj = self.systemHeaderObj.copy() |
|
189 | self.dataOut.systemHeaderObj = self.systemHeaderObj.copy() | |
| 186 |
|
190 | |||
| 187 | self.dataOut.radarControllerHeaderObj = self.radarControllerHeaderObj.copy() |
|
191 | self.dataOut.radarControllerHeaderObj = self.radarControllerHeaderObj.copy() | |
| 188 |
|
192 | |||
|
|
193 | #self.dataOut.ippSeconds_general=self.radarControllerHeaderObj.ippSeconds | |||
|
|
194 | #print(self.nTxs) | |||
| 189 | if self.nTxs > 1: |
|
195 | if self.nTxs > 1: | |
|
|
196 | #print(self.radarControllerHeaderObj.ippSeconds) | |||
| 190 | self.dataOut.radarControllerHeaderObj.ippSeconds = self.radarControllerHeaderObj.ippSeconds / self.nTxs |
|
197 | self.dataOut.radarControllerHeaderObj.ippSeconds = self.radarControllerHeaderObj.ippSeconds / self.nTxs | |
|
|
198 | #print(self.radarControllerHeaderObj.ippSeconds) | |||
| 191 | # Time interval and code are propierties of dataOut. Its value depends of radarControllerHeaderObj. |
|
199 | # Time interval and code are propierties of dataOut. Its value depends of radarControllerHeaderObj. | |
| 192 |
|
200 | |||
| 193 | # self.dataOut.timeInterval = self.radarControllerHeaderObj.ippSeconds * self.processingHeaderObj.nCohInt |
|
201 | # self.dataOut.timeInterval = self.radarControllerHeaderObj.ippSeconds * self.processingHeaderObj.nCohInt | |
| 194 | # |
|
202 | # | |
| 195 | # if self.radarControllerHeaderObj.code is not None: |
|
203 | # if self.radarControllerHeaderObj.code is not None: | |
| 196 | # |
|
204 | # | |
| 197 | # self.dataOut.nCode = self.radarControllerHeaderObj.nCode |
|
205 | # self.dataOut.nCode = self.radarControllerHeaderObj.nCode | |
| 198 | # |
|
206 | # | |
| 199 | # self.dataOut.nBaud = self.radarControllerHeaderObj.nBaud |
|
207 | # self.dataOut.nBaud = self.radarControllerHeaderObj.nBaud | |
| 200 | # |
|
208 | # | |
| 201 | # self.dataOut.code = self.radarControllerHeaderObj.code |
|
209 | # self.dataOut.code = self.radarControllerHeaderObj.code | |
| 202 |
|
210 | |||
| 203 | self.dataOut.dtype = self.dtype |
|
211 | self.dataOut.dtype = self.dtype | |
| 204 |
|
212 | |||
| 205 | self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock |
|
213 | self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock | |
| 206 |
|
214 | |||
| 207 | self.dataOut.heightList = numpy.arange( |
|
215 | self.dataOut.heightList = numpy.arange( | |
| 208 | self.processingHeaderObj.nHeights) * self.processingHeaderObj.deltaHeight + self.processingHeaderObj.firstHeight |
|
216 | self.processingHeaderObj.nHeights) * self.processingHeaderObj.deltaHeight + self.processingHeaderObj.firstHeight | |
| 209 |
|
217 | |||
| 210 | self.dataOut.channelList = list(range(self.systemHeaderObj.nChannels)) |
|
218 | self.dataOut.channelList = list(range(self.systemHeaderObj.nChannels)) | |
| 211 |
|
219 | |||
| 212 | self.dataOut.nCohInt = self.processingHeaderObj.nCohInt |
|
220 | self.dataOut.nCohInt = self.processingHeaderObj.nCohInt | |
| 213 |
|
221 | |||
| 214 | # asumo q la data no esta decodificada |
|
222 | # asumo q la data no esta decodificada | |
| 215 | self.dataOut.flagDecodeData = self.processingHeaderObj.flag_decode |
|
223 | self.dataOut.flagDecodeData = self.processingHeaderObj.flag_decode | |
| 216 |
|
224 | |||
| 217 | # asumo q la data no esta sin flip |
|
225 | # asumo q la data no esta sin flip | |
| 218 | self.dataOut.flagDeflipData = self.processingHeaderObj.flag_deflip |
|
226 | self.dataOut.flagDeflipData = self.processingHeaderObj.flag_deflip | |
| 219 |
|
227 | |||
| 220 | self.dataOut.flagShiftFFT = self.processingHeaderObj.shif_fft |
|
228 | self.dataOut.flagShiftFFT = self.processingHeaderObj.shif_fft | |
| 221 |
|
229 | |||
| 222 | def reshapeData(self): |
|
230 | def reshapeData(self): | |
| 223 |
|
231 | ##print("7--OKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK") | ||
| 224 | if self.nTxs < 0: |
|
232 | if self.nTxs < 0: | |
| 225 | return |
|
233 | return | |
| 226 |
|
234 | |||
| 227 | if self.nTxs == 1: |
|
235 | if self.nTxs == 1: | |
| 228 | return |
|
236 | return | |
| 229 |
|
237 | |||
| 230 | if self.nTxs < 1 and self.processingHeaderObj.profilesPerBlock % (1. / self.nTxs) != 0: |
|
238 | if self.nTxs < 1 and self.processingHeaderObj.profilesPerBlock % (1. / self.nTxs) != 0: | |
| 231 | raise ValueError("1./nTxs (=%f), should be a multiple of nProfiles (=%d)" % ( |
|
239 | raise ValueError("1./nTxs (=%f), should be a multiple of nProfiles (=%d)" % ( | |
| 232 | 1. / self.nTxs, self.processingHeaderObj.profilesPerBlock)) |
|
240 | 1. / self.nTxs, self.processingHeaderObj.profilesPerBlock)) | |
| 233 |
|
241 | |||
| 234 | if self.nTxs > 1 and self.processingHeaderObj.nHeights % self.nTxs != 0: |
|
242 | if self.nTxs > 1 and self.processingHeaderObj.nHeights % self.nTxs != 0: | |
| 235 | raise ValueError("nTxs (=%d), should be a multiple of nHeights (=%d)" % ( |
|
243 | raise ValueError("nTxs (=%d), should be a multiple of nHeights (=%d)" % ( | |
| 236 | self.nTxs, self.processingHeaderObj.nHeights)) |
|
244 | self.nTxs, self.processingHeaderObj.nHeights)) | |
| 237 |
|
245 | |||
| 238 | self.datablock = self.datablock.reshape( |
|
246 | self.datablock = self.datablock.reshape( | |
| 239 | (self.systemHeaderObj.nChannels, self.processingHeaderObj.profilesPerBlock * self.nTxs, int(self.processingHeaderObj.nHeights / self.nTxs))) |
|
247 | (self.systemHeaderObj.nChannels, self.processingHeaderObj.profilesPerBlock * self.nTxs, int(self.processingHeaderObj.nHeights / self.nTxs))) | |
| 240 |
|
248 | |||
| 241 | self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock * self.nTxs |
|
249 | self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock * self.nTxs | |
| 242 | self.dataOut.heightList = numpy.arange(self.processingHeaderObj.nHeights / self.nTxs) * \ |
|
250 | self.dataOut.heightList = numpy.arange(self.processingHeaderObj.nHeights / self.nTxs) * \ | |
| 243 | self.processingHeaderObj.deltaHeight + self.processingHeaderObj.firstHeight |
|
251 | self.processingHeaderObj.deltaHeight + self.processingHeaderObj.firstHeight | |
| 244 | self.dataOut.radarControllerHeaderObj.ippSeconds = self.radarControllerHeaderObj.ippSeconds / self.nTxs |
|
252 | self.dataOut.radarControllerHeaderObj.ippSeconds = self.radarControllerHeaderObj.ippSeconds / self.nTxs | |
| 245 |
|
253 | |||
| 246 | return |
|
254 | return | |
| 247 |
|
255 | |||
| 248 | def readFirstHeaderFromServer(self): |
|
256 | def readFirstHeaderFromServer(self): | |
| 249 |
|
257 | |||
|
|
258 | ##print("8--OKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK") | |||
| 250 | self.getFirstHeader() |
|
259 | self.getFirstHeader() | |
| 251 |
|
260 | |||
| 252 | self.firstHeaderSize = self.basicHeaderObj.size |
|
261 | self.firstHeaderSize = self.basicHeaderObj.size | |
| 253 |
|
262 | |||
| 254 | datatype = int(numpy.log2((self.processingHeaderObj.processFlags & |
|
263 | datatype = int(numpy.log2((self.processingHeaderObj.processFlags & | |
| 255 | PROCFLAG.DATATYPE_MASK)) - numpy.log2(PROCFLAG.DATATYPE_CHAR)) |
|
264 | PROCFLAG.DATATYPE_MASK)) - numpy.log2(PROCFLAG.DATATYPE_CHAR)) | |
| 256 | if datatype == 0: |
|
265 | if datatype == 0: | |
| 257 | datatype_str = numpy.dtype([('real', '<i1'), ('imag', '<i1')]) |
|
266 | datatype_str = numpy.dtype([('real', '<i1'), ('imag', '<i1')]) | |
| 258 | elif datatype == 1: |
|
267 | elif datatype == 1: | |
| 259 | datatype_str = numpy.dtype([('real', '<i2'), ('imag', '<i2')]) |
|
268 | datatype_str = numpy.dtype([('real', '<i2'), ('imag', '<i2')]) | |
| 260 | elif datatype == 2: |
|
269 | elif datatype == 2: | |
| 261 | datatype_str = numpy.dtype([('real', '<i4'), ('imag', '<i4')]) |
|
270 | datatype_str = numpy.dtype([('real', '<i4'), ('imag', '<i4')]) | |
| 262 | elif datatype == 3: |
|
271 | elif datatype == 3: | |
| 263 | datatype_str = numpy.dtype([('real', '<i8'), ('imag', '<i8')]) |
|
272 | datatype_str = numpy.dtype([('real', '<i8'), ('imag', '<i8')]) | |
| 264 | elif datatype == 4: |
|
273 | elif datatype == 4: | |
| 265 | datatype_str = numpy.dtype([('real', '<f4'), ('imag', '<f4')]) |
|
274 | datatype_str = numpy.dtype([('real', '<f4'), ('imag', '<f4')]) | |
| 266 | elif datatype == 5: |
|
275 | elif datatype == 5: | |
| 267 | datatype_str = numpy.dtype([('real', '<f8'), ('imag', '<f8')]) |
|
276 | datatype_str = numpy.dtype([('real', '<f8'), ('imag', '<f8')]) | |
| 268 | else: |
|
277 | else: | |
| 269 | raise ValueError('Data type was not defined') |
|
278 | raise ValueError('Data type was not defined') | |
| 270 |
|
279 | |||
| 271 | self.dtype = datatype_str |
|
280 | self.dtype = datatype_str | |
| 272 | #self.ippSeconds = 2 * 1000 * self.radarControllerHeaderObj.ipp / self.c |
|
281 | #self.ippSeconds = 2 * 1000 * self.radarControllerHeaderObj.ipp / self.c | |
| 273 | self.fileSizeByHeader = self.processingHeaderObj.dataBlocksPerFile * self.processingHeaderObj.blockSize + \ |
|
282 | self.fileSizeByHeader = self.processingHeaderObj.dataBlocksPerFile * self.processingHeaderObj.blockSize + \ | |
| 274 | self.firstHeaderSize + self.basicHeaderSize * \ |
|
283 | self.firstHeaderSize + self.basicHeaderSize * \ | |
| 275 | (self.processingHeaderObj.dataBlocksPerFile - 1) |
|
284 | (self.processingHeaderObj.dataBlocksPerFile - 1) | |
| 276 | # self.dataOut.channelList = numpy.arange(self.systemHeaderObj.numChannels) |
|
285 | # self.dataOut.channelList = numpy.arange(self.systemHeaderObj.numChannels) | |
| 277 | # self.dataOut.channelIndexList = numpy.arange(self.systemHeaderObj.numChannels) |
|
286 | # self.dataOut.channelIndexList = numpy.arange(self.systemHeaderObj.numChannels) | |
| 278 | self.getBlockDimension() |
|
287 | self.getBlockDimension() | |
| 279 |
|
288 | |||
| 280 | def getFromServer(self): |
|
289 | def getFromServer(self): | |
|
|
290 | ##print("9--OKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK") | |||
| 281 | self.flagDiscontinuousBlock = 0 |
|
291 | self.flagDiscontinuousBlock = 0 | |
| 282 | self.profileIndex = 0 |
|
292 | self.profileIndex = 0 | |
| 283 | self.flagIsNewBlock = 1 |
|
293 | self.flagIsNewBlock = 1 | |
| 284 | self.dataOut.flagNoData = False |
|
294 | self.dataOut.flagNoData = False | |
| 285 | self.nTotalBlocks += 1 |
|
295 | self.nTotalBlocks += 1 | |
| 286 | self.nReadBlocks += 1 |
|
296 | self.nReadBlocks += 1 | |
| 287 | self.blockPointer = 0 |
|
297 | self.blockPointer = 0 | |
| 288 |
|
298 | |||
| 289 | block = self.receiver.recv() |
|
299 | block = self.receiver.recv() | |
| 290 |
|
300 | |||
| 291 | self.basicHeaderObj.read(block[self.blockPointer:]) |
|
301 | self.basicHeaderObj.read(block[self.blockPointer:]) | |
| 292 | self.blockPointer += self.basicHeaderObj.length |
|
302 | self.blockPointer += self.basicHeaderObj.length | |
| 293 | self.systemHeaderObj.read(block[self.blockPointer:]) |
|
303 | self.systemHeaderObj.read(block[self.blockPointer:]) | |
| 294 | self.blockPointer += self.systemHeaderObj.length |
|
304 | self.blockPointer += self.systemHeaderObj.length | |
| 295 | self.radarControllerHeaderObj.read(block[self.blockPointer:]) |
|
305 | self.radarControllerHeaderObj.read(block[self.blockPointer:]) | |
| 296 | self.blockPointer += self.radarControllerHeaderObj.length |
|
306 | self.blockPointer += self.radarControllerHeaderObj.length | |
| 297 | self.processingHeaderObj.read(block[self.blockPointer:]) |
|
307 | self.processingHeaderObj.read(block[self.blockPointer:]) | |
| 298 | self.blockPointer += self.processingHeaderObj.length |
|
308 | self.blockPointer += self.processingHeaderObj.length | |
| 299 | self.readFirstHeaderFromServer() |
|
309 | self.readFirstHeaderFromServer() | |
| 300 |
|
310 | |||
| 301 | timestamp = self.basicHeaderObj.get_datatime() |
|
311 | timestamp = self.basicHeaderObj.get_datatime() | |
| 302 | print('[Reading] - Block {} - {}'.format(self.nTotalBlocks, timestamp)) |
|
312 | print('[Reading] - Block {} - {}'.format(self.nTotalBlocks, timestamp)) | |
| 303 | current_pointer_location = self.blockPointer |
|
313 | current_pointer_location = self.blockPointer | |
| 304 | junk = numpy.fromstring( |
|
314 | junk = numpy.fromstring( | |
| 305 | block[self.blockPointer:], self.dtype, self.blocksize) |
|
315 | block[self.blockPointer:], self.dtype, self.blocksize) | |
| 306 |
|
316 | |||
| 307 | try: |
|
317 | try: | |
| 308 | junk = junk.reshape((self.processingHeaderObj.profilesPerBlock, |
|
318 | junk = junk.reshape((self.processingHeaderObj.profilesPerBlock, | |
| 309 | self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels)) |
|
319 | self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels)) | |
| 310 | except: |
|
320 | except: | |
| 311 | # print "The read block (%3d) has not enough data" %self.nReadBlocks |
|
321 | # print "The read block (%3d) has not enough data" %self.nReadBlocks | |
| 312 | if self.waitDataBlock(pointer_location=current_pointer_location): |
|
322 | if self.waitDataBlock(pointer_location=current_pointer_location): | |
| 313 | junk = numpy.fromstring( |
|
323 | junk = numpy.fromstring( | |
| 314 | block[self.blockPointer:], self.dtype, self.blocksize) |
|
324 | block[self.blockPointer:], self.dtype, self.blocksize) | |
| 315 | junk = junk.reshape((self.processingHeaderObj.profilesPerBlock, |
|
325 | junk = junk.reshape((self.processingHeaderObj.profilesPerBlock, | |
| 316 | self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels)) |
|
326 | self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels)) | |
| 317 | # return 0 |
|
327 | # return 0 | |
| 318 |
|
328 | |||
| 319 | # Dimensions : nChannels, nProfiles, nSamples |
|
329 | # Dimensions : nChannels, nProfiles, nSamples | |
| 320 |
|
330 | |||
| 321 | junk = numpy.transpose(junk, (2, 0, 1)) |
|
331 | junk = numpy.transpose(junk, (2, 0, 1)) | |
| 322 | self.datablock = junk['real'] + junk['imag'] * 1j |
|
332 | self.datablock = junk['real'] + junk['imag'] * 1j | |
| 323 | self.profileIndex = 0 |
|
333 | self.profileIndex = 0 | |
| 324 | if self.selBlocksize == None: |
|
334 | if self.selBlocksize == None: | |
| 325 | self.selBlocksize = self.dataOut.nProfiles |
|
335 | self.selBlocksize = self.dataOut.nProfiles | |
| 326 | if self.selBlocktime != None: |
|
336 | if self.selBlocktime != None: | |
| 327 | if self.dataOut.nCohInt is not None: |
|
337 | if self.dataOut.nCohInt is not None: | |
| 328 | nCohInt = self.dataOut.nCohInt |
|
338 | nCohInt = self.dataOut.nCohInt | |
| 329 | else: |
|
339 | else: | |
| 330 | nCohInt = 1 |
|
340 | nCohInt = 1 | |
| 331 | self.selBlocksize = int(self.dataOut.nProfiles * round(self.selBlocktime / ( |
|
341 | self.selBlocksize = int(self.dataOut.nProfiles * round(self.selBlocktime / ( | |
| 332 | nCohInt * self.dataOut.ippSeconds * self.dataOut.nProfiles))) |
|
342 | nCohInt * self.dataOut.ippSeconds * self.dataOut.nProfiles))) | |
| 333 | self.dataOut.data = self.datablock[:, |
|
343 | self.dataOut.data = self.datablock[:, | |
| 334 | self.profileIndex:self.profileIndex + self.selBlocksize, :] |
|
344 | self.profileIndex:self.profileIndex + self.selBlocksize, :] | |
| 335 | datasize = self.dataOut.data.shape[1] |
|
345 | datasize = self.dataOut.data.shape[1] | |
| 336 | if datasize < self.selBlocksize: |
|
346 | if datasize < self.selBlocksize: | |
| 337 | buffer = numpy.zeros( |
|
347 | buffer = numpy.zeros( | |
| 338 | (self.dataOut.data.shape[0], self.selBlocksize, self.dataOut.data.shape[2]), dtype='complex') |
|
348 | (self.dataOut.data.shape[0], self.selBlocksize, self.dataOut.data.shape[2]), dtype='complex') | |
| 339 | buffer[:, :datasize, :] = self.dataOut.data |
|
349 | buffer[:, :datasize, :] = self.dataOut.data | |
| 340 | self.dataOut.data = buffer |
|
350 | self.dataOut.data = buffer | |
| 341 | self.profileIndex = blockIndex |
|
351 | self.profileIndex = blockIndex | |
| 342 |
|
352 | |||
| 343 | self.dataOut.flagDataAsBlock = True |
|
353 | self.dataOut.flagDataAsBlock = True | |
| 344 | self.flagIsNewBlock = 1 |
|
354 | self.flagIsNewBlock = 1 | |
| 345 | self.dataOut.realtime = self.online |
|
355 | self.dataOut.realtime = self.online | |
| 346 |
|
356 | |||
| 347 | return self.dataOut.data |
|
357 | return self.dataOut.data | |
| 348 |
|
358 | |||
| 349 | def getData(self): |
|
359 | def getData(self): | |
| 350 | """ |
|
360 | """ | |
| 351 | getData obtiene una unidad de datos del buffer de lectura, un perfil, y la copia al objeto self.dataOut |
|
361 | getData obtiene una unidad de datos del buffer de lectura, un perfil, y la copia al objeto self.dataOut | |
| 352 | del tipo "Voltage" con todos los parametros asociados a este (metadata). cuando no hay datos |
|
362 | del tipo "Voltage" con todos los parametros asociados a este (metadata). cuando no hay datos | |
| 353 | en el buffer de lectura es necesario hacer una nueva lectura de los bloques de datos usando |
|
363 | en el buffer de lectura es necesario hacer una nueva lectura de los bloques de datos usando | |
| 354 | "readNextBlock" |
|
364 | "readNextBlock" | |
| 355 |
|
365 | |||
| 356 | Ademas incrementa el contador del buffer "self.profileIndex" en 1. |
|
366 | Ademas incrementa el contador del buffer "self.profileIndex" en 1. | |
| 357 |
|
367 | |||
| 358 | Return: |
|
368 | Return: | |
| 359 |
|
369 | |||
| 360 | Si el flag self.getByBlock ha sido seteado el bloque completo es copiado a self.dataOut y el self.profileIndex |
|
370 | Si el flag self.getByBlock ha sido seteado el bloque completo es copiado a self.dataOut y el self.profileIndex | |
| 361 | es igual al total de perfiles leidos desde el archivo. |
|
371 | es igual al total de perfiles leidos desde el archivo. | |
| 362 |
|
372 | |||
| 363 | Si self.getByBlock == False: |
|
373 | Si self.getByBlock == False: | |
| 364 |
|
374 | |||
| 365 | self.dataOut.data = buffer[:, thisProfile, :] |
|
375 | self.dataOut.data = buffer[:, thisProfile, :] | |
| 366 |
|
376 | |||
| 367 | shape = [nChannels, nHeis] |
|
377 | shape = [nChannels, nHeis] | |
| 368 |
|
378 | |||
| 369 | Si self.getByBlock == True: |
|
379 | Si self.getByBlock == True: | |
| 370 |
|
380 | |||
| 371 | self.dataOut.data = buffer[:, :, :] |
|
381 | self.dataOut.data = buffer[:, :, :] | |
| 372 |
|
382 | |||
| 373 | shape = [nChannels, nProfiles, nHeis] |
|
383 | shape = [nChannels, nProfiles, nHeis] | |
| 374 |
|
384 | |||
| 375 | Variables afectadas: |
|
385 | Variables afectadas: | |
| 376 | self.dataOut |
|
386 | self.dataOut | |
| 377 | self.profileIndex |
|
387 | self.profileIndex | |
| 378 |
|
388 | |||
| 379 | Affected: |
|
389 | Affected: | |
| 380 | self.dataOut |
|
390 | self.dataOut | |
| 381 | self.profileIndex |
|
391 | self.profileIndex | |
| 382 | self.flagDiscontinuousBlock |
|
392 | self.flagDiscontinuousBlock | |
| 383 | self.flagIsNewBlock |
|
393 | self.flagIsNewBlock | |
| 384 | """ |
|
394 | """ | |
|
|
395 | ||||
|
|
396 | ##print("10--OKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK") | |||
| 385 | if self.flagNoMoreFiles: |
|
397 | if self.flagNoMoreFiles: | |
| 386 | self.dataOut.flagNoData = True |
|
398 | self.dataOut.flagNoData = True | |
| 387 | return 0 |
|
399 | return 0 | |
| 388 | self.flagDiscontinuousBlock = 0 |
|
400 | self.flagDiscontinuousBlock = 0 | |
| 389 | self.flagIsNewBlock = 0 |
|
401 | self.flagIsNewBlock = 0 | |
| 390 | if self.__hasNotDataInBuffer(): |
|
402 | if self.__hasNotDataInBuffer(): | |
| 391 | if not(self.readNextBlock()): |
|
403 | if not(self.readNextBlock()): | |
| 392 | return 0 |
|
404 | return 0 | |
| 393 |
|
405 | |||
| 394 | self.getFirstHeader() |
|
406 | self.getFirstHeader() | |
| 395 |
|
407 | |||
| 396 | self.reshapeData() |
|
408 | self.reshapeData() | |
| 397 | if self.datablock is None: |
|
409 | if self.datablock is None: | |
| 398 | self.dataOut.flagNoData = True |
|
410 | self.dataOut.flagNoData = True | |
| 399 | return 0 |
|
411 | return 0 | |
| 400 |
|
412 | |||
| 401 | if not self.getByBlock: |
|
413 | if not self.getByBlock: | |
| 402 |
|
414 | |||
| 403 | """ |
|
415 | """ | |
| 404 | Return profile by profile |
|
416 | Return profile by profile | |
| 405 |
|
417 | |||
| 406 | If nTxs > 1 then one profile is divided by nTxs and number of total |
|
418 | If nTxs > 1 then one profile is divided by nTxs and number of total | |
| 407 | blocks is increased by nTxs (nProfiles *= nTxs) |
|
419 | blocks is increased by nTxs (nProfiles *= nTxs) | |
| 408 | """ |
|
420 | """ | |
| 409 | self.dataOut.flagDataAsBlock = False |
|
421 | self.dataOut.flagDataAsBlock = False | |
| 410 | self.dataOut.data = self.datablock[:, self.profileIndex, :] |
|
422 | self.dataOut.data = self.datablock[:, self.profileIndex, :] | |
| 411 | self.dataOut.profileIndex = self.profileIndex |
|
423 | self.dataOut.profileIndex = self.profileIndex | |
| 412 |
|
424 | |||
|
|
425 | ||||
| 413 | self.profileIndex += 1 |
|
426 | self.profileIndex += 1 | |
| 414 |
|
427 | |||
| 415 | else: |
|
428 | else: | |
| 416 | """ |
|
429 | """ | |
| 417 | Return a block |
|
430 | Return a block | |
| 418 | """ |
|
431 | """ | |
| 419 | if self.selBlocksize == None: |
|
432 | if self.selBlocksize == None: | |
| 420 | self.selBlocksize = self.dataOut.nProfiles |
|
433 | self.selBlocksize = self.dataOut.nProfiles | |
| 421 | if self.selBlocktime != None: |
|
434 | if self.selBlocktime != None: | |
| 422 | if self.dataOut.nCohInt is not None: |
|
435 | if self.dataOut.nCohInt is not None: | |
| 423 | nCohInt = self.dataOut.nCohInt |
|
436 | nCohInt = self.dataOut.nCohInt | |
| 424 | else: |
|
437 | else: | |
| 425 | nCohInt = 1 |
|
438 | nCohInt = 1 | |
| 426 | self.selBlocksize = int(self.dataOut.nProfiles * round(self.selBlocktime / ( |
|
439 | self.selBlocksize = int(self.dataOut.nProfiles * round(self.selBlocktime / ( | |
| 427 | nCohInt * self.dataOut.ippSeconds * self.dataOut.nProfiles))) |
|
440 | nCohInt * self.dataOut.ippSeconds * self.dataOut.nProfiles))) | |
| 428 |
|
441 | |||
| 429 | self.dataOut.data = self.datablock[:, |
|
442 | self.dataOut.data = self.datablock[:, | |
| 430 | self.profileIndex:self.profileIndex + self.selBlocksize, :] |
|
443 | self.profileIndex:self.profileIndex + self.selBlocksize, :] | |
| 431 | self.profileIndex += self.selBlocksize |
|
444 | self.profileIndex += self.selBlocksize | |
| 432 | datasize = self.dataOut.data.shape[1] |
|
445 | datasize = self.dataOut.data.shape[1] | |
| 433 |
|
446 | |||
| 434 | if datasize < self.selBlocksize: |
|
447 | if datasize < self.selBlocksize: | |
| 435 | buffer = numpy.zeros( |
|
448 | buffer = numpy.zeros( | |
| 436 | (self.dataOut.data.shape[0], self.selBlocksize, self.dataOut.data.shape[2]), dtype='complex') |
|
449 | (self.dataOut.data.shape[0], self.selBlocksize, self.dataOut.data.shape[2]), dtype='complex') | |
| 437 | buffer[:, :datasize, :] = self.dataOut.data |
|
450 | buffer[:, :datasize, :] = self.dataOut.data | |
| 438 |
|
451 | |||
| 439 | while datasize < self.selBlocksize: # Not enough profiles to fill the block |
|
452 | while datasize < self.selBlocksize: # Not enough profiles to fill the block | |
| 440 | if not(self.readNextBlock()): |
|
453 | if not(self.readNextBlock()): | |
| 441 | return 0 |
|
454 | return 0 | |
| 442 | self.getFirstHeader() |
|
455 | self.getFirstHeader() | |
| 443 | self.reshapeData() |
|
456 | self.reshapeData() | |
| 444 | if self.datablock is None: |
|
457 | if self.datablock is None: | |
| 445 | self.dataOut.flagNoData = True |
|
458 | self.dataOut.flagNoData = True | |
| 446 | return 0 |
|
459 | return 0 | |
| 447 | # stack data |
|
460 | # stack data | |
| 448 | blockIndex = self.selBlocksize - datasize |
|
461 | blockIndex = self.selBlocksize - datasize | |
| 449 | datablock1 = self.datablock[:, :blockIndex, :] |
|
462 | datablock1 = self.datablock[:, :blockIndex, :] | |
| 450 |
|
463 | |||
| 451 | buffer[:, datasize:datasize + |
|
464 | buffer[:, datasize:datasize + | |
| 452 | datablock1.shape[1], :] = datablock1 |
|
465 | datablock1.shape[1], :] = datablock1 | |
| 453 | datasize += datablock1.shape[1] |
|
466 | datasize += datablock1.shape[1] | |
| 454 |
|
467 | |||
| 455 | self.dataOut.data = buffer |
|
468 | self.dataOut.data = buffer | |
| 456 | self.profileIndex = blockIndex |
|
469 | self.profileIndex = blockIndex | |
| 457 |
|
470 | |||
| 458 | self.dataOut.flagDataAsBlock = True |
|
471 | self.dataOut.flagDataAsBlock = True | |
| 459 | self.dataOut.nProfiles = self.dataOut.data.shape[1] |
|
472 | self.dataOut.nProfiles = self.dataOut.data.shape[1] | |
| 460 |
|
473 | |||
|
|
474 | #######################DP####################### | |||
|
|
475 | self.dataOut.CurrentBlock=self.nReadBlocks | |||
|
|
476 | self.dataOut.LastBlock=self.processingHeaderObj.dataBlocksPerFile | |||
|
|
477 | #######################DP####################### | |||
| 461 | self.dataOut.flagNoData = False |
|
478 | self.dataOut.flagNoData = False | |
| 462 |
|
479 | |||
| 463 | self.getBasicHeader() |
|
480 | #self.getBasicHeader() | |
| 464 |
|
481 | |||
| 465 | self.dataOut.realtime = self.online |
|
482 | self.dataOut.realtime = self.online | |
| 466 |
|
483 | |||
| 467 | return self.dataOut.data |
|
484 | return self.dataOut.data | |
| 468 |
|
485 | |||
| 469 |
|
486 | |||
| 470 | @MPDecorator |
|
487 | @MPDecorator | |
| 471 | class VoltageWriter(JRODataWriter, Operation): |
|
488 | class VoltageWriter(JRODataWriter, Operation): | |
| 472 | """ |
|
489 | """ | |
| 473 | Esta clase permite escribir datos de voltajes a archivos procesados (.r). La escritura |
|
490 | Esta clase permite escribir datos de voltajes a archivos procesados (.r). La escritura | |
| 474 | de los datos siempre se realiza por bloques. |
|
491 | de los datos siempre se realiza por bloques. | |
| 475 | """ |
|
492 | """ | |
| 476 |
|
493 | |||
| 477 | ext = ".r" |
|
494 | ext = ".r" | |
| 478 |
|
495 | |||
| 479 | optchar = "D" |
|
496 | optchar = "D" | |
| 480 |
|
497 | |||
| 481 | shapeBuffer = None |
|
498 | shapeBuffer = None | |
| 482 |
|
499 | |||
| 483 | def __init__(self):#, **kwargs): |
|
500 | def __init__(self):#, **kwargs): | |
| 484 | """ |
|
501 | """ | |
| 485 | Inicializador de la clase VoltageWriter para la escritura de datos de espectros. |
|
502 | Inicializador de la clase VoltageWriter para la escritura de datos de espectros. | |
| 486 |
|
503 | |||
| 487 | Affected: |
|
504 | Affected: | |
| 488 | self.dataOut |
|
505 | self.dataOut | |
| 489 |
|
506 | |||
| 490 | Return: None |
|
507 | Return: None | |
| 491 | """ |
|
508 | """ | |
| 492 | Operation.__init__(self)#, **kwargs) |
|
509 | Operation.__init__(self)#, **kwargs) | |
| 493 |
|
510 | |||
| 494 | self.nTotalBlocks = 0 |
|
511 | self.nTotalBlocks = 0 | |
| 495 |
|
512 | |||
| 496 | self.profileIndex = 0 |
|
513 | self.profileIndex = 0 | |
| 497 |
|
514 | |||
| 498 | self.isConfig = False |
|
515 | self.isConfig = False | |
| 499 |
|
516 | |||
| 500 | self.fp = None |
|
517 | self.fp = None | |
| 501 |
|
518 | |||
| 502 | self.flagIsNewFile = 1 |
|
519 | self.flagIsNewFile = 1 | |
| 503 |
|
520 | |||
| 504 | self.blockIndex = 0 |
|
521 | self.blockIndex = 0 | |
| 505 |
|
522 | |||
| 506 | self.flagIsNewBlock = 0 |
|
523 | self.flagIsNewBlock = 0 | |
| 507 |
|
524 | |||
| 508 | self.setFile = None |
|
525 | self.setFile = None | |
| 509 |
|
526 | |||
| 510 | self.dtype = None |
|
527 | self.dtype = None | |
| 511 |
|
528 | |||
| 512 | self.path = None |
|
529 | self.path = None | |
| 513 |
|
530 | |||
| 514 | self.filename = None |
|
531 | self.filename = None | |
| 515 |
|
532 | |||
| 516 | self.basicHeaderObj = BasicHeader(LOCALTIME) |
|
533 | self.basicHeaderObj = BasicHeader(LOCALTIME) | |
| 517 |
|
534 | |||
| 518 | self.systemHeaderObj = SystemHeader() |
|
535 | self.systemHeaderObj = SystemHeader() | |
| 519 |
|
536 | |||
| 520 | self.radarControllerHeaderObj = RadarControllerHeader() |
|
537 | self.radarControllerHeaderObj = RadarControllerHeader() | |
| 521 |
|
538 | |||
| 522 | self.processingHeaderObj = ProcessingHeader() |
|
539 | self.processingHeaderObj = ProcessingHeader() | |
| 523 |
|
540 | |||
| 524 | def hasAllDataInBuffer(self): |
|
541 | def hasAllDataInBuffer(self): | |
| 525 | if self.profileIndex >= self.processingHeaderObj.profilesPerBlock: |
|
542 | if self.profileIndex >= self.processingHeaderObj.profilesPerBlock: | |
| 526 | return 1 |
|
543 | return 1 | |
| 527 | return 0 |
|
544 | return 0 | |
| 528 |
|
545 | |||
| 529 | def setBlockDimension(self): |
|
546 | def setBlockDimension(self): | |
| 530 | """ |
|
547 | """ | |
| 531 | Obtiene las formas dimensionales del los subbloques de datos que componen un bloque |
|
548 | Obtiene las formas dimensionales del los subbloques de datos que componen un bloque | |
| 532 |
|
549 | |||
| 533 | Affected: |
|
550 | Affected: | |
| 534 | self.shape_spc_Buffer |
|
551 | self.shape_spc_Buffer | |
| 535 | self.shape_cspc_Buffer |
|
552 | self.shape_cspc_Buffer | |
| 536 | self.shape_dc_Buffer |
|
553 | self.shape_dc_Buffer | |
| 537 |
|
554 | |||
| 538 | Return: None |
|
555 | Return: None | |
| 539 | """ |
|
556 | """ | |
| 540 | self.shapeBuffer = (self.processingHeaderObj.profilesPerBlock, |
|
557 | self.shapeBuffer = (self.processingHeaderObj.profilesPerBlock, | |
| 541 | self.processingHeaderObj.nHeights, |
|
558 | self.processingHeaderObj.nHeights, | |
| 542 | self.systemHeaderObj.nChannels) |
|
559 | self.systemHeaderObj.nChannels) | |
| 543 |
|
560 | |||
| 544 | self.datablock = numpy.zeros((self.systemHeaderObj.nChannels, |
|
561 | self.datablock = numpy.zeros((self.systemHeaderObj.nChannels, | |
| 545 | self.processingHeaderObj.profilesPerBlock, |
|
562 | self.processingHeaderObj.profilesPerBlock, | |
| 546 | self.processingHeaderObj.nHeights), |
|
563 | self.processingHeaderObj.nHeights), | |
| 547 | dtype=numpy.dtype('complex64')) |
|
564 | dtype=numpy.dtype('complex64')) | |
| 548 |
|
565 | |||
| 549 | def writeBlock(self): |
|
566 | def writeBlock(self): | |
| 550 | """ |
|
567 | """ | |
| 551 | Escribe el buffer en el file designado |
|
568 | Escribe el buffer en el file designado | |
| 552 |
|
569 | |||
| 553 | Affected: |
|
570 | Affected: | |
| 554 | self.profileIndex |
|
571 | self.profileIndex | |
| 555 | self.flagIsNewFile |
|
572 | self.flagIsNewFile | |
| 556 | self.flagIsNewBlock |
|
573 | self.flagIsNewBlock | |
| 557 | self.nTotalBlocks |
|
574 | self.nTotalBlocks | |
| 558 | self.blockIndex |
|
575 | self.blockIndex | |
| 559 |
|
576 | |||
| 560 | Return: None |
|
577 | Return: None | |
| 561 | """ |
|
578 | """ | |
| 562 | data = numpy.zeros(self.shapeBuffer, self.dtype) |
|
579 | data = numpy.zeros(self.shapeBuffer, self.dtype) | |
| 563 |
|
580 | |||
| 564 | junk = numpy.transpose(self.datablock, (1, 2, 0)) |
|
581 | junk = numpy.transpose(self.datablock, (1, 2, 0)) | |
| 565 |
|
582 | |||
| 566 | data['real'] = junk.real |
|
583 | data['real'] = junk.real | |
| 567 | data['imag'] = junk.imag |
|
584 | data['imag'] = junk.imag | |
| 568 |
|
585 | |||
| 569 | data = data.reshape((-1)) |
|
586 | data = data.reshape((-1)) | |
| 570 |
|
587 | |||
| 571 | data.tofile(self.fp) |
|
588 | data.tofile(self.fp) | |
| 572 |
|
589 | |||
| 573 | self.datablock.fill(0) |
|
590 | self.datablock.fill(0) | |
| 574 |
|
591 | |||
| 575 | self.profileIndex = 0 |
|
592 | self.profileIndex = 0 | |
| 576 | self.flagIsNewFile = 0 |
|
593 | self.flagIsNewFile = 0 | |
| 577 | self.flagIsNewBlock = 1 |
|
594 | self.flagIsNewBlock = 1 | |
| 578 |
|
595 | |||
| 579 | self.blockIndex += 1 |
|
596 | self.blockIndex += 1 | |
| 580 | self.nTotalBlocks += 1 |
|
597 | self.nTotalBlocks += 1 | |
| 581 |
|
598 | |||
| 582 | # print "[Writing] Block = %04d" %self.blockIndex |
|
599 | # print "[Writing] Block = %04d" %self.blockIndex | |
| 583 |
|
600 | |||
| 584 | def putData(self): |
|
601 | def putData(self): | |
| 585 | """ |
|
602 | """ | |
| 586 | Setea un bloque de datos y luego los escribe en un file |
|
603 | Setea un bloque de datos y luego los escribe en un file | |
| 587 |
|
604 | |||
| 588 | Affected: |
|
605 | Affected: | |
| 589 | self.flagIsNewBlock |
|
606 | self.flagIsNewBlock | |
| 590 | self.profileIndex |
|
607 | self.profileIndex | |
| 591 |
|
608 | |||
| 592 | Return: |
|
609 | Return: | |
| 593 | 0 : Si no hay data o no hay mas files que puedan escribirse |
|
610 | 0 : Si no hay data o no hay mas files que puedan escribirse | |
| 594 | 1 : Si se escribio la data de un bloque en un file |
|
611 | 1 : Si se escribio la data de un bloque en un file | |
| 595 | """ |
|
612 | """ | |
| 596 | if self.dataOut.flagNoData: |
|
613 | if self.dataOut.flagNoData: | |
| 597 | return 0 |
|
614 | return 0 | |
| 598 |
|
615 | |||
| 599 | self.flagIsNewBlock = 0 |
|
616 | self.flagIsNewBlock = 0 | |
| 600 |
|
617 | |||
| 601 | if self.dataOut.flagDiscontinuousBlock: |
|
618 | if self.dataOut.flagDiscontinuousBlock: | |
| 602 | self.datablock.fill(0) |
|
619 | self.datablock.fill(0) | |
| 603 | self.profileIndex = 0 |
|
620 | self.profileIndex = 0 | |
| 604 | self.setNextFile() |
|
621 | self.setNextFile() | |
| 605 |
|
622 | |||
| 606 | if self.profileIndex == 0: |
|
623 | if self.profileIndex == 0: | |
| 607 | self.setBasicHeader() |
|
624 | self.setBasicHeader() | |
| 608 |
|
625 | |||
| 609 | self.datablock[:, self.profileIndex, :] = self.dataOut.data |
|
626 | self.datablock[:, self.profileIndex, :] = self.dataOut.data | |
| 610 |
|
627 | |||
| 611 | self.profileIndex += 1 |
|
628 | self.profileIndex += 1 | |
| 612 |
|
629 | |||
| 613 | if self.hasAllDataInBuffer(): |
|
630 | if self.hasAllDataInBuffer(): | |
| 614 | # if self.flagIsNewFile: |
|
631 | # if self.flagIsNewFile: | |
| 615 | self.writeNextBlock() |
|
632 | self.writeNextBlock() | |
| 616 | # self.setFirstHeader() |
|
633 | # self.setFirstHeader() | |
| 617 |
|
634 | |||
| 618 | return 1 |
|
635 | return 1 | |
| 619 |
|
636 | |||
| 620 | def __getBlockSize(self): |
|
637 | def __getBlockSize(self): | |
| 621 | ''' |
|
638 | ''' | |
| 622 | Este metodos determina el cantidad de bytes para un bloque de datos de tipo Voltage |
|
639 | Este metodos determina el cantidad de bytes para un bloque de datos de tipo Voltage | |
| 623 | ''' |
|
640 | ''' | |
| 624 |
|
641 | |||
| 625 | dtype_width = self.getDtypeWidth() |
|
642 | dtype_width = self.getDtypeWidth() | |
| 626 |
|
643 | |||
| 627 | blocksize = int(self.dataOut.nHeights * self.dataOut.nChannels * |
|
644 | blocksize = int(self.dataOut.nHeights * self.dataOut.nChannels * | |
| 628 | self.profilesPerBlock * dtype_width * 2) |
|
645 | self.profilesPerBlock * dtype_width * 2) | |
| 629 |
|
646 | |||
| 630 | return blocksize |
|
647 | return blocksize | |
| 631 |
|
648 | |||
| 632 | def setFirstHeader(self): |
|
649 | def setFirstHeader(self): | |
| 633 | """ |
|
650 | """ | |
| 634 | Obtiene una copia del First Header |
|
651 | Obtiene una copia del First Header | |
| 635 |
|
652 | |||
| 636 | Affected: |
|
653 | Affected: | |
| 637 | self.systemHeaderObj |
|
654 | self.systemHeaderObj | |
| 638 | self.radarControllerHeaderObj |
|
655 | self.radarControllerHeaderObj | |
| 639 | self.dtype |
|
656 | self.dtype | |
| 640 |
|
657 | |||
| 641 | Return: |
|
658 | Return: | |
| 642 | None |
|
659 | None | |
| 643 | """ |
|
660 | """ | |
| 644 |
|
661 | |||
| 645 | self.systemHeaderObj = self.dataOut.systemHeaderObj.copy() |
|
662 | self.systemHeaderObj = self.dataOut.systemHeaderObj.copy() | |
| 646 | self.systemHeaderObj.nChannels = self.dataOut.nChannels |
|
663 | self.systemHeaderObj.nChannels = self.dataOut.nChannels | |
| 647 | self.radarControllerHeaderObj = self.dataOut.radarControllerHeaderObj.copy() |
|
664 | self.radarControllerHeaderObj = self.dataOut.radarControllerHeaderObj.copy() | |
| 648 |
|
665 | |||
| 649 | self.processingHeaderObj.dtype = 0 # Voltage |
|
666 | self.processingHeaderObj.dtype = 0 # Voltage | |
| 650 | self.processingHeaderObj.blockSize = self.__getBlockSize() |
|
667 | self.processingHeaderObj.blockSize = self.__getBlockSize() | |
| 651 | self.processingHeaderObj.profilesPerBlock = self.profilesPerBlock |
|
668 | self.processingHeaderObj.profilesPerBlock = self.profilesPerBlock | |
| 652 | self.processingHeaderObj.dataBlocksPerFile = self.blocksPerFile |
|
669 | self.processingHeaderObj.dataBlocksPerFile = self.blocksPerFile | |
| 653 | # podria ser 1 o self.dataOut.processingHeaderObj.nWindows |
|
670 | # podria ser 1 o self.dataOut.processingHeaderObj.nWindows | |
| 654 | self.processingHeaderObj.nWindows = 1 |
|
671 | self.processingHeaderObj.nWindows = 1 | |
| 655 | self.processingHeaderObj.nCohInt = self.dataOut.nCohInt |
|
672 | self.processingHeaderObj.nCohInt = self.dataOut.nCohInt | |
| 656 | # Cuando la data de origen es de tipo Voltage |
|
673 | # Cuando la data de origen es de tipo Voltage | |
| 657 | self.processingHeaderObj.nIncohInt = 1 |
|
674 | self.processingHeaderObj.nIncohInt = 1 | |
| 658 | # Cuando la data de origen es de tipo Voltage |
|
675 | # Cuando la data de origen es de tipo Voltage | |
| 659 | self.processingHeaderObj.totalSpectra = 0 |
|
676 | self.processingHeaderObj.totalSpectra = 0 | |
| 660 |
|
677 | |||
| 661 | if self.dataOut.code is not None: |
|
678 | if self.dataOut.code is not None: | |
| 662 | self.processingHeaderObj.code = self.dataOut.code |
|
679 | self.processingHeaderObj.code = self.dataOut.code | |
| 663 | self.processingHeaderObj.nCode = self.dataOut.nCode |
|
680 | self.processingHeaderObj.nCode = self.dataOut.nCode | |
| 664 | self.processingHeaderObj.nBaud = self.dataOut.nBaud |
|
681 | self.processingHeaderObj.nBaud = self.dataOut.nBaud | |
| 665 |
|
682 | |||
| 666 | if self.processingHeaderObj.nWindows != 0: |
|
683 | if self.processingHeaderObj.nWindows != 0: | |
| 667 | self.processingHeaderObj.firstHeight = self.dataOut.heightList[0] |
|
684 | self.processingHeaderObj.firstHeight = self.dataOut.heightList[0] | |
| 668 | self.processingHeaderObj.deltaHeight = self.dataOut.heightList[1] - \ |
|
685 | self.processingHeaderObj.deltaHeight = self.dataOut.heightList[1] - \ | |
| 669 | self.dataOut.heightList[0] |
|
686 | self.dataOut.heightList[0] | |
| 670 | self.processingHeaderObj.nHeights = self.dataOut.nHeights |
|
687 | self.processingHeaderObj.nHeights = self.dataOut.nHeights | |
| 671 | self.processingHeaderObj.samplesWin = self.dataOut.nHeights |
|
688 | self.processingHeaderObj.samplesWin = self.dataOut.nHeights | |
| 672 |
|
689 | |||
| 673 | self.processingHeaderObj.processFlags = self.getProcessFlags() |
|
690 | self.processingHeaderObj.processFlags = self.getProcessFlags() | |
| 674 |
|
691 | |||
| 675 | self.setBasicHeader() |
|
692 | self.setBasicHeader() | |
| 676 | No newline at end of file |
|
|||
| @@ -1,16 +1,22 | |||||
| 1 | ''' |
|
1 | ''' | |
| 2 |
|
2 | |||
| 3 | $Author: murco $ |
|
3 | $Author: murco $ | |
| 4 | $Id: Processor.py 1 2012-11-12 18:56:07Z murco $ |
|
4 | $Id: Processor.py 1 2012-11-12 18:56:07Z murco $ | |
| 5 | ''' |
|
5 | ''' | |
| 6 |
|
6 | |||
| 7 | from .jroproc_voltage import * |
|
7 | from .jroproc_voltage import * | |
| 8 | from .jroproc_spectra import * |
|
8 | from .jroproc_spectra import * | |
| 9 | from .jroproc_heispectra import * |
|
9 | from .jroproc_heispectra import * | |
| 10 | from .jroproc_amisr import * |
|
10 | from .jroproc_amisr import * | |
| 11 | from .jroproc_correlation import * |
|
11 | from .jroproc_correlation import * | |
| 12 | from .jroproc_parameters import * |
|
12 | from .jroproc_parameters import * | |
| 13 | from .jroproc_spectra_lags import * |
|
13 | from .jroproc_spectra_lags import * | |
| 14 | from .jroproc_spectra_acf import * |
|
14 | from .jroproc_spectra_acf import * | |
| 15 | from .bltrproc_parameters import * |
|
15 | from .bltrproc_parameters import * | |
| 16 | from .pxproc_parameters import * |
|
16 | from .pxproc_parameters import * | |
|
|
17 | ||||
|
|
18 | ||||
|
|
19 | ###########DP########### | |||
|
|
20 | from .jroproc_voltage_lags import * | |||
|
|
21 | ###########DP########### | |||
|
|
22 | from .jroproc_spectra_lags_faraday import * | |||
| @@ -1,206 +1,206 | |||||
| 1 | ''' |
|
1 | ''' | |
| 2 | Base clases to create Processing units and operations, the MPDecorator |
|
2 | Base clases to create Processing units and operations, the MPDecorator | |
| 3 | must be used in plotting and writing operations to allow to run as an |
|
3 | must be used in plotting and writing operations to allow to run as an | |
| 4 | external process. |
|
4 | external process. | |
| 5 | ''' |
|
5 | ''' | |
| 6 |
|
6 | |||
| 7 | import os |
|
7 | import os | |
| 8 | import inspect |
|
8 | import inspect | |
| 9 | import zmq |
|
9 | import zmq | |
| 10 | import time |
|
10 | import time | |
| 11 | import pickle |
|
11 | import pickle | |
| 12 | import traceback |
|
12 | import traceback | |
| 13 | from threading import Thread |
|
13 | from threading import Thread | |
| 14 | from multiprocessing import Process, Queue |
|
14 | from multiprocessing import Process, Queue | |
| 15 | from schainpy.utils import log |
|
15 | from schainpy.utils import log | |
| 16 |
|
16 | |||
| 17 | QUEUE_SIZE = int(os.environ.get('QUEUE_MAX_SIZE', '10')) |
|
17 | QUEUE_SIZE = int(os.environ.get('QUEUE_MAX_SIZE', '10')) | |
| 18 |
|
18 | |||
| 19 | class ProcessingUnit(object): |
|
19 | class ProcessingUnit(object): | |
| 20 | ''' |
|
20 | ''' | |
| 21 | Base class to create Signal Chain Units |
|
21 | Base class to create Signal Chain Units | |
| 22 | ''' |
|
22 | ''' | |
| 23 |
|
23 | |||
| 24 | proc_type = 'processing' |
|
24 | proc_type = 'processing' | |
| 25 |
|
25 | |||
| 26 | def __init__(self): |
|
26 | def __init__(self): | |
| 27 |
|
27 | |||
| 28 | self.dataIn = None |
|
28 | self.dataIn = None | |
| 29 | self.dataOut = None |
|
29 | self.dataOut = None | |
| 30 | self.isConfig = False |
|
30 | self.isConfig = False | |
| 31 | self.operations = [] |
|
31 | self.operations = [] | |
| 32 |
|
32 | |||
| 33 | def setInput(self, unit): |
|
33 | def setInput(self, unit): | |
| 34 |
|
34 | |||
| 35 | self.dataIn = unit.dataOut |
|
35 | self.dataIn = unit.dataOut | |
| 36 |
|
36 | |||
| 37 | def getAllowedArgs(self): |
|
37 | def getAllowedArgs(self): | |
| 38 | if hasattr(self, '__attrs__'): |
|
38 | if hasattr(self, '__attrs__'): | |
| 39 | return self.__attrs__ |
|
39 | return self.__attrs__ | |
| 40 | else: |
|
40 | else: | |
| 41 | return inspect.getargspec(self.run).args |
|
41 | return inspect.getargspec(self.run).args | |
| 42 |
|
42 | |||
| 43 | def addOperation(self, conf, operation): |
|
43 | def addOperation(self, conf, operation): | |
| 44 | ''' |
|
44 | ''' | |
| 45 | ''' |
|
45 | ''' | |
| 46 |
|
46 | |||
| 47 | self.operations.append((operation, conf.type, conf.getKwargs())) |
|
47 | self.operations.append((operation, conf.type, conf.getKwargs())) | |
| 48 |
|
48 | |||
| 49 | def getOperationObj(self, objId): |
|
49 | def getOperationObj(self, objId): | |
| 50 |
|
50 | |||
| 51 | if objId not in list(self.operations.keys()): |
|
51 | if objId not in list(self.operations.keys()): | |
| 52 | return None |
|
52 | return None | |
| 53 |
|
53 | |||
| 54 | return self.operations[objId] |
|
54 | return self.operations[objId] | |
| 55 |
|
55 | |||
| 56 | def call(self, **kwargs): |
|
56 | def call(self, **kwargs): | |
| 57 | ''' |
|
57 | ''' | |
| 58 | ''' |
|
58 | ''' | |
| 59 |
|
59 | |||
| 60 | try: |
|
60 | try: | |
| 61 | if self.dataIn is not None and self.dataIn.flagNoData and not self.dataIn.error: |
|
61 | if self.dataIn is not None and self.dataIn.flagNoData and not self.dataIn.error: | |
| 62 | return self.dataIn.isReady() |
|
62 | return self.dataIn.isReady() | |
| 63 | elif self.dataIn is None or not self.dataIn.error: |
|
63 | elif self.dataIn is None or not self.dataIn.error: | |
| 64 | self.run(**kwargs) |
|
64 | self.run(**kwargs) | |
| 65 | elif self.dataIn.error: |
|
65 | elif self.dataIn.error: | |
| 66 | self.dataOut.error = self.dataIn.error |
|
66 | self.dataOut.error = self.dataIn.error | |
| 67 | self.dataOut.flagNoData = True |
|
67 | self.dataOut.flagNoData = True | |
| 68 | except: |
|
68 | except: | |
| 69 | err = traceback.format_exc() |
|
69 | err = traceback.format_exc() | |
| 70 | if 'SchainWarning' in err: |
|
70 | if 'SchainWarning' in err: | |
| 71 | log.warning(err.split('SchainWarning:')[-1].split('\n')[0].strip(), self.name) |
|
71 | log.warning(err.split('SchainWarning:')[-1].split('\n')[0].strip(), self.name) | |
| 72 | elif 'SchainError' in err: |
|
72 | elif 'SchainError' in err: | |
| 73 | log.error(err.split('SchainError:')[-1].split('\n')[0].strip(), self.name) |
|
73 | log.error(err.split('SchainError:')[-1].split('\n')[0].strip(), self.name) | |
| 74 | else: |
|
74 | else: | |
| 75 | log.error(err, self.name) |
|
75 | log.error(err, self.name) | |
| 76 | self.dataOut.error = True |
|
76 | self.dataOut.error = True | |
| 77 |
|
77 | |||
| 78 | for op, optype, opkwargs in self.operations: |
|
78 | for op, optype, opkwargs in self.operations: | |
| 79 | aux = self.dataOut.copy() |
|
79 | aux = self.dataOut.copy() | |
| 80 | if optype == 'other' and not self.dataOut.flagNoData: |
|
80 | if optype == 'other' and not self.dataOut.flagNoData: | |
| 81 | self.dataOut = op.run(self.dataOut, **opkwargs) |
|
81 | self.dataOut = op.run(self.dataOut, **opkwargs) | |
| 82 | elif optype == 'external' and not self.dataOut.flagNoData: |
|
82 | elif optype == 'external' and not self.dataOut.flagNoData: | |
| 83 | op.queue.put(aux) |
|
83 | op.queue.put(aux) | |
| 84 | elif optype == 'external' and self.dataOut.error: |
|
84 | elif optype == 'external' and self.dataOut.error: | |
| 85 | op.queue.put(aux) |
|
85 | op.queue.put(aux) | |
| 86 |
|
86 | |||
| 87 | return 'Error' if self.dataOut.error else self.dataOut.isReady() |
|
87 | return 'Error' if self.dataOut.error else self.dataOut.isReady() | |
| 88 |
|
88 | |||
| 89 | def setup(self): |
|
89 | def setup(self): | |
| 90 |
|
90 | |||
| 91 | raise NotImplementedError |
|
91 | raise NotImplementedError | |
| 92 |
|
92 | |||
| 93 | def run(self): |
|
93 | def run(self): | |
| 94 |
|
94 | |||
| 95 | raise NotImplementedError |
|
95 | raise NotImplementedError | |
| 96 |
|
96 | |||
| 97 | def close(self): |
|
97 | def close(self): | |
| 98 |
|
98 | |||
| 99 | return |
|
99 | return | |
| 100 |
|
100 | |||
| 101 |
|
101 | |||
| 102 | class Operation(object): |
|
102 | class Operation(object): | |
| 103 |
|
103 | |||
| 104 | ''' |
|
104 | ''' | |
| 105 | ''' |
|
105 | ''' | |
| 106 |
|
106 | |||
| 107 | proc_type = 'operation' |
|
107 | proc_type = 'operation' | |
| 108 |
|
108 | |||
| 109 | def __init__(self): |
|
109 | def __init__(self): | |
| 110 |
|
110 | |||
| 111 | self.id = None |
|
111 | self.id = None | |
| 112 | self.isConfig = False |
|
112 | self.isConfig = False | |
| 113 |
|
113 | |||
| 114 | if not hasattr(self, 'name'): |
|
114 | if not hasattr(self, 'name'): | |
| 115 | self.name = self.__class__.__name__ |
|
115 | self.name = self.__class__.__name__ | |
| 116 |
|
116 | |||
| 117 | def getAllowedArgs(self): |
|
117 | def getAllowedArgs(self): | |
| 118 | if hasattr(self, '__attrs__'): |
|
118 | if hasattr(self, '__attrs__'): | |
| 119 | return self.__attrs__ |
|
119 | return self.__attrs__ | |
| 120 | else: |
|
120 | else: | |
| 121 | return inspect.getargspec(self.run).args |
|
121 | return inspect.getargspec(self.run).args | |
| 122 |
|
122 | |||
| 123 | def setup(self): |
|
123 | def setup(self): | |
| 124 |
|
124 | |||
| 125 | self.isConfig = True |
|
125 | self.isConfig = True | |
| 126 |
|
126 | |||
| 127 | raise NotImplementedError |
|
127 | raise NotImplementedError | |
| 128 |
|
128 | |||
| 129 | def run(self, dataIn, **kwargs): |
|
129 | def run(self, dataIn, **kwargs): | |
| 130 | """ |
|
130 | """ | |
| 131 | Realiza las operaciones necesarias sobre la dataIn.data y actualiza los |
|
131 | Realiza las operaciones necesarias sobre la dataIn.data y actualiza los | |
| 132 | atributos del objeto dataIn. |
|
132 | atributos del objeto dataIn. | |
| 133 |
|
133 | |||
| 134 | Input: |
|
134 | Input: | |
| 135 |
|
135 | |||
| 136 | dataIn : objeto del tipo JROData |
|
136 | dataIn : objeto del tipo JROData | |
| 137 |
|
137 | |||
| 138 | Return: |
|
138 | Return: | |
| 139 |
|
139 | |||
| 140 | None |
|
140 | None | |
| 141 |
|
141 | |||
| 142 | Affected: |
|
142 | Affected: | |
| 143 | __buffer : buffer de recepcion de datos. |
|
143 | __buffer : buffer de recepcion de datos. | |
| 144 |
|
144 | |||
| 145 | """ |
|
145 | """ | |
| 146 | if not self.isConfig: |
|
146 | if not self.isConfig: | |
| 147 | self.setup(**kwargs) |
|
147 | self.setup(**kwargs) | |
| 148 |
|
148 | |||
| 149 | raise NotImplementedError |
|
149 | raise NotImplementedError | |
| 150 |
|
150 | |||
| 151 | def close(self): |
|
151 | def close(self): | |
| 152 |
|
152 | |||
| 153 | return |
|
153 | return | |
| 154 |
|
154 | |||
| 155 |
|
155 | |||
| 156 | def MPDecorator(BaseClass): |
|
156 | def MPDecorator(BaseClass): | |
| 157 | """ |
|
157 | """ | |
| 158 | Multiprocessing class decorator |
|
158 | Multiprocessing class decorator | |
| 159 |
|
159 | |||
| 160 | This function add multiprocessing features to a BaseClass. |
|
160 | This function add multiprocessing features to a BaseClass. | |
| 161 | """ |
|
161 | """ | |
| 162 |
|
162 | |||
| 163 | class MPClass(BaseClass, Process): |
|
163 | class MPClass(BaseClass, Process): | |
| 164 |
|
164 | |||
| 165 | def __init__(self, *args, **kwargs): |
|
165 | def __init__(self, *args, **kwargs): | |
| 166 | super(MPClass, self).__init__() |
|
166 | super(MPClass, self).__init__() | |
| 167 | Process.__init__(self) |
|
167 | Process.__init__(self) | |
| 168 |
|
168 | |||
| 169 | self.args = args |
|
169 | self.args = args | |
| 170 | self.kwargs = kwargs |
|
170 | self.kwargs = kwargs | |
| 171 | self.t = time.time() |
|
171 | self.t = time.time() | |
| 172 | self.op_type = 'external' |
|
172 | self.op_type = 'external' | |
| 173 | self.name = BaseClass.__name__ |
|
173 | self.name = BaseClass.__name__ | |
| 174 | self.__doc__ = BaseClass.__doc__ |
|
174 | self.__doc__ = BaseClass.__doc__ | |
| 175 |
|
175 | |||
| 176 | if 'plot' in self.name.lower() and not self.name.endswith('_'): |
|
176 | if 'plot' in self.name.lower() and not self.name.endswith('_'): | |
| 177 | self.name = '{}{}'.format(self.CODE.upper(), 'Plot') |
|
177 | self.name = '{}{}'.format(self.CODE.upper(), 'Plot') | |
| 178 |
|
178 | |||
| 179 | self.start_time = time.time() |
|
179 | self.start_time = time.time() | |
| 180 | self.err_queue = args[3] |
|
180 | self.err_queue = args[3] | |
| 181 | self.queue = Queue(maxsize=QUEUE_SIZE) |
|
181 | self.queue = Queue(maxsize=QUEUE_SIZE) | |
| 182 | self.myrun = BaseClass.run |
|
182 | self.myrun = BaseClass.run | |
| 183 |
|
183 | |||
| 184 | def run(self): |
|
184 | def run(self): | |
| 185 |
|
185 | |||
| 186 | while True: |
|
186 | while True: | |
| 187 |
|
187 | |||
| 188 | dataOut = self.queue.get() |
|
188 | dataOut = self.queue.get() | |
| 189 |
|
189 | |||
| 190 | if not dataOut.error: |
|
190 | if not dataOut.error: | |
| 191 | try: |
|
191 | try: | |
| 192 | BaseClass.run(self, dataOut, **self.kwargs) |
|
192 | BaseClass.run(self, dataOut, **self.kwargs) | |
| 193 | except: |
|
193 | except: | |
| 194 | err = traceback.format_exc() |
|
194 | err = traceback.format_exc() | |
| 195 | log.error(err, self.name) |
|
195 | log.error(err, self.name) | |
| 196 | else: |
|
196 | else: | |
| 197 | break |
|
197 | break | |
| 198 |
|
198 | |||
| 199 | self.close() |
|
199 | self.close() | |
| 200 |
|
200 | |||
| 201 | def close(self): |
|
201 | def close(self): | |
| 202 |
|
202 | |||
| 203 | BaseClass.close(self) |
|
203 | BaseClass.close(self) | |
| 204 | log.success('Done...(Time:{:4.2f} secs)'.format(time.time()-self.start_time), self.name) |
|
204 | log.success('Done...(Time:{:4.2f} secs)'.format(time.time()-self.start_time), self.name) | |
| 205 |
|
205 | |||
| 206 | return MPClass |
|
206 | return MPClass | |
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| 1 | NO CONTENT: modified file |
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| The requested commit or file is too big and content was truncated. Show full diff | |||||
| 1 | NO CONTENT: modified file |
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| The requested commit or file is too big and content was truncated. Show full diff | |||||
| 1 | NO CONTENT: modified file |
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NO CONTENT: modified file | ||
| The requested commit or file is too big and content was truncated. Show full diff | |||||
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