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1 | #from schainpy.model.data.jrodata import * | |
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2 | # from schainpy.model.io.jrodataIO import * | |
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3 | # from schainpy.model.proc.jroprocessing import * | |
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4 | # from schainpy.model.graphics.jroplot import * | |
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5 | # from schainpy.model.utils.jroutils import * | |
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6 | # from schainpy.serializer import * | |
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7 | 1 |
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8 | 2 | from .graphics import * |
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9 | 3 | from .data import * |
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10 | 4 | from .io import * |
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11 | 5 | from .proc import * |
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12 | 6 | from .utils import * |
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1 | 1 | |
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2 | 2 | import os |
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3 | 3 | import sys |
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4 | 4 | import zmq |
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5 | 5 | import time |
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6 | 6 | import numpy |
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7 | 7 | import datetime |
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8 | 8 | from functools import wraps |
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9 | 9 | from threading import Thread |
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10 | 10 | import matplotlib |
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11 | 11 | |
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12 | 12 | if 'BACKEND' in os.environ: |
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13 | 13 | matplotlib.use(os.environ['BACKEND']) |
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14 | 14 | elif 'linux' in sys.platform: |
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15 | 15 | matplotlib.use("TkAgg") |
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16 | 16 | elif 'darwin' in sys.platform: |
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17 | 17 | matplotlib.use('WxAgg') |
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18 | 18 | else: |
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19 | 19 | from schainpy.utils import log |
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20 | 20 | log.warning('Using default Backend="Agg"', 'INFO') |
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21 | 21 | matplotlib.use('Agg') |
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22 | 22 | |
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23 | 23 | import matplotlib.pyplot as plt |
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24 | 24 | from matplotlib.patches import Polygon |
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25 | 25 | from mpl_toolkits.axes_grid1 import make_axes_locatable |
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26 | 26 | from matplotlib.ticker import FuncFormatter, LinearLocator, MultipleLocator |
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27 | 27 | |
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28 | 28 | from schainpy.model.data.jrodata import PlotterData |
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29 | 29 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator |
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30 | 30 | from schainpy.utils import log |
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31 | 31 | |
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32 | 32 | jet_values = matplotlib.pyplot.get_cmap('jet', 100)(numpy.arange(100))[10:90] |
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33 | 33 | blu_values = matplotlib.pyplot.get_cmap( |
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34 | 34 | 'seismic_r', 20)(numpy.arange(20))[10:15] |
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35 | 35 | ncmap = matplotlib.colors.LinearSegmentedColormap.from_list( |
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36 | 36 | 'jro', numpy.vstack((blu_values, jet_values))) |
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37 | 37 | matplotlib.pyplot.register_cmap(cmap=ncmap) |
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38 | 38 | |
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39 | 39 | CMAPS = [plt.get_cmap(s) for s in ('jro', 'jet', 'viridis', |
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40 | 40 | 'plasma', 'inferno', 'Greys', 'seismic', 'bwr', 'coolwarm')] |
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41 | 41 | |
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42 | 42 | EARTH_RADIUS = 6.3710e3 |
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43 | 43 | |
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44 | 44 | def ll2xy(lat1, lon1, lat2, lon2): |
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45 | 45 | |
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46 | 46 | p = 0.017453292519943295 |
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47 | 47 | a = 0.5 - numpy.cos((lat2 - lat1) * p)/2 + numpy.cos(lat1 * p) * \ |
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48 | 48 | numpy.cos(lat2 * p) * (1 - numpy.cos((lon2 - lon1) * p)) / 2 |
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49 | 49 | r = 12742 * numpy.arcsin(numpy.sqrt(a)) |
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50 | 50 | theta = numpy.arctan2(numpy.sin((lon2-lon1)*p)*numpy.cos(lat2*p), numpy.cos(lat1*p) |
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51 | 51 | * numpy.sin(lat2*p)-numpy.sin(lat1*p)*numpy.cos(lat2*p)*numpy.cos((lon2-lon1)*p)) |
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52 | 52 | theta = -theta + numpy.pi/2 |
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53 | 53 | return r*numpy.cos(theta), r*numpy.sin(theta) |
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54 | 54 | |
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55 | 55 | |
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56 | 56 | def km2deg(km): |
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57 | 57 | ''' |
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58 | 58 | Convert distance in km to degrees |
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59 | 59 | ''' |
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60 | 60 | |
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61 | 61 | return numpy.rad2deg(km/EARTH_RADIUS) |
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62 | 62 | |
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63 | 63 | |
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64 | 64 | def figpause(interval): |
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65 | 65 | backend = plt.rcParams['backend'] |
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66 | 66 | if backend in matplotlib.rcsetup.interactive_bk: |
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67 | 67 | figManager = matplotlib._pylab_helpers.Gcf.get_active() |
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68 | 68 | if figManager is not None: |
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69 | 69 | canvas = figManager.canvas |
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70 | 70 | if canvas.figure.stale: |
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71 | 71 | canvas.draw() |
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72 | 72 | try: |
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73 | 73 | canvas.start_event_loop(interval) |
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74 | 74 | except: |
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75 | 75 | pass |
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76 | 76 | return |
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77 | 77 | |
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78 | 78 | |
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79 | 79 | def popup(message): |
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80 | 80 | ''' |
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81 | 81 | ''' |
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82 | 82 | |
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83 | 83 | fig = plt.figure(figsize=(12, 8), facecolor='r') |
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84 | 84 | text = '\n'.join([s.strip() for s in message.split(':')]) |
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85 | 85 | fig.text(0.01, 0.5, text, ha='left', va='center', |
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86 | 86 | size='20', weight='heavy', color='w') |
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87 | 87 | fig.show() |
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88 | 88 | figpause(1000) |
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89 | 89 | |
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90 | 90 | |
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91 | 91 | class Throttle(object): |
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92 | 92 | ''' |
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93 | 93 | Decorator that prevents a function from being called more than once every |
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94 | 94 | time period. |
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95 | 95 | To create a function that cannot be called more than once a minute, but |
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96 | 96 | will sleep until it can be called: |
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97 | 97 | @Throttle(minutes=1) |
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98 | 98 | def foo(): |
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99 | 99 | pass |
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100 | 100 | |
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101 | 101 | for i in range(10): |
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102 | 102 | foo() |
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103 | 103 | print "This function has run %s times." % i |
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104 | 104 | ''' |
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105 | 105 | |
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106 | 106 | def __init__(self, seconds=0, minutes=0, hours=0): |
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107 | 107 | self.throttle_period = datetime.timedelta( |
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108 | 108 | seconds=seconds, minutes=minutes, hours=hours |
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109 | 109 | ) |
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110 | 110 | |
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111 | 111 | self.time_of_last_call = datetime.datetime.min |
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112 | 112 | |
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113 | 113 | def __call__(self, fn): |
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114 | 114 | @wraps(fn) |
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115 | 115 | def wrapper(*args, **kwargs): |
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116 | 116 | coerce = kwargs.pop('coerce', None) |
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117 | 117 | if coerce: |
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118 | 118 | self.time_of_last_call = datetime.datetime.now() |
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119 | 119 | return fn(*args, **kwargs) |
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120 | 120 | else: |
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121 | 121 | now = datetime.datetime.now() |
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122 | 122 | time_since_last_call = now - self.time_of_last_call |
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123 | 123 | time_left = self.throttle_period - time_since_last_call |
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124 | 124 | |
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125 | 125 | if time_left > datetime.timedelta(seconds=0): |
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126 | 126 | return |
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127 | 127 | |
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128 | 128 | self.time_of_last_call = datetime.datetime.now() |
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129 | 129 | return fn(*args, **kwargs) |
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130 | 130 | |
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131 | 131 | return wrapper |
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132 | 132 | |
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133 | 133 | def apply_throttle(value): |
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134 | 134 | |
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135 | 135 | @Throttle(seconds=value) |
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136 | 136 | def fnThrottled(fn): |
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137 | 137 | fn() |
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138 | 138 | |
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139 | 139 | return fnThrottled |
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140 | 140 | |
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141 | 141 | |
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142 | 142 | @MPDecorator |
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143 | 143 | class Plot(Operation): |
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144 | 144 | ''' |
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145 | 145 | Base class for Schain plotting operations |
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146 | 146 | ''' |
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147 | 147 | |
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148 | 148 | CODE = 'Figure' |
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149 | 149 | colormap = 'jet' |
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150 | 150 | bgcolor = 'white' |
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151 | 151 | __missing = 1E30 |
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152 | 152 | |
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153 | 153 | __attrs__ = ['show', 'save', 'xmin', 'xmax', 'ymin', 'ymax', 'zmin', 'zmax', |
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154 | 154 | 'zlimits', 'xlabel', 'ylabel', 'xaxis', 'cb_label', 'title', |
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155 | 155 | 'colorbar', 'bgcolor', 'width', 'height', 'localtime', 'oneFigure', |
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156 | 156 | 'showprofile', 'decimation', 'pause'] |
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157 | 157 | |
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158 | 158 | def __init__(self): |
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159 | 159 | |
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160 | 160 | Operation.__init__(self) |
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161 | 161 | self.isConfig = False |
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162 | 162 | self.isPlotConfig = False |
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163 | 163 | self.save_counter = 1 |
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164 | 164 | self.sender_counter = 1 |
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165 | 165 | self.data = None |
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166 | 166 | |
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167 | 167 | def __fmtTime(self, x, pos): |
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168 | 168 | ''' |
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169 | 169 | ''' |
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170 | 170 | |
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171 | 171 | return '{}'.format(self.getDateTime(x).strftime('%H:%M')) |
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172 | 172 | |
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173 | 173 | def __setup(self, **kwargs): |
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174 | 174 | ''' |
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175 | 175 | Initialize variables |
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176 | 176 | ''' |
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177 | 177 | |
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178 | 178 | self.figures = [] |
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179 | 179 | self.axes = [] |
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180 | 180 | self.cb_axes = [] |
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181 | 181 | self.localtime = kwargs.pop('localtime', True) |
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182 | 182 | self.show = kwargs.get('show', True) |
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183 | 183 | self.save = kwargs.get('save', False) |
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184 |
self.save_period = kwargs.get('save_period', |
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184 | self.save_period = kwargs.get('save_period', 1) | |
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185 | 185 | self.ftp = kwargs.get('ftp', False) |
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186 | 186 | self.colormap = kwargs.get('colormap', self.colormap) |
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187 | 187 | self.colormap_coh = kwargs.get('colormap_coh', 'jet') |
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188 | 188 | self.colormap_phase = kwargs.get('colormap_phase', 'RdBu_r') |
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189 | 189 | self.colormaps = kwargs.get('colormaps', None) |
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190 | 190 | self.bgcolor = kwargs.get('bgcolor', self.bgcolor) |
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191 | 191 | self.showprofile = kwargs.get('showprofile', False) |
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192 | 192 | self.title = kwargs.get('wintitle', self.CODE.upper()) |
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193 | 193 | self.cb_label = kwargs.get('cb_label', None) |
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194 | 194 | self.cb_labels = kwargs.get('cb_labels', None) |
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195 | 195 | self.labels = kwargs.get('labels', None) |
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196 | 196 | self.xaxis = kwargs.get('xaxis', 'frequency') |
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197 | 197 | self.zmin = kwargs.get('zmin', None) |
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198 | 198 | self.zmax = kwargs.get('zmax', None) |
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199 | 199 | self.zlimits = kwargs.get('zlimits', None) |
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200 | 200 | self.xmin = kwargs.get('xmin', None) |
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201 | 201 | self.xmax = kwargs.get('xmax', None) |
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202 | 202 | self.xrange = kwargs.get('xrange', 24) |
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203 | 203 | self.xscale = kwargs.get('xscale', None) |
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204 | 204 | self.ymin = kwargs.get('ymin', None) |
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205 | 205 | self.ymax = kwargs.get('ymax', None) |
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206 | 206 | self.yscale = kwargs.get('yscale', None) |
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207 | 207 | self.xlabel = kwargs.get('xlabel', None) |
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208 | 208 | self.decimation = kwargs.get('decimation', None) |
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209 | 209 | self.showSNR = kwargs.get('showSNR', False) |
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210 | 210 | self.oneFigure = kwargs.get('oneFigure', True) |
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211 | 211 | self.width = kwargs.get('width', None) |
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212 | 212 | self.height = kwargs.get('height', None) |
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213 | 213 | self.colorbar = kwargs.get('colorbar', True) |
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214 | 214 | self.factors = kwargs.get('factors', [1, 1, 1, 1, 1, 1, 1, 1]) |
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215 | 215 | self.channels = kwargs.get('channels', None) |
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216 | 216 | self.titles = kwargs.get('titles', []) |
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217 | 217 | self.polar = False |
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218 | 218 | self.type = kwargs.get('type', 'iq') |
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219 | 219 | self.grid = kwargs.get('grid', False) |
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220 | 220 | self.pause = kwargs.get('pause', False) |
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221 | 221 | self.save_labels = kwargs.get('save_labels', None) |
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222 | 222 | self.realtime = kwargs.get('realtime', True) |
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223 | 223 | self.buffering = kwargs.get('buffering', True) |
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224 | 224 | self.throttle = kwargs.get('throttle', 2) |
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225 | 225 | self.exp_code = kwargs.get('exp_code', None) |
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226 | 226 | self.plot_server = kwargs.get('plot_server', False) |
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227 | 227 | self.sender_period = kwargs.get('sender_period', 1) |
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228 | 228 | self.__throttle_plot = apply_throttle(self.throttle) |
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229 | 229 | self.data = PlotterData( |
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230 | 230 | self.CODE, self.throttle, self.exp_code, self.buffering, snr=self.showSNR) |
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231 | 231 | |
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232 | 232 | if self.plot_server: |
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233 | 233 | if not self.plot_server.startswith('tcp://'): |
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234 | 234 | self.plot_server = 'tcp://{}'.format(self.plot_server) |
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235 | 235 | log.success( |
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236 | 236 | 'Sending to server: {}'.format(self.plot_server), |
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237 | 237 | self.name |
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238 | 238 | ) |
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239 | 239 | if 'plot_name' in kwargs: |
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240 | 240 | self.plot_name = kwargs['plot_name'] |
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241 | 241 | |
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242 | 242 | def __setup_plot(self): |
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243 | 243 | ''' |
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244 | 244 | Common setup for all figures, here figures and axes are created |
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245 | 245 | ''' |
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246 | 246 | |
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247 | 247 | self.setup() |
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248 | 248 | |
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249 | 249 | self.time_label = 'LT' if self.localtime else 'UTC' |
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250 | 250 | |
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251 | 251 | if self.width is None: |
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252 | 252 | self.width = 8 |
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253 | 253 | |
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254 | 254 | self.figures = [] |
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255 | 255 | self.axes = [] |
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256 | 256 | self.cb_axes = [] |
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257 | 257 | self.pf_axes = [] |
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258 | 258 | self.cmaps = [] |
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259 | 259 | |
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260 | 260 | size = '15%' if self.ncols == 1 else '30%' |
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261 | 261 | pad = '4%' if self.ncols == 1 else '8%' |
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262 | 262 | |
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263 | 263 | if self.oneFigure: |
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264 | 264 | if self.height is None: |
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265 | 265 | self.height = 1.4 * self.nrows + 1 |
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266 | 266 | fig = plt.figure(figsize=(self.width, self.height), |
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267 | 267 | edgecolor='k', |
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268 | 268 | facecolor='w') |
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269 | 269 | self.figures.append(fig) |
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270 | 270 | for n in range(self.nplots): |
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271 | 271 | ax = fig.add_subplot(self.nrows, self.ncols, |
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272 | 272 | n + 1, polar=self.polar) |
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273 | 273 | ax.tick_params(labelsize=8) |
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274 | 274 | ax.firsttime = True |
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275 | 275 | ax.index = 0 |
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276 | 276 | ax.press = None |
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277 | 277 | self.axes.append(ax) |
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278 | 278 | if self.showprofile: |
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279 | 279 | cax = self.__add_axes(ax, size=size, pad=pad) |
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280 | 280 | cax.tick_params(labelsize=8) |
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281 | 281 | self.pf_axes.append(cax) |
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282 | 282 | else: |
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283 | 283 | if self.height is None: |
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284 | 284 | self.height = 3 |
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285 | 285 | for n in range(self.nplots): |
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286 | 286 | fig = plt.figure(figsize=(self.width, self.height), |
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287 | 287 | edgecolor='k', |
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288 | 288 | facecolor='w') |
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289 | 289 | ax = fig.add_subplot(1, 1, 1, polar=self.polar) |
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290 | 290 | ax.tick_params(labelsize=8) |
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291 | 291 | ax.firsttime = True |
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292 | 292 | ax.index = 0 |
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293 | 293 | ax.press = None |
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294 | 294 | self.figures.append(fig) |
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295 | 295 | self.axes.append(ax) |
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296 | 296 | if self.showprofile: |
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297 | 297 | cax = self.__add_axes(ax, size=size, pad=pad) |
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298 | 298 | cax.tick_params(labelsize=8) |
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299 | 299 | self.pf_axes.append(cax) |
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300 | 300 | |
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301 | 301 | for n in range(self.nrows): |
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302 | 302 | if self.colormaps is not None: |
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303 | 303 | cmap = plt.get_cmap(self.colormaps[n]) |
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304 | 304 | else: |
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305 | 305 | cmap = plt.get_cmap(self.colormap) |
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306 | 306 | cmap.set_bad(self.bgcolor, 1.) |
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307 | 307 | self.cmaps.append(cmap) |
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308 | 308 | |
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309 | 309 | for fig in self.figures: |
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310 | 310 | fig.canvas.mpl_connect('key_press_event', self.OnKeyPress) |
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311 | 311 | fig.canvas.mpl_connect('scroll_event', self.OnBtnScroll) |
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312 | 312 | fig.canvas.mpl_connect('button_press_event', self.onBtnPress) |
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313 | 313 | fig.canvas.mpl_connect('motion_notify_event', self.onMotion) |
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314 | 314 | fig.canvas.mpl_connect('button_release_event', self.onBtnRelease) |
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315 | 315 | |
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316 | 316 | def OnKeyPress(self, event): |
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317 | 317 | ''' |
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318 | 318 | Event for pressing keys (up, down) change colormap |
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319 | 319 | ''' |
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320 | 320 | ax = event.inaxes |
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321 | 321 | if ax in self.axes: |
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322 | 322 | if event.key == 'down': |
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323 | 323 | ax.index += 1 |
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324 | 324 | elif event.key == 'up': |
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325 | 325 | ax.index -= 1 |
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326 | 326 | if ax.index < 0: |
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327 | 327 | ax.index = len(CMAPS) - 1 |
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328 | 328 | elif ax.index == len(CMAPS): |
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329 | 329 | ax.index = 0 |
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330 | 330 | cmap = CMAPS[ax.index] |
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331 | 331 | ax.cbar.set_cmap(cmap) |
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332 | 332 | ax.cbar.draw_all() |
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333 | 333 | ax.plt.set_cmap(cmap) |
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334 | 334 | ax.cbar.patch.figure.canvas.draw() |
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335 | 335 | self.colormap = cmap.name |
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336 | 336 | |
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337 | 337 | def OnBtnScroll(self, event): |
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338 | 338 | ''' |
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339 | 339 | Event for scrolling, scale figure |
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340 | 340 | ''' |
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341 | 341 | cb_ax = event.inaxes |
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342 | 342 | if cb_ax in [ax.cbar.ax for ax in self.axes if ax.cbar]: |
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343 | 343 | ax = [ax for ax in self.axes if cb_ax == ax.cbar.ax][0] |
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344 | 344 | pt = ax.cbar.ax.bbox.get_points()[:, 1] |
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345 | 345 | nrm = ax.cbar.norm |
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346 | 346 | vmin, vmax, p0, p1, pS = ( |
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347 | 347 | nrm.vmin, nrm.vmax, pt[0], pt[1], event.y) |
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348 | 348 | scale = 2 if event.step == 1 else 0.5 |
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349 | 349 | point = vmin + (vmax - vmin) / (p1 - p0) * (pS - p0) |
|
|
350 | 350 | ax.cbar.norm.vmin = point - scale * (point - vmin) |
|
|
351 | 351 | ax.cbar.norm.vmax = point - scale * (point - vmax) |
|
|
352 | 352 | ax.plt.set_norm(ax.cbar.norm) |
|
|
353 | 353 | ax.cbar.draw_all() |
|
|
354 | 354 | ax.cbar.patch.figure.canvas.draw() |
|
|
355 | 355 | |
|
|
356 | 356 | def onBtnPress(self, event): |
|
|
357 | 357 | ''' |
|
|
358 | 358 | Event for mouse button press |
|
|
359 | 359 | ''' |
|
|
360 | 360 | cb_ax = event.inaxes |
|
|
361 | 361 | if cb_ax is None: |
|
|
362 | 362 | return |
|
|
363 | 363 | |
|
|
364 | 364 | if cb_ax in [ax.cbar.ax for ax in self.axes if ax.cbar]: |
|
|
365 | 365 | cb_ax.press = event.x, event.y |
|
|
366 | 366 | else: |
|
|
367 | 367 | cb_ax.press = None |
|
|
368 | 368 | |
|
|
369 | 369 | def onMotion(self, event): |
|
|
370 | 370 | ''' |
|
|
371 | 371 | Event for move inside colorbar |
|
|
372 | 372 | ''' |
|
|
373 | 373 | cb_ax = event.inaxes |
|
|
374 | 374 | if cb_ax is None: |
|
|
375 | 375 | return |
|
|
376 | 376 | if cb_ax not in [ax.cbar.ax for ax in self.axes if ax.cbar]: |
|
|
377 | 377 | return |
|
|
378 | 378 | if cb_ax.press is None: |
|
|
379 | 379 | return |
|
|
380 | 380 | |
|
|
381 | 381 | ax = [ax for ax in self.axes if cb_ax == ax.cbar.ax][0] |
|
|
382 | 382 | xprev, yprev = cb_ax.press |
|
|
383 | 383 | dx = event.x - xprev |
|
|
384 | 384 | dy = event.y - yprev |
|
|
385 | 385 | cb_ax.press = event.x, event.y |
|
|
386 | 386 | scale = ax.cbar.norm.vmax - ax.cbar.norm.vmin |
|
|
387 | 387 | perc = 0.03 |
|
|
388 | 388 | |
|
|
389 | 389 | if event.button == 1: |
|
|
390 | 390 | ax.cbar.norm.vmin -= (perc * scale) * numpy.sign(dy) |
|
|
391 | 391 | ax.cbar.norm.vmax -= (perc * scale) * numpy.sign(dy) |
|
|
392 | 392 | elif event.button == 3: |
|
|
393 | 393 | ax.cbar.norm.vmin -= (perc * scale) * numpy.sign(dy) |
|
|
394 | 394 | ax.cbar.norm.vmax += (perc * scale) * numpy.sign(dy) |
|
|
395 | 395 | |
|
|
396 | 396 | ax.cbar.draw_all() |
|
|
397 | 397 | ax.plt.set_norm(ax.cbar.norm) |
|
|
398 | 398 | ax.cbar.patch.figure.canvas.draw() |
|
|
399 | 399 | |
|
|
400 | 400 | def onBtnRelease(self, event): |
|
|
401 | 401 | ''' |
|
|
402 | 402 | Event for mouse button release |
|
|
403 | 403 | ''' |
|
|
404 | 404 | cb_ax = event.inaxes |
|
|
405 | 405 | if cb_ax is not None: |
|
|
406 | 406 | cb_ax.press = None |
|
|
407 | 407 | |
|
|
408 | 408 | def __add_axes(self, ax, size='30%', pad='8%'): |
|
|
409 | 409 | ''' |
|
|
410 | 410 | Add new axes to the given figure |
|
|
411 | 411 | ''' |
|
|
412 | 412 | divider = make_axes_locatable(ax) |
|
|
413 | 413 | nax = divider.new_horizontal(size=size, pad=pad) |
|
|
414 | 414 | ax.figure.add_axes(nax) |
|
|
415 | 415 | return nax |
|
|
416 | 416 | |
|
|
417 | 417 | def fill_gaps(self, x_buffer, y_buffer, z_buffer): |
|
|
418 | 418 | ''' |
|
|
419 | 419 | Create a masked array for missing data |
|
|
420 | 420 | ''' |
|
|
421 | 421 | if x_buffer.shape[0] < 2: |
|
|
422 | 422 | return x_buffer, y_buffer, z_buffer |
|
|
423 | 423 | |
|
|
424 | 424 | deltas = x_buffer[1:] - x_buffer[0:-1] |
|
|
425 | 425 | x_median = numpy.median(deltas) |
|
|
426 | 426 | |
|
|
427 | 427 | index = numpy.where(deltas > 5 * x_median) |
|
|
428 | 428 | |
|
|
429 | 429 | if len(index[0]) != 0: |
|
|
430 | 430 | z_buffer[::, index[0], ::] = self.__missing |
|
|
431 | 431 | z_buffer = numpy.ma.masked_inside(z_buffer, |
|
|
432 | 432 | 0.99 * self.__missing, |
|
|
433 | 433 | 1.01 * self.__missing) |
|
|
434 | 434 | |
|
|
435 | 435 | return x_buffer, y_buffer, z_buffer |
|
|
436 | 436 | |
|
|
437 | 437 | def decimate(self): |
|
|
438 | 438 | |
|
|
439 | 439 | # dx = int(len(self.x)/self.__MAXNUMX) + 1 |
|
|
440 | 440 | dy = int(len(self.y) / self.decimation) + 1 |
|
|
441 | 441 | |
|
|
442 | 442 | # x = self.x[::dx] |
|
|
443 | 443 | x = self.x |
|
|
444 | 444 | y = self.y[::dy] |
|
|
445 | 445 | z = self.z[::, ::, ::dy] |
|
|
446 | 446 | |
|
|
447 | 447 | return x, y, z |
|
|
448 | 448 | |
|
|
449 | 449 | def format(self): |
|
|
450 | 450 | ''' |
|
|
451 | 451 | Set min and max values, labels, ticks and titles |
|
|
452 | 452 | ''' |
|
|
453 | 453 | |
|
|
454 | 454 | if self.xmin is None: |
|
|
455 | 455 | xmin = self.data.min_time |
|
|
456 | 456 | else: |
|
|
457 | 457 | if self.xaxis is 'time': |
|
|
458 | 458 | dt = self.getDateTime(self.data.min_time) |
|
|
459 | 459 | xmin = (dt.replace(hour=int(self.xmin), minute=0, second=0) - |
|
|
460 | 460 | datetime.datetime(1970, 1, 1)).total_seconds() |
|
|
461 | 461 | if self.data.localtime: |
|
|
462 | 462 | xmin += time.timezone |
|
|
463 | 463 | else: |
|
|
464 | 464 | xmin = self.xmin |
|
|
465 | 465 | |
|
|
466 | 466 | if self.xmax is None: |
|
|
467 | 467 | xmax = xmin + self.xrange * 60 * 60 |
|
|
468 | 468 | else: |
|
|
469 | 469 | if self.xaxis is 'time': |
|
|
470 | 470 | dt = self.getDateTime(self.data.max_time) |
|
|
471 | 471 | xmax = (dt.replace(hour=int(self.xmax), minute=59, second=59) - |
|
|
472 | 472 | datetime.datetime(1970, 1, 1) + datetime.timedelta(seconds=1)).total_seconds() |
|
|
473 | 473 | if self.data.localtime: |
|
|
474 | 474 | xmax += time.timezone |
|
|
475 | 475 | else: |
|
|
476 | 476 | xmax = self.xmax |
|
|
477 | 477 | |
|
|
478 | 478 | ymin = self.ymin if self.ymin else numpy.nanmin(self.y) |
|
|
479 | 479 | ymax = self.ymax if self.ymax else numpy.nanmax(self.y) |
|
|
480 | 480 | #Y = numpy.array([1, 2, 5, 10, 20, 50, 100, 200, 500, 1000, 2000, 5000, 10000, 20000, 50000]) |
|
|
481 | 481 | |
|
|
482 | 482 | #i = 1 if numpy.where( |
|
|
483 | 483 | # abs(ymax-ymin) <= Y)[0][0] < 0 else numpy.where(abs(ymax-ymin) <= Y)[0][0] |
|
|
484 | 484 | #ystep = Y[i] / 10. |
|
|
485 | 485 | dig = int(numpy.log10(ymax)) |
|
|
486 | 486 | if dig == 0: |
|
|
487 | 487 | digD = len(str(ymax)) - 2 |
|
|
488 | 488 | ydec = ymax*(10**digD) |
|
|
489 | 489 | |
|
|
490 | 490 | dig = int(numpy.log10(ydec)) |
|
|
491 | 491 | ystep = ((ydec + (10**(dig)))//10**(dig))*(10**(dig)) |
|
|
492 | 492 | ystep = ystep/5 |
|
|
493 | 493 | ystep = ystep/(10**digD) |
|
|
494 | 494 | |
|
|
495 | 495 | else: |
|
|
496 | 496 | ystep = ((ymax + (10**(dig)))//10**(dig))*(10**(dig)) |
|
|
497 | 497 | ystep = ystep/5 |
|
|
498 | 498 | |
|
|
499 | 499 | if self.xaxis is not 'time': |
|
|
500 | 500 | |
|
|
501 | 501 | dig = int(numpy.log10(xmax)) |
|
|
502 | 502 | |
|
|
503 | 503 | if dig <= 0: |
|
|
504 | 504 | digD = len(str(xmax)) - 2 |
|
|
505 | 505 | xdec = xmax*(10**digD) |
|
|
506 | 506 | |
|
|
507 | 507 | dig = int(numpy.log10(xdec)) |
|
|
508 | 508 | xstep = ((xdec + (10**(dig)))//10**(dig))*(10**(dig)) |
|
|
509 | 509 | xstep = xstep*0.5 |
|
|
510 | 510 | xstep = xstep/(10**digD) |
|
|
511 | 511 | |
|
|
512 | 512 | else: |
|
|
513 | 513 | xstep = ((xmax + (10**(dig)))//10**(dig))*(10**(dig)) |
|
|
514 | 514 | xstep = xstep/5 |
|
|
515 | 515 | |
|
|
516 | 516 | for n, ax in enumerate(self.axes): |
|
|
517 | 517 | if ax.firsttime: |
|
|
518 | 518 | ax.set_facecolor(self.bgcolor) |
|
|
519 | 519 | ax.yaxis.set_major_locator(MultipleLocator(ystep)) |
|
|
520 | 520 | if self.xscale: |
|
|
521 | 521 | ax.xaxis.set_major_formatter(FuncFormatter( |
|
|
522 | 522 | lambda x, pos: '{0:g}'.format(x*self.xscale))) |
|
|
523 | 523 | if self.xscale: |
|
|
524 | 524 | ax.yaxis.set_major_formatter(FuncFormatter( |
|
|
525 | 525 | lambda x, pos: '{0:g}'.format(x*self.yscale))) |
|
|
526 | 526 | if self.xaxis is 'time': |
|
|
527 | 527 | ax.xaxis.set_major_formatter(FuncFormatter(self.__fmtTime)) |
|
|
528 | 528 | ax.xaxis.set_major_locator(LinearLocator(9)) |
|
|
529 | 529 | else: |
|
|
530 | 530 | ax.xaxis.set_major_locator(MultipleLocator(xstep)) |
|
|
531 | 531 | if self.xlabel is not None: |
|
|
532 | 532 | ax.set_xlabel(self.xlabel) |
|
|
533 | 533 | ax.set_ylabel(self.ylabel) |
|
|
534 | 534 | ax.firsttime = False |
|
|
535 | 535 | if self.showprofile: |
|
|
536 | 536 | self.pf_axes[n].set_ylim(ymin, ymax) |
|
|
537 | 537 | self.pf_axes[n].set_xlim(self.zmin, self.zmax) |
|
|
538 | 538 | self.pf_axes[n].set_xlabel('dB') |
|
|
539 | 539 | self.pf_axes[n].grid(b=True, axis='x') |
|
|
540 | 540 | [tick.set_visible(False) |
|
|
541 | 541 | for tick in self.pf_axes[n].get_yticklabels()] |
|
|
542 | 542 | if self.colorbar: |
|
|
543 | 543 | ax.cbar = plt.colorbar( |
|
|
544 | 544 | ax.plt, ax=ax, fraction=0.05, pad=0.02, aspect=10) |
|
|
545 | 545 | ax.cbar.ax.tick_params(labelsize=8) |
|
|
546 | 546 | ax.cbar.ax.press = None |
|
|
547 | 547 | if self.cb_label: |
|
|
548 | 548 | ax.cbar.set_label(self.cb_label, size=8) |
|
|
549 | 549 | elif self.cb_labels: |
|
|
550 | 550 | ax.cbar.set_label(self.cb_labels[n], size=8) |
|
|
551 | 551 | else: |
|
|
552 | 552 | ax.cbar = None |
|
|
553 | 553 | if self.grid: |
|
|
554 | 554 | ax.grid(True) |
|
|
555 | 555 | |
|
|
556 | 556 | if not self.polar: |
|
|
557 | 557 | ax.set_xlim(xmin, xmax) |
|
|
558 | 558 | ax.set_ylim(ymin, ymax) |
|
|
559 | 559 | ax.set_title('{} {} {}'.format( |
|
|
560 | 560 | self.titles[n], |
|
|
561 | 561 | self.getDateTime(self.data.max_time).strftime( |
|
|
562 | 562 | '%Y-%m-%d %H:%M:%S'), |
|
|
563 | 563 | self.time_label), |
|
|
564 | 564 | size=8) |
|
|
565 | 565 | else: |
|
|
566 | 566 | ax.set_title('{}'.format(self.titles[n]), size=8) |
|
|
567 | 567 | ax.set_ylim(0, 90) |
|
|
568 | 568 | ax.set_yticks(numpy.arange(0, 90, 20)) |
|
|
569 | 569 | ax.yaxis.labelpad = 40 |
|
|
570 | 570 | |
|
|
571 | 571 | def clear_figures(self): |
|
|
572 | 572 | ''' |
|
|
573 | 573 | Reset axes for redraw plots |
|
|
574 | 574 | ''' |
|
|
575 | 575 | |
|
|
576 | 576 | for ax in self.axes: |
|
|
577 | 577 | ax.clear() |
|
|
578 | 578 | ax.firsttime = True |
|
|
579 | 579 | if ax.cbar: |
|
|
580 | 580 | ax.cbar.remove() |
|
|
581 | 581 | |
|
|
582 | 582 | def __plot(self): |
|
|
583 | 583 | ''' |
|
|
584 | 584 | Main function to plot, format and save figures |
|
|
585 | 585 | ''' |
|
|
586 | 586 | |
|
|
587 | 587 | try: |
|
|
588 | 588 | self.plot() |
|
|
589 | 589 | self.format() |
|
|
590 | 590 | except Exception as e: |
|
|
591 | 591 | log.warning('{} Plot could not be updated... check data'.format( |
|
|
592 | 592 | self.CODE), self.name) |
|
|
593 | 593 | log.error(str(e), '') |
|
|
594 | 594 | return |
|
|
595 | 595 | |
|
|
596 | 596 | for n, fig in enumerate(self.figures): |
|
|
597 | 597 | if self.nrows == 0 or self.nplots == 0: |
|
|
598 | 598 | log.warning('No data', self.name) |
|
|
599 | 599 | fig.text(0.5, 0.5, 'No Data', fontsize='large', ha='center') |
|
|
600 | 600 | fig.canvas.manager.set_window_title(self.CODE) |
|
|
601 | 601 | continue |
|
|
602 | 602 | |
|
|
603 | 603 | fig.tight_layout() |
|
|
604 | 604 | fig.canvas.manager.set_window_title('{} - {}'.format(self.title, |
|
|
605 | 605 | self.getDateTime(self.data.max_time).strftime('%Y/%m/%d'))) |
|
|
606 | 606 | fig.canvas.draw() |
|
|
607 | 607 | if self.show: |
|
|
608 | 608 | fig.show() |
|
|
609 | 609 | figpause(0.1) |
|
|
610 | 610 | |
|
|
611 | 611 | if self.save: |
|
|
612 | 612 | self.save_figure(n) |
|
|
613 | 613 | |
|
|
614 | 614 | if self.plot_server: |
|
|
615 | 615 | self.send_to_server() |
|
|
616 | 616 | # t = Thread(target=self.send_to_server) |
|
|
617 | 617 | # t.start() |
|
|
618 | 618 | |
|
|
619 | 619 | def save_figure(self, n): |
|
|
620 | 620 | ''' |
|
|
621 | 621 | ''' |
|
|
622 | 622 | |
|
|
623 | 623 | if self.save_counter < self.save_period: |
|
|
624 | 624 | self.save_counter += 1 |
|
|
625 | 625 | return |
|
|
626 | 626 | |
|
|
627 | 627 | self.save_counter = 1 |
|
|
628 | 628 | |
|
|
629 | 629 | fig = self.figures[n] |
|
|
630 | 630 | |
|
|
631 | 631 | if self.save_labels: |
|
|
632 | 632 | labels = self.save_labels |
|
|
633 | 633 | else: |
|
|
634 | 634 | labels = list(range(self.nrows)) |
|
|
635 | 635 | |
|
|
636 | 636 | if self.oneFigure: |
|
|
637 | 637 | label = '' |
|
|
638 | 638 | else: |
|
|
639 | 639 | label = '-{}'.format(labels[n]) |
|
|
640 | 640 | figname = os.path.join( |
|
|
641 | 641 | self.save, |
|
|
642 | 642 | self.CODE, |
|
|
643 | 643 | '{}{}_{}.png'.format( |
|
|
644 | 644 | self.CODE, |
|
|
645 | 645 | label, |
|
|
646 | 646 | self.getDateTime(self.data.max_time).strftime( |
|
|
647 | 647 | '%Y%m%d_%H%M%S' |
|
|
648 | 648 | ), |
|
|
649 | 649 | ) |
|
|
650 | 650 | ) |
|
|
651 | 651 | log.log('Saving figure: {}'.format(figname), self.name) |
|
|
652 | 652 | if not os.path.isdir(os.path.dirname(figname)): |
|
|
653 | 653 | os.makedirs(os.path.dirname(figname)) |
|
|
654 | 654 | fig.savefig(figname) |
|
|
655 | 655 | |
|
|
656 | 656 | if self.realtime: |
|
|
657 | 657 | figname = os.path.join( |
|
|
658 | 658 | self.save, |
|
|
659 | 659 | '{}{}_{}.png'.format( |
|
|
660 | 660 | self.CODE, |
|
|
661 | 661 | label, |
|
|
662 | 662 | self.getDateTime(self.data.min_time).strftime( |
|
|
663 | 663 | '%Y%m%d' |
|
|
664 | 664 | ), |
|
|
665 | 665 | ) |
|
|
666 | 666 | ) |
|
|
667 | 667 | fig.savefig(figname) |
|
|
668 | 668 | |
|
|
669 | 669 | def send_to_server(self): |
|
|
670 | 670 | ''' |
|
|
671 | 671 | ''' |
|
|
672 | 672 | |
|
|
673 | 673 | if self.sender_counter < self.sender_period: |
|
|
674 | 674 | self.sender_counter += 1 |
|
|
675 | 675 | return |
|
|
676 | 676 | |
|
|
677 | 677 | self.sender_counter = 1 |
|
|
678 | 678 | self.data.meta['titles'] = self.titles |
|
|
679 | 679 | retries = 2 |
|
|
680 | 680 | while True: |
|
|
681 | 681 | self.socket.send_string(self.data.jsonify(self.plot_name, self.plot_type)) |
|
|
682 | 682 | socks = dict(self.poll.poll(5000)) |
|
|
683 | 683 | if socks.get(self.socket) == zmq.POLLIN: |
|
|
684 | 684 | reply = self.socket.recv_string() |
|
|
685 | 685 | if reply == 'ok': |
|
|
686 | 686 | log.log("Response from server ok", self.name) |
|
|
687 | 687 | break |
|
|
688 | 688 | else: |
|
|
689 | 689 | log.warning( |
|
|
690 | 690 | "Malformed reply from server: {}".format(reply), self.name) |
|
|
691 | 691 | |
|
|
692 | 692 | else: |
|
|
693 | 693 | log.warning( |
|
|
694 | 694 | "No response from server, retrying...", self.name) |
|
|
695 | 695 | self.socket.setsockopt(zmq.LINGER, 0) |
|
|
696 | 696 | self.socket.close() |
|
|
697 | 697 | self.poll.unregister(self.socket) |
|
|
698 | 698 | retries -= 1 |
|
|
699 | 699 | if retries == 0: |
|
|
700 | 700 | log.error( |
|
|
701 | 701 | "Server seems to be offline, abandoning", self.name) |
|
|
702 | 702 | self.socket = self.context.socket(zmq.REQ) |
|
|
703 | 703 | self.socket.connect(self.plot_server) |
|
|
704 | 704 | self.poll.register(self.socket, zmq.POLLIN) |
|
|
705 | 705 | time.sleep(1) |
|
|
706 | 706 | break |
|
|
707 | 707 | self.socket = self.context.socket(zmq.REQ) |
|
|
708 | 708 | self.socket.connect(self.plot_server) |
|
|
709 | 709 | self.poll.register(self.socket, zmq.POLLIN) |
|
|
710 | 710 | time.sleep(0.5) |
|
|
711 | 711 | |
|
|
712 | 712 | def setup(self): |
|
|
713 | 713 | ''' |
|
|
714 | 714 | This method should be implemented in the child class, the following |
|
|
715 | 715 | attributes should be set: |
|
|
716 | 716 | |
|
|
717 | 717 | self.nrows: number of rows |
|
|
718 | 718 | self.ncols: number of cols |
|
|
719 | 719 | self.nplots: number of plots (channels or pairs) |
|
|
720 | 720 | self.ylabel: label for Y axes |
|
|
721 | 721 | self.titles: list of axes title |
|
|
722 | 722 | |
|
|
723 | 723 | ''' |
|
|
724 | 724 | raise NotImplementedError |
|
|
725 | 725 | |
|
|
726 | 726 | def plot(self): |
|
|
727 | 727 | ''' |
|
|
728 | 728 | Must be defined in the child class |
|
|
729 | 729 | ''' |
|
|
730 | 730 | raise NotImplementedError |
|
|
731 | 731 | |
|
|
732 | 732 | def run(self, dataOut, **kwargs): |
|
|
733 | 733 | ''' |
|
|
734 | 734 | Main plotting routine |
|
|
735 | 735 | ''' |
|
|
736 | 736 | |
|
|
737 | 737 | if self.isConfig is False: |
|
|
738 | 738 | self.__setup(**kwargs) |
|
|
739 | 739 | if dataOut.type == 'Parameters': |
|
|
740 | 740 | t = dataOut.utctimeInit |
|
|
741 | 741 | else: |
|
|
742 | 742 | t = dataOut.utctime |
|
|
743 | 743 | |
|
|
744 | 744 | if dataOut.useLocalTime: |
|
|
745 | 745 | self.getDateTime = datetime.datetime.fromtimestamp |
|
|
746 | 746 | if not self.localtime: |
|
|
747 | 747 | t += time.timezone |
|
|
748 | 748 | else: |
|
|
749 | 749 | self.getDateTime = datetime.datetime.utcfromtimestamp |
|
|
750 | 750 | if self.localtime: |
|
|
751 | 751 | t -= time.timezone |
|
|
752 | 752 | |
|
|
753 | 753 | if 'buffer' in self.plot_type: |
|
|
754 | 754 | if self.xmin is None: |
|
|
755 | 755 | self.tmin = t |
|
|
756 | 756 | else: |
|
|
757 | 757 | self.tmin = ( |
|
|
758 | 758 | self.getDateTime(t).replace( |
|
|
759 | 759 | hour=self.xmin, |
|
|
760 | 760 | minute=0, |
|
|
761 | 761 | second=0) - self.getDateTime(0)).total_seconds() |
|
|
762 | 762 | |
|
|
763 | 763 | self.data.setup() |
|
|
764 | 764 | self.isConfig = True |
|
|
765 | 765 | if self.plot_server: |
|
|
766 | 766 | self.context = zmq.Context() |
|
|
767 | 767 | self.socket = self.context.socket(zmq.REQ) |
|
|
768 | 768 | self.socket.connect(self.plot_server) |
|
|
769 | 769 | self.poll = zmq.Poller() |
|
|
770 | 770 | self.poll.register(self.socket, zmq.POLLIN) |
|
|
771 | 771 | |
|
|
772 | 772 | if dataOut.type == 'Parameters': |
|
|
773 | 773 | tm = dataOut.utctimeInit |
|
|
774 | 774 | else: |
|
|
775 | 775 | tm = dataOut.utctime |
|
|
776 | 776 | |
|
|
777 | 777 | if not dataOut.useLocalTime and self.localtime: |
|
|
778 | 778 | tm -= time.timezone |
|
|
779 | 779 | if dataOut.useLocalTime and not self.localtime: |
|
|
780 | 780 | tm += time.timezone |
|
|
781 | 781 | |
|
|
782 | 782 | if self.xaxis is 'time' and self.data and (tm - self.tmin) >= self.xrange*60*60: |
|
|
783 | 783 | self.save_counter = self.save_period |
|
|
784 | 784 | self.__plot() |
|
|
785 | 785 | self.xmin += self.xrange |
|
|
786 | 786 | if self.xmin >= 24: |
|
|
787 | 787 | self.xmin -= 24 |
|
|
788 | 788 | self.tmin += self.xrange*60*60 |
|
|
789 | 789 | self.data.setup() |
|
|
790 | 790 | self.clear_figures() |
|
|
791 | 791 | |
|
|
792 | 792 | self.data.update(dataOut, tm) |
|
|
793 | 793 | |
|
|
794 | 794 | if self.isPlotConfig is False: |
|
|
795 | 795 | self.__setup_plot() |
|
|
796 | 796 | self.isPlotConfig = True |
|
|
797 | 797 | |
|
|
798 | 798 | if self.realtime: |
|
|
799 | 799 | self.__plot() |
|
|
800 | 800 | else: |
|
|
801 | 801 | self.__throttle_plot(self.__plot)#, coerce=coerce) |
|
|
802 | 802 | |
|
|
803 | 803 | def close(self): |
|
|
804 | 804 | |
|
|
805 | 805 | if self.data: |
|
|
806 | 806 | self.save_counter = self.save_period |
|
|
807 | 807 | self.__plot() |
|
|
808 | 808 | if self.data and self.pause: |
|
|
809 | 809 | figpause(10) |
|
|
810 | 810 | |
| This diff has been collapsed as it changes many lines, (1038 lines changed) Show them Hide them | |||
| @@ -1,1831 +1,1565 | |||
|
|
1 | ''' | |
|
|
1 | """ | |
|
|
2 | 2 | Created on Jul 2, 2014 |
|
|
3 | 3 | |
|
|
4 | 4 | @author: roj-idl71 |
|
|
5 | ''' | |
|
|
5 | """ | |
|
|
6 | 6 | import os |
|
|
7 | 7 | import sys |
|
|
8 | 8 | import glob |
|
|
9 | 9 | import time |
|
|
10 | 10 | import numpy |
|
|
11 | 11 | import fnmatch |
|
|
12 | 12 | import inspect |
|
|
13 | 13 | import time |
|
|
14 | 14 | import datetime |
|
|
15 | import traceback | |
|
|
16 | 15 | import zmq |
|
|
17 | 16 | |
|
|
18 | 17 | from schainpy.model.data.jroheaderIO import PROCFLAG, BasicHeader, SystemHeader, RadarControllerHeader, ProcessingHeader |
|
|
19 | 18 | from schainpy.model.data.jroheaderIO import get_dtype_index, get_numpy_dtype, get_procflag_dtype, get_dtype_width |
|
|
20 | 19 | from schainpy.utils import log |
|
|
21 | 20 | import schainpy.admin |
|
|
22 | 21 | |
|
|
23 | 22 | LOCALTIME = True |
|
|
23 | DT_DIRECTIVES = { | |
|
|
24 | '%Y': 4, | |
|
|
25 | '%y': 2, | |
|
|
26 | '%m': 2, | |
|
|
27 | '%d': 2, | |
|
|
28 | '%j': 3, | |
|
|
29 | '%H': 2, | |
|
|
30 | '%M': 2, | |
|
|
31 | '%S': 2, | |
|
|
32 | '%f': 6 | |
|
|
33 | } | |
|
|
24 | 34 | |
|
|
25 | 35 | |
|
|
26 | 36 | def isNumber(cad): |
|
|
27 | 37 | """ |
|
|
28 | 38 | Chequea si el conjunto de caracteres que componen un string puede ser convertidos a un numero. |
|
|
29 | 39 | |
|
|
30 | 40 | Excepciones: |
|
|
31 | 41 | Si un determinado string no puede ser convertido a numero |
|
|
32 | 42 | Input: |
|
|
33 | 43 | str, string al cual se le analiza para determinar si convertible a un numero o no |
|
|
34 | 44 | |
|
|
35 | 45 | Return: |
|
|
36 | 46 | True : si el string es uno numerico |
|
|
37 | 47 | False : no es un string numerico |
|
|
38 | 48 | """ |
|
|
39 | 49 | try: |
|
|
40 | 50 | float(cad) |
|
|
41 | 51 | return True |
|
|
42 | 52 | except: |
|
|
43 | 53 | return False |
|
|
44 | 54 | |
|
|
45 | 55 | |
|
|
46 | 56 | def isFileInEpoch(filename, startUTSeconds, endUTSeconds): |
|
|
47 | 57 | """ |
|
|
48 | 58 | Esta funcion determina si un archivo de datos se encuentra o no dentro del rango de fecha especificado. |
|
|
49 | 59 | |
|
|
50 | 60 | Inputs: |
|
|
51 | 61 | filename : nombre completo del archivo de datos en formato Jicamarca (.r) |
|
|
52 | 62 | |
|
|
53 | 63 | startUTSeconds : fecha inicial del rango seleccionado. La fecha esta dada en |
|
|
54 | 64 | segundos contados desde 01/01/1970. |
|
|
55 | 65 | endUTSeconds : fecha final del rango seleccionado. La fecha esta dada en |
|
|
56 | 66 | segundos contados desde 01/01/1970. |
|
|
57 | 67 | |
|
|
58 | 68 | Return: |
|
|
59 | 69 | Boolean : Retorna True si el archivo de datos contiene datos en el rango de |
|
|
60 | 70 | fecha especificado, de lo contrario retorna False. |
|
|
61 | 71 | |
|
|
62 | 72 | Excepciones: |
|
|
63 | 73 | Si el archivo no existe o no puede ser abierto |
|
|
64 | 74 | Si la cabecera no puede ser leida. |
|
|
65 | 75 | |
|
|
66 | 76 | """ |
|
|
67 | 77 | basicHeaderObj = BasicHeader(LOCALTIME) |
|
|
68 | 78 | |
|
|
69 | 79 | try: |
|
|
70 | 80 | fp = open(filename, 'rb') |
|
|
71 | 81 | except IOError: |
|
|
72 | 82 | print("The file %s can't be opened" % (filename)) |
|
|
73 | 83 | return 0 |
|
|
74 | 84 | |
|
|
75 | 85 | sts = basicHeaderObj.read(fp) |
|
|
76 | 86 | fp.close() |
|
|
77 | 87 | |
|
|
78 | 88 | if not(sts): |
|
|
79 | 89 | print("Skipping the file %s because it has not a valid header" % (filename)) |
|
|
80 | 90 | return 0 |
|
|
81 | 91 | |
|
|
82 | 92 | if not ((startUTSeconds <= basicHeaderObj.utc) and (endUTSeconds > basicHeaderObj.utc)): |
|
|
83 | 93 | return 0 |
|
|
84 | 94 | |
|
|
85 | 95 | return 1 |
|
|
86 | 96 | |
|
|
87 | 97 | |
|
|
88 | 98 | def isTimeInRange(thisTime, startTime, endTime): |
|
|
89 | 99 | if endTime >= startTime: |
|
|
90 | 100 | if (thisTime < startTime) or (thisTime > endTime): |
|
|
91 | 101 | return 0 |
|
|
92 | 102 | return 1 |
|
|
93 | 103 | else: |
|
|
94 | 104 | if (thisTime < startTime) and (thisTime > endTime): |
|
|
95 | 105 | return 0 |
|
|
96 | 106 | return 1 |
|
|
97 | 107 | |
|
|
98 | 108 | |
|
|
99 | 109 | def isFileInTimeRange(filename, startDate, endDate, startTime, endTime): |
|
|
100 | 110 | """ |
|
|
101 | 111 | Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado. |
|
|
102 | 112 | |
|
|
103 | 113 | Inputs: |
|
|
104 | 114 | filename : nombre completo del archivo de datos en formato Jicamarca (.r) |
|
|
105 | 115 | |
|
|
106 | 116 | startDate : fecha inicial del rango seleccionado en formato datetime.date |
|
|
107 | 117 | |
|
|
108 | 118 | endDate : fecha final del rango seleccionado en formato datetime.date |
|
|
109 | 119 | |
|
|
110 | 120 | startTime : tiempo inicial del rango seleccionado en formato datetime.time |
|
|
111 | 121 | |
|
|
112 | 122 | endTime : tiempo final del rango seleccionado en formato datetime.time |
|
|
113 | 123 | |
|
|
114 | 124 | Return: |
|
|
115 | 125 | Boolean : Retorna True si el archivo de datos contiene datos en el rango de |
|
|
116 | 126 | fecha especificado, de lo contrario retorna False. |
|
|
117 | 127 | |
|
|
118 | 128 | Excepciones: |
|
|
119 | 129 | Si el archivo no existe o no puede ser abierto |
|
|
120 | 130 | Si la cabecera no puede ser leida. |
|
|
121 | 131 | |
|
|
122 | 132 | """ |
|
|
123 | 133 | |
|
|
124 | 134 | try: |
|
|
125 | 135 | fp = open(filename, 'rb') |
|
|
126 | 136 | except IOError: |
|
|
127 | 137 | print("The file %s can't be opened" % (filename)) |
|
|
128 | 138 | return None |
|
|
129 | 139 | |
|
|
130 | 140 | firstBasicHeaderObj = BasicHeader(LOCALTIME) |
|
|
131 | 141 | systemHeaderObj = SystemHeader() |
|
|
132 | 142 | radarControllerHeaderObj = RadarControllerHeader() |
|
|
133 | 143 | processingHeaderObj = ProcessingHeader() |
|
|
134 | 144 | |
|
|
135 | 145 | lastBasicHeaderObj = BasicHeader(LOCALTIME) |
|
|
136 | 146 | |
|
|
137 | 147 | sts = firstBasicHeaderObj.read(fp) |
|
|
138 | 148 | |
|
|
139 | 149 | if not(sts): |
|
|
140 | 150 | print("[Reading] Skipping the file %s because it has not a valid header" % (filename)) |
|
|
141 | 151 | return None |
|
|
142 | 152 | |
|
|
143 | 153 | if not systemHeaderObj.read(fp): |
|
|
144 | 154 | return None |
|
|
145 | 155 | |
|
|
146 | 156 | if not radarControllerHeaderObj.read(fp): |
|
|
147 | 157 | return None |
|
|
148 | 158 | |
|
|
149 | 159 | if not processingHeaderObj.read(fp): |
|
|
150 | 160 | return None |
|
|
151 | 161 | |
|
|
152 | 162 | filesize = os.path.getsize(filename) |
|
|
153 | 163 | |
|
|
154 | 164 | offset = processingHeaderObj.blockSize + 24 # header size |
|
|
155 | 165 | |
|
|
156 | 166 | if filesize <= offset: |
|
|
157 | 167 | print("[Reading] %s: This file has not enough data" % filename) |
|
|
158 | 168 | return None |
|
|
159 | 169 | |
|
|
160 | 170 | fp.seek(-offset, 2) |
|
|
161 | 171 | |
|
|
162 | 172 | sts = lastBasicHeaderObj.read(fp) |
|
|
163 | 173 | |
|
|
164 | 174 | fp.close() |
|
|
165 | 175 | |
|
|
166 | 176 | thisDatetime = lastBasicHeaderObj.datatime |
|
|
167 | 177 | thisTime_last_block = thisDatetime.time() |
|
|
168 | 178 | |
|
|
169 | 179 | thisDatetime = firstBasicHeaderObj.datatime |
|
|
170 | 180 | thisDate = thisDatetime.date() |
|
|
171 | 181 | thisTime_first_block = thisDatetime.time() |
|
|
172 | 182 | |
|
|
173 | 183 | # General case |
|
|
174 | 184 | # o>>>>>>>>>>>>>><<<<<<<<<<<<<<o |
|
|
175 | 185 | #-----------o----------------------------o----------- |
|
|
176 | 186 | # startTime endTime |
|
|
177 | 187 | |
|
|
178 | 188 | if endTime >= startTime: |
|
|
179 | 189 | if (thisTime_last_block < startTime) or (thisTime_first_block > endTime): |
|
|
180 | 190 | return None |
|
|
181 | 191 | |
|
|
182 | 192 | return thisDatetime |
|
|
183 | 193 | |
|
|
184 | 194 | # If endTime < startTime then endTime belongs to the next day |
|
|
185 | 195 | |
|
|
186 | 196 | #<<<<<<<<<<<o o>>>>>>>>>>> |
|
|
187 | 197 | #-----------o----------------------------o----------- |
|
|
188 | 198 | # endTime startTime |
|
|
189 | 199 | |
|
|
190 | 200 | if (thisDate == startDate) and (thisTime_last_block < startTime): |
|
|
191 | 201 | return None |
|
|
192 | 202 | |
|
|
193 | 203 | if (thisDate == endDate) and (thisTime_first_block > endTime): |
|
|
194 | 204 | return None |
|
|
195 | 205 | |
|
|
196 | 206 | if (thisTime_last_block < startTime) and (thisTime_first_block > endTime): |
|
|
197 | 207 | return None |
|
|
198 | 208 | |
|
|
199 | 209 | return thisDatetime |
|
|
200 | 210 | |
|
|
201 | 211 | |
|
|
202 | 212 | def isFolderInDateRange(folder, startDate=None, endDate=None): |
|
|
203 | 213 | """ |
|
|
204 | 214 | Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado. |
|
|
205 | 215 | |
|
|
206 | 216 | Inputs: |
|
|
207 | 217 | folder : nombre completo del directorio. |
|
|
208 | 218 | Su formato deberia ser "/path_root/?YYYYDDD" |
|
|
209 | 219 | |
|
|
210 | 220 | siendo: |
|
|
211 | 221 | YYYY : Anio (ejemplo 2015) |
|
|
212 | 222 | DDD : Dia del anio (ejemplo 305) |
|
|
213 | 223 | |
|
|
214 | 224 | startDate : fecha inicial del rango seleccionado en formato datetime.date |
|
|
215 | 225 | |
|
|
216 | 226 | endDate : fecha final del rango seleccionado en formato datetime.date |
|
|
217 | 227 | |
|
|
218 | 228 | Return: |
|
|
219 | 229 | Boolean : Retorna True si el archivo de datos contiene datos en el rango de |
|
|
220 | 230 | fecha especificado, de lo contrario retorna False. |
|
|
221 | 231 | Excepciones: |
|
|
222 | 232 | Si el directorio no tiene el formato adecuado |
|
|
223 | 233 | """ |
|
|
224 | 234 | |
|
|
225 | 235 | basename = os.path.basename(folder) |
|
|
226 | 236 | |
|
|
227 | 237 | if not isRadarFolder(basename): |
|
|
228 | 238 | print("The folder %s has not the rigth format" % folder) |
|
|
229 | 239 | return 0 |
|
|
230 | 240 | |
|
|
231 | 241 | if startDate and endDate: |
|
|
232 | 242 | thisDate = getDateFromRadarFolder(basename) |
|
|
233 | 243 | |
|
|
234 | 244 | if thisDate < startDate: |
|
|
235 | 245 | return 0 |
|
|
236 | 246 | |
|
|
237 | 247 | if thisDate > endDate: |
|
|
238 | 248 | return 0 |
|
|
239 | 249 | |
|
|
240 | 250 | return 1 |
|
|
241 | 251 | |
|
|
242 | 252 | |
|
|
243 | 253 | def isFileInDateRange(filename, startDate=None, endDate=None): |
|
|
244 | 254 | """ |
|
|
245 | 255 | Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado. |
|
|
246 | 256 | |
|
|
247 | 257 | Inputs: |
|
|
248 | 258 | filename : nombre completo del archivo de datos en formato Jicamarca (.r) |
|
|
249 | 259 | |
|
|
250 | 260 | Su formato deberia ser "?YYYYDDDsss" |
|
|
251 | 261 | |
|
|
252 | 262 | siendo: |
|
|
253 | 263 | YYYY : Anio (ejemplo 2015) |
|
|
254 | 264 | DDD : Dia del anio (ejemplo 305) |
|
|
255 | 265 | sss : set |
|
|
256 | 266 | |
|
|
257 | 267 | startDate : fecha inicial del rango seleccionado en formato datetime.date |
|
|
258 | 268 | |
|
|
259 | 269 | endDate : fecha final del rango seleccionado en formato datetime.date |
|
|
260 | 270 | |
|
|
261 | 271 | Return: |
|
|
262 | 272 | Boolean : Retorna True si el archivo de datos contiene datos en el rango de |
|
|
263 | 273 | fecha especificado, de lo contrario retorna False. |
|
|
264 | 274 | Excepciones: |
|
|
265 | 275 | Si el archivo no tiene el formato adecuado |
|
|
266 | 276 | """ |
|
|
267 | 277 | |
|
|
268 | 278 | basename = os.path.basename(filename) |
|
|
269 | 279 | |
|
|
270 | 280 | if not isRadarFile(basename): |
|
|
271 | 281 | print("The filename %s has not the rigth format" % filename) |
|
|
272 | 282 | return 0 |
|
|
273 | 283 | |
|
|
274 | 284 | if startDate and endDate: |
|
|
275 | 285 | thisDate = getDateFromRadarFile(basename) |
|
|
276 | 286 | |
|
|
277 | 287 | if thisDate < startDate: |
|
|
278 | 288 | return 0 |
|
|
279 | 289 | |
|
|
280 | 290 | if thisDate > endDate: |
|
|
281 | 291 | return 0 |
|
|
282 | 292 | |
|
|
283 | 293 | return 1 |
|
|
284 | 294 | |
|
|
285 | 295 | |
|
|
286 | 296 | def getFileFromSet(path, ext, set): |
|
|
287 | 297 | validFilelist = [] |
|
|
288 | 298 | fileList = os.listdir(path) |
|
|
289 | 299 | |
|
|
290 | 300 | # 0 1234 567 89A BCDE |
|
|
291 | 301 | # H YYYY DDD SSS .ext |
|
|
292 | 302 | |
|
|
293 | 303 | for thisFile in fileList: |
|
|
294 | 304 | try: |
|
|
295 | 305 | year = int(thisFile[1:5]) |
|
|
296 | 306 | doy = int(thisFile[5:8]) |
|
|
297 | 307 | except: |
|
|
298 | 308 | continue |
|
|
299 | 309 | |
|
|
300 | 310 | if (os.path.splitext(thisFile)[-1].lower() != ext.lower()): |
|
|
301 | 311 | continue |
|
|
302 | 312 | |
|
|
303 | 313 | validFilelist.append(thisFile) |
|
|
304 | 314 | |
|
|
305 | 315 | myfile = fnmatch.filter( |
|
|
306 | 316 | validFilelist, '*%4.4d%3.3d%3.3d*' % (year, doy, set)) |
|
|
307 | 317 | |
|
|
308 | 318 | if len(myfile) != 0: |
|
|
309 | 319 | return myfile[0] |
|
|
310 | 320 | else: |
|
|
311 | 321 | filename = '*%4.4d%3.3d%3.3d%s' % (year, doy, set, ext.lower()) |
|
|
312 | 322 | print('the filename %s does not exist' % filename) |
|
|
313 | 323 | print('...going to the last file: ') |
|
|
314 | 324 | |
|
|
315 | 325 | if validFilelist: |
|
|
316 | 326 | validFilelist = sorted(validFilelist, key=str.lower) |
|
|
317 | 327 | return validFilelist[-1] |
|
|
318 | 328 | |
|
|
319 | 329 | return None |
|
|
320 | 330 | |
|
|
321 | 331 | |
|
|
322 | 332 | def getlastFileFromPath(path, ext): |
|
|
323 | 333 | """ |
|
|
324 | 334 | Depura el fileList dejando solo los que cumplan el formato de "PYYYYDDDSSS.ext" |
|
|
325 | 335 | al final de la depuracion devuelve el ultimo file de la lista que quedo. |
|
|
326 | 336 | |
|
|
327 | 337 | Input: |
|
|
328 | 338 | fileList : lista conteniendo todos los files (sin path) que componen una determinada carpeta |
|
|
329 | 339 | ext : extension de los files contenidos en una carpeta |
|
|
330 | 340 | |
|
|
331 | 341 | Return: |
|
|
332 | 342 | El ultimo file de una determinada carpeta, no se considera el path. |
|
|
333 | 343 | """ |
|
|
334 | 344 | validFilelist = [] |
|
|
335 | 345 | fileList = os.listdir(path) |
|
|
336 | 346 | |
|
|
337 | 347 | # 0 1234 567 89A BCDE |
|
|
338 | 348 | # H YYYY DDD SSS .ext |
|
|
339 | 349 | |
|
|
340 | 350 | for thisFile in fileList: |
|
|
341 | 351 | |
|
|
342 | 352 | year = thisFile[1:5] |
|
|
343 | 353 | if not isNumber(year): |
|
|
344 | 354 | continue |
|
|
345 | 355 | |
|
|
346 | 356 | doy = thisFile[5:8] |
|
|
347 | 357 | if not isNumber(doy): |
|
|
348 | 358 | continue |
|
|
349 | 359 | |
|
|
350 | 360 | year = int(year) |
|
|
351 | 361 | doy = int(doy) |
|
|
352 | 362 | |
|
|
353 | 363 | if (os.path.splitext(thisFile)[-1].lower() != ext.lower()): |
|
|
354 | 364 | continue |
|
|
355 | 365 | |
|
|
356 | 366 | validFilelist.append(thisFile) |
|
|
357 | 367 | |
|
|
358 | 368 | if validFilelist: |
|
|
359 | 369 | validFilelist = sorted(validFilelist, key=str.lower) |
|
|
360 | 370 | return validFilelist[-1] |
|
|
361 | 371 | |
|
|
362 | 372 | return None |
|
|
363 | 373 | |
|
|
364 | 374 | |
|
|
365 | def checkForRealPath(path, foldercounter, year, doy, set, ext): | |
|
|
366 | """ | |
|
|
367 | Por ser Linux Case Sensitive entonces checkForRealPath encuentra el nombre correcto de un path, | |
|
|
368 | Prueba por varias combinaciones de nombres entre mayusculas y minusculas para determinar | |
|
|
369 | el path exacto de un determinado file. | |
|
|
370 | ||
|
|
371 | Example : | |
|
|
372 | nombre correcto del file es .../.../D2009307/P2009307367.ext | |
|
|
373 | ||
|
|
374 | Entonces la funcion prueba con las siguientes combinaciones | |
|
|
375 | .../.../y2009307367.ext | |
|
|
376 | .../.../Y2009307367.ext | |
|
|
377 | .../.../x2009307/y2009307367.ext | |
|
|
378 | .../.../x2009307/Y2009307367.ext | |
|
|
379 | .../.../X2009307/y2009307367.ext | |
|
|
380 | .../.../X2009307/Y2009307367.ext | |
|
|
381 | siendo para este caso, la ultima combinacion de letras, identica al file buscado | |
|
|
382 | ||
|
|
383 | Return: | |
|
|
384 | Si encuentra la cobinacion adecuada devuelve el path completo y el nombre del file | |
|
|
385 | caso contrario devuelve None como path y el la ultima combinacion de nombre en mayusculas | |
|
|
386 | para el filename | |
|
|
387 | """ | |
|
|
388 | fullfilename = None | |
|
|
389 | find_flag = False | |
|
|
390 | filename = None | |
|
|
391 | ||
|
|
392 | prefixDirList = [None, 'd', 'D'] | |
|
|
393 | if ext.lower() == ".r": # voltage | |
|
|
394 | prefixFileList = ['d', 'D'] | |
|
|
395 | elif ext.lower() == ".pdata": # spectra | |
|
|
396 | prefixFileList = ['p', 'P'] | |
|
|
397 | else: | |
|
|
398 | return None, filename | |
|
|
399 | ||
|
|
400 | # barrido por las combinaciones posibles | |
|
|
401 | for prefixDir in prefixDirList: | |
|
|
402 | thispath = path | |
|
|
403 | if prefixDir != None: | |
|
|
404 | # formo el nombre del directorio xYYYYDDD (x=d o x=D) | |
|
|
405 | if foldercounter == 0: | |
|
|
406 | thispath = os.path.join(path, "%s%04d%03d" % | |
|
|
407 | (prefixDir, year, doy)) | |
|
|
408 | else: | |
|
|
409 | thispath = os.path.join(path, "%s%04d%03d_%02d" % ( | |
|
|
410 | prefixDir, year, doy, foldercounter)) | |
|
|
411 | for prefixFile in prefixFileList: # barrido por las dos combinaciones posibles de "D" | |
|
|
412 | # formo el nombre del file xYYYYDDDSSS.ext | |
|
|
413 | filename = "%s%04d%03d%03d%s" % (prefixFile, year, doy, set, ext) | |
|
|
414 | fullfilename = os.path.join( | |
|
|
415 | thispath, filename) # formo el path completo | |
|
|
416 | ||
|
|
417 | if os.path.exists(fullfilename): # verifico que exista | |
|
|
418 | find_flag = True | |
|
|
419 | break | |
|
|
420 | if find_flag: | |
|
|
421 | break | |
|
|
422 | ||
|
|
423 | if not(find_flag): | |
|
|
424 | return None, filename | |
|
|
425 | ||
|
|
426 | return fullfilename, filename | |
|
|
427 | ||
|
|
428 | ||
|
|
429 | 375 | def isRadarFolder(folder): |
|
|
430 | 376 | try: |
|
|
431 | 377 | year = int(folder[1:5]) |
|
|
432 | 378 | doy = int(folder[5:8]) |
|
|
433 | 379 | except: |
|
|
434 | 380 | return 0 |
|
|
435 | 381 | |
|
|
436 | 382 | return 1 |
|
|
437 | 383 | |
|
|
438 | 384 | |
|
|
439 | 385 | def isRadarFile(file): |
|
|
440 | 386 | try: |
|
|
441 | 387 | year = int(file[1:5]) |
|
|
442 | 388 | doy = int(file[5:8]) |
|
|
443 | 389 | set = int(file[8:11]) |
|
|
444 | 390 | except: |
|
|
445 | 391 | return 0 |
|
|
446 | 392 | |
|
|
447 | 393 | return 1 |
|
|
448 | 394 | |
|
|
449 | 395 | |
|
|
450 | 396 | def getDateFromRadarFile(file): |
|
|
451 | 397 | try: |
|
|
452 | 398 | year = int(file[1:5]) |
|
|
453 | 399 | doy = int(file[5:8]) |
|
|
454 | 400 | set = int(file[8:11]) |
|
|
455 | 401 | except: |
|
|
456 | 402 | return None |
|
|
457 | 403 | |
|
|
458 | 404 | thisDate = datetime.date(year, 1, 1) + datetime.timedelta(doy - 1) |
|
|
459 | 405 | return thisDate |
|
|
460 | 406 | |
|
|
461 | 407 | |
|
|
462 | 408 | def getDateFromRadarFolder(folder): |
|
|
463 | 409 | try: |
|
|
464 | 410 | year = int(folder[1:5]) |
|
|
465 | 411 | doy = int(folder[5:8]) |
|
|
466 | 412 | except: |
|
|
467 | 413 | return None |
|
|
468 | 414 | |
|
|
469 | 415 | thisDate = datetime.date(year, 1, 1) + datetime.timedelta(doy - 1) |
|
|
470 | 416 | return thisDate |
|
|
471 | 417 | |
|
|
418 | def parse_format(s, fmt): | |
|
|
419 | ||
|
|
420 | for i in range(fmt.count('%')): | |
|
|
421 | x = fmt.index('%') | |
|
|
422 | d = DT_DIRECTIVES[fmt[x:x+2]] | |
|
|
423 | fmt = fmt.replace(fmt[x:x+2], s[x:x+d]) | |
|
|
424 | return fmt | |
|
|
472 | 425 | |
|
|
473 | class JRODataIO: | |
|
|
426 | class Reader(object): | |
|
|
474 | 427 | |
|
|
475 | 428 | c = 3E8 |
|
|
476 | ||
|
|
477 | 429 | isConfig = False |
|
|
478 | ||
|
|
479 | basicHeaderObj = None | |
|
|
480 | ||
|
|
481 | systemHeaderObj = None | |
|
|
482 | ||
|
|
483 | radarControllerHeaderObj = None | |
|
|
484 | ||
|
|
485 | processingHeaderObj = None | |
|
|
486 | ||
|
|
487 | 430 | dtype = None |
|
|
488 | ||
|
|
489 | 431 | pathList = [] |
|
|
490 | ||
|
|
491 | 432 | filenameList = [] |
|
|
492 | ||
|
|
433 | datetimeList = [] | |
|
|
493 | 434 | filename = None |
|
|
494 | ||
|
|
495 | 435 | ext = None |
|
|
496 | ||
|
|
497 | 436 | flagIsNewFile = 1 |
|
|
498 | ||
|
|
499 | 437 | flagDiscontinuousBlock = 0 |
|
|
500 | ||
|
|
501 | 438 | flagIsNewBlock = 0 |
|
|
502 | ||
|
|
439 | flagNoMoreFiles = 0 | |
|
|
503 | 440 | fp = None |
|
|
504 | ||
|
|
505 | 441 | firstHeaderSize = 0 |
|
|
506 | ||
|
|
507 | 442 | basicHeaderSize = 24 |
|
|
508 | ||
|
|
509 | 443 | versionFile = 1103 |
|
|
510 | ||
|
|
511 | 444 | fileSize = None |
|
|
512 | ||
|
|
513 | # ippSeconds = None | |
|
|
514 | ||
|
|
515 | 445 | fileSizeByHeader = None |
|
|
516 | ||
|
|
517 | fileIndex = None | |
|
|
518 | ||
|
|
446 | fileIndex = -1 | |
|
|
519 | 447 | profileIndex = None |
|
|
520 | ||
|
|
521 | blockIndex = None | |
|
|
522 | ||
|
|
523 | nTotalBlocks = None | |
|
|
524 | ||
|
|
448 | blockIndex = 0 | |
|
|
449 | nTotalBlocks = 0 | |
|
|
525 | 450 | maxTimeStep = 30 |
|
|
526 | ||
|
|
527 | 451 | lastUTTime = None |
|
|
528 | ||
|
|
529 | 452 | datablock = None |
|
|
530 | ||
|
|
531 | 453 | dataOut = None |
|
|
532 | ||
|
|
533 | blocksize = None | |
|
|
534 | ||
|
|
535 | 454 | getByBlock = False |
|
|
536 | ||
|
|
537 | def __init__(self): | |
|
|
538 | ||
|
|
539 | raise NotImplementedError | |
|
|
455 | path = None | |
|
|
456 | startDate = None | |
|
|
457 | endDate = None | |
|
|
458 | startTime = datetime.time(0, 0, 0) | |
|
|
459 | endTime = datetime.time(23, 59, 59) | |
|
|
460 | set = None | |
|
|
461 | expLabel = "" | |
|
|
462 | online = False | |
|
|
463 | delay = 60 | |
|
|
464 | nTries = 3 # quantity tries | |
|
|
465 | nFiles = 3 # number of files for searching | |
|
|
466 | walk = True | |
|
|
467 | getblock = False | |
|
|
468 | nTxs = 1 | |
|
|
469 | realtime = False | |
|
|
470 | blocksize = 0 | |
|
|
471 | blocktime = None | |
|
|
472 | warnings = True | |
|
|
473 | verbose = True | |
|
|
474 | server = None | |
|
|
475 | format = None | |
|
|
476 | oneDDict = None | |
|
|
477 | twoDDict = None | |
|
|
478 | independentParam = None | |
|
|
479 | filefmt = None | |
|
|
480 | folderfmt = None | |
|
|
540 | 481 | |
|
|
541 | 482 | def run(self): |
|
|
542 | 483 | |
|
|
543 | raise NotImplementedError | |
|
|
544 | ||
|
|
545 | def getDtypeWidth(self): | |
|
|
546 | ||
|
|
547 | dtype_index = get_dtype_index(self.dtype) | |
|
|
548 | dtype_width = get_dtype_width(dtype_index) | |
|
|
549 | ||
|
|
550 | return dtype_width | |
|
|
484 | raise NotImplementedError | |
|
|
551 | 485 | |
|
|
552 | 486 | def getAllowedArgs(self): |
|
|
553 | 487 | if hasattr(self, '__attrs__'): |
|
|
554 | 488 | return self.__attrs__ |
|
|
555 | 489 | else: |
|
|
556 | 490 | return inspect.getargspec(self.run).args |
|
|
557 | 491 | |
|
|
492 | def set_kwargs(self, **kwargs): | |
|
|
558 | 493 | |
|
|
559 | class JRODataReader(JRODataIO): | |
|
|
560 | ||
|
|
561 | online = 0 | |
|
|
562 | ||
|
|
563 | realtime = 0 | |
|
|
564 | ||
|
|
565 | nReadBlocks = 0 | |
|
|
566 | ||
|
|
567 | delay = 10 # number of seconds waiting a new file | |
|
|
568 | ||
|
|
569 | nTries = 3 # quantity tries | |
|
|
570 | ||
|
|
571 | nFiles = 3 # number of files for searching | |
|
|
572 | ||
|
|
573 | path = None | |
|
|
574 | ||
|
|
575 | foldercounter = 0 | |
|
|
576 | ||
|
|
577 | flagNoMoreFiles = 0 | |
|
|
578 | ||
|
|
579 | datetimeList = [] | |
|
|
580 | ||
|
|
581 | __isFirstTimeOnline = 1 | |
|
|
582 | ||
|
|
583 | __printInfo = True | |
|
|
494 | for key, value in kwargs.items(): | |
|
|
495 | setattr(self, key, value) | |
|
|
496 | ||
|
|
497 | def find_folders(self, path, startDate, endDate, folderfmt, last=False): | |
|
|
584 | 498 | |
|
|
585 | profileIndex = None | |
|
|
586 | ||
|
|
587 | nTxs = 1 | |
|
|
499 | folders = [x for f in path.split(',') | |
|
|
500 | for x in os.listdir(f) if os.path.isdir(os.path.join(f, x))] | |
|
|
501 | folders.sort() | |
|
|
588 | 502 | |
|
|
589 | txIndex = None | |
|
|
503 | if last: | |
|
|
504 | folders = [folders[-1]] | |
|
|
590 | 505 | |
|
|
591 | # Added-------------------- | |
|
|
592 | ||
|
|
593 | selBlocksize = None | |
|
|
594 | ||
|
|
595 | selBlocktime = None | |
|
|
596 | ||
|
|
597 | def __init__(self): | |
|
|
598 | """ | |
|
|
599 | This class is used to find data files | |
|
|
600 | ||
|
|
601 |
|
|
|
|
602 | reader = JRODataReader() | |
|
|
603 | fileList = reader.findDataFiles() | |
|
|
506 | for folder in folders: | |
|
|
507 | try: | |
|
|
508 | dt = datetime.datetime.strptime(parse_format(folder, folderfmt), folderfmt).date() | |
|
|
509 | if dt >= startDate and dt <= endDate: | |
|
|
510 | yield os.path.join(path, folder) | |
|
|
511 | else: | |
|
|
512 | log.log('Skiping folder {}'.format(folder), self.name) | |
|
|
513 | except Exception as e: | |
|
|
514 | log.log('Skiping folder {}'.format(folder), self.name) | |
|
|
515 | continue | |
|
|
516 | return | |
|
|
517 | ||
|
|
518 | def find_files(self, folders, ext, filefmt, startDate=None, endDate=None, | |
|
|
519 | expLabel='', last=False): | |
|
|
520 | ||
|
|
521 | for path in folders: | |
|
|
522 | files = glob.glob1(path, '*{}'.format(ext)) | |
|
|
523 | files.sort() | |
|
|
524 | if last: | |
|
|
525 | if files: | |
|
|
526 | fo = files[-1] | |
|
|
527 | try: | |
|
|
528 | dt = datetime.datetime.strptime(parse_format(fo, filefmt), filefmt).date() | |
|
|
529 | yield os.path.join(path, expLabel, fo) | |
|
|
530 | except Exception as e: | |
|
|
531 | pass | |
|
|
532 | return None | |
|
|
533 | else: | |
|
|
534 | return None | |
|
|
604 | 535 | |
|
|
605 | """ | |
|
|
606 | pass | |
|
|
536 | for fo in files: | |
|
|
537 | try: | |
|
|
538 | dt = datetime.datetime.strptime(parse_format(fo, filefmt), filefmt).date() | |
|
|
539 | if dt >= startDate and dt <= endDate: | |
|
|
540 | yield os.path.join(path, expLabel, fo) | |
|
|
541 | else: | |
|
|
542 | log.log('Skiping file {}'.format(fo), self.name) | |
|
|
543 | except Exception as e: | |
|
|
544 | log.log('Skiping file {}'.format(fo), self.name) | |
|
|
545 | continue | |
|
|
607 | 546 | |
|
|
608 | def createObjByDefault(self): | |
|
|
609 | """ | |
|
|
547 | def searchFilesOffLine(self, path, startDate, endDate, | |
|
|
548 | expLabel, ext, walk, | |
|
|
549 | filefmt, folderfmt): | |
|
|
550 | """Search files in offline mode for the given arguments | |
|
|
610 | 551 | |
|
|
552 | Return: | |
|
|
553 | Generator of files | |
|
|
611 | 554 | """ |
|
|
612 | raise NotImplementedError | |
|
|
613 | ||
|
|
614 | def getBlockDimension(self): | |
|
|
615 | ||
|
|
616 | raise NotImplementedError | |
|
|
617 | 555 | |
|
|
618 | def searchFilesOffLine(self, | |
|
|
619 | path, | |
|
|
620 |
|
|
|
|
621 | endDate=None, | |
|
|
622 | startTime=datetime.time(0, 0, 0), | |
|
|
623 | endTime=datetime.time(23, 59, 59), | |
|
|
624 | set=None, | |
|
|
625 | expLabel='', | |
|
|
626 | ext='.r', | |
|
|
627 | cursor=None, | |
|
|
628 | skip=None, | |
|
|
629 | walk=True): | |
|
|
630 | ||
|
|
631 | self.filenameList = [] | |
|
|
632 | self.datetimeList = [] | |
|
|
633 | ||
|
|
634 | pathList = [] | |
|
|
635 | ||
|
|
636 | dateList, pathList = self.findDatafiles( | |
|
|
637 | path, startDate, endDate, expLabel, ext, walk, include_path=True) | |
|
|
638 | ||
|
|
639 | if dateList == []: | |
|
|
640 | return [], [] | |
|
|
641 | ||
|
|
642 | if len(dateList) > 1: | |
|
|
643 | print("[Reading] Data found for date range [%s - %s]: total days = %d" % (startDate, endDate, len(dateList))) | |
|
|
556 | if walk: | |
|
|
557 | folders = self.find_folders( | |
|
|
558 | path, startDate, endDate, folderfmt) | |
|
|
644 | 559 | else: |
|
|
645 | print("[Reading] Data found for date range [%s - %s]: date = %s" % (startDate, endDate, dateList[0])) | |
|
|
646 | ||
|
|
647 | filenameList = [] | |
|
|
648 | datetimeList = [] | |
|
|
560 | folders = path.split(',') | |
|
|
649 | 561 | |
|
|
650 | for thisPath in pathList: | |
|
|
651 | ||
|
|
652 | fileList = glob.glob1(thisPath, "*%s" % ext) | |
|
|
653 | fileList.sort() | |
|
|
654 | ||
|
|
655 | for file in fileList: | |
|
|
656 | ||
|
|
657 | filename = os.path.join(thisPath, file) | |
|
|
658 | ||
|
|
659 | if not isFileInDateRange(filename, startDate, endDate): | |
|
|
660 | continue | |
|
|
661 | ||
|
|
662 | thisDatetime = isFileInTimeRange( | |
|
|
663 | filename, startDate, endDate, startTime, endTime) | |
|
|
664 | ||
|
|
665 | if not(thisDatetime): | |
|
|
666 | continue | |
|
|
667 | ||
|
|
668 | filenameList.append(filename) | |
|
|
669 | datetimeList.append(thisDatetime) | |
|
|
670 | ||
|
|
671 | if cursor is not None and skip is not None: | |
|
|
672 | filenameList = filenameList[cursor * skip:cursor * skip + skip] | |
|
|
673 | datetimeList = datetimeList[cursor * skip:cursor * skip + skip] | |
|
|
674 | ||
|
|
675 | if not(filenameList): | |
|
|
676 | print("[Reading] Time range selected invalid [%s - %s]: No *%s files in %s)" % (startTime, endTime, ext, path)) | |
|
|
677 | return [], [] | |
|
|
678 | ||
|
|
679 | print("[Reading] %d file(s) was(were) found in time range: %s - %s" % (len(filenameList), startTime, endTime)) | |
|
|
680 | ||
|
|
681 | # for i in range(len(filenameList)): | |
|
|
682 | # print "[Reading] %s -> [%s]" %(filenameList[i], datetimeList[i].ctime()) | |
|
|
683 | ||
|
|
684 | self.filenameList = filenameList | |
|
|
685 | self.datetimeList = datetimeList | |
|
|
686 | ||
|
|
687 | return pathList, filenameList | |
|
|
688 | ||
|
|
689 | def __searchFilesOnLine(self, path, expLabel="", ext=None, walk=True, set=None): | |
|
|
690 | """ | |
|
|
691 | Busca el ultimo archivo de la ultima carpeta (determinada o no por startDateTime) y | |
|
|
692 | devuelve el archivo encontrado ademas de otros datos. | |
|
|
693 | ||
|
|
694 | Input: | |
|
|
695 | path : carpeta donde estan contenidos los files que contiene data | |
|
|
696 | ||
|
|
697 | expLabel : Nombre del subexperimento (subfolder) | |
|
|
698 | ||
|
|
699 | ext : extension de los files | |
|
|
700 | ||
|
|
562 | return self.find_files( | |
|
|
563 | folders, ext, filefmt, startDate, endDate, expLabel) | |
|
|
564 | ||
|
|
565 | def searchFilesOnLine(self, path, startDate, endDate, | |
|
|
566 | expLabel, ext, walk, | |
|
|
567 | filefmt, folderfmt): | |
|
|
568 | """Search for the last file of the last folder | |
|
|
569 | ||
|
|
570 | Arguments: | |
|
|
571 | path : carpeta donde estan contenidos los files que contiene data | |
|
|
572 | expLabel : Nombre del subexperimento (subfolder) | |
|
|
573 | ext : extension de los files | |
|
|
701 | 574 | walk : Si es habilitado no realiza busquedas dentro de los ubdirectorios (doypath) |
|
|
702 | 575 | |
|
|
703 | 576 | Return: |
|
|
704 | directory : eL directorio donde esta el file encontrado | |
|
|
705 | filename : el ultimo file de una determinada carpeta | |
|
|
706 | year : el anho | |
|
|
707 | doy : el numero de dia del anho | |
|
|
708 | set : el set del archivo | |
|
|
709 | ||
|
|
710 | ||
|
|
577 | generator with the full path of last filename | |
|
|
711 | 578 | """ |
|
|
712 | if not os.path.isdir(path): | |
|
|
713 | return None, None, None, None, None, None | |
|
|
714 | ||
|
|
715 | dirList = [] | |
|
|
716 | ||
|
|
717 | if not walk: | |
|
|
718 | fullpath = path | |
|
|
719 | foldercounter = 0 | |
|
|
579 | ||
|
|
580 | if walk: | |
|
|
581 | folders = self.find_folders( | |
|
|
582 | path, startDate, endDate, folderfmt, last=True) | |
|
|
720 | 583 | else: |
|
|
721 | # Filtra solo los directorios | |
|
|
722 | for thisPath in os.listdir(path): | |
|
|
723 | if not os.path.isdir(os.path.join(path, thisPath)): | |
|
|
724 | continue | |
|
|
725 | if not isRadarFolder(thisPath): | |
|
|
726 | continue | |
|
|
727 | ||
|
|
728 | dirList.append(thisPath) | |
|
|
729 | ||
|
|
730 | if not(dirList): | |
|
|
731 | return None, None, None, None, None, None | |
|
|
732 | ||
|
|
733 | dirList = sorted(dirList, key=str.lower) | |
|
|
584 | folders = path.split(',') | |
|
|
585 | ||
|
|
586 | return self.find_files( | |
|
|
587 | folders, ext, filefmt, startDate, endDate, expLabel, last=True) | |
|
|
734 | 588 | |
|
|
735 | doypath = dirList[-1] | |
|
|
736 | foldercounter = int(doypath.split('_')[1]) if len( | |
|
|
737 | doypath.split('_')) > 1 else 0 | |
|
|
738 | fullpath = os.path.join(path, doypath, expLabel) | |
|
|
589 | def setNextFile(self): | |
|
|
590 | """Set the next file to be readed open it and parse de file header""" | |
|
|
739 | 591 | |
|
|
740 | print("[Reading] %s folder was found: " % (fullpath)) | |
|
|
592 | if self.fp != None: | |
|
|
593 | self.fp.close() | |
|
|
741 | 594 | |
|
|
742 |
if se |
|
|
|
743 | filename = getlastFileFromPath(fullpath, ext) | |
|
|
595 | if self.online: | |
|
|
596 | newFile = self.setNextFileOnline() | |
|
|
744 | 597 | else: |
|
|
745 | filename = getFileFromSet(fullpath, ext, set) | |
|
|
746 | ||
|
|
747 |
if not( |
|
|
|
748 | return None, None, None, None, None, None | |
|
|
749 | ||
|
|
750 | print("[Reading] %s file was found" % (filename)) | |
|
|
751 | ||
|
|
752 | if not(self.__verifyFile(os.path.join(fullpath, filename))): | |
|
|
753 | return None, None, None, None, None, None | |
|
|
754 | ||
|
|
755 | year = int(filename[1:5]) | |
|
|
756 | doy = int(filename[5:8]) | |
|
|
757 | set = int(filename[8:11]) | |
|
|
758 | ||
|
|
759 | return fullpath, foldercounter, filename, year, doy, set | |
|
|
760 | ||
|
|
761 | def __setNextFileOffline(self): | |
|
|
762 | ||
|
|
763 | idFile = self.fileIndex | |
|
|
764 | ||
|
|
765 | while (True): | |
|
|
766 | idFile += 1 | |
|
|
767 | if not(idFile < len(self.filenameList)): | |
|
|
768 | self.flagNoMoreFiles = 1 | |
|
|
769 | return 0 | |
|
|
770 | ||
|
|
771 | filename = self.filenameList[idFile] | |
|
|
772 | ||
|
|
773 | if not(self.__verifyFile(filename)): | |
|
|
774 | continue | |
|
|
775 | ||
|
|
776 | fileSize = os.path.getsize(filename) | |
|
|
777 | fp = open(filename, 'rb') | |
|
|
778 | break | |
|
|
779 | ||
|
|
780 | self.flagIsNewFile = 1 | |
|
|
781 | self.fileIndex = idFile | |
|
|
782 | self.filename = filename | |
|
|
783 | self.fileSize = fileSize | |
|
|
784 | self.fp = fp | |
|
|
785 | ||
|
|
786 | # print "[Reading] Setting the file: %s"%self.filename | |
|
|
598 | newFile = self.setNextFileOffline() | |
|
|
599 | ||
|
|
600 | if not(newFile): | |
|
|
601 | if self.online: | |
|
|
602 | raise schainpy.admin.SchainError('Time to wait for new files reach') | |
|
|
603 | else: | |
|
|
604 | if self.fileIndex == -1: | |
|
|
605 | raise schainpy.admin.SchainWarning('No files found in the given path') | |
|
|
606 | else: | |
|
|
607 | raise schainpy.admin.SchainWarning('No more files to read') | |
|
|
608 | ||
|
|
609 | if not(self.verifyFile(self.filename)): | |
|
|
610 | self.setNextFile() | |
|
|
611 | ||
|
|
612 | log.log('Opening file: %s' % self.filename, self.name) | |
|
|
787 | 613 | |
|
|
788 | return 1 | |
|
|
614 | self.readFirstHeader() | |
|
|
615 | self.nReadBlocks = 0 | |
|
|
789 | 616 | |
|
|
790 |
def |
|
|
|
791 | """ | |
|
|
792 | Busca el siguiente file que tenga suficiente data para ser leida, dentro de un folder especifico, si | |
|
|
793 | no encuentra un file valido espera un tiempo determinado y luego busca en los posibles n files | |
|
|
794 | siguientes. | |
|
|
617 | def setNextFileOnline(self): | |
|
|
618 | """Check for the next file to be readed in online mode. | |
|
|
795 | 619 | |
|
|
796 |
|
|
|
|
797 | self.flagIsNewFile | |
|
|
620 | Set: | |
|
|
798 | 621 | self.filename |
|
|
799 | self.fileSize | |
|
|
800 | 622 | self.fp |
|
|
801 |
self.se |
|
|
|
802 | self.flagNoMoreFiles | |
|
|
803 | ||
|
|
623 | self.filesize | |
|
|
624 | ||
|
|
804 | 625 | Return: |
|
|
805 | 0 : si luego de una busqueda del siguiente file valido este no pudo ser encontrado | |
|
|
806 | 1 : si el file fue abierto con exito y esta listo a ser leido | |
|
|
626 | boolean | |
|
|
807 | 627 | |
|
|
808 | Excepciones: | |
|
|
809 | Si un determinado file no puede ser abierto | |
|
|
810 | 628 | """ |
|
|
811 |
nFile |
|
|
|
812 |
|
|
|
|
813 | firstTime_flag = True | |
|
|
814 | ||
|
|
815 | self.set += 1 | |
|
|
629 | nextFile = True | |
|
|
630 | nextDay = False | |
|
|
816 | 631 | |
|
|
817 | if self.set > 999: | |
|
|
818 | self.set = 0 | |
|
|
819 | self.foldercounter += 1 | |
|
|
820 | ||
|
|
821 | # busca el 1er file disponible | |
|
|
822 | fullfilename, filename = checkForRealPath( | |
|
|
823 | self.path, self.foldercounter, self.year, self.doy, self.set, self.ext) | |
|
|
824 | if fullfilename: | |
|
|
825 | if self.__verifyFile(fullfilename, False): | |
|
|
826 | fileOk_flag = True | |
|
|
827 | ||
|
|
828 | # si no encuentra un file entonces espera y vuelve a buscar | |
|
|
829 | if not(fileOk_flag): | |
|
|
830 | # busco en los siguientes self.nFiles+1 files posibles | |
|
|
831 | for nFiles in range(self.nFiles + 1): | |
|
|
832 | ||
|
|
833 | if firstTime_flag: # si es la 1era vez entonces hace el for self.nTries veces | |
|
|
834 | tries = self.nTries | |
|
|
835 | else: | |
|
|
836 | tries = 1 # si no es la 1era vez entonces solo lo hace una vez | |
|
|
837 | ||
|
|
838 | for nTries in range(tries): | |
|
|
839 | if firstTime_flag: | |
|
|
840 | log.warning( | |
|
|
841 | "Waiting %0.2f sec for the next file: \"%s\" , try %03d ..." % (self.delay, filename, nTries + 1), | |
|
|
842 | self.name) | |
|
|
843 | time.sleep(self.delay) | |
|
|
844 | else: | |
|
|
845 | log.warning( | |
|
|
846 | "Searching the next \"%s%04d%03d%03d%s\" file ..." % (self.optchar, self.year, self.doy, self.set, self.ext), | |
|
|
847 | self.name) | |
|
|
848 | ||
|
|
849 | fullfilename, filename = checkForRealPath( | |
|
|
850 | self.path, self.foldercounter, self.year, self.doy, self.set, self.ext) | |
|
|
851 | if fullfilename: | |
|
|
852 | if self.__verifyFile(fullfilename): | |
|
|
853 | fileOk_flag = True | |
|
|
854 | break | |
|
|
855 | ||
|
|
856 | if fileOk_flag: | |
|
|
632 | for nFiles in range(self.nFiles+1): | |
|
|
633 | for nTries in range(self.nTries): | |
|
|
634 | fullfilename, filename = self.checkForRealPath(nextFile, nextDay) | |
|
|
635 | if fullfilename is not None: | |
|
|
857 | 636 | break |
|
|
858 | ||
|
|
859 | firstTime_flag = False | |
|
|
860 | ||
|
|
861 | 637 | log.warning( |
|
|
862 | 'Skipping the file {} due to this file doesn\'t exist'.format(filename), | |
|
|
638 | "Waiting %0.2f sec for the next file: \"%s\" , try %02d ..." % (self.delay, filename, nTries + 1), | |
|
|
863 | 639 | self.name) |
|
|
864 |
self. |
|
|
|
640 | time.sleep(self.delay) | |
|
|
641 | nextFile = False | |
|
|
642 | continue | |
|
|
643 | ||
|
|
644 | if fullfilename: | |
|
|
645 | break | |
|
|
646 | ||
|
|
647 | self.nTries = 1 | |
|
|
648 | nextFile = True | |
|
|
865 | 649 | |
|
|
866 | # si no encuentro el file buscado cambio de carpeta y busco en la siguiente carpeta | |
|
|
867 | if nFiles == (self.nFiles - 1): | |
|
|
868 | self.set = 0 | |
|
|
869 | self.doy += 1 | |
|
|
870 | self.foldercounter = 0 | |
|
|
650 | if nFiles == (self.nFiles - 1): | |
|
|
651 | log.log('Trying with next day...', self.name) | |
|
|
652 | nextDay = True | |
|
|
871 | 653 | |
|
|
872 |
if f |
|
|
|
654 | if fullfilename: | |
|
|
873 | 655 | self.fileSize = os.path.getsize(fullfilename) |
|
|
874 | 656 | self.filename = fullfilename |
|
|
875 | 657 | self.flagIsNewFile = 1 |
|
|
876 | 658 | if self.fp != None: |
|
|
877 | 659 | self.fp.close() |
|
|
878 | 660 | self.fp = open(fullfilename, 'rb') |
|
|
879 | 661 | self.flagNoMoreFiles = 0 |
|
|
880 | else: | |
|
|
881 | raise schainpy.admin.SchainError('Time for waiting new files reach') | |
|
|
882 | self.fileSize = 0 | |
|
|
883 | self.filename = None | |
|
|
884 | self.flagIsNewFile = 0 | |
|
|
885 | self.fp = None | |
|
|
662 | self.fileIndex += 1 | |
|
|
663 | return 1 | |
|
|
664 | else: | |
|
|
665 | return 0 | |
|
|
666 | ||
|
|
667 | def setNextFileOffline(self): | |
|
|
668 | """Open the next file to be readed in offline mode""" | |
|
|
669 | ||
|
|
670 | try: | |
|
|
671 | filename = next(self.filenameList) | |
|
|
672 | self.fileIndex +=1 | |
|
|
673 | except StopIteration: | |
|
|
886 | 674 | self.flagNoMoreFiles = 1 |
|
|
675 | return 0 | |
|
|
887 | 676 | |
|
|
888 | return fileOk_flag | |
|
|
677 | self.filename = filename | |
|
|
678 | self.fileSize = os.path.getsize(filename) | |
|
|
679 | self.fp = open(filename, 'rb') | |
|
|
680 | self.flagIsNewFile = 1 | |
|
|
889 | 681 | |
|
|
890 | def setNextFile(self): | |
|
|
891 | if self.fp != None: | |
|
|
892 | self.fp.close() | |
|
|
682 | return 1 | |
|
|
683 | ||
|
|
684 | def verifyFile(self, filename): | |
|
|
685 | """Check for a valid file | |
|
|
686 | ||
|
|
687 | Arguments: | |
|
|
688 | filename -- full path filename | |
|
|
689 | ||
|
|
690 | Return: | |
|
|
691 | boolean | |
|
|
692 | """ | |
|
|
893 | 693 | |
|
|
894 | if self.online: | |
|
|
895 | newFile = self.__setNextFileOnline() | |
|
|
896 | else: | |
|
|
897 | newFile = self.__setNextFileOffline() | |
|
|
694 | return True | |
|
|
898 | 695 | |
|
|
899 | if not(newFile): | |
|
|
900 | raise schainpy.admin.SchainWarning('No more files to read') | |
|
|
901 | ||
|
|
696 | def checkForRealPath(self, nextFile, nextDay): | |
|
|
697 | """Check if the next file to be readed exists""" | |
|
|
902 | 698 | |
|
|
903 | if self.verbose: | |
|
|
904 | print('[Reading] Setting the file: %s' % self.filename) | |
|
|
699 | raise NotImplementedError | |
|
|
700 | ||
|
|
701 | def readFirstHeader(self): | |
|
|
702 | """Parse the file header""" | |
|
|
905 | 703 | |
|
|
906 | self.__readFirstHeader() | |
|
|
907 | self.nReadBlocks = 0 | |
|
|
908 | return 1 | |
|
|
704 | pass | |
|
|
705 | ||
|
|
706 | class JRODataReader(Reader): | |
|
|
707 | ||
|
|
708 | utc = 0 | |
|
|
709 | nReadBlocks = 0 | |
|
|
710 | foldercounter = 0 | |
|
|
711 | firstHeaderSize = 0 | |
|
|
712 | basicHeaderSize = 24 | |
|
|
713 | __isFirstTimeOnline = 1 | |
|
|
714 | __printInfo = True | |
|
|
715 | filefmt = "*%Y%j***" | |
|
|
716 | folderfmt = "*%Y%j" | |
|
|
909 | 717 | |
|
|
718 | def getDtypeWidth(self): | |
|
|
719 | ||
|
|
720 | dtype_index = get_dtype_index(self.dtype) | |
|
|
721 | dtype_width = get_dtype_width(dtype_index) | |
|
|
722 | ||
|
|
723 | return dtype_width | |
|
|
724 | ||
|
|
725 | def checkForRealPath(self, nextFile, nextDay): | |
|
|
726 | """Check if the next file to be readed exists. | |
|
|
727 | ||
|
|
728 | Example : | |
|
|
729 | nombre correcto del file es .../.../D2009307/P2009307367.ext | |
|
|
730 | ||
|
|
731 | Entonces la funcion prueba con las siguientes combinaciones | |
|
|
732 | .../.../y2009307367.ext | |
|
|
733 | .../.../Y2009307367.ext | |
|
|
734 | .../.../x2009307/y2009307367.ext | |
|
|
735 | .../.../x2009307/Y2009307367.ext | |
|
|
736 | .../.../X2009307/y2009307367.ext | |
|
|
737 | .../.../X2009307/Y2009307367.ext | |
|
|
738 | siendo para este caso, la ultima combinacion de letras, identica al file buscado | |
|
|
739 | ||
|
|
740 | Return: | |
|
|
741 | str -- fullpath of the file | |
|
|
742 | """ | |
|
|
743 | ||
|
|
744 | ||
|
|
745 | if nextFile: | |
|
|
746 | self.set += 1 | |
|
|
747 | if nextDay: | |
|
|
748 | self.set = 0 | |
|
|
749 | self.doy += 1 | |
|
|
750 | foldercounter = 0 | |
|
|
751 | prefixDirList = [None, 'd', 'D'] | |
|
|
752 | if self.ext.lower() == ".r": # voltage | |
|
|
753 | prefixFileList = ['d', 'D'] | |
|
|
754 | elif self.ext.lower() == ".pdata": # spectra | |
|
|
755 | prefixFileList = ['p', 'P'] | |
|
|
756 | ||
|
|
757 | # barrido por las combinaciones posibles | |
|
|
758 | for prefixDir in prefixDirList: | |
|
|
759 | thispath = self.path | |
|
|
760 | if prefixDir != None: | |
|
|
761 | # formo el nombre del directorio xYYYYDDD (x=d o x=D) | |
|
|
762 | if foldercounter == 0: | |
|
|
763 | thispath = os.path.join(self.path, "%s%04d%03d" % | |
|
|
764 | (prefixDir, self.year, self.doy)) | |
|
|
765 | else: | |
|
|
766 | thispath = os.path.join(self.path, "%s%04d%03d_%02d" % ( | |
|
|
767 | prefixDir, self.year, self.doy, foldercounter)) | |
|
|
768 | for prefixFile in prefixFileList: # barrido por las dos combinaciones posibles de "D" | |
|
|
769 | # formo el nombre del file xYYYYDDDSSS.ext | |
|
|
770 | filename = "%s%04d%03d%03d%s" % (prefixFile, self.year, self.doy, self.set, self.ext) | |
|
|
771 | fullfilename = os.path.join( | |
|
|
772 | thispath, filename) | |
|
|
773 | ||
|
|
774 | if os.path.exists(fullfilename): | |
|
|
775 | return fullfilename, filename | |
|
|
776 | ||
|
|
777 | return None, filename | |
|
|
778 | ||
|
|
910 | 779 | def __waitNewBlock(self): |
|
|
911 | 780 | """ |
|
|
912 | 781 | Return 1 si se encontro un nuevo bloque de datos, 0 de otra forma. |
|
|
913 | 782 | |
|
|
914 | 783 | Si el modo de lectura es OffLine siempre retorn 0 |
|
|
915 | 784 | """ |
|
|
916 | 785 | if not self.online: |
|
|
917 | 786 | return 0 |
|
|
918 | 787 | |
|
|
919 | 788 | if (self.nReadBlocks >= self.processingHeaderObj.dataBlocksPerFile): |
|
|
920 | 789 | return 0 |
|
|
921 | 790 | |
|
|
922 | 791 | currentPointer = self.fp.tell() |
|
|
923 | 792 | |
|
|
924 | 793 | neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize |
|
|
925 | 794 | |
|
|
926 | 795 | for nTries in range(self.nTries): |
|
|
927 | 796 | |
|
|
928 | 797 | self.fp.close() |
|
|
929 | 798 | self.fp = open(self.filename, 'rb') |
|
|
930 | 799 | self.fp.seek(currentPointer) |
|
|
931 | 800 | |
|
|
932 | 801 | self.fileSize = os.path.getsize(self.filename) |
|
|
933 | 802 | currentSize = self.fileSize - currentPointer |
|
|
934 | 803 | |
|
|
935 | 804 | if (currentSize >= neededSize): |
|
|
936 | 805 | self.basicHeaderObj.read(self.fp) |
|
|
937 | 806 | return 1 |
|
|
938 | 807 | |
|
|
939 | 808 | if self.fileSize == self.fileSizeByHeader: |
|
|
940 | 809 | # self.flagEoF = True |
|
|
941 | 810 | return 0 |
|
|
942 | 811 | |
|
|
943 | 812 | print("[Reading] Waiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries + 1)) |
|
|
944 | 813 | time.sleep(self.delay) |
|
|
945 | 814 | |
|
|
946 | 815 | return 0 |
|
|
947 | 816 | |
|
|
948 | 817 | def waitDataBlock(self, pointer_location, blocksize=None): |
|
|
949 | 818 | |
|
|
950 | 819 | currentPointer = pointer_location |
|
|
951 | 820 | if blocksize is None: |
|
|
952 | 821 | neededSize = self.processingHeaderObj.blockSize # + self.basicHeaderSize |
|
|
953 | 822 | else: |
|
|
954 | 823 | neededSize = blocksize |
|
|
955 | 824 | |
|
|
956 | 825 | for nTries in range(self.nTries): |
|
|
957 | 826 | self.fp.close() |
|
|
958 | 827 | self.fp = open(self.filename, 'rb') |
|
|
959 | 828 | self.fp.seek(currentPointer) |
|
|
960 | 829 | |
|
|
961 | 830 | self.fileSize = os.path.getsize(self.filename) |
|
|
962 | 831 | currentSize = self.fileSize - currentPointer |
|
|
963 | 832 | |
|
|
964 | 833 | if (currentSize >= neededSize): |
|
|
965 | 834 | return 1 |
|
|
966 | 835 | |
|
|
967 | 836 | log.warning( |
|
|
968 | 837 | "Waiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries + 1), |
|
|
969 | 838 | self.name |
|
|
970 | 839 | ) |
|
|
971 | 840 | time.sleep(self.delay) |
|
|
972 | 841 | |
|
|
973 | 842 | return 0 |
|
|
974 | 843 | |
|
|
975 | def __jumpToLastBlock(self): | |
|
|
976 | ||
|
|
977 | if not(self.__isFirstTimeOnline): | |
|
|
978 | return | |
|
|
979 | ||
|
|
980 | csize = self.fileSize - self.fp.tell() | |
|
|
981 | blocksize = self.processingHeaderObj.blockSize | |
|
|
982 | ||
|
|
983 | # salta el primer bloque de datos | |
|
|
984 | if csize > self.processingHeaderObj.blockSize: | |
|
|
985 | self.fp.seek(self.fp.tell() + blocksize) | |
|
|
986 | else: | |
|
|
987 | return | |
|
|
988 | ||
|
|
989 | csize = self.fileSize - self.fp.tell() | |
|
|
990 | neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize | |
|
|
991 | while True: | |
|
|
992 | ||
|
|
993 | if self.fp.tell() < self.fileSize: | |
|
|
994 | self.fp.seek(self.fp.tell() + neededsize) | |
|
|
995 | else: | |
|
|
996 | self.fp.seek(self.fp.tell() - neededsize) | |
|
|
997 | break | |
|
|
998 | ||
|
|
999 | # csize = self.fileSize - self.fp.tell() | |
|
|
1000 | # neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize | |
|
|
1001 | # factor = int(csize/neededsize) | |
|
|
1002 | # if factor > 0: | |
|
|
1003 | # self.fp.seek(self.fp.tell() + factor*neededsize) | |
|
|
1004 | ||
|
|
1005 | self.flagIsNewFile = 0 | |
|
|
1006 | self.__isFirstTimeOnline = 0 | |
|
|
1007 | ||
|
|
1008 | 844 | def __setNewBlock(self): |
|
|
1009 | # if self.server is None: | |
|
|
1010 | if self.fp == None: | |
|
|
1011 | return 0 | |
|
|
1012 | 845 | |
|
|
1013 |
|
|
|
|
1014 | # self.__jumpToLastBlock() | |
|
|
846 | if self.fp == None: | |
|
|
847 | return 0 | |
|
|
1015 | 848 | |
|
|
1016 | if self.flagIsNewFile: | |
|
|
849 | if self.flagIsNewFile: | |
|
|
1017 | 850 | self.lastUTTime = self.basicHeaderObj.utc |
|
|
1018 | 851 | return 1 |
|
|
1019 | 852 | |
|
|
1020 | 853 | if self.realtime: |
|
|
1021 | 854 | self.flagDiscontinuousBlock = 1 |
|
|
1022 | 855 | if not(self.setNextFile()): |
|
|
1023 | 856 | return 0 |
|
|
1024 | 857 | else: |
|
|
1025 | 858 | return 1 |
|
|
1026 | # if self.server is None: | |
|
|
859 | ||
|
|
1027 | 860 | currentSize = self.fileSize - self.fp.tell() |
|
|
1028 | 861 | neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize |
|
|
862 | ||
|
|
1029 | 863 | if (currentSize >= neededSize): |
|
|
1030 | 864 | self.basicHeaderObj.read(self.fp) |
|
|
1031 | 865 | self.lastUTTime = self.basicHeaderObj.utc |
|
|
1032 | 866 | return 1 |
|
|
1033 |
|
|
|
|
1034 | # self.basicHeaderObj.read(self.zHeader) | |
|
|
1035 | # self.lastUTTime = self.basicHeaderObj.utc | |
|
|
1036 | # return 1 | |
|
|
867 | ||
|
|
1037 | 868 | if self.__waitNewBlock(): |
|
|
1038 | 869 | self.lastUTTime = self.basicHeaderObj.utc |
|
|
1039 | 870 | return 1 |
|
|
1040 | # if self.server is None: | |
|
|
871 | ||
|
|
1041 | 872 | if not(self.setNextFile()): |
|
|
1042 | 873 | return 0 |
|
|
1043 | 874 | |
|
|
1044 | 875 | deltaTime = self.basicHeaderObj.utc - self.lastUTTime |
|
|
1045 | 876 | self.lastUTTime = self.basicHeaderObj.utc |
|
|
1046 | 877 | |
|
|
1047 | 878 | self.flagDiscontinuousBlock = 0 |
|
|
1048 | 879 | |
|
|
1049 | 880 | if deltaTime > self.maxTimeStep: |
|
|
1050 | 881 | self.flagDiscontinuousBlock = 1 |
|
|
1051 | 882 | |
|
|
1052 | 883 | return 1 |
|
|
1053 | 884 | |
|
|
1054 | 885 | def readNextBlock(self): |
|
|
1055 | 886 | |
|
|
1056 | # Skip block out of startTime and endTime | |
|
|
1057 | 887 | while True: |
|
|
1058 |
|
|
|
|
1059 | raise schainpy.admin.SchainWarning('No more files to read') | |
|
|
888 | self.__setNewBlock() | |
|
|
1060 | 889 | |
|
|
1061 | 890 | if not(self.readBlock()): |
|
|
1062 | 891 | return 0 |
|
|
1063 | 892 | |
|
|
1064 | 893 | self.getBasicHeader() |
|
|
1065 | 894 | if (self.dataOut.datatime < datetime.datetime.combine(self.startDate, self.startTime)) or (self.dataOut.datatime > datetime.datetime.combine(self.endDate, self.endTime)): |
|
|
1066 | 895 | print("[Reading] Block No. %d/%d -> %s [Skipping]" % (self.nReadBlocks, |
|
|
1067 | 896 | self.processingHeaderObj.dataBlocksPerFile, |
|
|
1068 | 897 | self.dataOut.datatime.ctime())) |
|
|
1069 | 898 | continue |
|
|
1070 | 899 | |
|
|
1071 | 900 | break |
|
|
1072 | 901 | |
|
|
1073 | 902 | if self.verbose: |
|
|
1074 | 903 | print("[Reading] Block No. %d/%d -> %s" % (self.nReadBlocks, |
|
|
1075 | 904 | self.processingHeaderObj.dataBlocksPerFile, |
|
|
1076 | 905 | self.dataOut.datatime.ctime())) |
|
|
1077 | 906 | return 1 |
|
|
1078 | 907 | |
|
|
1079 |
def |
|
|
|
908 | def readFirstHeader(self): | |
|
|
1080 | 909 | |
|
|
1081 | 910 | self.basicHeaderObj.read(self.fp) |
|
|
1082 | 911 | self.systemHeaderObj.read(self.fp) |
|
|
1083 | 912 | self.radarControllerHeaderObj.read(self.fp) |
|
|
1084 | 913 | self.processingHeaderObj.read(self.fp) |
|
|
1085 | ||
|
|
1086 | 914 | self.firstHeaderSize = self.basicHeaderObj.size |
|
|
1087 | 915 | |
|
|
1088 | 916 | datatype = int(numpy.log2((self.processingHeaderObj.processFlags & |
|
|
1089 | 917 | PROCFLAG.DATATYPE_MASK)) - numpy.log2(PROCFLAG.DATATYPE_CHAR)) |
|
|
1090 | 918 | if datatype == 0: |
|
|
1091 | 919 | datatype_str = numpy.dtype([('real', '<i1'), ('imag', '<i1')]) |
|
|
1092 | 920 | elif datatype == 1: |
|
|
1093 | 921 | datatype_str = numpy.dtype([('real', '<i2'), ('imag', '<i2')]) |
|
|
1094 | 922 | elif datatype == 2: |
|
|
1095 | 923 | datatype_str = numpy.dtype([('real', '<i4'), ('imag', '<i4')]) |
|
|
1096 | 924 | elif datatype == 3: |
|
|
1097 | 925 | datatype_str = numpy.dtype([('real', '<i8'), ('imag', '<i8')]) |
|
|
1098 | 926 | elif datatype == 4: |
|
|
1099 | 927 | datatype_str = numpy.dtype([('real', '<f4'), ('imag', '<f4')]) |
|
|
1100 | 928 | elif datatype == 5: |
|
|
1101 | 929 | datatype_str = numpy.dtype([('real', '<f8'), ('imag', '<f8')]) |
|
|
1102 | 930 | else: |
|
|
1103 | 931 | raise ValueError('Data type was not defined') |
|
|
1104 | 932 | |
|
|
1105 | 933 | self.dtype = datatype_str |
|
|
1106 | 934 | #self.ippSeconds = 2 * 1000 * self.radarControllerHeaderObj.ipp / self.c |
|
|
1107 | 935 | self.fileSizeByHeader = self.processingHeaderObj.dataBlocksPerFile * self.processingHeaderObj.blockSize + \ |
|
|
1108 | 936 | self.firstHeaderSize + self.basicHeaderSize * \ |
|
|
1109 | 937 | (self.processingHeaderObj.dataBlocksPerFile - 1) |
|
|
1110 | 938 | # self.dataOut.channelList = numpy.arange(self.systemHeaderObj.numChannels) |
|
|
1111 | 939 | # self.dataOut.channelIndexList = numpy.arange(self.systemHeaderObj.numChannels) |
|
|
1112 | 940 | self.getBlockDimension() |
|
|
1113 | 941 | |
|
|
1114 |
def |
|
|
|
942 | def verifyFile(self, filename, msgFlag=True): | |
|
|
1115 | 943 | |
|
|
1116 | 944 | msg = None |
|
|
1117 | 945 | |
|
|
1118 | 946 | try: |
|
|
1119 | 947 | fp = open(filename, 'rb') |
|
|
1120 | 948 | except IOError: |
|
|
1121 | 949 | |
|
|
1122 | 950 | if msgFlag: |
|
|
1123 | 951 | print("[Reading] File %s can't be opened" % (filename)) |
|
|
1124 | 952 | |
|
|
1125 | 953 | return False |
|
|
1126 | 954 | |
|
|
1127 | 955 | currentPosition = fp.tell() |
|
|
1128 | 956 | neededSize = self.processingHeaderObj.blockSize + self.firstHeaderSize |
|
|
1129 | 957 | |
|
|
1130 | 958 | if neededSize == 0: |
|
|
1131 | 959 | basicHeaderObj = BasicHeader(LOCALTIME) |
|
|
1132 | 960 | systemHeaderObj = SystemHeader() |
|
|
1133 | 961 | radarControllerHeaderObj = RadarControllerHeader() |
|
|
1134 | 962 | processingHeaderObj = ProcessingHeader() |
|
|
1135 | 963 | |
|
|
1136 | 964 | if not(basicHeaderObj.read(fp)): |
|
|
1137 | 965 | fp.close() |
|
|
1138 | 966 | return False |
|
|
1139 | 967 | |
|
|
1140 | 968 | if not(systemHeaderObj.read(fp)): |
|
|
1141 | 969 | fp.close() |
|
|
1142 | 970 | return False |
|
|
1143 | 971 | |
|
|
1144 | 972 | if not(radarControllerHeaderObj.read(fp)): |
|
|
1145 | 973 | fp.close() |
|
|
1146 | 974 | return False |
|
|
1147 | 975 | |
|
|
1148 | 976 | if not(processingHeaderObj.read(fp)): |
|
|
1149 | 977 | fp.close() |
|
|
1150 | 978 | return False |
|
|
1151 | 979 | |
|
|
1152 | 980 | neededSize = processingHeaderObj.blockSize + basicHeaderObj.size |
|
|
1153 | 981 | else: |
|
|
1154 | 982 | msg = "[Reading] Skipping the file %s due to it hasn't enough data" % filename |
|
|
1155 | 983 | |
|
|
1156 | 984 | fp.close() |
|
|
1157 | 985 | |
|
|
1158 | 986 | fileSize = os.path.getsize(filename) |
|
|
1159 | 987 | currentSize = fileSize - currentPosition |
|
|
1160 | 988 | |
|
|
1161 | 989 | if currentSize < neededSize: |
|
|
1162 | 990 | if msgFlag and (msg != None): |
|
|
1163 | 991 | print(msg) |
|
|
1164 | 992 | return False |
|
|
1165 | 993 | |
|
|
1166 | 994 | return True |
|
|
1167 | 995 | |
|
|
1168 | 996 | def findDatafiles(self, path, startDate=None, endDate=None, expLabel='', ext='.r', walk=True, include_path=False): |
|
|
1169 | 997 | |
|
|
1170 | 998 | path_empty = True |
|
|
1171 | 999 | |
|
|
1172 | 1000 | dateList = [] |
|
|
1173 | 1001 | pathList = [] |
|
|
1174 | 1002 | |
|
|
1175 | 1003 | multi_path = path.split(',') |
|
|
1176 | 1004 | |
|
|
1177 | 1005 | if not walk: |
|
|
1178 | 1006 | |
|
|
1179 | 1007 | for single_path in multi_path: |
|
|
1180 | 1008 | |
|
|
1181 | 1009 | if not os.path.isdir(single_path): |
|
|
1182 | 1010 | continue |
|
|
1183 | 1011 | |
|
|
1184 | 1012 | fileList = glob.glob1(single_path, "*" + ext) |
|
|
1185 | 1013 | |
|
|
1186 | 1014 | if not fileList: |
|
|
1187 | 1015 | continue |
|
|
1188 | 1016 | |
|
|
1189 | 1017 | path_empty = False |
|
|
1190 | 1018 | |
|
|
1191 | 1019 | fileList.sort() |
|
|
1192 | 1020 | |
|
|
1193 | 1021 | for thisFile in fileList: |
|
|
1194 | 1022 | |
|
|
1195 | 1023 | if not os.path.isfile(os.path.join(single_path, thisFile)): |
|
|
1196 | 1024 | continue |
|
|
1197 | 1025 | |
|
|
1198 | 1026 | if not isRadarFile(thisFile): |
|
|
1199 | 1027 | continue |
|
|
1200 | 1028 | |
|
|
1201 | 1029 | if not isFileInDateRange(thisFile, startDate, endDate): |
|
|
1202 | 1030 | continue |
|
|
1203 | 1031 | |
|
|
1204 | 1032 | thisDate = getDateFromRadarFile(thisFile) |
|
|
1205 | 1033 | |
|
|
1206 | 1034 | if thisDate in dateList or single_path in pathList: |
|
|
1207 | 1035 | continue |
|
|
1208 | 1036 | |
|
|
1209 | 1037 | dateList.append(thisDate) |
|
|
1210 | 1038 | pathList.append(single_path) |
|
|
1211 | 1039 | |
|
|
1212 | 1040 | else: |
|
|
1213 | 1041 | for single_path in multi_path: |
|
|
1214 | 1042 | |
|
|
1215 | 1043 | if not os.path.isdir(single_path): |
|
|
1216 | 1044 | continue |
|
|
1217 | 1045 | |
|
|
1218 | 1046 | dirList = [] |
|
|
1219 | 1047 | |
|
|
1220 | 1048 | for thisPath in os.listdir(single_path): |
|
|
1221 | 1049 | |
|
|
1222 | 1050 | if not os.path.isdir(os.path.join(single_path, thisPath)): |
|
|
1223 | 1051 | continue |
|
|
1224 | 1052 | |
|
|
1225 | 1053 | if not isRadarFolder(thisPath): |
|
|
1226 | 1054 | continue |
|
|
1227 | 1055 | |
|
|
1228 | 1056 | if not isFolderInDateRange(thisPath, startDate, endDate): |
|
|
1229 | 1057 | continue |
|
|
1230 | 1058 | |
|
|
1231 | 1059 | dirList.append(thisPath) |
|
|
1232 | 1060 | |
|
|
1233 | 1061 | if not dirList: |
|
|
1234 | 1062 | continue |
|
|
1235 | 1063 | |
|
|
1236 | 1064 | dirList.sort() |
|
|
1237 | 1065 | |
|
|
1238 | 1066 | for thisDir in dirList: |
|
|
1239 | 1067 | |
|
|
1240 | 1068 | datapath = os.path.join(single_path, thisDir, expLabel) |
|
|
1241 | 1069 | fileList = glob.glob1(datapath, "*" + ext) |
|
|
1242 | 1070 | |
|
|
1243 | 1071 | if not fileList: |
|
|
1244 | 1072 | continue |
|
|
1245 | 1073 | |
|
|
1246 | 1074 | path_empty = False |
|
|
1247 | 1075 | |
|
|
1248 | 1076 | thisDate = getDateFromRadarFolder(thisDir) |
|
|
1249 | 1077 | |
|
|
1250 | 1078 | pathList.append(datapath) |
|
|
1251 | 1079 | dateList.append(thisDate) |
|
|
1252 | 1080 | |
|
|
1253 | 1081 | dateList.sort() |
|
|
1254 | 1082 | |
|
|
1255 | 1083 | if walk: |
|
|
1256 | 1084 | pattern_path = os.path.join(multi_path[0], "[dYYYYDDD]", expLabel) |
|
|
1257 | 1085 | else: |
|
|
1258 | 1086 | pattern_path = multi_path[0] |
|
|
1259 | 1087 | |
|
|
1260 | 1088 | if path_empty: |
|
|
1261 | 1089 | raise schainpy.admin.SchainError("[Reading] No *%s files in %s for %s to %s" % (ext, pattern_path, startDate, endDate)) |
|
|
1262 | 1090 | else: |
|
|
1263 | 1091 | if not dateList: |
|
|
1264 | 1092 | raise schainpy.admin.SchainError("[Reading] Date range selected invalid [%s - %s]: No *%s files in %s)" % (startDate, endDate, ext, path)) |
|
|
1265 | 1093 | |
|
|
1266 | 1094 | if include_path: |
|
|
1267 | 1095 | return dateList, pathList |
|
|
1268 | 1096 | |
|
|
1269 | 1097 | return dateList |
|
|
1270 | 1098 | |
|
|
1271 | def setup(self, | |
|
|
1272 | path=None, | |
|
|
1273 | startDate=None, | |
|
|
1274 | endDate=None, | |
|
|
1275 | startTime=datetime.time(0, 0, 0), | |
|
|
1276 | endTime=datetime.time(23, 59, 59), | |
|
|
1277 | set=None, | |
|
|
1278 | expLabel="", | |
|
|
1279 | ext=None, | |
|
|
1280 | online=False, | |
|
|
1281 | delay=60, | |
|
|
1282 | walk=True, | |
|
|
1283 | getblock=False, | |
|
|
1284 | nTxs=1, | |
|
|
1285 | realtime=False, | |
|
|
1286 | blocksize=None, | |
|
|
1287 | blocktime=None, | |
|
|
1288 | skip=None, | |
|
|
1289 | cursor=None, | |
|
|
1290 | warnings=True, | |
|
|
1291 | verbose=True, | |
|
|
1292 | server=None, | |
|
|
1293 | format=None, | |
|
|
1294 | oneDDict=None, | |
|
|
1295 | twoDDict=None, | |
|
|
1296 | independentParam=None): | |
|
|
1099 | def setup(self, **kwargs): | |
|
|
1100 | ||
|
|
1101 | self.set_kwargs(**kwargs) | |
|
|
1102 | if not self.ext.startswith('.'): | |
|
|
1103 | self.ext = '.{}'.format(self.ext) | |
|
|
1297 | 1104 | |
|
|
1298 | self.online = online | |
|
|
1299 | self.realtime = realtime | |
|
|
1300 | self.delay = delay | |
|
|
1301 | self.getByBlock = getblock | |
|
|
1302 | self.nTxs = nTxs | |
|
|
1303 | self.startTime = startTime | |
|
|
1304 | self.endTime = endTime | |
|
|
1305 | self.endDate = endDate | |
|
|
1306 | self.startDate = startDate | |
|
|
1307 | ||
|
|
1308 | if server is not None: | |
|
|
1309 | if 'tcp://' in server: | |
|
|
1105 | if self.server is not None: | |
|
|
1106 | if 'tcp://' in self.server: | |
|
|
1310 | 1107 | address = server |
|
|
1311 | 1108 | else: |
|
|
1312 | address = 'ipc:///tmp/%s' % server | |
|
|
1109 | address = 'ipc:///tmp/%s' % self.server | |
|
|
1313 | 1110 | self.server = address |
|
|
1314 | 1111 | self.context = zmq.Context() |
|
|
1315 | 1112 | self.receiver = self.context.socket(zmq.PULL) |
|
|
1316 | 1113 | self.receiver.connect(self.server) |
|
|
1317 | 1114 | time.sleep(0.5) |
|
|
1318 | 1115 | print('[Starting] ReceiverData from {}'.format(self.server)) |
|
|
1319 | 1116 | else: |
|
|
1320 | 1117 | self.server = None |
|
|
1321 | if path == None: | |
|
|
1118 | if self.path == None: | |
|
|
1322 | 1119 | raise ValueError("[Reading] The path is not valid") |
|
|
1323 | 1120 | |
|
|
1324 |
if |
|
|
|
1325 | ext = self.ext | |
|
|
1326 | ||
|
|
1327 | if online: | |
|
|
1328 | print("[Reading] Searching files in online mode...") | |
|
|
1121 | if self.online: | |
|
|
1122 | log.log("[Reading] Searching files in online mode...", self.name) | |
|
|
1329 | 1123 | |
|
|
1330 | 1124 | for nTries in range(self.nTries): |
|
|
1331 |
fullpath |
|
|
|
1332 |
|
|
|
|
1333 | ||
|
|
1125 | fullpath = self.searchFilesOnLine(self.path, self.startDate, | |
|
|
1126 | self.endDate, self.expLabel, self.ext, self.walk, | |
|
|
1127 | self.filefmt, self.folderfmt) | |
|
|
1128 | ||
|
|
1129 | try: | |
|
|
1130 | fullpath = next(fullpath) | |
|
|
1131 | except: | |
|
|
1132 | fullpath = None | |
|
|
1133 | ||
|
|
1334 | 1134 | if fullpath: |
|
|
1335 | 1135 | break |
|
|
1336 | 1136 | |
|
|
1337 | print('[Reading] Waiting %0.2f sec for an valid file in %s: try %02d ...' % (self.delay, path, nTries + 1)) | |
|
|
1137 | log.warning( | |
|
|
1138 | 'Waiting {} sec for a valid file in {}: try {} ...'.format( | |
|
|
1139 | self.delay, self.path, nTries + 1), | |
|
|
1140 | self.name) | |
|
|
1338 | 1141 | time.sleep(self.delay) |
|
|
1339 | 1142 | |
|
|
1340 | 1143 | if not(fullpath): |
|
|
1341 |
raise schainpy.admin.SchainError( |
|
|
|
1342 | return | |
|
|
1343 | ||
|
|
1344 | self.year = year | |
|
|
1345 | self.doy = doy | |
|
|
1346 | self.set = set - 1 | |
|
|
1347 | self.path = path | |
|
|
1348 | self.foldercounter = foldercounter | |
|
|
1349 | last_set = None | |
|
|
1350 | else: | |
|
|
1351 | print("[Reading] Searching files in offline mode ...") | |
|
|
1352 | pathList, filenameList = self.searchFilesOffLine(path, startDate=startDate, endDate=endDate, | |
|
|
1353 | startTime=startTime, endTime=endTime, | |
|
|
1354 | set=set, expLabel=expLabel, ext=ext, | |
|
|
1355 | walk=walk, cursor=cursor, | |
|
|
1356 | skip=skip) | |
|
|
1357 | ||
|
|
1358 | if not(pathList): | |
|
|
1359 | self.fileIndex = -1 | |
|
|
1360 | self.pathList = [] | |
|
|
1361 | self.filenameList = [] | |
|
|
1362 | return | |
|
|
1363 | ||
|
|
1364 | self.fileIndex = -1 | |
|
|
1365 | self.pathList = pathList | |
|
|
1366 | self.filenameList = filenameList | |
|
|
1367 | file_name = os.path.basename(filenameList[-1]) | |
|
|
1368 | basename, ext = os.path.splitext(file_name) | |
|
|
1369 | last_set = int(basename[-3:]) | |
|
|
1144 | raise schainpy.admin.SchainError( | |
|
|
1145 | 'There isn\'t any valid file in {}'.format(self.path)) | |
|
|
1370 | 1146 | |
|
|
1147 | pathname, filename = os.path.split(fullpath) | |
|
|
1148 | self.year = int(filename[1:5]) | |
|
|
1149 | self.doy = int(filename[5:8]) | |
|
|
1150 | self.set = int(filename[8:11]) - 1 | |
|
|
1151 | else: | |
|
|
1152 | log.log("Searching files in {}".format(self.path), self.name) | |
|
|
1153 | self.filenameList = self.searchFilesOffLine(self.path, self.startDate, | |
|
|
1154 | self.endDate, self.expLabel, self.ext, self.walk, self.filefmt, self.folderfmt) | |
|
|
1371 | 1155 | |
|
|
1372 |
|
|
|
|
1373 | self.ext = ext | |
|
|
1374 | ||
|
|
1375 | # Added----------------- | |
|
|
1376 | self.selBlocksize = blocksize | |
|
|
1377 | self.selBlocktime = blocktime | |
|
|
1378 | ||
|
|
1379 | # Verbose----------- | |
|
|
1380 | self.verbose = verbose | |
|
|
1381 | self.warnings = warnings | |
|
|
1382 | ||
|
|
1383 | if not(self.setNextFile()): | |
|
|
1384 | if (startDate != None) and (endDate != None): | |
|
|
1385 | print("[Reading] No files in range: %s - %s" % (datetime.datetime.combine(startDate, startTime).ctime(), datetime.datetime.combine(endDate, endTime).ctime())) | |
|
|
1386 | elif startDate != None: | |
|
|
1387 | print("[Reading] No files in range: %s" % (datetime.datetime.combine(startDate, startTime).ctime())) | |
|
|
1388 | else: | |
|
|
1389 | print("[Reading] No files") | |
|
|
1390 | ||
|
|
1391 | self.fileIndex = -1 | |
|
|
1392 | self.pathList = [] | |
|
|
1393 | self.filenameList = [] | |
|
|
1394 | return | |
|
|
1156 | self.setNextFile() | |
|
|
1395 | 1157 | |
|
|
1396 | if last_set != None: | |
|
|
1397 | self.dataOut.last_block = last_set * \ | |
|
|
1398 | self.processingHeaderObj.dataBlocksPerFile + self.basicHeaderObj.dataBlock | |
|
|
1399 | 1158 | return |
|
|
1400 | 1159 | |
|
|
1401 | 1160 | def getBasicHeader(self): |
|
|
1402 | 1161 | |
|
|
1403 | 1162 | self.dataOut.utctime = self.basicHeaderObj.utc + self.basicHeaderObj.miliSecond / \ |
|
|
1404 | 1163 | 1000. + self.profileIndex * self.radarControllerHeaderObj.ippSeconds |
|
|
1405 | 1164 | |
|
|
1406 | 1165 | self.dataOut.flagDiscontinuousBlock = self.flagDiscontinuousBlock |
|
|
1407 | 1166 | |
|
|
1408 | 1167 | self.dataOut.timeZone = self.basicHeaderObj.timeZone |
|
|
1409 | 1168 | |
|
|
1410 | 1169 | self.dataOut.dstFlag = self.basicHeaderObj.dstFlag |
|
|
1411 | 1170 | |
|
|
1412 | 1171 | self.dataOut.errorCount = self.basicHeaderObj.errorCount |
|
|
1413 | 1172 | |
|
|
1414 | 1173 | self.dataOut.useLocalTime = self.basicHeaderObj.useLocalTime |
|
|
1415 | 1174 | |
|
|
1416 | 1175 | self.dataOut.ippSeconds = self.radarControllerHeaderObj.ippSeconds / self.nTxs |
|
|
1417 | 1176 | |
|
|
1418 | # self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock*self.nTxs | |
|
|
1177 | # self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock*self.nTxs | |
|
|
1419 | 1178 | |
|
|
1420 | 1179 | def getFirstHeader(self): |
|
|
1421 | 1180 | |
|
|
1422 | 1181 | raise NotImplementedError |
|
|
1423 | 1182 | |
|
|
1424 | 1183 | def getData(self): |
|
|
1425 | 1184 | |
|
|
1426 | 1185 | raise NotImplementedError |
|
|
1427 | 1186 | |
|
|
1428 | 1187 | def hasNotDataInBuffer(self): |
|
|
1429 | 1188 | |
|
|
1430 | 1189 | raise NotImplementedError |
|
|
1431 | 1190 | |
|
|
1432 | 1191 | def readBlock(self): |
|
|
1433 | 1192 | |
|
|
1434 | 1193 | raise NotImplementedError |
|
|
1435 | 1194 | |
|
|
1436 | 1195 | def isEndProcess(self): |
|
|
1437 | 1196 | |
|
|
1438 | 1197 | return self.flagNoMoreFiles |
|
|
1439 | 1198 | |
|
|
1440 | 1199 | def printReadBlocks(self): |
|
|
1441 | 1200 | |
|
|
1442 | 1201 | print("[Reading] Number of read blocks per file %04d" % self.nReadBlocks) |
|
|
1443 | 1202 | |
|
|
1444 | 1203 | def printTotalBlocks(self): |
|
|
1445 | 1204 | |
|
|
1446 | 1205 | print("[Reading] Number of read blocks %04d" % self.nTotalBlocks) |
|
|
1447 | 1206 | |
|
|
1448 | 1207 | def printNumberOfBlock(self): |
|
|
1449 | 1208 | 'SPAM!' |
|
|
1450 | 1209 | |
|
|
1451 | # if self.flagIsNewBlock: | |
|
|
1452 | # print "[Reading] Block No. %d/%d -> %s" %(self.nReadBlocks, | |
|
|
1453 | # self.processingHeaderObj.dataBlocksPerFile, | |
|
|
1454 | # self.dataOut.datatime.ctime()) | |
|
|
1210 | # if self.flagIsNewBlock: | |
|
|
1211 | # print "[Reading] Block No. %d/%d -> %s" %(self.nReadBlocks, | |
|
|
1212 | # self.processingHeaderObj.dataBlocksPerFile, | |
|
|
1213 | # self.dataOut.datatime.ctime()) | |
|
|
1455 | 1214 | |
|
|
1456 | 1215 | def printInfo(self): |
|
|
1457 | 1216 | |
|
|
1458 | 1217 | if self.__printInfo == False: |
|
|
1459 | 1218 | return |
|
|
1460 | 1219 | |
|
|
1461 | 1220 | self.basicHeaderObj.printInfo() |
|
|
1462 | 1221 | self.systemHeaderObj.printInfo() |
|
|
1463 | 1222 | self.radarControllerHeaderObj.printInfo() |
|
|
1464 | 1223 | self.processingHeaderObj.printInfo() |
|
|
1465 | 1224 | |
|
|
1466 | 1225 | self.__printInfo = False |
|
|
1467 | 1226 | |
|
|
1468 | def run(self, | |
|
|
1469 | path=None, | |
|
|
1470 | startDate=None, | |
|
|
1471 | endDate=None, | |
|
|
1472 | startTime=datetime.time(0, 0, 0), | |
|
|
1473 | endTime=datetime.time(23, 59, 59), | |
|
|
1474 |
|
|
|
|
1475 | expLabel="", | |
|
|
1476 |
e |
|
|
|
1477 | online=False, | |
|
|
1478 |
|
|
|
|
1479 | walk=True, | |
|
|
1480 | getblock=False, | |
|
|
1481 | nTxs=1, | |
|
|
1482 | realtime=False, | |
|
|
1483 |
|
|
|
|
1484 | blocktime=None, | |
|
|
1485 | skip=None, | |
|
|
1486 |
|
|
|
|
1487 | warnings=True, | |
|
|
1488 | server=None, | |
|
|
1489 |
|
|
|
|
1490 | format=None, | |
|
|
1491 | oneDDict=None, | |
|
|
1492 | twoDDict=None, | |
|
|
1493 | independentParam=None, **kwargs): | |
|
|
1227 | def run(self, **kwargs): | |
|
|
1228 | """ | |
|
|
1229 | ||
|
|
1230 | Arguments: | |
|
|
1231 | path : | |
|
|
1232 | startDate : | |
|
|
1233 | endDate : | |
|
|
1234 | startTime : | |
|
|
1235 | endTime : | |
|
|
1236 | set : | |
|
|
1237 | expLabel : | |
|
|
1238 | ext : | |
|
|
1239 | online : | |
|
|
1240 | delay : | |
|
|
1241 | walk : | |
|
|
1242 | getblock : | |
|
|
1243 | nTxs : | |
|
|
1244 | realtime : | |
|
|
1245 | blocksize : | |
|
|
1246 | blocktime : | |
|
|
1247 | skip : | |
|
|
1248 | cursor : | |
|
|
1249 | warnings : | |
|
|
1250 | server : | |
|
|
1251 | verbose : | |
|
|
1252 | format : | |
|
|
1253 | oneDDict : | |
|
|
1254 | twoDDict : | |
|
|
1255 | independentParam : | |
|
|
1256 | """ | |
|
|
1494 | 1257 | |
|
|
1495 | 1258 | if not(self.isConfig): |
|
|
1496 |
self.setup( |
|
|
|
1497 | startDate=startDate, | |
|
|
1498 | endDate=endDate, | |
|
|
1499 | startTime=startTime, | |
|
|
1500 | endTime=endTime, | |
|
|
1501 | set=set, | |
|
|
1502 | expLabel=expLabel, | |
|
|
1503 | ext=ext, | |
|
|
1504 | online=online, | |
|
|
1505 | delay=delay, | |
|
|
1506 | walk=walk, | |
|
|
1507 | getblock=getblock, | |
|
|
1508 | nTxs=nTxs, | |
|
|
1509 | realtime=realtime, | |
|
|
1510 | blocksize=blocksize, | |
|
|
1511 | blocktime=blocktime, | |
|
|
1512 | skip=skip, | |
|
|
1513 | cursor=cursor, | |
|
|
1514 | warnings=warnings, | |
|
|
1515 | server=server, | |
|
|
1516 | verbose=verbose, | |
|
|
1517 | format=format, | |
|
|
1518 | oneDDict=oneDDict, | |
|
|
1519 | twoDDict=twoDDict, | |
|
|
1520 | independentParam=independentParam) | |
|
|
1259 | self.setup(**kwargs) | |
|
|
1521 | 1260 | self.isConfig = True |
|
|
1522 | if server is None: | |
|
|
1261 | if self.server is None: | |
|
|
1523 | 1262 | self.getData() |
|
|
1524 | 1263 | else: |
|
|
1525 | 1264 | self.getFromServer() |
|
|
1526 | 1265 | |
|
|
1527 | 1266 | |
|
|
1528 |
class JRODataWriter( |
|
|
|
1267 | class JRODataWriter(Reader): | |
|
|
1529 | 1268 | |
|
|
1530 | 1269 | """ |
|
|
1531 | 1270 | Esta clase permite escribir datos a archivos procesados (.r o ,pdata). La escritura |
|
|
1532 | 1271 | de los datos siempre se realiza por bloques. |
|
|
1533 | 1272 | """ |
|
|
1534 | 1273 | |
|
|
1535 | blockIndex = 0 | |
|
|
1536 | ||
|
|
1537 | path = None | |
|
|
1538 | ||
|
|
1539 | 1274 | setFile = None |
|
|
1540 | ||
|
|
1541 | 1275 | profilesPerBlock = None |
|
|
1542 | ||
|
|
1543 | 1276 | blocksPerFile = None |
|
|
1544 | ||
|
|
1545 | 1277 | nWriteBlocks = 0 |
|
|
1546 | ||
|
|
1547 | 1278 | fileDate = None |
|
|
1548 | 1279 | |
|
|
1549 | 1280 | def __init__(self, dataOut=None): |
|
|
1550 | 1281 | raise NotImplementedError |
|
|
1551 | 1282 | |
|
|
1552 | 1283 | def hasAllDataInBuffer(self): |
|
|
1553 | 1284 | raise NotImplementedError |
|
|
1554 | 1285 | |
|
|
1555 | 1286 | def setBlockDimension(self): |
|
|
1556 | 1287 | raise NotImplementedError |
|
|
1557 | 1288 | |
|
|
1558 | 1289 | def writeBlock(self): |
|
|
1559 | 1290 | raise NotImplementedError |
|
|
1560 | 1291 | |
|
|
1561 | 1292 | def putData(self): |
|
|
1562 | 1293 | raise NotImplementedError |
|
|
1563 | 1294 | |
|
|
1295 | def getDtypeWidth(self): | |
|
|
1296 | ||
|
|
1297 | dtype_index = get_dtype_index(self.dtype) | |
|
|
1298 | dtype_width = get_dtype_width(dtype_index) | |
|
|
1299 | ||
|
|
1300 | return dtype_width | |
|
|
1301 | ||
|
|
1564 | 1302 | def getProcessFlags(self): |
|
|
1565 | 1303 | |
|
|
1566 | 1304 | processFlags = 0 |
|
|
1567 | 1305 | |
|
|
1568 | 1306 | dtype_index = get_dtype_index(self.dtype) |
|
|
1569 | 1307 | procflag_dtype = get_procflag_dtype(dtype_index) |
|
|
1570 | 1308 | |
|
|
1571 | 1309 | processFlags += procflag_dtype |
|
|
1572 | 1310 | |
|
|
1573 | 1311 | if self.dataOut.flagDecodeData: |
|
|
1574 | 1312 | processFlags += PROCFLAG.DECODE_DATA |
|
|
1575 | 1313 | |
|
|
1576 | 1314 | if self.dataOut.flagDeflipData: |
|
|
1577 | 1315 | processFlags += PROCFLAG.DEFLIP_DATA |
|
|
1578 | 1316 | |
|
|
1579 | 1317 | if self.dataOut.code is not None: |
|
|
1580 | 1318 | processFlags += PROCFLAG.DEFINE_PROCESS_CODE |
|
|
1581 | 1319 | |
|
|
1582 | 1320 | if self.dataOut.nCohInt > 1: |
|
|
1583 | 1321 | processFlags += PROCFLAG.COHERENT_INTEGRATION |
|
|
1584 | 1322 | |
|
|
1585 | 1323 | if self.dataOut.type == "Spectra": |
|
|
1586 | 1324 | if self.dataOut.nIncohInt > 1: |
|
|
1587 | 1325 | processFlags += PROCFLAG.INCOHERENT_INTEGRATION |
|
|
1588 | 1326 | |
|
|
1589 | 1327 | if self.dataOut.data_dc is not None: |
|
|
1590 | 1328 | processFlags += PROCFLAG.SAVE_CHANNELS_DC |
|
|
1591 | 1329 | |
|
|
1592 | 1330 | if self.dataOut.flagShiftFFT: |
|
|
1593 | 1331 | processFlags += PROCFLAG.SHIFT_FFT_DATA |
|
|
1594 | 1332 | |
|
|
1595 | 1333 | return processFlags |
|
|
1596 | 1334 | |
|
|
1597 | 1335 | def setBasicHeader(self): |
|
|
1598 | 1336 | |
|
|
1599 | 1337 | self.basicHeaderObj.size = self.basicHeaderSize # bytes |
|
|
1600 | 1338 | self.basicHeaderObj.version = self.versionFile |
|
|
1601 | 1339 | self.basicHeaderObj.dataBlock = self.nTotalBlocks |
|
|
1602 | 1340 | utc = numpy.floor(self.dataOut.utctime) |
|
|
1603 | 1341 | milisecond = (self.dataOut.utctime - utc) * 1000.0 |
|
|
1604 | 1342 | self.basicHeaderObj.utc = utc |
|
|
1605 | 1343 | self.basicHeaderObj.miliSecond = milisecond |
|
|
1606 | 1344 | self.basicHeaderObj.timeZone = self.dataOut.timeZone |
|
|
1607 | 1345 | self.basicHeaderObj.dstFlag = self.dataOut.dstFlag |
|
|
1608 | 1346 | self.basicHeaderObj.errorCount = self.dataOut.errorCount |
|
|
1609 | 1347 | |
|
|
1610 | 1348 | def setFirstHeader(self): |
|
|
1611 | 1349 | """ |
|
|
1612 | 1350 | Obtiene una copia del First Header |
|
|
1613 | 1351 | |
|
|
1614 | 1352 | Affected: |
|
|
1615 | 1353 | |
|
|
1616 | 1354 | self.basicHeaderObj |
|
|
1617 | 1355 | self.systemHeaderObj |
|
|
1618 | 1356 | self.radarControllerHeaderObj |
|
|
1619 | 1357 | self.processingHeaderObj self. |
|
|
1620 | 1358 | |
|
|
1621 | 1359 | Return: |
|
|
1622 | 1360 | None |
|
|
1623 | 1361 | """ |
|
|
1624 | 1362 | |
|
|
1625 | 1363 | raise NotImplementedError |
|
|
1626 | 1364 | |
|
|
1627 | 1365 | def __writeFirstHeader(self): |
|
|
1628 | 1366 | """ |
|
|
1629 | 1367 | Escribe el primer header del file es decir el Basic header y el Long header (SystemHeader, RadarControllerHeader, ProcessingHeader) |
|
|
1630 | 1368 | |
|
|
1631 | 1369 | Affected: |
|
|
1632 | 1370 | __dataType |
|
|
1633 | 1371 | |
|
|
1634 | 1372 | Return: |
|
|
1635 | 1373 | None |
|
|
1636 | 1374 | """ |
|
|
1637 | 1375 | |
|
|
1638 | 1376 | # CALCULAR PARAMETROS |
|
|
1639 | 1377 | |
|
|
1640 | 1378 | sizeLongHeader = self.systemHeaderObj.size + \ |
|
|
1641 | 1379 | self.radarControllerHeaderObj.size + self.processingHeaderObj.size |
|
|
1642 | 1380 | self.basicHeaderObj.size = self.basicHeaderSize + sizeLongHeader |
|
|
1643 | 1381 | |
|
|
1644 | 1382 | self.basicHeaderObj.write(self.fp) |
|
|
1645 | 1383 | self.systemHeaderObj.write(self.fp) |
|
|
1646 | 1384 | self.radarControllerHeaderObj.write(self.fp) |
|
|
1647 | 1385 | self.processingHeaderObj.write(self.fp) |
|
|
1648 | 1386 | |
|
|
1649 | 1387 | def __setNewBlock(self): |
|
|
1650 | 1388 | """ |
|
|
1651 | 1389 | Si es un nuevo file escribe el First Header caso contrario escribe solo el Basic Header |
|
|
1652 | 1390 | |
|
|
1653 | 1391 | Return: |
|
|
1654 | 1392 | 0 : si no pudo escribir nada |
|
|
1655 | 1393 | 1 : Si escribio el Basic el First Header |
|
|
1656 | 1394 | """ |
|
|
1657 | 1395 | if self.fp == None: |
|
|
1658 | 1396 | self.setNextFile() |
|
|
1659 | 1397 | |
|
|
1660 | 1398 | if self.flagIsNewFile: |
|
|
1661 | 1399 | return 1 |
|
|
1662 | 1400 | |
|
|
1663 | 1401 | if self.blockIndex < self.processingHeaderObj.dataBlocksPerFile: |
|
|
1664 | 1402 | self.basicHeaderObj.write(self.fp) |
|
|
1665 | 1403 | return 1 |
|
|
1666 | 1404 | |
|
|
1667 | 1405 | if not(self.setNextFile()): |
|
|
1668 | 1406 | return 0 |
|
|
1669 | 1407 | |
|
|
1670 | 1408 | return 1 |
|
|
1671 | 1409 | |
|
|
1672 | 1410 | def writeNextBlock(self): |
|
|
1673 | 1411 | """ |
|
|
1674 | 1412 | Selecciona el bloque siguiente de datos y los escribe en un file |
|
|
1675 | 1413 | |
|
|
1676 | 1414 | Return: |
|
|
1677 | 1415 | 0 : Si no hizo pudo escribir el bloque de datos |
|
|
1678 | 1416 | 1 : Si no pudo escribir el bloque de datos |
|
|
1679 | 1417 | """ |
|
|
1680 | 1418 | if not(self.__setNewBlock()): |
|
|
1681 | 1419 | return 0 |
|
|
1682 | 1420 | |
|
|
1683 | 1421 | self.writeBlock() |
|
|
1684 | 1422 | |
|
|
1685 | 1423 | print("[Writing] Block No. %d/%d" % (self.blockIndex, |
|
|
1686 | 1424 | self.processingHeaderObj.dataBlocksPerFile)) |
|
|
1687 | 1425 | |
|
|
1688 | 1426 | return 1 |
|
|
1689 | 1427 | |
|
|
1690 | 1428 | def setNextFile(self): |
|
|
1691 | """ | |
|
|
1692 | Determina el siguiente file que sera escrito | |
|
|
1429 | """Determina el siguiente file que sera escrito | |
|
|
1693 | 1430 | |
|
|
1694 | 1431 | Affected: |
|
|
1695 | 1432 | self.filename |
|
|
1696 | 1433 | self.subfolder |
|
|
1697 | 1434 | self.fp |
|
|
1698 | 1435 | self.setFile |
|
|
1699 | 1436 | self.flagIsNewFile |
|
|
1700 | 1437 | |
|
|
1701 | 1438 | Return: |
|
|
1702 | 1439 | 0 : Si el archivo no puede ser escrito |
|
|
1703 | 1440 | 1 : Si el archivo esta listo para ser escrito |
|
|
1704 | 1441 | """ |
|
|
1705 | 1442 | ext = self.ext |
|
|
1706 | 1443 | path = self.path |
|
|
1707 | 1444 | |
|
|
1708 | 1445 | if self.fp != None: |
|
|
1709 | 1446 | self.fp.close() |
|
|
1710 | 1447 | |
|
|
1448 | if not os.path.exists(path): | |
|
|
1449 | os.mkdir(path) | |
|
|
1450 | ||
|
|
1711 | 1451 | timeTuple = time.localtime(self.dataOut.utctime) |
|
|
1712 | 1452 | subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year, timeTuple.tm_yday) |
|
|
1713 | 1453 | |
|
|
1714 | 1454 | fullpath = os.path.join(path, subfolder) |
|
|
1715 | 1455 | setFile = self.setFile |
|
|
1716 | 1456 | |
|
|
1717 | 1457 | if not(os.path.exists(fullpath)): |
|
|
1718 | 1458 | os.mkdir(fullpath) |
|
|
1719 | 1459 | setFile = -1 # inicializo mi contador de seteo |
|
|
1720 | 1460 | else: |
|
|
1721 | 1461 | filesList = os.listdir(fullpath) |
|
|
1722 | 1462 | if len(filesList) > 0: |
|
|
1723 | 1463 | filesList = sorted(filesList, key=str.lower) |
|
|
1724 | 1464 | filen = filesList[-1] |
|
|
1725 | 1465 | # el filename debera tener el siguiente formato |
|
|
1726 | 1466 | # 0 1234 567 89A BCDE (hex) |
|
|
1727 | 1467 | # x YYYY DDD SSS .ext |
|
|
1728 | 1468 | if isNumber(filen[8:11]): |
|
|
1729 | 1469 | # inicializo mi contador de seteo al seteo del ultimo file |
|
|
1730 | 1470 | setFile = int(filen[8:11]) |
|
|
1731 | 1471 | else: |
|
|
1732 | 1472 | setFile = -1 |
|
|
1733 | 1473 | else: |
|
|
1734 | 1474 | setFile = -1 # inicializo mi contador de seteo |
|
|
1735 | 1475 | |
|
|
1736 | 1476 | setFile += 1 |
|
|
1737 | 1477 | |
|
|
1738 | 1478 | # If this is a new day it resets some values |
|
|
1739 | 1479 | if self.dataOut.datatime.date() > self.fileDate: |
|
|
1740 | 1480 | setFile = 0 |
|
|
1741 | 1481 | self.nTotalBlocks = 0 |
|
|
1742 | 1482 | |
|
|
1743 | 1483 | filen = '{}{:04d}{:03d}{:03d}{}'.format( |
|
|
1744 | 1484 | self.optchar, timeTuple.tm_year, timeTuple.tm_yday, setFile, ext) |
|
|
1745 | 1485 | |
|
|
1746 | 1486 | filename = os.path.join(path, subfolder, filen) |
|
|
1747 | 1487 | |
|
|
1748 | 1488 | fp = open(filename, 'wb') |
|
|
1749 | 1489 | |
|
|
1750 | 1490 | self.blockIndex = 0 |
|
|
1751 | ||
|
|
1752 | # guardando atributos | |
|
|
1753 | 1491 | self.filename = filename |
|
|
1754 | 1492 | self.subfolder = subfolder |
|
|
1755 | 1493 | self.fp = fp |
|
|
1756 | 1494 | self.setFile = setFile |
|
|
1757 | 1495 | self.flagIsNewFile = 1 |
|
|
1758 | 1496 | self.fileDate = self.dataOut.datatime.date() |
|
|
1759 | ||
|
|
1760 | 1497 | self.setFirstHeader() |
|
|
1761 | 1498 | |
|
|
1762 | 1499 | print('[Writing] Opening file: %s' % self.filename) |
|
|
1763 | 1500 | |
|
|
1764 | 1501 | self.__writeFirstHeader() |
|
|
1765 | 1502 | |
|
|
1766 | 1503 | return 1 |
|
|
1767 | 1504 | |
|
|
1768 | 1505 | def setup(self, dataOut, path, blocksPerFile, profilesPerBlock=64, set=None, ext=None, datatype=4): |
|
|
1769 | 1506 | """ |
|
|
1770 | 1507 | Setea el tipo de formato en la cual sera guardada la data y escribe el First Header |
|
|
1771 | 1508 | |
|
|
1772 | 1509 | Inputs: |
|
|
1773 | 1510 | path : directory where data will be saved |
|
|
1774 | 1511 | profilesPerBlock : number of profiles per block |
|
|
1775 | 1512 | set : initial file set |
|
|
1776 | 1513 | datatype : An integer number that defines data type: |
|
|
1777 | 1514 | 0 : int8 (1 byte) |
|
|
1778 | 1515 | 1 : int16 (2 bytes) |
|
|
1779 | 1516 | 2 : int32 (4 bytes) |
|
|
1780 | 1517 | 3 : int64 (8 bytes) |
|
|
1781 | 1518 | 4 : float32 (4 bytes) |
|
|
1782 | 1519 | 5 : double64 (8 bytes) |
|
|
1783 | 1520 | |
|
|
1784 | 1521 | Return: |
|
|
1785 | 1522 | 0 : Si no realizo un buen seteo |
|
|
1786 | 1523 | 1 : Si realizo un buen seteo |
|
|
1787 | 1524 | """ |
|
|
1788 | 1525 | |
|
|
1789 | 1526 | if ext == None: |
|
|
1790 | 1527 | ext = self.ext |
|
|
1791 | 1528 | |
|
|
1792 | 1529 | self.ext = ext.lower() |
|
|
1793 | 1530 | |
|
|
1794 | 1531 | self.path = path |
|
|
1795 | 1532 | |
|
|
1796 | 1533 | if set is None: |
|
|
1797 | 1534 | self.setFile = -1 |
|
|
1798 | 1535 | else: |
|
|
1799 | 1536 | self.setFile = set - 1 |
|
|
1800 | 1537 | |
|
|
1801 | 1538 | self.blocksPerFile = blocksPerFile |
|
|
1802 | ||
|
|
1803 | 1539 | self.profilesPerBlock = profilesPerBlock |
|
|
1804 | ||
|
|
1805 | 1540 | self.dataOut = dataOut |
|
|
1806 | 1541 | self.fileDate = self.dataOut.datatime.date() |
|
|
1807 | # By default | |
|
|
1808 | 1542 | self.dtype = self.dataOut.dtype |
|
|
1809 | 1543 | |
|
|
1810 | 1544 | if datatype is not None: |
|
|
1811 | 1545 | self.dtype = get_numpy_dtype(datatype) |
|
|
1812 | 1546 | |
|
|
1813 | 1547 | if not(self.setNextFile()): |
|
|
1814 | 1548 | print("[Writing] There isn't a next file") |
|
|
1815 | 1549 | return 0 |
|
|
1816 | 1550 | |
|
|
1817 | 1551 | self.setBlockDimension() |
|
|
1818 | 1552 | |
|
|
1819 | 1553 | return 1 |
|
|
1820 | 1554 | |
|
|
1821 | 1555 | def run(self, dataOut, path, blocksPerFile=100, profilesPerBlock=64, set=None, ext=None, datatype=4, **kwargs): |
|
|
1822 | 1556 | |
|
|
1823 | 1557 | if not(self.isConfig): |
|
|
1824 | 1558 | |
|
|
1825 | 1559 | self.setup(dataOut, path, blocksPerFile, profilesPerBlock=profilesPerBlock, |
|
|
1826 | 1560 | set=set, ext=ext, datatype=datatype, **kwargs) |
|
|
1827 | 1561 | self.isConfig = True |
|
|
1828 | 1562 | |
|
|
1829 | 1563 | self.dataOut = dataOut |
|
|
1830 | 1564 | self.putData() |
|
|
1831 | return self.dataOut No newline at end of file | |
|
|
1565 | return self.dataOut | |
| @@ -1,675 +1,527 | |||
|
|
1 | 1 | ''' |
|
|
2 | 2 | Created on Jul 2, 2014 |
|
|
3 | 3 | |
|
|
4 | 4 | @author: roj-idl71 |
|
|
5 | 5 | ''' |
|
|
6 | 6 | import numpy |
|
|
7 | 7 | |
|
|
8 | 8 | from schainpy.model.io.jroIO_base import LOCALTIME, JRODataReader, JRODataWriter |
|
|
9 | 9 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator |
|
|
10 | 10 | from schainpy.model.data.jroheaderIO import PROCFLAG, BasicHeader, SystemHeader, RadarControllerHeader, ProcessingHeader |
|
|
11 | 11 | from schainpy.model.data.jrodata import Spectra |
|
|
12 | 12 | from schainpy.utils import log |
|
|
13 | 13 | |
|
|
14 | 14 | @MPDecorator |
|
|
15 | 15 | class SpectraReader(JRODataReader, ProcessingUnit): |
|
|
16 | 16 | """ |
|
|
17 | 17 | Esta clase permite leer datos de espectros desde archivos procesados (.pdata). La lectura |
|
|
18 | 18 | de los datos siempre se realiza por bloques. Los datos leidos (array de 3 dimensiones) |
|
|
19 | 19 | son almacenados en tres buffer's para el Self Spectra, el Cross Spectra y el DC Channel. |
|
|
20 | 20 | |
|
|
21 | 21 | paresCanalesIguales * alturas * perfiles (Self Spectra) |
|
|
22 | 22 | paresCanalesDiferentes * alturas * perfiles (Cross Spectra) |
|
|
23 | 23 | canales * alturas (DC Channels) |
|
|
24 | 24 | |
|
|
25 | 25 | Esta clase contiene instancias (objetos) de las clases BasicHeader, SystemHeader, |
|
|
26 | 26 | RadarControllerHeader y Spectra. Los tres primeros se usan para almacenar informacion de la |
|
|
27 | 27 | cabecera de datos (metadata), y el cuarto (Spectra) para obtener y almacenar un bloque de |
|
|
28 | 28 | datos desde el "buffer" cada vez que se ejecute el metodo "getData". |
|
|
29 | 29 | |
|
|
30 | 30 | Example: |
|
|
31 | 31 | dpath = "/home/myuser/data" |
|
|
32 | 32 | |
|
|
33 | 33 | startTime = datetime.datetime(2010,1,20,0,0,0,0,0,0) |
|
|
34 | 34 | |
|
|
35 | 35 | endTime = datetime.datetime(2010,1,21,23,59,59,0,0,0) |
|
|
36 | 36 | |
|
|
37 | 37 | readerObj = SpectraReader() |
|
|
38 | 38 | |
|
|
39 | 39 | readerObj.setup(dpath, startTime, endTime) |
|
|
40 | 40 | |
|
|
41 | 41 | while(True): |
|
|
42 | 42 | |
|
|
43 | 43 | readerObj.getData() |
|
|
44 | 44 | |
|
|
45 | 45 | print readerObj.data_spc |
|
|
46 | 46 | |
|
|
47 | 47 | print readerObj.data_cspc |
|
|
48 | 48 | |
|
|
49 | 49 | print readerObj.data_dc |
|
|
50 | 50 | |
|
|
51 | 51 | if readerObj.flagNoMoreFiles: |
|
|
52 | 52 | break |
|
|
53 | 53 | |
|
|
54 | 54 | """ |
|
|
55 | 55 | |
|
|
56 | pts2read_SelfSpectra = 0 | |
|
|
57 | ||
|
|
58 | pts2read_CrossSpectra = 0 | |
|
|
59 | ||
|
|
60 | pts2read_DCchannels = 0 | |
|
|
61 | ||
|
|
62 | ext = ".pdata" | |
|
|
63 | ||
|
|
64 | optchar = "P" | |
|
|
65 | ||
|
|
66 | dataOut = None | |
|
|
67 | ||
|
|
68 | nRdChannels = None | |
|
|
69 | ||
|
|
70 | nRdPairs = None | |
|
|
71 | ||
|
|
72 | rdPairList = [] | |
|
|
73 | ||
|
|
74 | 56 | def __init__(self):#, **kwargs): |
|
|
75 | 57 | """ |
|
|
76 | 58 | Inicializador de la clase SpectraReader para la lectura de datos de espectros. |
|
|
77 | 59 | |
|
|
78 | 60 | Inputs: |
|
|
79 | 61 | dataOut : Objeto de la clase Spectra. Este objeto sera utilizado para |
|
|
80 | 62 | almacenar un perfil de datos cada vez que se haga un requerimiento |
|
|
81 | 63 | (getData). El perfil sera obtenido a partir del buffer de datos, |
|
|
82 | 64 | si el buffer esta vacio se hara un nuevo proceso de lectura de un |
|
|
83 | 65 | bloque de datos. |
|
|
84 | 66 | Si este parametro no es pasado se creara uno internamente. |
|
|
85 | 67 | |
|
|
86 | 68 | Affected: |
|
|
87 | 69 | self.dataOut |
|
|
88 | 70 | |
|
|
89 | 71 | Return : None |
|
|
90 | 72 | """ |
|
|
91 | 73 | |
|
|
92 | #Eliminar de la base la herencia | |
|
|
93 | ProcessingUnit.__init__(self)#, **kwargs) | |
|
|
94 | ||
|
|
74 | ProcessingUnit.__init__(self) | |
|
|
95 | 75 | |
|
|
96 | 76 | self.pts2read_SelfSpectra = 0 |
|
|
97 | ||
|
|
98 | 77 | self.pts2read_CrossSpectra = 0 |
|
|
99 | ||
|
|
100 | self.pts2read_DCchannels = 0 | |
|
|
101 | ||
|
|
102 | self.datablock = None | |
|
|
103 | ||
|
|
104 | self.utc = None | |
|
|
105 | ||
|
|
78 | self.pts2read_DCchannels = 0 | |
|
|
106 | 79 | self.ext = ".pdata" |
|
|
107 | ||
|
|
108 | 80 | self.optchar = "P" |
|
|
109 | ||
|
|
110 | 81 | self.basicHeaderObj = BasicHeader(LOCALTIME) |
|
|
111 | ||
|
|
112 | 82 | self.systemHeaderObj = SystemHeader() |
|
|
113 | ||
|
|
114 | 83 | self.radarControllerHeaderObj = RadarControllerHeader() |
|
|
115 | ||
|
|
116 | 84 | self.processingHeaderObj = ProcessingHeader() |
|
|
117 | ||
|
|
118 | self.online = 0 | |
|
|
119 | ||
|
|
120 | self.fp = None | |
|
|
121 | ||
|
|
122 | self.idFile = None | |
|
|
123 | ||
|
|
124 | self.dtype = None | |
|
|
125 | ||
|
|
126 | self.fileSizeByHeader = None | |
|
|
127 | ||
|
|
128 | self.filenameList = [] | |
|
|
129 | ||
|
|
130 | self.filename = None | |
|
|
131 | ||
|
|
132 | self.fileSize = None | |
|
|
133 | ||
|
|
134 | self.firstHeaderSize = 0 | |
|
|
135 | ||
|
|
136 | self.basicHeaderSize = 24 | |
|
|
137 | ||
|
|
138 | self.pathList = [] | |
|
|
139 | ||
|
|
140 | 85 | self.lastUTTime = 0 |
|
|
141 | ||
|
|
142 | 86 | self.maxTimeStep = 30 |
|
|
143 | ||
|
|
144 |
self. |
|
|
|
145 | ||
|
|
146 |
self.s |
|
|
|
147 | ||
|
|
148 | self.path = None | |
|
|
149 | ||
|
|
150 | self.delay = 60 #seconds | |
|
|
151 | ||
|
|
152 | self.nTries = 3 #quantity tries | |
|
|
153 | ||
|
|
154 | self.nFiles = 3 #number of files for searching | |
|
|
155 | ||
|
|
156 | self.nReadBlocks = 0 | |
|
|
157 | ||
|
|
158 | self.flagIsNewFile = 1 | |
|
|
159 | ||
|
|
160 | self.__isFirstTimeOnline = 1 | |
|
|
161 | ||
|
|
162 | ||
|
|
163 | self.flagDiscontinuousBlock = 0 | |
|
|
164 | ||
|
|
165 | self.flagIsNewBlock = 0 | |
|
|
166 | ||
|
|
167 | self.nTotalBlocks = 0 | |
|
|
168 | ||
|
|
169 | self.blocksize = 0 | |
|
|
170 | ||
|
|
171 | self.dataOut = self.createObjByDefault() | |
|
|
172 | ||
|
|
173 | self.profileIndex = 1 #Always | |
|
|
174 | ||
|
|
87 | self.dataOut = Spectra() | |
|
|
88 | self.profileIndex = 1 | |
|
|
89 | self.nRdChannels = None | |
|
|
90 | self.nRdPairs = None | |
|
|
91 | self.rdPairList = [] | |
|
|
175 | 92 | |
|
|
176 | 93 | def createObjByDefault(self): |
|
|
177 | 94 | |
|
|
178 | 95 | dataObj = Spectra() |
|
|
179 | 96 | |
|
|
180 | 97 | return dataObj |
|
|
181 | 98 | |
|
|
182 | 99 | def __hasNotDataInBuffer(self): |
|
|
183 | 100 | return 1 |
|
|
184 | 101 | |
|
|
185 | 102 | |
|
|
186 | 103 | def getBlockDimension(self): |
|
|
187 | 104 | """ |
|
|
188 | 105 | Obtiene la cantidad de puntos a leer por cada bloque de datos |
|
|
189 | 106 | |
|
|
190 | 107 | Affected: |
|
|
191 | 108 | self.nRdChannels |
|
|
192 | 109 | self.nRdPairs |
|
|
193 | 110 | self.pts2read_SelfSpectra |
|
|
194 | 111 | self.pts2read_CrossSpectra |
|
|
195 | 112 | self.pts2read_DCchannels |
|
|
196 | 113 | self.blocksize |
|
|
197 | 114 | self.dataOut.nChannels |
|
|
198 | 115 | self.dataOut.nPairs |
|
|
199 | 116 | |
|
|
200 | 117 | Return: |
|
|
201 | 118 | None |
|
|
202 | 119 | """ |
|
|
203 | 120 | self.nRdChannels = 0 |
|
|
204 | 121 | self.nRdPairs = 0 |
|
|
205 | 122 | self.rdPairList = [] |
|
|
206 | 123 | |
|
|
207 | 124 | for i in range(0, self.processingHeaderObj.totalSpectra*2, 2): |
|
|
208 | 125 | if self.processingHeaderObj.spectraComb[i] == self.processingHeaderObj.spectraComb[i+1]: |
|
|
209 | 126 | self.nRdChannels = self.nRdChannels + 1 #par de canales iguales |
|
|
210 | 127 | else: |
|
|
211 | 128 | self.nRdPairs = self.nRdPairs + 1 #par de canales diferentes |
|
|
212 | 129 | self.rdPairList.append((self.processingHeaderObj.spectraComb[i], self.processingHeaderObj.spectraComb[i+1])) |
|
|
213 | 130 | |
|
|
214 | 131 | pts2read = self.processingHeaderObj.nHeights * self.processingHeaderObj.profilesPerBlock |
|
|
215 | 132 | |
|
|
216 | 133 | self.pts2read_SelfSpectra = int(self.nRdChannels * pts2read) |
|
|
217 | 134 | self.blocksize = self.pts2read_SelfSpectra |
|
|
218 | 135 | |
|
|
219 | 136 | if self.processingHeaderObj.flag_cspc: |
|
|
220 | 137 | self.pts2read_CrossSpectra = int(self.nRdPairs * pts2read) |
|
|
221 | 138 | self.blocksize += self.pts2read_CrossSpectra |
|
|
222 | 139 | |
|
|
223 | 140 | if self.processingHeaderObj.flag_dc: |
|
|
224 | 141 | self.pts2read_DCchannels = int(self.systemHeaderObj.nChannels * self.processingHeaderObj.nHeights) |
|
|
225 | 142 | self.blocksize += self.pts2read_DCchannels |
|
|
226 | 143 | |
|
|
227 | # self.blocksize = self.pts2read_SelfSpectra + self.pts2read_CrossSpectra + self.pts2read_DCchannels | |
|
|
228 | ||
|
|
229 | ||
|
|
230 | 144 | def readBlock(self): |
|
|
231 | 145 | """ |
|
|
232 | 146 | Lee el bloque de datos desde la posicion actual del puntero del archivo |
|
|
233 | 147 | (self.fp) y actualiza todos los parametros relacionados al bloque de datos |
|
|
234 | 148 | (metadata + data). La data leida es almacenada en el buffer y el contador del buffer |
|
|
235 | 149 | es seteado a 0 |
|
|
236 | 150 | |
|
|
237 | 151 | Return: None |
|
|
238 | 152 | |
|
|
239 | 153 | Variables afectadas: |
|
|
240 | 154 | |
|
|
241 | 155 | self.flagIsNewFile |
|
|
242 | 156 | self.flagIsNewBlock |
|
|
243 | 157 | self.nTotalBlocks |
|
|
244 | 158 | self.data_spc |
|
|
245 | 159 | self.data_cspc |
|
|
246 | 160 | self.data_dc |
|
|
247 | 161 | |
|
|
248 | 162 | Exceptions: |
|
|
249 | 163 | Si un bloque leido no es un bloque valido |
|
|
250 | 164 | """ |
|
|
251 | blockOk_flag = False | |
|
|
165 | ||
|
|
252 | 166 | fpointer = self.fp.tell() |
|
|
253 | 167 | |
|
|
254 | 168 | spc = numpy.fromfile( self.fp, self.dtype[0], self.pts2read_SelfSpectra ) |
|
|
255 | 169 | spc = spc.reshape( (self.nRdChannels, self.processingHeaderObj.nHeights, self.processingHeaderObj.profilesPerBlock) ) #transforma a un arreglo 3D |
|
|
256 | 170 | |
|
|
257 | 171 | if self.processingHeaderObj.flag_cspc: |
|
|
258 | 172 | cspc = numpy.fromfile( self.fp, self.dtype, self.pts2read_CrossSpectra ) |
|
|
259 | 173 | cspc = cspc.reshape( (self.nRdPairs, self.processingHeaderObj.nHeights, self.processingHeaderObj.profilesPerBlock) ) #transforma a un arreglo 3D |
|
|
260 | 174 | |
|
|
261 | 175 | if self.processingHeaderObj.flag_dc: |
|
|
262 | 176 | dc = numpy.fromfile( self.fp, self.dtype, self.pts2read_DCchannels ) #int(self.processingHeaderObj.nHeights*self.systemHeaderObj.nChannels) ) |
|
|
263 | 177 | dc = dc.reshape( (self.systemHeaderObj.nChannels, self.processingHeaderObj.nHeights) ) #transforma a un arreglo 2D |
|
|
264 | 178 | |
|
|
265 | ||
|
|
266 | 179 | if not self.processingHeaderObj.shif_fft: |
|
|
267 | 180 | #desplaza a la derecha en el eje 2 determinadas posiciones |
|
|
268 | 181 | shift = int(self.processingHeaderObj.profilesPerBlock/2) |
|
|
269 | 182 | spc = numpy.roll( spc, shift , axis=2 ) |
|
|
270 | 183 | |
|
|
271 | 184 | if self.processingHeaderObj.flag_cspc: |
|
|
272 | 185 | #desplaza a la derecha en el eje 2 determinadas posiciones |
|
|
273 | 186 | cspc = numpy.roll( cspc, shift, axis=2 ) |
|
|
274 | 187 | |
|
|
275 | 188 | #Dimensions : nChannels, nProfiles, nSamples |
|
|
276 | 189 | spc = numpy.transpose( spc, (0,2,1) ) |
|
|
277 | 190 | self.data_spc = spc |
|
|
278 | 191 | |
|
|
279 | 192 | if self.processingHeaderObj.flag_cspc: |
|
|
280 | 193 | cspc = numpy.transpose( cspc, (0,2,1) ) |
|
|
281 | 194 | self.data_cspc = cspc['real'] + cspc['imag']*1j |
|
|
282 | 195 | else: |
|
|
283 | 196 | self.data_cspc = None |
|
|
284 | 197 | |
|
|
285 | 198 | if self.processingHeaderObj.flag_dc: |
|
|
286 | 199 | self.data_dc = dc['real'] + dc['imag']*1j |
|
|
287 | 200 | else: |
|
|
288 | 201 | self.data_dc = None |
|
|
289 | 202 | |
|
|
290 | 203 | self.flagIsNewFile = 0 |
|
|
291 | 204 | self.flagIsNewBlock = 1 |
|
|
292 | 205 | |
|
|
293 | 206 | self.nTotalBlocks += 1 |
|
|
294 | 207 | self.nReadBlocks += 1 |
|
|
295 | 208 | |
|
|
296 | 209 | return 1 |
|
|
297 | 210 | |
|
|
298 | 211 | def getFirstHeader(self): |
|
|
299 | 212 | |
|
|
300 | 213 | self.getBasicHeader() |
|
|
301 | ||
|
|
302 | 214 | self.dataOut.systemHeaderObj = self.systemHeaderObj.copy() |
|
|
303 | ||
|
|
304 | 215 | self.dataOut.radarControllerHeaderObj = self.radarControllerHeaderObj.copy() |
|
|
305 | ||
|
|
306 | # self.dataOut.ippSeconds = self.ippSeconds | |
|
|
307 | ||
|
|
308 | # self.dataOut.timeInterval = self.radarControllerHeaderObj.ippSeconds * self.processingHeaderObj.nCohInt * self.processingHeaderObj.nIncohInt * self.processingHeaderObj.profilesPerBlock | |
|
|
309 | ||
|
|
310 | 216 | self.dataOut.dtype = self.dtype |
|
|
311 | ||
|
|
312 | # self.dataOut.nPairs = self.nPairs | |
|
|
313 | ||
|
|
314 | 217 | self.dataOut.pairsList = self.rdPairList |
|
|
315 | ||
|
|
316 | 218 | self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock |
|
|
317 | ||
|
|
318 | 219 | self.dataOut.nFFTPoints = self.processingHeaderObj.profilesPerBlock |
|
|
319 | ||
|
|
320 | 220 | self.dataOut.nCohInt = self.processingHeaderObj.nCohInt |
|
|
321 | ||
|
|
322 | 221 | self.dataOut.nIncohInt = self.processingHeaderObj.nIncohInt |
|
|
323 | ||
|
|
324 | 222 | xf = self.processingHeaderObj.firstHeight + self.processingHeaderObj.nHeights*self.processingHeaderObj.deltaHeight |
|
|
325 | ||
|
|
326 | 223 | self.dataOut.heightList = numpy.arange(self.processingHeaderObj.firstHeight, xf, self.processingHeaderObj.deltaHeight) |
|
|
327 | ||
|
|
328 | 224 | self.dataOut.channelList = list(range(self.systemHeaderObj.nChannels)) |
|
|
329 | ||
|
|
330 | 225 | self.dataOut.flagShiftFFT = True #Data is always shifted |
|
|
331 | ||
|
|
332 | 226 | self.dataOut.flagDecodeData = self.processingHeaderObj.flag_decode #asumo q la data no esta decodificada |
|
|
333 | ||
|
|
334 | 227 | self.dataOut.flagDeflipData = self.processingHeaderObj.flag_deflip #asumo q la data esta sin flip |
|
|
335 | 228 | |
|
|
336 | 229 | def getData(self): |
|
|
337 | 230 | """ |
|
|
338 | 231 | First method to execute before "RUN" is called. |
|
|
339 | 232 | |
|
|
340 | 233 | Copia el buffer de lectura a la clase "Spectra", |
|
|
341 | 234 | con todos los parametros asociados a este (metadata). cuando no hay datos en el buffer de |
|
|
342 | 235 | lectura es necesario hacer una nueva lectura de los bloques de datos usando "readNextBlock" |
|
|
343 | 236 | |
|
|
344 | 237 | Return: |
|
|
345 | 238 | 0 : Si no hay mas archivos disponibles |
|
|
346 | 239 | 1 : Si hizo una buena copia del buffer |
|
|
347 | 240 | |
|
|
348 | 241 | Affected: |
|
|
349 | 242 | self.dataOut |
|
|
350 | ||
|
|
351 | 243 | self.flagDiscontinuousBlock |
|
|
352 | 244 | self.flagIsNewBlock |
|
|
353 | 245 | """ |
|
|
354 | 246 | |
|
|
355 | 247 | if self.flagNoMoreFiles: |
|
|
356 | 248 | self.dataOut.flagNoData = True |
|
|
357 | 249 | return 0 |
|
|
358 | 250 | |
|
|
359 | 251 | self.flagDiscontinuousBlock = 0 |
|
|
360 | 252 | self.flagIsNewBlock = 0 |
|
|
361 | 253 | |
|
|
362 | 254 | if self.__hasNotDataInBuffer(): |
|
|
363 | 255 | |
|
|
364 | 256 | if not( self.readNextBlock() ): |
|
|
365 | 257 | self.dataOut.flagNoData = True |
|
|
366 | 258 | return 0 |
|
|
367 | 259 | |
|
|
368 | 260 | #data es un numpy array de 3 dmensiones (perfiles, alturas y canales) |
|
|
369 | 261 | |
|
|
370 | 262 | if self.data_spc is None: |
|
|
371 | 263 | self.dataOut.flagNoData = True |
|
|
372 | 264 | return 0 |
|
|
373 | 265 | |
|
|
374 | 266 | self.getBasicHeader() |
|
|
375 | ||
|
|
376 | 267 | self.getFirstHeader() |
|
|
377 | ||
|
|
378 | 268 | self.dataOut.data_spc = self.data_spc |
|
|
379 | ||
|
|
380 | 269 | self.dataOut.data_cspc = self.data_cspc |
|
|
381 | ||
|
|
382 | 270 | self.dataOut.data_dc = self.data_dc |
|
|
383 | ||
|
|
384 | 271 | self.dataOut.flagNoData = False |
|
|
385 | ||
|
|
386 | 272 | self.dataOut.realtime = self.online |
|
|
387 | 273 | |
|
|
388 | 274 | return self.dataOut.data_spc |
|
|
275 | ||
|
|
276 | ||
|
|
389 | 277 | @MPDecorator |
|
|
390 | 278 | class SpectraWriter(JRODataWriter, Operation): |
|
|
391 | 279 | |
|
|
392 | 280 | """ |
|
|
393 | 281 | Esta clase permite escribir datos de espectros a archivos procesados (.pdata). La escritura |
|
|
394 | 282 | de los datos siempre se realiza por bloques. |
|
|
395 | 283 | """ |
|
|
396 | 284 | |
|
|
397 | ext = ".pdata" | |
|
|
398 | ||
|
|
399 | optchar = "P" | |
|
|
400 | ||
|
|
401 | shape_spc_Buffer = None | |
|
|
402 | ||
|
|
403 | shape_cspc_Buffer = None | |
|
|
404 | ||
|
|
405 | shape_dc_Buffer = None | |
|
|
406 | ||
|
|
407 | data_spc = None | |
|
|
408 | ||
|
|
409 | data_cspc = None | |
|
|
410 | ||
|
|
411 | data_dc = None | |
|
|
412 | ||
|
|
413 | 285 | def __init__(self): |
|
|
414 | 286 | """ |
|
|
415 | 287 | Inicializador de la clase SpectraWriter para la escritura de datos de espectros. |
|
|
416 | 288 | |
|
|
417 | 289 | Affected: |
|
|
418 | 290 | self.dataOut |
|
|
419 | 291 | self.basicHeaderObj |
|
|
420 | 292 | self.systemHeaderObj |
|
|
421 | 293 | self.radarControllerHeaderObj |
|
|
422 | 294 | self.processingHeaderObj |
|
|
423 | 295 | |
|
|
424 | 296 | Return: None |
|
|
425 | 297 | """ |
|
|
426 | 298 | |
|
|
427 | 299 | Operation.__init__(self) |
|
|
428 | 300 | |
|
|
429 |
self. |
|
|
|
430 | ||
|
|
301 | self.ext = ".pdata" | |
|
|
302 | self.optchar = "P" | |
|
|
303 | self.shape_spc_Buffer = None | |
|
|
304 | self.shape_cspc_Buffer = None | |
|
|
305 | self.shape_dc_Buffer = None | |
|
|
431 | 306 | self.data_spc = None |
|
|
432 | ||
|
|
433 | 307 | self.data_cspc = None |
|
|
434 | ||
|
|
435 | 308 | self.data_dc = None |
|
|
436 | ||
|
|
437 | self.fp = None | |
|
|
438 | ||
|
|
439 | self.flagIsNewFile = 1 | |
|
|
440 | ||
|
|
441 | self.nTotalBlocks = 0 | |
|
|
442 | ||
|
|
443 | self.flagIsNewBlock = 0 | |
|
|
444 | ||
|
|
445 | 309 | self.setFile = None |
|
|
446 | ||
|
|
447 | self.dtype = None | |
|
|
448 | ||
|
|
449 | self.path = None | |
|
|
450 | ||
|
|
451 | 310 | self.noMoreFiles = 0 |
|
|
452 | ||
|
|
453 | self.filename = None | |
|
|
454 | ||
|
|
455 | 311 | self.basicHeaderObj = BasicHeader(LOCALTIME) |
|
|
456 | ||
|
|
457 | 312 | self.systemHeaderObj = SystemHeader() |
|
|
458 | ||
|
|
459 | 313 | self.radarControllerHeaderObj = RadarControllerHeader() |
|
|
460 | ||
|
|
461 | 314 | self.processingHeaderObj = ProcessingHeader() |
|
|
462 | 315 | |
|
|
463 | ||
|
|
464 | 316 | def hasAllDataInBuffer(self): |
|
|
465 | 317 | return 1 |
|
|
466 | 318 | |
|
|
467 | 319 | |
|
|
468 | 320 | def setBlockDimension(self): |
|
|
469 | 321 | """ |
|
|
470 | 322 | Obtiene las formas dimensionales del los subbloques de datos que componen un bloque |
|
|
471 | 323 | |
|
|
472 | 324 | Affected: |
|
|
473 | 325 | self.shape_spc_Buffer |
|
|
474 | 326 | self.shape_cspc_Buffer |
|
|
475 | 327 | self.shape_dc_Buffer |
|
|
476 | 328 | |
|
|
477 | 329 | Return: None |
|
|
478 | 330 | """ |
|
|
479 | 331 | self.shape_spc_Buffer = (self.dataOut.nChannels, |
|
|
480 | 332 | self.processingHeaderObj.nHeights, |
|
|
481 | 333 | self.processingHeaderObj.profilesPerBlock) |
|
|
482 | 334 | |
|
|
483 | 335 | self.shape_cspc_Buffer = (self.dataOut.nPairs, |
|
|
484 | 336 | self.processingHeaderObj.nHeights, |
|
|
485 | 337 | self.processingHeaderObj.profilesPerBlock) |
|
|
486 | 338 | |
|
|
487 | 339 | self.shape_dc_Buffer = (self.dataOut.nChannels, |
|
|
488 | 340 | self.processingHeaderObj.nHeights) |
|
|
489 | 341 | |
|
|
490 | 342 | |
|
|
491 | 343 | def writeBlock(self): |
|
|
492 | 344 | """processingHeaderObj |
|
|
493 | 345 | Escribe el buffer en el file designado |
|
|
494 | 346 | |
|
|
495 | 347 | Affected: |
|
|
496 | 348 | self.data_spc |
|
|
497 | 349 | self.data_cspc |
|
|
498 | 350 | self.data_dc |
|
|
499 | 351 | self.flagIsNewFile |
|
|
500 | 352 | self.flagIsNewBlock |
|
|
501 | 353 | self.nTotalBlocks |
|
|
502 | 354 | self.nWriteBlocks |
|
|
503 | 355 | |
|
|
504 | 356 | Return: None |
|
|
505 | 357 | """ |
|
|
506 | 358 | |
|
|
507 | 359 | spc = numpy.transpose( self.data_spc, (0,2,1) ) |
|
|
508 | 360 | if not self.processingHeaderObj.shif_fft: |
|
|
509 | 361 | spc = numpy.roll( spc, self.processingHeaderObj.profilesPerBlock/2, axis=2 ) #desplaza a la derecha en el eje 2 determinadas posiciones |
|
|
510 | 362 | data = spc.reshape((-1)) |
|
|
511 | 363 | data = data.astype(self.dtype[0]) |
|
|
512 | 364 | data.tofile(self.fp) |
|
|
513 | 365 | |
|
|
514 | 366 | if self.data_cspc is not None: |
|
|
515 | 367 | |
|
|
516 | 368 | cspc = numpy.transpose( self.data_cspc, (0,2,1) ) |
|
|
517 | 369 | data = numpy.zeros( numpy.shape(cspc), self.dtype ) |
|
|
518 | 370 | #print 'data.shape', self.shape_cspc_Buffer |
|
|
519 | 371 | if not self.processingHeaderObj.shif_fft: |
|
|
520 | 372 | cspc = numpy.roll( cspc, self.processingHeaderObj.profilesPerBlock/2, axis=2 ) #desplaza a la derecha en el eje 2 determinadas posiciones |
|
|
521 | 373 | data['real'] = cspc.real |
|
|
522 | 374 | data['imag'] = cspc.imag |
|
|
523 | 375 | data = data.reshape((-1)) |
|
|
524 | 376 | data.tofile(self.fp) |
|
|
525 | 377 | |
|
|
526 | 378 | if self.data_dc is not None: |
|
|
527 | 379 | |
|
|
528 | 380 | dc = self.data_dc |
|
|
529 | 381 | data = numpy.zeros( numpy.shape(dc), self.dtype ) |
|
|
530 | 382 | data['real'] = dc.real |
|
|
531 | 383 | data['imag'] = dc.imag |
|
|
532 | 384 | data = data.reshape((-1)) |
|
|
533 | 385 | data.tofile(self.fp) |
|
|
534 | 386 | |
|
|
535 | 387 | # self.data_spc.fill(0) |
|
|
536 | 388 | # |
|
|
537 | 389 | # if self.data_dc is not None: |
|
|
538 | 390 | # self.data_dc.fill(0) |
|
|
539 | 391 | # |
|
|
540 | 392 | # if self.data_cspc is not None: |
|
|
541 | 393 | # self.data_cspc.fill(0) |
|
|
542 | 394 | |
|
|
543 | 395 | self.flagIsNewFile = 0 |
|
|
544 | 396 | self.flagIsNewBlock = 1 |
|
|
545 | 397 | self.nTotalBlocks += 1 |
|
|
546 | 398 | self.nWriteBlocks += 1 |
|
|
547 | 399 | self.blockIndex += 1 |
|
|
548 | 400 | |
|
|
549 | 401 | # print "[Writing] Block = %d04" %self.blockIndex |
|
|
550 | 402 | |
|
|
551 | 403 | def putData(self): |
|
|
552 | 404 | """ |
|
|
553 | 405 | Setea un bloque de datos y luego los escribe en un file |
|
|
554 | 406 | |
|
|
555 | 407 | Affected: |
|
|
556 | 408 | self.data_spc |
|
|
557 | 409 | self.data_cspc |
|
|
558 | 410 | self.data_dc |
|
|
559 | 411 | |
|
|
560 | 412 | Return: |
|
|
561 | 413 | 0 : Si no hay data o no hay mas files que puedan escribirse |
|
|
562 | 414 | 1 : Si se escribio la data de un bloque en un file |
|
|
563 | 415 | """ |
|
|
564 | 416 | |
|
|
565 | 417 | if self.dataOut.flagNoData: |
|
|
566 | 418 | return 0 |
|
|
567 | 419 | |
|
|
568 | 420 | self.flagIsNewBlock = 0 |
|
|
569 | 421 | |
|
|
570 | 422 | if self.dataOut.flagDiscontinuousBlock: |
|
|
571 | 423 | self.data_spc.fill(0) |
|
|
572 | 424 | if self.dataOut.data_cspc is not None: |
|
|
573 | 425 | self.data_cspc.fill(0) |
|
|
574 | 426 | if self.dataOut.data_dc is not None: |
|
|
575 | 427 | self.data_dc.fill(0) |
|
|
576 | 428 | self.setNextFile() |
|
|
577 | 429 | |
|
|
578 | 430 | if self.flagIsNewFile == 0: |
|
|
579 | 431 | self.setBasicHeader() |
|
|
580 | 432 | |
|
|
581 | 433 | self.data_spc = self.dataOut.data_spc.copy() |
|
|
582 | 434 | |
|
|
583 | 435 | if self.dataOut.data_cspc is not None: |
|
|
584 | 436 | self.data_cspc = self.dataOut.data_cspc.copy() |
|
|
585 | 437 | |
|
|
586 | 438 | if self.dataOut.data_dc is not None: |
|
|
587 | 439 | self.data_dc = self.dataOut.data_dc.copy() |
|
|
588 | 440 | |
|
|
589 | 441 | # #self.processingHeaderObj.dataBlocksPerFile) |
|
|
590 | 442 | if self.hasAllDataInBuffer(): |
|
|
591 | 443 | # self.setFirstHeader() |
|
|
592 | 444 | self.writeNextBlock() |
|
|
593 | 445 | |
|
|
594 | 446 | def __getBlockSize(self): |
|
|
595 | 447 | ''' |
|
|
596 | 448 | Este metodos determina el cantidad de bytes para un bloque de datos de tipo Spectra |
|
|
597 | 449 | ''' |
|
|
598 | 450 | |
|
|
599 | 451 | dtype_width = self.getDtypeWidth() |
|
|
600 | 452 | |
|
|
601 | 453 | pts2write = self.dataOut.nHeights * self.dataOut.nFFTPoints |
|
|
602 | 454 | |
|
|
603 | 455 | pts2write_SelfSpectra = int(self.dataOut.nChannels * pts2write) |
|
|
604 | 456 | blocksize = (pts2write_SelfSpectra*dtype_width) |
|
|
605 | 457 | |
|
|
606 | 458 | if self.dataOut.data_cspc is not None: |
|
|
607 | 459 | pts2write_CrossSpectra = int(self.dataOut.nPairs * pts2write) |
|
|
608 | 460 | blocksize += (pts2write_CrossSpectra*dtype_width*2) |
|
|
609 | 461 | |
|
|
610 | 462 | if self.dataOut.data_dc is not None: |
|
|
611 | 463 | pts2write_DCchannels = int(self.dataOut.nChannels * self.dataOut.nHeights) |
|
|
612 | 464 | blocksize += (pts2write_DCchannels*dtype_width*2) |
|
|
613 | 465 | |
|
|
614 | 466 | # blocksize = blocksize #* datatypeValue * 2 #CORREGIR ESTO |
|
|
615 | 467 | |
|
|
616 | 468 | return blocksize |
|
|
617 | 469 | |
|
|
618 | 470 | def setFirstHeader(self): |
|
|
619 | 471 | |
|
|
620 | 472 | """ |
|
|
621 | 473 | Obtiene una copia del First Header |
|
|
622 | 474 | |
|
|
623 | 475 | Affected: |
|
|
624 | 476 | self.systemHeaderObj |
|
|
625 | 477 | self.radarControllerHeaderObj |
|
|
626 | 478 | self.dtype |
|
|
627 | 479 | |
|
|
628 | 480 | Return: |
|
|
629 | 481 | None |
|
|
630 | 482 | """ |
|
|
631 | 483 | |
|
|
632 | 484 | self.systemHeaderObj = self.dataOut.systemHeaderObj.copy() |
|
|
633 | 485 | self.systemHeaderObj.nChannels = self.dataOut.nChannels |
|
|
634 | 486 | self.radarControllerHeaderObj = self.dataOut.radarControllerHeaderObj.copy() |
|
|
635 | 487 | |
|
|
636 | 488 | self.processingHeaderObj.dtype = 1 # Spectra |
|
|
637 | 489 | self.processingHeaderObj.blockSize = self.__getBlockSize() |
|
|
638 | 490 | self.processingHeaderObj.profilesPerBlock = self.dataOut.nFFTPoints |
|
|
639 | 491 | self.processingHeaderObj.dataBlocksPerFile = self.blocksPerFile |
|
|
640 | 492 | self.processingHeaderObj.nWindows = 1 #podria ser 1 o self.dataOut.processingHeaderObj.nWindows |
|
|
641 | 493 | self.processingHeaderObj.nCohInt = self.dataOut.nCohInt# Se requiere para determinar el valor de timeInterval |
|
|
642 | 494 | self.processingHeaderObj.nIncohInt = self.dataOut.nIncohInt |
|
|
643 | 495 | self.processingHeaderObj.totalSpectra = self.dataOut.nPairs + self.dataOut.nChannels |
|
|
644 | 496 | self.processingHeaderObj.shif_fft = self.dataOut.flagShiftFFT |
|
|
645 | 497 | |
|
|
646 | 498 | if self.processingHeaderObj.totalSpectra > 0: |
|
|
647 | 499 | channelList = [] |
|
|
648 | 500 | for channel in range(self.dataOut.nChannels): |
|
|
649 | 501 | channelList.append(channel) |
|
|
650 | 502 | channelList.append(channel) |
|
|
651 | 503 | |
|
|
652 | 504 | pairsList = [] |
|
|
653 | 505 | if self.dataOut.nPairs > 0: |
|
|
654 | 506 | for pair in self.dataOut.pairsList: |
|
|
655 | 507 | pairsList.append(pair[0]) |
|
|
656 | 508 | pairsList.append(pair[1]) |
|
|
657 | 509 | |
|
|
658 | 510 | spectraComb = channelList + pairsList |
|
|
659 | 511 | spectraComb = numpy.array(spectraComb, dtype="u1") |
|
|
660 | 512 | self.processingHeaderObj.spectraComb = spectraComb |
|
|
661 | 513 | |
|
|
662 | 514 | if self.dataOut.code is not None: |
|
|
663 | 515 | self.processingHeaderObj.code = self.dataOut.code |
|
|
664 | 516 | self.processingHeaderObj.nCode = self.dataOut.nCode |
|
|
665 | 517 | self.processingHeaderObj.nBaud = self.dataOut.nBaud |
|
|
666 | 518 | |
|
|
667 | 519 | if self.processingHeaderObj.nWindows != 0: |
|
|
668 | 520 | self.processingHeaderObj.firstHeight = self.dataOut.heightList[0] |
|
|
669 | 521 | self.processingHeaderObj.deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0] |
|
|
670 | 522 | self.processingHeaderObj.nHeights = self.dataOut.nHeights |
|
|
671 | 523 | self.processingHeaderObj.samplesWin = self.dataOut.nHeights |
|
|
672 | 524 | |
|
|
673 | 525 | self.processingHeaderObj.processFlags = self.getProcessFlags() |
|
|
674 | 526 | |
|
|
675 | 527 | self.setBasicHeader() No newline at end of file |
| @@ -1,754 +1,680 | |||
|
|
1 | 1 | ''' |
|
|
2 | 2 | Created on Jul 2, 2014 |
|
|
3 | 3 | |
|
|
4 | 4 | @author: roj-idl71 |
|
|
5 | 5 | ''' |
|
|
6 | 6 | |
|
|
7 | 7 | import numpy |
|
|
8 | 8 | |
|
|
9 | 9 | from .jroIO_base import LOCALTIME, JRODataReader, JRODataWriter |
|
|
10 | 10 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator |
|
|
11 | 11 | from schainpy.model.data.jroheaderIO import PROCFLAG, BasicHeader, SystemHeader, RadarControllerHeader, ProcessingHeader |
|
|
12 | 12 | from schainpy.model.data.jrodata import Voltage |
|
|
13 | 13 | import zmq |
|
|
14 | 14 | import tempfile |
|
|
15 | 15 | from io import StringIO |
|
|
16 | 16 | # from _sha import blocksize |
|
|
17 | 17 | |
|
|
18 | 18 | @MPDecorator |
|
|
19 | 19 | class VoltageReader(JRODataReader, ProcessingUnit): |
|
|
20 | 20 | """ |
|
|
21 | 21 | Esta clase permite leer datos de voltage desde archivos en formato rawdata (.r). La lectura |
|
|
22 | 22 | de los datos siempre se realiza por bloques. Los datos leidos (array de 3 dimensiones: |
|
|
23 | 23 | perfiles*alturas*canales) son almacenados en la variable "buffer". |
|
|
24 | 24 | |
|
|
25 | 25 | perfiles * alturas * canales |
|
|
26 | 26 | |
|
|
27 | 27 | Esta clase contiene instancias (objetos) de las clases BasicHeader, SystemHeader, |
|
|
28 | 28 | RadarControllerHeader y Voltage. Los tres primeros se usan para almacenar informacion de la |
|
|
29 | 29 | cabecera de datos (metadata), y el cuarto (Voltage) para obtener y almacenar un perfil de |
|
|
30 | 30 | datos desde el "buffer" cada vez que se ejecute el metodo "getData". |
|
|
31 | 31 | |
|
|
32 | 32 | Example: |
|
|
33 | 33 | |
|
|
34 | 34 | dpath = "/home/myuser/data" |
|
|
35 | 35 | |
|
|
36 | 36 | startTime = datetime.datetime(2010,1,20,0,0,0,0,0,0) |
|
|
37 | 37 | |
|
|
38 | 38 | endTime = datetime.datetime(2010,1,21,23,59,59,0,0,0) |
|
|
39 | 39 | |
|
|
40 | 40 | readerObj = VoltageReader() |
|
|
41 | 41 | |
|
|
42 | 42 | readerObj.setup(dpath, startTime, endTime) |
|
|
43 | 43 | |
|
|
44 | 44 | while(True): |
|
|
45 | 45 | |
|
|
46 | 46 | #to get one profile |
|
|
47 | 47 | profile = readerObj.getData() |
|
|
48 | 48 | |
|
|
49 | 49 | #print the profile |
|
|
50 | 50 | print profile |
|
|
51 | 51 | |
|
|
52 | 52 | #If you want to see all datablock |
|
|
53 | 53 | print readerObj.datablock |
|
|
54 | 54 | |
|
|
55 | 55 | if readerObj.flagNoMoreFiles: |
|
|
56 | 56 | break |
|
|
57 | 57 | |
|
|
58 | 58 | """ |
|
|
59 | 59 | |
|
|
60 | ext = ".r" | |
|
|
61 | ||
|
|
62 | optchar = "D" | |
|
|
63 | dataOut = None | |
|
|
64 | ||
|
|
65 | def __init__(self):#, **kwargs): | |
|
|
60 | def __init__(self): | |
|
|
66 | 61 | """ |
|
|
67 | 62 | Inicializador de la clase VoltageReader para la lectura de datos de voltage. |
|
|
68 | 63 | |
|
|
69 | 64 | Input: |
|
|
70 | 65 | dataOut : Objeto de la clase Voltage. Este objeto sera utilizado para |
|
|
71 | 66 | almacenar un perfil de datos cada vez que se haga un requerimiento |
|
|
72 | 67 | (getData). El perfil sera obtenido a partir del buffer de datos, |
|
|
73 | 68 | si el buffer esta vacio se hara un nuevo proceso de lectura de un |
|
|
74 | 69 | bloque de datos. |
|
|
75 | 70 | Si este parametro no es pasado se creara uno internamente. |
|
|
76 | 71 | |
|
|
77 | 72 | Variables afectadas: |
|
|
78 | 73 | self.dataOut |
|
|
79 | 74 | |
|
|
80 | 75 | Return: |
|
|
81 | 76 | None |
|
|
82 | 77 | """ |
|
|
83 | 78 | |
|
|
84 |
ProcessingUnit.__init__(self) |
|
|
|
85 | ||
|
|
86 | self.isConfig = False | |
|
|
87 | ||
|
|
88 | self.datablock = None | |
|
|
89 | ||
|
|
90 | self.utc = 0 | |
|
|
91 | ||
|
|
79 | ProcessingUnit.__init__(self) | |
|
|
80 | ||
|
|
92 | 81 | self.ext = ".r" |
|
|
93 | ||
|
|
94 | 82 | self.optchar = "D" |
|
|
95 | ||
|
|
96 | 83 | self.basicHeaderObj = BasicHeader(LOCALTIME) |
|
|
97 | ||
|
|
98 | 84 | self.systemHeaderObj = SystemHeader() |
|
|
99 | ||
|
|
100 | 85 | self.radarControllerHeaderObj = RadarControllerHeader() |
|
|
101 | ||
|
|
102 | 86 | self.processingHeaderObj = ProcessingHeader() |
|
|
103 | ||
|
|
104 | self.online = 0 | |
|
|
105 | ||
|
|
106 | self.fp = None | |
|
|
107 | ||
|
|
108 | self.idFile = None | |
|
|
109 | ||
|
|
110 | self.dtype = None | |
|
|
111 | ||
|
|
112 | self.fileSizeByHeader = None | |
|
|
113 | ||
|
|
114 | self.filenameList = [] | |
|
|
115 | ||
|
|
116 | self.filename = None | |
|
|
117 | ||
|
|
118 | self.fileSize = None | |
|
|
119 | ||
|
|
120 | self.firstHeaderSize = 0 | |
|
|
121 | ||
|
|
122 | self.basicHeaderSize = 24 | |
|
|
123 | ||
|
|
124 | self.pathList = [] | |
|
|
125 | ||
|
|
126 | self.filenameList = [] | |
|
|
127 | ||
|
|
128 | 87 | self.lastUTTime = 0 |
|
|
129 | ||
|
|
130 | self.maxTimeStep = 30 | |
|
|
131 | ||
|
|
132 | self.flagNoMoreFiles = 0 | |
|
|
133 | ||
|
|
134 | self.set = 0 | |
|
|
135 | ||
|
|
136 | self.path = None | |
|
|
137 | ||
|
|
138 | self.profileIndex = 2**32 - 1 | |
|
|
139 | ||
|
|
140 | self.delay = 3 # seconds | |
|
|
141 | ||
|
|
142 | self.nTries = 3 # quantity tries | |
|
|
143 | ||
|
|
144 | self.nFiles = 3 # number of files for searching | |
|
|
145 | ||
|
|
146 | self.nReadBlocks = 0 | |
|
|
147 | ||
|
|
148 | self.flagIsNewFile = 1 | |
|
|
149 | ||
|
|
150 | self.__isFirstTimeOnline = 1 | |
|
|
151 | ||
|
|
152 | # self.ippSeconds = 0 | |
|
|
153 | ||
|
|
154 | self.flagDiscontinuousBlock = 0 | |
|
|
155 | ||
|
|
156 | self.flagIsNewBlock = 0 | |
|
|
157 | ||
|
|
158 | self.nTotalBlocks = 0 | |
|
|
159 | ||
|
|
160 | self.blocksize = 0 | |
|
|
161 | ||
|
|
162 | self.dataOut = self.createObjByDefault() | |
|
|
163 | ||
|
|
164 | self.nTxs = 1 | |
|
|
165 | ||
|
|
166 | self.txIndex = 0 | |
|
|
88 | self.profileIndex = 2**32 - 1 | |
|
|
89 | self.dataOut = Voltage() | |
|
|
90 | self.selBlocksize = None | |
|
|
91 | self.selBlocktime = None | |
|
|
167 | 92 | |
|
|
168 | 93 | def createObjByDefault(self): |
|
|
169 | 94 | |
|
|
170 | 95 | dataObj = Voltage() |
|
|
171 | 96 | |
|
|
172 | 97 | return dataObj |
|
|
173 | 98 | |
|
|
174 | 99 | def __hasNotDataInBuffer(self): |
|
|
175 | 100 | |
|
|
176 | 101 | if self.profileIndex >= self.processingHeaderObj.profilesPerBlock * self.nTxs: |
|
|
177 | 102 | return 1 |
|
|
178 | 103 | |
|
|
179 | 104 | return 0 |
|
|
180 | 105 | |
|
|
181 | 106 | def getBlockDimension(self): |
|
|
182 | 107 | """ |
|
|
183 | 108 | Obtiene la cantidad de puntos a leer por cada bloque de datos |
|
|
184 | 109 | |
|
|
185 | 110 | Affected: |
|
|
186 | 111 | self.blocksize |
|
|
187 | 112 | |
|
|
188 | 113 | Return: |
|
|
189 | 114 | None |
|
|
190 | 115 | """ |
|
|
191 | 116 | pts2read = self.processingHeaderObj.profilesPerBlock * \ |
|
|
192 | 117 | self.processingHeaderObj.nHeights * self.systemHeaderObj.nChannels |
|
|
193 | 118 | self.blocksize = pts2read |
|
|
194 | 119 | |
|
|
195 | 120 | def readBlock(self): |
|
|
196 | 121 | """ |
|
|
197 | 122 | readBlock lee el bloque de datos desde la posicion actual del puntero del archivo |
|
|
198 | 123 | (self.fp) y actualiza todos los parametros relacionados al bloque de datos |
|
|
199 | 124 | (metadata + data). La data leida es almacenada en el buffer y el contador del buffer |
|
|
200 | 125 | es seteado a 0 |
|
|
201 | 126 | |
|
|
202 | 127 | Inputs: |
|
|
203 | 128 | None |
|
|
204 | 129 | |
|
|
205 | 130 | Return: |
|
|
206 | 131 | None |
|
|
207 | 132 | |
|
|
208 | 133 | Affected: |
|
|
209 | 134 | self.profileIndex |
|
|
210 | 135 | self.datablock |
|
|
211 | 136 | self.flagIsNewFile |
|
|
212 | 137 | self.flagIsNewBlock |
|
|
213 | 138 | self.nTotalBlocks |
|
|
214 | 139 | |
|
|
215 | 140 | Exceptions: |
|
|
216 | 141 | Si un bloque leido no es un bloque valido |
|
|
217 | 142 | """ |
|
|
218 | 143 | |
|
|
219 | 144 | # if self.server is not None: |
|
|
220 | 145 | # self.zBlock = self.receiver.recv() |
|
|
221 | 146 | # self.zHeader = self.zBlock[:24] |
|
|
222 | 147 | # self.zDataBlock = self.zBlock[24:] |
|
|
223 | 148 | # junk = numpy.fromstring(self.zDataBlock, numpy.dtype([('real','<i4'),('imag','<i4')])) |
|
|
224 | 149 | # self.processingHeaderObj.profilesPerBlock = 240 |
|
|
225 | 150 | # self.processingHeaderObj.nHeights = 248 |
|
|
226 | 151 | # self.systemHeaderObj.nChannels |
|
|
227 | 152 | # else: |
|
|
228 | 153 | current_pointer_location = self.fp.tell() |
|
|
229 | 154 | junk = numpy.fromfile(self.fp, self.dtype, self.blocksize) |
|
|
230 | 155 | |
|
|
231 | 156 | try: |
|
|
232 | 157 | junk = junk.reshape((self.processingHeaderObj.profilesPerBlock, |
|
|
233 | 158 | self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels)) |
|
|
234 | 159 | except: |
|
|
235 | 160 | # print "The read block (%3d) has not enough data" %self.nReadBlocks |
|
|
236 | 161 | |
|
|
237 | 162 | if self.waitDataBlock(pointer_location=current_pointer_location): |
|
|
238 | 163 | junk = numpy.fromfile(self.fp, self.dtype, self.blocksize) |
|
|
239 | 164 | junk = junk.reshape((self.processingHeaderObj.profilesPerBlock, |
|
|
240 | 165 | self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels)) |
|
|
241 | 166 | # return 0 |
|
|
242 | 167 | |
|
|
243 | 168 | # Dimensions : nChannels, nProfiles, nSamples |
|
|
244 | 169 | |
|
|
245 | 170 | junk = numpy.transpose(junk, (2, 0, 1)) |
|
|
246 | 171 | self.datablock = junk['real'] + junk['imag'] * 1j |
|
|
247 | 172 | |
|
|
248 | 173 | self.profileIndex = 0 |
|
|
249 | 174 | |
|
|
250 | 175 | self.flagIsNewFile = 0 |
|
|
251 | 176 | self.flagIsNewBlock = 1 |
|
|
252 | 177 | |
|
|
253 | 178 | self.nTotalBlocks += 1 |
|
|
254 | 179 | self.nReadBlocks += 1 |
|
|
255 | 180 | |
|
|
256 | 181 | return 1 |
|
|
257 | 182 | |
|
|
258 | 183 | def getFirstHeader(self): |
|
|
259 | 184 | |
|
|
260 | 185 | self.getBasicHeader() |
|
|
261 | 186 | |
|
|
262 | 187 | self.dataOut.processingHeaderObj = self.processingHeaderObj.copy() |
|
|
263 | 188 | |
|
|
264 | 189 | self.dataOut.systemHeaderObj = self.systemHeaderObj.copy() |
|
|
265 | 190 | |
|
|
266 | 191 | self.dataOut.radarControllerHeaderObj = self.radarControllerHeaderObj.copy() |
|
|
267 | 192 | |
|
|
268 | 193 | if self.nTxs > 1: |
|
|
269 | 194 | self.dataOut.radarControllerHeaderObj.ippSeconds = self.radarControllerHeaderObj.ippSeconds / self.nTxs |
|
|
270 | 195 | # Time interval and code are propierties of dataOut. Its value depends of radarControllerHeaderObj. |
|
|
271 | 196 | |
|
|
272 | 197 | # self.dataOut.timeInterval = self.radarControllerHeaderObj.ippSeconds * self.processingHeaderObj.nCohInt |
|
|
273 | 198 | # |
|
|
274 | 199 | # if self.radarControllerHeaderObj.code is not None: |
|
|
275 | 200 | # |
|
|
276 | 201 | # self.dataOut.nCode = self.radarControllerHeaderObj.nCode |
|
|
277 | 202 | # |
|
|
278 | 203 | # self.dataOut.nBaud = self.radarControllerHeaderObj.nBaud |
|
|
279 | 204 | # |
|
|
280 | 205 | # self.dataOut.code = self.radarControllerHeaderObj.code |
|
|
281 | 206 | |
|
|
282 | 207 | self.dataOut.dtype = self.dtype |
|
|
283 | 208 | |
|
|
284 | 209 | self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock |
|
|
285 | 210 | |
|
|
286 | 211 | self.dataOut.heightList = numpy.arange( |
|
|
287 | 212 | self.processingHeaderObj.nHeights) * self.processingHeaderObj.deltaHeight + self.processingHeaderObj.firstHeight |
|
|
288 | 213 | |
|
|
289 | 214 | self.dataOut.channelList = list(range(self.systemHeaderObj.nChannels)) |
|
|
290 | 215 | |
|
|
291 | 216 | self.dataOut.nCohInt = self.processingHeaderObj.nCohInt |
|
|
292 | 217 | |
|
|
293 | 218 | # asumo q la data no esta decodificada |
|
|
294 | 219 | self.dataOut.flagDecodeData = self.processingHeaderObj.flag_decode |
|
|
295 | 220 | |
|
|
296 | 221 | # asumo q la data no esta sin flip |
|
|
297 | 222 | self.dataOut.flagDeflipData = self.processingHeaderObj.flag_deflip |
|
|
298 | 223 | |
|
|
299 | 224 | self.dataOut.flagShiftFFT = self.processingHeaderObj.shif_fft |
|
|
300 | 225 | |
|
|
301 | 226 | def reshapeData(self): |
|
|
302 | 227 | |
|
|
303 | 228 | if self.nTxs < 0: |
|
|
304 | 229 | return |
|
|
305 | 230 | |
|
|
306 | 231 | if self.nTxs == 1: |
|
|
307 | 232 | return |
|
|
308 | 233 | |
|
|
309 | 234 | if self.nTxs < 1 and self.processingHeaderObj.profilesPerBlock % (1. / self.nTxs) != 0: |
|
|
310 | 235 | raise ValueError("1./nTxs (=%f), should be a multiple of nProfiles (=%d)" % ( |
|
|
311 | 236 | 1. / self.nTxs, self.processingHeaderObj.profilesPerBlock)) |
|
|
312 | 237 | |
|
|
313 | 238 | if self.nTxs > 1 and self.processingHeaderObj.nHeights % self.nTxs != 0: |
|
|
314 | 239 | raise ValueError("nTxs (=%d), should be a multiple of nHeights (=%d)" % ( |
|
|
315 | 240 | self.nTxs, self.processingHeaderObj.nHeights)) |
|
|
316 | 241 | |
|
|
317 | 242 | self.datablock = self.datablock.reshape( |
|
|
318 | 243 | (self.systemHeaderObj.nChannels, self.processingHeaderObj.profilesPerBlock * self.nTxs, int(self.processingHeaderObj.nHeights / self.nTxs))) |
|
|
319 | 244 | |
|
|
320 | 245 | self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock * self.nTxs |
|
|
321 | 246 | self.dataOut.heightList = numpy.arange(self.processingHeaderObj.nHeights / self.nTxs) * \ |
|
|
322 | 247 | self.processingHeaderObj.deltaHeight + self.processingHeaderObj.firstHeight |
|
|
323 | 248 | self.dataOut.radarControllerHeaderObj.ippSeconds = self.radarControllerHeaderObj.ippSeconds / self.nTxs |
|
|
324 | 249 | |
|
|
325 | 250 | return |
|
|
326 | 251 | |
|
|
327 | 252 | def readFirstHeaderFromServer(self): |
|
|
328 | 253 | |
|
|
329 | 254 | self.getFirstHeader() |
|
|
330 | 255 | |
|
|
331 | 256 | self.firstHeaderSize = self.basicHeaderObj.size |
|
|
332 | 257 | |
|
|
333 | 258 | datatype = int(numpy.log2((self.processingHeaderObj.processFlags & |
|
|
334 | 259 | PROCFLAG.DATATYPE_MASK)) - numpy.log2(PROCFLAG.DATATYPE_CHAR)) |
|
|
335 | 260 | if datatype == 0: |
|
|
336 | 261 | datatype_str = numpy.dtype([('real', '<i1'), ('imag', '<i1')]) |
|
|
337 | 262 | elif datatype == 1: |
|
|
338 | 263 | datatype_str = numpy.dtype([('real', '<i2'), ('imag', '<i2')]) |
|
|
339 | 264 | elif datatype == 2: |
|
|
340 | 265 | datatype_str = numpy.dtype([('real', '<i4'), ('imag', '<i4')]) |
|
|
341 | 266 | elif datatype == 3: |
|
|
342 | 267 | datatype_str = numpy.dtype([('real', '<i8'), ('imag', '<i8')]) |
|
|
343 | 268 | elif datatype == 4: |
|
|
344 | 269 | datatype_str = numpy.dtype([('real', '<f4'), ('imag', '<f4')]) |
|
|
345 | 270 | elif datatype == 5: |
|
|
346 | 271 | datatype_str = numpy.dtype([('real', '<f8'), ('imag', '<f8')]) |
|
|
347 | 272 | else: |
|
|
348 | 273 | raise ValueError('Data type was not defined') |
|
|
349 | 274 | |
|
|
350 | 275 | self.dtype = datatype_str |
|
|
351 | 276 | #self.ippSeconds = 2 * 1000 * self.radarControllerHeaderObj.ipp / self.c |
|
|
352 | 277 | self.fileSizeByHeader = self.processingHeaderObj.dataBlocksPerFile * self.processingHeaderObj.blockSize + \ |
|
|
353 | 278 | self.firstHeaderSize + self.basicHeaderSize * \ |
|
|
354 | 279 | (self.processingHeaderObj.dataBlocksPerFile - 1) |
|
|
355 | 280 | # self.dataOut.channelList = numpy.arange(self.systemHeaderObj.numChannels) |
|
|
356 | 281 | # self.dataOut.channelIndexList = numpy.arange(self.systemHeaderObj.numChannels) |
|
|
357 | 282 | self.getBlockDimension() |
|
|
358 | 283 | |
|
|
359 | 284 | def getFromServer(self): |
|
|
360 | 285 | self.flagDiscontinuousBlock = 0 |
|
|
361 | 286 | self.profileIndex = 0 |
|
|
362 | 287 | self.flagIsNewBlock = 1 |
|
|
363 | 288 | self.dataOut.flagNoData = False |
|
|
364 | 289 | self.nTotalBlocks += 1 |
|
|
365 | 290 | self.nReadBlocks += 1 |
|
|
366 | 291 | self.blockPointer = 0 |
|
|
367 | 292 | |
|
|
368 | 293 | block = self.receiver.recv() |
|
|
369 | 294 | |
|
|
370 | 295 | self.basicHeaderObj.read(block[self.blockPointer:]) |
|
|
371 | 296 | self.blockPointer += self.basicHeaderObj.length |
|
|
372 | 297 | self.systemHeaderObj.read(block[self.blockPointer:]) |
|
|
373 | 298 | self.blockPointer += self.systemHeaderObj.length |
|
|
374 | 299 | self.radarControllerHeaderObj.read(block[self.blockPointer:]) |
|
|
375 | 300 | self.blockPointer += self.radarControllerHeaderObj.length |
|
|
376 | 301 | self.processingHeaderObj.read(block[self.blockPointer:]) |
|
|
377 | 302 | self.blockPointer += self.processingHeaderObj.length |
|
|
378 | 303 | self.readFirstHeaderFromServer() |
|
|
379 | 304 | |
|
|
380 | 305 | timestamp = self.basicHeaderObj.get_datatime() |
|
|
381 | 306 | print('[Reading] - Block {} - {}'.format(self.nTotalBlocks, timestamp)) |
|
|
382 | 307 | current_pointer_location = self.blockPointer |
|
|
383 | 308 | junk = numpy.fromstring( |
|
|
384 | 309 | block[self.blockPointer:], self.dtype, self.blocksize) |
|
|
385 | 310 | |
|
|
386 | 311 | try: |
|
|
387 | 312 | junk = junk.reshape((self.processingHeaderObj.profilesPerBlock, |
|
|
388 | 313 | self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels)) |
|
|
389 | 314 | except: |
|
|
390 | 315 | # print "The read block (%3d) has not enough data" %self.nReadBlocks |
|
|
391 | 316 | if self.waitDataBlock(pointer_location=current_pointer_location): |
|
|
392 | 317 | junk = numpy.fromstring( |
|
|
393 | 318 | block[self.blockPointer:], self.dtype, self.blocksize) |
|
|
394 | 319 | junk = junk.reshape((self.processingHeaderObj.profilesPerBlock, |
|
|
395 | 320 | self.processingHeaderObj.nHeights, self.systemHeaderObj.nChannels)) |
|
|
396 | 321 | # return 0 |
|
|
397 | 322 | |
|
|
398 | 323 | # Dimensions : nChannels, nProfiles, nSamples |
|
|
399 | 324 | |
|
|
400 | 325 | junk = numpy.transpose(junk, (2, 0, 1)) |
|
|
401 | 326 | self.datablock = junk['real'] + junk['imag'] * 1j |
|
|
402 | 327 | self.profileIndex = 0 |
|
|
403 | 328 | if self.selBlocksize == None: |
|
|
404 | 329 | self.selBlocksize = self.dataOut.nProfiles |
|
|
405 | 330 | if self.selBlocktime != None: |
|
|
406 | 331 | if self.dataOut.nCohInt is not None: |
|
|
407 | 332 | nCohInt = self.dataOut.nCohInt |
|
|
408 | 333 | else: |
|
|
409 | 334 | nCohInt = 1 |
|
|
410 | 335 | self.selBlocksize = int(self.dataOut.nProfiles * round(self.selBlocktime / ( |
|
|
411 | 336 | nCohInt * self.dataOut.ippSeconds * self.dataOut.nProfiles))) |
|
|
412 | 337 | self.dataOut.data = self.datablock[:, |
|
|
413 | 338 | self.profileIndex:self.profileIndex + self.selBlocksize, :] |
|
|
414 | 339 | datasize = self.dataOut.data.shape[1] |
|
|
415 | 340 | if datasize < self.selBlocksize: |
|
|
416 | 341 | buffer = numpy.zeros( |
|
|
417 | 342 | (self.dataOut.data.shape[0], self.selBlocksize, self.dataOut.data.shape[2]), dtype='complex') |
|
|
418 | 343 | buffer[:, :datasize, :] = self.dataOut.data |
|
|
419 | 344 | self.dataOut.data = buffer |
|
|
420 | 345 | self.profileIndex = blockIndex |
|
|
421 | 346 | |
|
|
422 | 347 | self.dataOut.flagDataAsBlock = True |
|
|
423 | 348 | self.flagIsNewBlock = 1 |
|
|
424 | 349 | self.dataOut.realtime = self.online |
|
|
425 | 350 | |
|
|
426 | 351 | return self.dataOut.data |
|
|
427 | 352 | |
|
|
428 | 353 | def getData(self): |
|
|
429 | 354 | """ |
|
|
430 | 355 | getData obtiene una unidad de datos del buffer de lectura, un perfil, y la copia al objeto self.dataOut |
|
|
431 | 356 | del tipo "Voltage" con todos los parametros asociados a este (metadata). cuando no hay datos |
|
|
432 | 357 | en el buffer de lectura es necesario hacer una nueva lectura de los bloques de datos usando |
|
|
433 | 358 | "readNextBlock" |
|
|
434 | 359 | |
|
|
435 | 360 | Ademas incrementa el contador del buffer "self.profileIndex" en 1. |
|
|
436 | 361 | |
|
|
437 | 362 | Return: |
|
|
438 | 363 | |
|
|
439 | 364 | Si el flag self.getByBlock ha sido seteado el bloque completo es copiado a self.dataOut y el self.profileIndex |
|
|
440 | 365 | es igual al total de perfiles leidos desde el archivo. |
|
|
441 | 366 | |
|
|
442 | 367 | Si self.getByBlock == False: |
|
|
443 | 368 | |
|
|
444 | 369 | self.dataOut.data = buffer[:, thisProfile, :] |
|
|
445 | 370 | |
|
|
446 | 371 | shape = [nChannels, nHeis] |
|
|
447 | 372 | |
|
|
448 | 373 | Si self.getByBlock == True: |
|
|
449 | 374 | |
|
|
450 | 375 | self.dataOut.data = buffer[:, :, :] |
|
|
451 | 376 | |
|
|
452 | 377 | shape = [nChannels, nProfiles, nHeis] |
|
|
453 | 378 | |
|
|
454 | 379 | Variables afectadas: |
|
|
455 | 380 | self.dataOut |
|
|
456 | 381 | self.profileIndex |
|
|
457 | 382 | |
|
|
458 | 383 | Affected: |
|
|
459 | 384 | self.dataOut |
|
|
460 | 385 | self.profileIndex |
|
|
461 | 386 | self.flagDiscontinuousBlock |
|
|
462 | 387 | self.flagIsNewBlock |
|
|
463 | 388 | """ |
|
|
464 | 389 | if self.flagNoMoreFiles: |
|
|
465 | 390 | self.dataOut.flagNoData = True |
|
|
466 | 391 | return 0 |
|
|
467 | 392 | self.flagDiscontinuousBlock = 0 |
|
|
468 | 393 | self.flagIsNewBlock = 0 |
|
|
469 | 394 | if self.__hasNotDataInBuffer(): |
|
|
470 | 395 | if not(self.readNextBlock()): |
|
|
471 | 396 | return 0 |
|
|
472 | 397 | |
|
|
473 | 398 | self.getFirstHeader() |
|
|
474 | 399 | |
|
|
475 | 400 | self.reshapeData() |
|
|
476 | 401 | if self.datablock is None: |
|
|
477 | 402 | self.dataOut.flagNoData = True |
|
|
478 | 403 | return 0 |
|
|
479 | 404 | |
|
|
480 | 405 | if not self.getByBlock: |
|
|
481 | 406 | |
|
|
482 | 407 | """ |
|
|
483 | 408 | Return profile by profile |
|
|
484 | 409 | |
|
|
485 | 410 | If nTxs > 1 then one profile is divided by nTxs and number of total |
|
|
486 | 411 | blocks is increased by nTxs (nProfiles *= nTxs) |
|
|
487 | 412 | """ |
|
|
488 | 413 | self.dataOut.flagDataAsBlock = False |
|
|
489 | 414 | self.dataOut.data = self.datablock[:, self.profileIndex, :] |
|
|
490 | 415 | self.dataOut.profileIndex = self.profileIndex |
|
|
491 | 416 | |
|
|
492 | 417 | self.profileIndex += 1 |
|
|
493 | 418 | |
|
|
494 | 419 | else: |
|
|
495 | 420 | """ |
|
|
496 | 421 | Return a block |
|
|
497 | 422 | """ |
|
|
498 | 423 | if self.selBlocksize == None: |
|
|
499 | 424 | self.selBlocksize = self.dataOut.nProfiles |
|
|
500 | 425 | if self.selBlocktime != None: |
|
|
501 | 426 | if self.dataOut.nCohInt is not None: |
|
|
502 | 427 | nCohInt = self.dataOut.nCohInt |
|
|
503 | 428 | else: |
|
|
504 | 429 | nCohInt = 1 |
|
|
505 | 430 | self.selBlocksize = int(self.dataOut.nProfiles * round(self.selBlocktime / ( |
|
|
506 | 431 | nCohInt * self.dataOut.ippSeconds * self.dataOut.nProfiles))) |
|
|
507 | 432 | |
|
|
508 | 433 | self.dataOut.data = self.datablock[:, |
|
|
509 | 434 | self.profileIndex:self.profileIndex + self.selBlocksize, :] |
|
|
510 | 435 | self.profileIndex += self.selBlocksize |
|
|
511 | 436 | datasize = self.dataOut.data.shape[1] |
|
|
512 | 437 | |
|
|
513 | 438 | if datasize < self.selBlocksize: |
|
|
514 | 439 | buffer = numpy.zeros( |
|
|
515 | 440 | (self.dataOut.data.shape[0], self.selBlocksize, self.dataOut.data.shape[2]), dtype='complex') |
|
|
516 | 441 | buffer[:, :datasize, :] = self.dataOut.data |
|
|
517 | 442 | |
|
|
518 | 443 | while datasize < self.selBlocksize: # Not enough profiles to fill the block |
|
|
519 | 444 | if not(self.readNextBlock()): |
|
|
520 | 445 | return 0 |
|
|
521 | 446 | self.getFirstHeader() |
|
|
522 | 447 | self.reshapeData() |
|
|
523 | 448 | if self.datablock is None: |
|
|
524 | 449 | self.dataOut.flagNoData = True |
|
|
525 | 450 | return 0 |
|
|
526 | 451 | # stack data |
|
|
527 | 452 | blockIndex = self.selBlocksize - datasize |
|
|
528 | 453 | datablock1 = self.datablock[:, :blockIndex, :] |
|
|
529 | 454 | |
|
|
530 | 455 | buffer[:, datasize:datasize + |
|
|
531 | 456 | datablock1.shape[1], :] = datablock1 |
|
|
532 | 457 | datasize += datablock1.shape[1] |
|
|
533 | 458 | |
|
|
534 | 459 | self.dataOut.data = buffer |
|
|
535 | 460 | self.profileIndex = blockIndex |
|
|
536 | 461 | |
|
|
537 | 462 | self.dataOut.flagDataAsBlock = True |
|
|
538 | 463 | self.dataOut.nProfiles = self.dataOut.data.shape[1] |
|
|
539 | 464 | |
|
|
540 | 465 | self.dataOut.flagNoData = False |
|
|
541 | 466 | |
|
|
542 | 467 | self.getBasicHeader() |
|
|
543 | 468 | |
|
|
544 | 469 | self.dataOut.realtime = self.online |
|
|
545 | 470 | |
|
|
546 | 471 | return self.dataOut.data |
|
|
547 | 472 | |
|
|
473 | ||
|
|
548 | 474 | @MPDecorator |
|
|
549 | 475 | class VoltageWriter(JRODataWriter, Operation): |
|
|
550 | 476 | """ |
|
|
551 | 477 | Esta clase permite escribir datos de voltajes a archivos procesados (.r). La escritura |
|
|
552 | 478 | de los datos siempre se realiza por bloques. |
|
|
553 | 479 | """ |
|
|
554 | 480 | |
|
|
555 | 481 | ext = ".r" |
|
|
556 | 482 | |
|
|
557 | 483 | optchar = "D" |
|
|
558 | 484 | |
|
|
559 | 485 | shapeBuffer = None |
|
|
560 | 486 | |
|
|
561 | 487 | def __init__(self):#, **kwargs): |
|
|
562 | 488 | """ |
|
|
563 | 489 | Inicializador de la clase VoltageWriter para la escritura de datos de espectros. |
|
|
564 | 490 | |
|
|
565 | 491 | Affected: |
|
|
566 | 492 | self.dataOut |
|
|
567 | 493 | |
|
|
568 | 494 | Return: None |
|
|
569 | 495 | """ |
|
|
570 | 496 | Operation.__init__(self)#, **kwargs) |
|
|
571 | 497 | |
|
|
572 | 498 | self.nTotalBlocks = 0 |
|
|
573 | 499 | |
|
|
574 | 500 | self.profileIndex = 0 |
|
|
575 | 501 | |
|
|
576 | 502 | self.isConfig = False |
|
|
577 | 503 | |
|
|
578 | 504 | self.fp = None |
|
|
579 | 505 | |
|
|
580 | 506 | self.flagIsNewFile = 1 |
|
|
581 | 507 | |
|
|
582 | 508 | self.blockIndex = 0 |
|
|
583 | 509 | |
|
|
584 | 510 | self.flagIsNewBlock = 0 |
|
|
585 | 511 | |
|
|
586 | 512 | self.setFile = None |
|
|
587 | 513 | |
|
|
588 | 514 | self.dtype = None |
|
|
589 | 515 | |
|
|
590 | 516 | self.path = None |
|
|
591 | 517 | |
|
|
592 | 518 | self.filename = None |
|
|
593 | 519 | |
|
|
594 | 520 | self.basicHeaderObj = BasicHeader(LOCALTIME) |
|
|
595 | 521 | |
|
|
596 | 522 | self.systemHeaderObj = SystemHeader() |
|
|
597 | 523 | |
|
|
598 | 524 | self.radarControllerHeaderObj = RadarControllerHeader() |
|
|
599 | 525 | |
|
|
600 | 526 | self.processingHeaderObj = ProcessingHeader() |
|
|
601 | 527 | |
|
|
602 | 528 | def hasAllDataInBuffer(self): |
|
|
603 | 529 | if self.profileIndex >= self.processingHeaderObj.profilesPerBlock: |
|
|
604 | 530 | return 1 |
|
|
605 | 531 | return 0 |
|
|
606 | 532 | |
|
|
607 | 533 | def setBlockDimension(self): |
|
|
608 | 534 | """ |
|
|
609 | 535 | Obtiene las formas dimensionales del los subbloques de datos que componen un bloque |
|
|
610 | 536 | |
|
|
611 | 537 | Affected: |
|
|
612 | 538 | self.shape_spc_Buffer |
|
|
613 | 539 | self.shape_cspc_Buffer |
|
|
614 | 540 | self.shape_dc_Buffer |
|
|
615 | 541 | |
|
|
616 | 542 | Return: None |
|
|
617 | 543 | """ |
|
|
618 | 544 | self.shapeBuffer = (self.processingHeaderObj.profilesPerBlock, |
|
|
619 | 545 | self.processingHeaderObj.nHeights, |
|
|
620 | 546 | self.systemHeaderObj.nChannels) |
|
|
621 | 547 | |
|
|
622 | 548 | self.datablock = numpy.zeros((self.systemHeaderObj.nChannels, |
|
|
623 | 549 | self.processingHeaderObj.profilesPerBlock, |
|
|
624 | 550 | self.processingHeaderObj.nHeights), |
|
|
625 | 551 | dtype=numpy.dtype('complex64')) |
|
|
626 | 552 | |
|
|
627 | 553 | def writeBlock(self): |
|
|
628 | 554 | """ |
|
|
629 | 555 | Escribe el buffer en el file designado |
|
|
630 | 556 | |
|
|
631 | 557 | Affected: |
|
|
632 | 558 | self.profileIndex |
|
|
633 | 559 | self.flagIsNewFile |
|
|
634 | 560 | self.flagIsNewBlock |
|
|
635 | 561 | self.nTotalBlocks |
|
|
636 | 562 | self.blockIndex |
|
|
637 | 563 | |
|
|
638 | 564 | Return: None |
|
|
639 | 565 | """ |
|
|
640 | 566 | data = numpy.zeros(self.shapeBuffer, self.dtype) |
|
|
641 | 567 | |
|
|
642 | 568 | junk = numpy.transpose(self.datablock, (1, 2, 0)) |
|
|
643 | 569 | |
|
|
644 | 570 | data['real'] = junk.real |
|
|
645 | 571 | data['imag'] = junk.imag |
|
|
646 | 572 | |
|
|
647 | 573 | data = data.reshape((-1)) |
|
|
648 | 574 | |
|
|
649 | 575 | data.tofile(self.fp) |
|
|
650 | 576 | |
|
|
651 | 577 | self.datablock.fill(0) |
|
|
652 | 578 | |
|
|
653 | 579 | self.profileIndex = 0 |
|
|
654 | 580 | self.flagIsNewFile = 0 |
|
|
655 | 581 | self.flagIsNewBlock = 1 |
|
|
656 | 582 | |
|
|
657 | 583 | self.blockIndex += 1 |
|
|
658 | 584 | self.nTotalBlocks += 1 |
|
|
659 | 585 | |
|
|
660 | 586 | # print "[Writing] Block = %04d" %self.blockIndex |
|
|
661 | 587 | |
|
|
662 | 588 | def putData(self): |
|
|
663 | 589 | """ |
|
|
664 | 590 | Setea un bloque de datos y luego los escribe en un file |
|
|
665 | 591 | |
|
|
666 | 592 | Affected: |
|
|
667 | 593 | self.flagIsNewBlock |
|
|
668 | 594 | self.profileIndex |
|
|
669 | 595 | |
|
|
670 | 596 | Return: |
|
|
671 | 597 | 0 : Si no hay data o no hay mas files que puedan escribirse |
|
|
672 | 598 | 1 : Si se escribio la data de un bloque en un file |
|
|
673 | 599 | """ |
|
|
674 | 600 | if self.dataOut.flagNoData: |
|
|
675 | 601 | return 0 |
|
|
676 | 602 | |
|
|
677 | 603 | self.flagIsNewBlock = 0 |
|
|
678 | 604 | |
|
|
679 | 605 | if self.dataOut.flagDiscontinuousBlock: |
|
|
680 | 606 | self.datablock.fill(0) |
|
|
681 | 607 | self.profileIndex = 0 |
|
|
682 | 608 | self.setNextFile() |
|
|
683 | 609 | |
|
|
684 | 610 | if self.profileIndex == 0: |
|
|
685 | 611 | self.setBasicHeader() |
|
|
686 | 612 | |
|
|
687 | 613 | self.datablock[:, self.profileIndex, :] = self.dataOut.data |
|
|
688 | 614 | |
|
|
689 | 615 | self.profileIndex += 1 |
|
|
690 | 616 | |
|
|
691 | 617 | if self.hasAllDataInBuffer(): |
|
|
692 | 618 | # if self.flagIsNewFile: |
|
|
693 | 619 | self.writeNextBlock() |
|
|
694 | 620 | # self.setFirstHeader() |
|
|
695 | 621 | |
|
|
696 | 622 | return 1 |
|
|
697 | 623 | |
|
|
698 | 624 | def __getBlockSize(self): |
|
|
699 | 625 | ''' |
|
|
700 | 626 | Este metodos determina el cantidad de bytes para un bloque de datos de tipo Voltage |
|
|
701 | 627 | ''' |
|
|
702 | 628 | |
|
|
703 | 629 | dtype_width = self.getDtypeWidth() |
|
|
704 | 630 | |
|
|
705 | 631 | blocksize = int(self.dataOut.nHeights * self.dataOut.nChannels * |
|
|
706 | 632 | self.profilesPerBlock * dtype_width * 2) |
|
|
707 | 633 | |
|
|
708 | 634 | return blocksize |
|
|
709 | 635 | |
|
|
710 | 636 | def setFirstHeader(self): |
|
|
711 | 637 | """ |
|
|
712 | 638 | Obtiene una copia del First Header |
|
|
713 | 639 | |
|
|
714 | 640 | Affected: |
|
|
715 | 641 | self.systemHeaderObj |
|
|
716 | 642 | self.radarControllerHeaderObj |
|
|
717 | 643 | self.dtype |
|
|
718 | 644 | |
|
|
719 | 645 | Return: |
|
|
720 | 646 | None |
|
|
721 | 647 | """ |
|
|
722 | 648 | |
|
|
723 | 649 | self.systemHeaderObj = self.dataOut.systemHeaderObj.copy() |
|
|
724 | 650 | self.systemHeaderObj.nChannels = self.dataOut.nChannels |
|
|
725 | 651 | self.radarControllerHeaderObj = self.dataOut.radarControllerHeaderObj.copy() |
|
|
726 | 652 | |
|
|
727 | 653 | self.processingHeaderObj.dtype = 0 # Voltage |
|
|
728 | 654 | self.processingHeaderObj.blockSize = self.__getBlockSize() |
|
|
729 | 655 | self.processingHeaderObj.profilesPerBlock = self.profilesPerBlock |
|
|
730 | 656 | self.processingHeaderObj.dataBlocksPerFile = self.blocksPerFile |
|
|
731 | 657 | # podria ser 1 o self.dataOut.processingHeaderObj.nWindows |
|
|
732 | 658 | self.processingHeaderObj.nWindows = 1 |
|
|
733 | 659 | self.processingHeaderObj.nCohInt = self.dataOut.nCohInt |
|
|
734 | 660 | # Cuando la data de origen es de tipo Voltage |
|
|
735 | 661 | self.processingHeaderObj.nIncohInt = 1 |
|
|
736 | 662 | # Cuando la data de origen es de tipo Voltage |
|
|
737 | 663 | self.processingHeaderObj.totalSpectra = 0 |
|
|
738 | 664 | |
|
|
739 | 665 | if self.dataOut.code is not None: |
|
|
740 | 666 | self.processingHeaderObj.code = self.dataOut.code |
|
|
741 | 667 | self.processingHeaderObj.nCode = self.dataOut.nCode |
|
|
742 | 668 | self.processingHeaderObj.nBaud = self.dataOut.nBaud |
|
|
743 | 669 | |
|
|
744 | 670 | if self.processingHeaderObj.nWindows != 0: |
|
|
745 | 671 | self.processingHeaderObj.firstHeight = self.dataOut.heightList[0] |
|
|
746 | 672 | self.processingHeaderObj.deltaHeight = self.dataOut.heightList[1] - \ |
|
|
747 | 673 | self.dataOut.heightList[0] |
|
|
748 | 674 | self.processingHeaderObj.nHeights = self.dataOut.nHeights |
|
|
749 | 675 | self.processingHeaderObj.samplesWin = self.dataOut.nHeights |
|
|
750 | 676 | |
|
|
751 | 677 | self.processingHeaderObj.processFlags = self.getProcessFlags() |
|
|
752 | 678 | |
|
|
753 | 679 | self.setBasicHeader() |
|
|
754 | 680 | No newline at end of file |
|
|
1 | NO CONTENT: file was removed |
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