@@ -1,648 +1,648 | |||||
1 | import os |
|
1 | import os | |
2 | import time |
|
2 | import time | |
3 | import datetime |
|
3 | import datetime | |
4 |
|
4 | |||
5 | import numpy |
|
5 | import numpy | |
6 | import h5py |
|
6 | import h5py | |
7 |
|
7 | |||
8 | import schainpy.admin |
|
8 | import schainpy.admin | |
9 | from schainpy.model.data.jrodata import * |
|
9 | from schainpy.model.data.jrodata import * | |
10 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator |
|
10 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator | |
11 | from schainpy.model.io.jroIO_base import * |
|
11 | from schainpy.model.io.jroIO_base import * | |
12 | from schainpy.utils import log |
|
12 | from schainpy.utils import log | |
13 |
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13 | |||
14 |
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14 | |||
15 | class HDFReader(Reader, ProcessingUnit): |
|
15 | class HDFReader(Reader, ProcessingUnit): | |
16 | """Processing unit to read HDF5 format files |
|
16 | """Processing unit to read HDF5 format files | |
17 |
|
17 | |||
18 | This unit reads HDF5 files created with `HDFWriter` operation contains |
|
18 | This unit reads HDF5 files created with `HDFWriter` operation contains | |
19 | by default two groups Data and Metadata all variables would be saved as `dataOut` |
|
19 | by default two groups Data and Metadata all variables would be saved as `dataOut` | |
20 | attributes. |
|
20 | attributes. | |
21 | It is possible to read any HDF5 file by given the structure in the `description` |
|
21 | It is possible to read any HDF5 file by given the structure in the `description` | |
22 | parameter, also you can add extra values to metadata with the parameter `extras`. |
|
22 | parameter, also you can add extra values to metadata with the parameter `extras`. | |
23 |
|
23 | |||
24 | Parameters: |
|
24 | Parameters: | |
25 | ----------- |
|
25 | ----------- | |
26 | path : str |
|
26 | path : str | |
27 | Path where files are located. |
|
27 | Path where files are located. | |
28 | startDate : date |
|
28 | startDate : date | |
29 | Start date of the files |
|
29 | Start date of the files | |
30 | endDate : list |
|
30 | endDate : list | |
31 | End date of the files |
|
31 | End date of the files | |
32 | startTime : time |
|
32 | startTime : time | |
33 | Start time of the files |
|
33 | Start time of the files | |
34 | endTime : time |
|
34 | endTime : time | |
35 | End time of the files |
|
35 | End time of the files | |
36 | description : dict, optional |
|
36 | description : dict, optional | |
37 | Dictionary with the description of the HDF5 file |
|
37 | Dictionary with the description of the HDF5 file | |
38 | extras : dict, optional |
|
38 | extras : dict, optional | |
39 | Dictionary with extra metadata to be be added to `dataOut` |
|
39 | Dictionary with extra metadata to be be added to `dataOut` | |
40 |
|
40 | |||
41 | Examples |
|
41 | Examples | |
42 | -------- |
|
42 | -------- | |
43 |
|
43 | |||
44 | desc = { |
|
44 | desc = { | |
45 | 'Data': { |
|
45 | 'Data': { | |
46 | 'data_output': ['u', 'v', 'w'], |
|
46 | 'data_output': ['u', 'v', 'w'], | |
47 | 'utctime': 'timestamps', |
|
47 | 'utctime': 'timestamps', | |
48 | } , |
|
48 | } , | |
49 | 'Metadata': { |
|
49 | 'Metadata': { | |
50 | 'heightList': 'heights' |
|
50 | 'heightList': 'heights' | |
51 | } |
|
51 | } | |
52 | } |
|
52 | } | |
53 |
|
53 | |||
54 | desc = { |
|
54 | desc = { | |
55 | 'Data': { |
|
55 | 'Data': { | |
56 | 'data_output': 'winds', |
|
56 | 'data_output': 'winds', | |
57 | 'utctime': 'timestamps' |
|
57 | 'utctime': 'timestamps' | |
58 | }, |
|
58 | }, | |
59 | 'Metadata': { |
|
59 | 'Metadata': { | |
60 | 'heightList': 'heights' |
|
60 | 'heightList': 'heights' | |
61 | } |
|
61 | } | |
62 | } |
|
62 | } | |
63 |
|
63 | |||
64 | extras = { |
|
64 | extras = { | |
65 | 'timeZone': 300 |
|
65 | 'timeZone': 300 | |
66 | } |
|
66 | } | |
67 |
|
67 | |||
68 | reader = project.addReadUnit( |
|
68 | reader = project.addReadUnit( | |
69 | name='HDFReader', |
|
69 | name='HDFReader', | |
70 | path='/path/to/files', |
|
70 | path='/path/to/files', | |
71 | startDate='2019/01/01', |
|
71 | startDate='2019/01/01', | |
72 | endDate='2019/01/31', |
|
72 | endDate='2019/01/31', | |
73 | startTime='00:00:00', |
|
73 | startTime='00:00:00', | |
74 | endTime='23:59:59', |
|
74 | endTime='23:59:59', | |
75 | # description=json.dumps(desc), |
|
75 | # description=json.dumps(desc), | |
76 | # extras=json.dumps(extras), |
|
76 | # extras=json.dumps(extras), | |
77 | ) |
|
77 | ) | |
78 |
|
78 | |||
79 | """ |
|
79 | """ | |
80 |
|
80 | |||
81 | __attrs__ = ['path', 'startDate', 'endDate', 'startTime', 'endTime', 'description', 'extras'] |
|
81 | __attrs__ = ['path', 'startDate', 'endDate', 'startTime', 'endTime', 'description', 'extras'] | |
82 |
|
82 | |||
83 | def __init__(self): |
|
83 | def __init__(self): | |
84 | ProcessingUnit.__init__(self) |
|
84 | ProcessingUnit.__init__(self) | |
85 | self.dataOut = Parameters() |
|
85 | self.dataOut = Parameters() | |
86 | self.ext = ".hdf5" |
|
86 | self.ext = ".hdf5" | |
87 | self.optchar = "D" |
|
87 | self.optchar = "D" | |
88 | self.meta = {} |
|
88 | self.meta = {} | |
89 | self.data = {} |
|
89 | self.data = {} | |
90 | self.open_file = h5py.File |
|
90 | self.open_file = h5py.File | |
91 | self.open_mode = 'r' |
|
91 | self.open_mode = 'r' | |
92 | self.description = {} |
|
92 | self.description = {} | |
93 | self.extras = {} |
|
93 | self.extras = {} | |
94 | self.filefmt = "*%Y%j***" |
|
94 | self.filefmt = "*%Y%j***" | |
95 | self.folderfmt = "*%Y%j" |
|
95 | self.folderfmt = "*%Y%j" | |
96 |
|
96 | |||
97 | def setup(self, **kwargs): |
|
97 | def setup(self, **kwargs): | |
98 | self.set_kwargs(**kwargs) |
|
98 | self.set_kwargs(**kwargs) | |
99 | if not self.ext.startswith('.'): |
|
99 | if not self.ext.startswith('.'): | |
100 | self.ext = '.{}'.format(self.ext) |
|
100 | self.ext = '.{}'.format(self.ext) | |
101 |
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101 | |||
102 | if self.online: |
|
102 | if self.online: | |
103 | log.log("Searching files in online mode...", self.name) |
|
103 | log.log("Searching files in online mode...", self.name) | |
104 |
|
104 | |||
105 | for nTries in range(self.nTries): |
|
105 | for nTries in range(self.nTries): | |
106 | fullpath = self.searchFilesOnLine(self.path, self.startDate, |
|
106 | fullpath = self.searchFilesOnLine(self.path, self.startDate, | |
107 | self.endDate, self.expLabel, self.ext, self.walk, |
|
107 | self.endDate, self.expLabel, self.ext, self.walk, | |
108 | self.filefmt, self.folderfmt) |
|
108 | self.filefmt, self.folderfmt) | |
109 | try: |
|
109 | try: | |
110 | fullpath = next(fullpath) |
|
110 | fullpath = next(fullpath) | |
111 | except: |
|
111 | except: | |
112 | fullpath = None |
|
112 | fullpath = None | |
113 |
|
113 | |||
114 | if fullpath: |
|
114 | if fullpath: | |
115 | break |
|
115 | break | |
116 |
|
116 | |||
117 | log.warning( |
|
117 | log.warning( | |
118 | 'Waiting {} sec for a valid file in {}: try {} ...'.format( |
|
118 | 'Waiting {} sec for a valid file in {}: try {} ...'.format( | |
119 | self.delay, self.path, nTries + 1), |
|
119 | self.delay, self.path, nTries + 1), | |
120 | self.name) |
|
120 | self.name) | |
121 | time.sleep(self.delay) |
|
121 | time.sleep(self.delay) | |
122 |
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122 | |||
123 | if not(fullpath): |
|
123 | if not(fullpath): | |
124 | raise schainpy.admin.SchainError( |
|
124 | raise schainpy.admin.SchainError( | |
125 | 'There isn\'t any valid file in {}'.format(self.path)) |
|
125 | 'There isn\'t any valid file in {}'.format(self.path)) | |
126 |
|
126 | |||
127 | pathname, filename = os.path.split(fullpath) |
|
127 | pathname, filename = os.path.split(fullpath) | |
128 | self.year = int(filename[1:5]) |
|
128 | self.year = int(filename[1:5]) | |
129 | self.doy = int(filename[5:8]) |
|
129 | self.doy = int(filename[5:8]) | |
130 | self.set = int(filename[8:11]) - 1 |
|
130 | self.set = int(filename[8:11]) - 1 | |
131 | else: |
|
131 | else: | |
132 | log.log("Searching files in {}".format(self.path), self.name) |
|
132 | log.log("Searching files in {}".format(self.path), self.name) | |
133 | self.filenameList = self.searchFilesOffLine(self.path, self.startDate, |
|
133 | self.filenameList = self.searchFilesOffLine(self.path, self.startDate, | |
134 | self.endDate, self.expLabel, self.ext, self.walk, self.filefmt, self.folderfmt) |
|
134 | self.endDate, self.expLabel, self.ext, self.walk, self.filefmt, self.folderfmt) | |
135 | self.setNextFile() |
|
135 | self.setNextFile() | |
136 |
|
136 | |||
137 | return |
|
137 | return | |
138 |
|
138 | |||
139 | def readFirstHeader(self): |
|
139 | def readFirstHeader(self): | |
140 | '''Read metadata and data''' |
|
140 | '''Read metadata and data''' | |
141 |
|
141 | |||
142 | self.__readMetadata() |
|
142 | self.__readMetadata() | |
143 | self.__readData() |
|
143 | self.__readData() | |
144 | self.__setBlockList() |
|
144 | self.__setBlockList() | |
145 |
|
145 | |||
146 | if 'type' in self.meta: |
|
146 | if 'type' in self.meta: | |
147 | self.dataOut = eval(self.meta['type'])() |
|
147 | self.dataOut = eval(self.meta['type'])() | |
148 |
|
148 | |||
149 | for attr in self.meta: |
|
149 | for attr in self.meta: | |
150 | setattr(self.dataOut, attr, self.meta[attr]) |
|
150 | setattr(self.dataOut, attr, self.meta[attr]) | |
151 |
|
151 | |||
152 | self.blockIndex = 0 |
|
152 | self.blockIndex = 0 | |
153 |
|
153 | |||
154 | return |
|
154 | return | |
155 |
|
155 | |||
156 | def __setBlockList(self): |
|
156 | def __setBlockList(self): | |
157 | ''' |
|
157 | ''' | |
158 | Selects the data within the times defined |
|
158 | Selects the data within the times defined | |
159 |
|
159 | |||
160 | self.fp |
|
160 | self.fp | |
161 | self.startTime |
|
161 | self.startTime | |
162 | self.endTime |
|
162 | self.endTime | |
163 | self.blockList |
|
163 | self.blockList | |
164 | self.blocksPerFile |
|
164 | self.blocksPerFile | |
165 |
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165 | |||
166 | ''' |
|
166 | ''' | |
167 |
|
167 | |||
168 | startTime = self.startTime |
|
168 | startTime = self.startTime | |
169 | endTime = self.endTime |
|
169 | endTime = self.endTime | |
170 |
|
170 | |||
171 | thisUtcTime = self.data['utctime'] |
|
171 | thisUtcTime = self.data['utctime'] | |
172 | self.interval = numpy.min(thisUtcTime[1:] - thisUtcTime[:-1]) |
|
172 | self.interval = numpy.min(thisUtcTime[1:] - thisUtcTime[:-1]) | |
173 |
|
173 | |||
174 | thisDatetime = datetime.datetime.utcfromtimestamp(thisUtcTime[0]) |
|
174 | thisDatetime = datetime.datetime.utcfromtimestamp(thisUtcTime[0]) | |
175 |
|
175 | |||
176 | thisDate = thisDatetime.date() |
|
176 | thisDate = thisDatetime.date() | |
177 | thisTime = thisDatetime.time() |
|
177 | thisTime = thisDatetime.time() | |
178 |
|
178 | |||
179 | startUtcTime = (datetime.datetime.combine(thisDate, startTime) - datetime.datetime(1970, 1, 1)).total_seconds() |
|
179 | startUtcTime = (datetime.datetime.combine(thisDate, startTime) - datetime.datetime(1970, 1, 1)).total_seconds() | |
180 | endUtcTime = (datetime.datetime.combine(thisDate, endTime) - datetime.datetime(1970, 1, 1)).total_seconds() |
|
180 | endUtcTime = (datetime.datetime.combine(thisDate, endTime) - datetime.datetime(1970, 1, 1)).total_seconds() | |
181 |
|
181 | |||
182 | ind = numpy.where(numpy.logical_and(thisUtcTime >= startUtcTime, thisUtcTime < endUtcTime))[0] |
|
182 | ind = numpy.where(numpy.logical_and(thisUtcTime >= startUtcTime, thisUtcTime < endUtcTime))[0] | |
183 |
|
183 | |||
184 | self.blockList = ind |
|
184 | self.blockList = ind | |
185 | self.blocksPerFile = len(ind) |
|
185 | self.blocksPerFile = len(ind) | |
186 | return |
|
186 | return | |
187 |
|
187 | |||
188 | def __readMetadata(self): |
|
188 | def __readMetadata(self): | |
189 | ''' |
|
189 | ''' | |
190 | Reads Metadata |
|
190 | Reads Metadata | |
191 | ''' |
|
191 | ''' | |
192 |
|
192 | |||
193 | meta = {} |
|
193 | meta = {} | |
194 |
|
194 | |||
195 | desc = { |
|
195 | desc = { | |
196 | 'Data': { |
|
196 | 'Data': { | |
197 |
'dataPP_POW': 'Data/dataPP_POW/ |
|
197 | 'dataPP_POW': 'Data/dataPP_POW/channel00', | |
198 | 'utctime':'Data/utctime' |
|
198 | 'utctime':'Data/utctime' | |
199 | }, |
|
199 | }, | |
200 | 'Metadata': { |
|
200 | 'Metadata': { | |
201 | 'azimuth' :'Metadata/azimuth', |
|
201 | 'azimuth' :'Metadata/azimuth', | |
202 | 'heightList' :'Metadata/heightList', |
|
202 | 'heightList' :'Metadata/heightList', | |
203 | 'flagDataAsBlock':'Metadata/flagDataAsBlock' |
|
203 | 'flagDataAsBlock':'Metadata/flagDataAsBlock' | |
204 | } |
|
204 | } | |
205 | } |
|
205 | } | |
206 |
|
206 | |||
207 | self.description = desc |
|
207 | self.description = desc | |
208 | if self.description: |
|
208 | if self.description: | |
209 | for key, value in self.description['Metadata'].items(): |
|
209 | for key, value in self.description['Metadata'].items(): | |
210 | try: |
|
210 | try: | |
211 | meta[key] = self.fp[value].value |
|
211 | meta[key] = self.fp[value].value | |
212 | except: |
|
212 | except: | |
213 | meta[key] = self.fp[value][()] |
|
213 | meta[key] = self.fp[value][()] | |
214 | else: |
|
214 | else: | |
215 | grp = self.fp['Metadata'] |
|
215 | grp = self.fp['Metadata'] | |
216 | for name in grp: |
|
216 | for name in grp: | |
217 | meta[name] = grp[name].value |
|
217 | meta[name] = grp[name].value | |
218 |
|
218 | |||
219 | if self.extras: |
|
219 | if self.extras: | |
220 | for key, value in self.extras.items(): |
|
220 | for key, value in self.extras.items(): | |
221 | meta[key] = value |
|
221 | meta[key] = value | |
222 | self.meta = meta |
|
222 | self.meta = meta | |
223 |
|
223 | |||
224 | return |
|
224 | return | |
225 |
|
225 | |||
226 | def __readData(self): |
|
226 | def __readData(self): | |
227 |
|
227 | |||
228 | data = {} |
|
228 | data = {} | |
229 |
|
229 | |||
230 | if self.description: |
|
230 | if self.description: | |
231 | for key, value in self.description['Data'].items(): |
|
231 | for key, value in self.description['Data'].items(): | |
232 | if isinstance(value, str): |
|
232 | if isinstance(value, str): | |
233 | if isinstance(self.fp[value], h5py.Dataset): |
|
233 | if isinstance(self.fp[value], h5py.Dataset): | |
234 | try: |
|
234 | try: | |
235 | data[key] = self.fp[value].value |
|
235 | data[key] = self.fp[value].value | |
236 | except: |
|
236 | except: | |
237 | ndim= self.fp[value][()].ndim |
|
237 | ndim= self.fp[value][()].ndim | |
238 | if ndim==2: |
|
238 | if ndim==2: | |
239 | data[key] = numpy.swapaxes(self.fp[value][()],0,1) |
|
239 | data[key] = numpy.swapaxes(self.fp[value][()],0,1) | |
240 | if ndim==1: |
|
240 | if ndim==1: | |
241 | data[key] = self.fp[value][()] |
|
241 | data[key] = self.fp[value][()] | |
242 | elif isinstance(self.fp[value], h5py.Group): |
|
242 | elif isinstance(self.fp[value], h5py.Group): | |
243 | array = [] |
|
243 | array = [] | |
244 | for ch in self.fp[value]: |
|
244 | for ch in self.fp[value]: | |
245 | array.append(self.fp[value][ch].value) |
|
245 | array.append(self.fp[value][ch].value) | |
246 | data[key] = numpy.array(array) |
|
246 | data[key] = numpy.array(array) | |
247 | elif isinstance(value, list): |
|
247 | elif isinstance(value, list): | |
248 | array = [] |
|
248 | array = [] | |
249 | for ch in value: |
|
249 | for ch in value: | |
250 | array.append(self.fp[ch].value) |
|
250 | array.append(self.fp[ch].value) | |
251 | data[key] = numpy.array(array) |
|
251 | data[key] = numpy.array(array) | |
252 | else: |
|
252 | else: | |
253 | grp = self.fp['Data'] |
|
253 | grp = self.fp['Data'] | |
254 | for name in grp: |
|
254 | for name in grp: | |
255 | if isinstance(grp[name], h5py.Dataset): |
|
255 | if isinstance(grp[name], h5py.Dataset): | |
256 | array = grp[name].value |
|
256 | array = grp[name].value | |
257 | elif isinstance(grp[name], h5py.Group): |
|
257 | elif isinstance(grp[name], h5py.Group): | |
258 | array = [] |
|
258 | array = [] | |
259 | for ch in grp[name]: |
|
259 | for ch in grp[name]: | |
260 | array.append(grp[name][ch].value) |
|
260 | array.append(grp[name][ch].value) | |
261 | array = numpy.array(array) |
|
261 | array = numpy.array(array) | |
262 | else: |
|
262 | else: | |
263 | log.warning('Unknown type: {}'.format(name)) |
|
263 | log.warning('Unknown type: {}'.format(name)) | |
264 |
|
264 | |||
265 | if name in self.description: |
|
265 | if name in self.description: | |
266 | key = self.description[name] |
|
266 | key = self.description[name] | |
267 | else: |
|
267 | else: | |
268 | key = name |
|
268 | key = name | |
269 | data[key] = array |
|
269 | data[key] = array | |
270 |
|
270 | |||
271 | self.data = data |
|
271 | self.data = data | |
272 | return |
|
272 | return | |
273 |
|
273 | |||
274 | def getData(self): |
|
274 | def getData(self): | |
275 |
|
275 | |||
276 | for attr in self.data: |
|
276 | for attr in self.data: | |
277 | if self.data[attr].ndim == 1: |
|
277 | if self.data[attr].ndim == 1: | |
278 | setattr(self.dataOut, attr, self.data[attr][self.blockIndex]) |
|
278 | setattr(self.dataOut, attr, self.data[attr][self.blockIndex]) | |
279 | else: |
|
279 | else: | |
280 | setattr(self.dataOut, attr, self.data[attr][:, self.blockIndex]) |
|
280 | setattr(self.dataOut, attr, self.data[attr][:, self.blockIndex]) | |
281 |
|
281 | |||
282 | self.dataOut.flagNoData = False |
|
282 | self.dataOut.flagNoData = False | |
283 | self.blockIndex += 1 |
|
283 | self.blockIndex += 1 | |
284 |
|
284 | |||
285 | log.log("Block No. {}/{} -> {}".format( |
|
285 | log.log("Block No. {}/{} -> {}".format( | |
286 | self.blockIndex, |
|
286 | self.blockIndex, | |
287 | self.blocksPerFile, |
|
287 | self.blocksPerFile, | |
288 | self.dataOut.datatime.ctime()), self.name) |
|
288 | self.dataOut.datatime.ctime()), self.name) | |
289 |
|
289 | |||
290 | return |
|
290 | return | |
291 |
|
291 | |||
292 | def run(self, **kwargs): |
|
292 | def run(self, **kwargs): | |
293 |
|
293 | |||
294 | if not(self.isConfig): |
|
294 | if not(self.isConfig): | |
295 | self.setup(**kwargs) |
|
295 | self.setup(**kwargs) | |
296 | self.isConfig = True |
|
296 | self.isConfig = True | |
297 |
|
297 | |||
298 | if self.blockIndex == self.blocksPerFile: |
|
298 | if self.blockIndex == self.blocksPerFile: | |
299 | self.setNextFile() |
|
299 | self.setNextFile() | |
300 |
|
300 | |||
301 | self.getData() |
|
301 | self.getData() | |
302 |
|
302 | |||
303 | return |
|
303 | return | |
304 |
|
304 | |||
305 | @MPDecorator |
|
305 | @MPDecorator | |
306 | class HDFWriter(Operation): |
|
306 | class HDFWriter(Operation): | |
307 | """Operation to write HDF5 files. |
|
307 | """Operation to write HDF5 files. | |
308 |
|
308 | |||
309 | The HDF5 file contains by default two groups Data and Metadata where |
|
309 | The HDF5 file contains by default two groups Data and Metadata where | |
310 | you can save any `dataOut` attribute specified by `dataList` and `metadataList` |
|
310 | you can save any `dataOut` attribute specified by `dataList` and `metadataList` | |
311 | parameters, data attributes are normaly time dependent where the metadata |
|
311 | parameters, data attributes are normaly time dependent where the metadata | |
312 | are not. |
|
312 | are not. | |
313 | It is possible to customize the structure of the HDF5 file with the |
|
313 | It is possible to customize the structure of the HDF5 file with the | |
314 | optional description parameter see the examples. |
|
314 | optional description parameter see the examples. | |
315 |
|
315 | |||
316 | Parameters: |
|
316 | Parameters: | |
317 | ----------- |
|
317 | ----------- | |
318 | path : str |
|
318 | path : str | |
319 | Path where files will be saved. |
|
319 | Path where files will be saved. | |
320 | blocksPerFile : int |
|
320 | blocksPerFile : int | |
321 | Number of blocks per file |
|
321 | Number of blocks per file | |
322 | metadataList : list |
|
322 | metadataList : list | |
323 | List of the dataOut attributes that will be saved as metadata |
|
323 | List of the dataOut attributes that will be saved as metadata | |
324 | dataList : int |
|
324 | dataList : int | |
325 | List of the dataOut attributes that will be saved as data |
|
325 | List of the dataOut attributes that will be saved as data | |
326 | setType : bool |
|
326 | setType : bool | |
327 | If True the name of the files corresponds to the timestamp of the data |
|
327 | If True the name of the files corresponds to the timestamp of the data | |
328 | description : dict, optional |
|
328 | description : dict, optional | |
329 | Dictionary with the desired description of the HDF5 file |
|
329 | Dictionary with the desired description of the HDF5 file | |
330 |
|
330 | |||
331 | Examples |
|
331 | Examples | |
332 | -------- |
|
332 | -------- | |
333 |
|
333 | |||
334 | desc = { |
|
334 | desc = { | |
335 | 'data_output': {'winds': ['z', 'w', 'v']}, |
|
335 | 'data_output': {'winds': ['z', 'w', 'v']}, | |
336 | 'utctime': 'timestamps', |
|
336 | 'utctime': 'timestamps', | |
337 | 'heightList': 'heights' |
|
337 | 'heightList': 'heights' | |
338 | } |
|
338 | } | |
339 | desc = { |
|
339 | desc = { | |
340 | 'data_output': ['z', 'w', 'v'], |
|
340 | 'data_output': ['z', 'w', 'v'], | |
341 | 'utctime': 'timestamps', |
|
341 | 'utctime': 'timestamps', | |
342 | 'heightList': 'heights' |
|
342 | 'heightList': 'heights' | |
343 | } |
|
343 | } | |
344 | desc = { |
|
344 | desc = { | |
345 | 'Data': { |
|
345 | 'Data': { | |
346 | 'data_output': 'winds', |
|
346 | 'data_output': 'winds', | |
347 | 'utctime': 'timestamps' |
|
347 | 'utctime': 'timestamps' | |
348 | }, |
|
348 | }, | |
349 | 'Metadata': { |
|
349 | 'Metadata': { | |
350 | 'heightList': 'heights' |
|
350 | 'heightList': 'heights' | |
351 | } |
|
351 | } | |
352 | } |
|
352 | } | |
353 |
|
353 | |||
354 | writer = proc_unit.addOperation(name='HDFWriter') |
|
354 | writer = proc_unit.addOperation(name='HDFWriter') | |
355 | writer.addParameter(name='path', value='/path/to/file') |
|
355 | writer.addParameter(name='path', value='/path/to/file') | |
356 | writer.addParameter(name='blocksPerFile', value='32') |
|
356 | writer.addParameter(name='blocksPerFile', value='32') | |
357 | writer.addParameter(name='metadataList', value='heightList,timeZone') |
|
357 | writer.addParameter(name='metadataList', value='heightList,timeZone') | |
358 | writer.addParameter(name='dataList',value='data_output,utctime') |
|
358 | writer.addParameter(name='dataList',value='data_output,utctime') | |
359 | # writer.addParameter(name='description',value=json.dumps(desc)) |
|
359 | # writer.addParameter(name='description',value=json.dumps(desc)) | |
360 |
|
360 | |||
361 | """ |
|
361 | """ | |
362 |
|
362 | |||
363 | ext = ".hdf5" |
|
363 | ext = ".hdf5" | |
364 | optchar = "D" |
|
364 | optchar = "D" | |
365 | filename = None |
|
365 | filename = None | |
366 | path = None |
|
366 | path = None | |
367 | setFile = None |
|
367 | setFile = None | |
368 | fp = None |
|
368 | fp = None | |
369 | firsttime = True |
|
369 | firsttime = True | |
370 | #Configurations |
|
370 | #Configurations | |
371 | blocksPerFile = None |
|
371 | blocksPerFile = None | |
372 | blockIndex = None |
|
372 | blockIndex = None | |
373 | dataOut = None |
|
373 | dataOut = None | |
374 | #Data Arrays |
|
374 | #Data Arrays | |
375 | dataList = None |
|
375 | dataList = None | |
376 | metadataList = None |
|
376 | metadataList = None | |
377 | currentDay = None |
|
377 | currentDay = None | |
378 | lastTime = None |
|
378 | lastTime = None | |
379 |
|
379 | |||
380 | def __init__(self): |
|
380 | def __init__(self): | |
381 |
|
381 | |||
382 | Operation.__init__(self) |
|
382 | Operation.__init__(self) | |
383 | return |
|
383 | return | |
384 |
|
384 | |||
385 | def setup(self, path=None, blocksPerFile=10, metadataList=None, dataList=None, setType=None, description=None): |
|
385 | def setup(self, path=None, blocksPerFile=10, metadataList=None, dataList=None, setType=None, description=None): | |
386 | self.path = path |
|
386 | self.path = path | |
387 | self.blocksPerFile = blocksPerFile |
|
387 | self.blocksPerFile = blocksPerFile | |
388 | self.metadataList = metadataList |
|
388 | self.metadataList = metadataList | |
389 | self.dataList = [s.strip() for s in dataList] |
|
389 | self.dataList = [s.strip() for s in dataList] | |
390 | self.setType = setType |
|
390 | self.setType = setType | |
391 | self.description = description |
|
391 | self.description = description | |
392 |
|
392 | |||
393 | if self.metadataList is None: |
|
393 | if self.metadataList is None: | |
394 | self.metadataList = self.dataOut.metadata_list |
|
394 | self.metadataList = self.dataOut.metadata_list | |
395 |
|
395 | |||
396 | tableList = [] |
|
396 | tableList = [] | |
397 | dsList = [] |
|
397 | dsList = [] | |
398 |
|
398 | |||
399 | for i in range(len(self.dataList)): |
|
399 | for i in range(len(self.dataList)): | |
400 | dsDict = {} |
|
400 | dsDict = {} | |
401 | if hasattr(self.dataOut, self.dataList[i]): |
|
401 | if hasattr(self.dataOut, self.dataList[i]): | |
402 | dataAux = getattr(self.dataOut, self.dataList[i]) |
|
402 | dataAux = getattr(self.dataOut, self.dataList[i]) | |
403 | dsDict['variable'] = self.dataList[i] |
|
403 | dsDict['variable'] = self.dataList[i] | |
404 | else: |
|
404 | else: | |
405 | log.warning('Attribute {} not found in dataOut', self.name) |
|
405 | log.warning('Attribute {} not found in dataOut', self.name) | |
406 | continue |
|
406 | continue | |
407 |
|
407 | |||
408 | if dataAux is None: |
|
408 | if dataAux is None: | |
409 | continue |
|
409 | continue | |
410 | elif isinstance(dataAux, (int, float, numpy.integer, numpy.float)): |
|
410 | elif isinstance(dataAux, (int, float, numpy.integer, numpy.float)): | |
411 | dsDict['nDim'] = 0 |
|
411 | dsDict['nDim'] = 0 | |
412 | else: |
|
412 | else: | |
413 | dsDict['nDim'] = len(dataAux.shape) |
|
413 | dsDict['nDim'] = len(dataAux.shape) | |
414 | dsDict['shape'] = dataAux.shape |
|
414 | dsDict['shape'] = dataAux.shape | |
415 | dsDict['dsNumber'] = dataAux.shape[0] |
|
415 | dsDict['dsNumber'] = dataAux.shape[0] | |
416 | dsDict['dtype'] = dataAux.dtype |
|
416 | dsDict['dtype'] = dataAux.dtype | |
417 |
|
417 | |||
418 | dsList.append(dsDict) |
|
418 | dsList.append(dsDict) | |
419 |
|
419 | |||
420 | self.dsList = dsList |
|
420 | self.dsList = dsList | |
421 | self.currentDay = self.dataOut.datatime.date() |
|
421 | self.currentDay = self.dataOut.datatime.date() | |
422 |
|
422 | |||
423 | def timeFlag(self): |
|
423 | def timeFlag(self): | |
424 | currentTime = self.dataOut.utctime |
|
424 | currentTime = self.dataOut.utctime | |
425 | timeTuple = time.localtime(currentTime) |
|
425 | timeTuple = time.localtime(currentTime) | |
426 | dataDay = timeTuple.tm_yday |
|
426 | dataDay = timeTuple.tm_yday | |
427 |
|
427 | |||
428 | if self.lastTime is None: |
|
428 | if self.lastTime is None: | |
429 | self.lastTime = currentTime |
|
429 | self.lastTime = currentTime | |
430 | self.currentDay = dataDay |
|
430 | self.currentDay = dataDay | |
431 | return False |
|
431 | return False | |
432 |
|
432 | |||
433 | timeDiff = currentTime - self.lastTime |
|
433 | timeDiff = currentTime - self.lastTime | |
434 |
|
434 | |||
435 | #Si el dia es diferente o si la diferencia entre un dato y otro supera la hora |
|
435 | #Si el dia es diferente o si la diferencia entre un dato y otro supera la hora | |
436 | if dataDay != self.currentDay: |
|
436 | if dataDay != self.currentDay: | |
437 | self.currentDay = dataDay |
|
437 | self.currentDay = dataDay | |
438 | return True |
|
438 | return True | |
439 | elif timeDiff > 3*60*60: |
|
439 | elif timeDiff > 3*60*60: | |
440 | self.lastTime = currentTime |
|
440 | self.lastTime = currentTime | |
441 | return True |
|
441 | return True | |
442 | else: |
|
442 | else: | |
443 | self.lastTime = currentTime |
|
443 | self.lastTime = currentTime | |
444 | return False |
|
444 | return False | |
445 |
|
445 | |||
446 | def run(self, dataOut, path, blocksPerFile=10, metadataList=None, |
|
446 | def run(self, dataOut, path, blocksPerFile=10, metadataList=None, | |
447 | dataList=[], setType=None, description={}): |
|
447 | dataList=[], setType=None, description={}): | |
448 |
|
448 | |||
449 | self.dataOut = dataOut |
|
449 | self.dataOut = dataOut | |
450 | if not(self.isConfig): |
|
450 | if not(self.isConfig): | |
451 | self.setup(path=path, blocksPerFile=blocksPerFile, |
|
451 | self.setup(path=path, blocksPerFile=blocksPerFile, | |
452 | metadataList=metadataList, dataList=dataList, |
|
452 | metadataList=metadataList, dataList=dataList, | |
453 | setType=setType, description=description) |
|
453 | setType=setType, description=description) | |
454 |
|
454 | |||
455 | self.isConfig = True |
|
455 | self.isConfig = True | |
456 | self.setNextFile() |
|
456 | self.setNextFile() | |
457 |
|
457 | |||
458 | self.putData() |
|
458 | self.putData() | |
459 | return |
|
459 | return | |
460 |
|
460 | |||
461 | def setNextFile(self): |
|
461 | def setNextFile(self): | |
462 |
|
462 | |||
463 | ext = self.ext |
|
463 | ext = self.ext | |
464 | path = self.path |
|
464 | path = self.path | |
465 | setFile = self.setFile |
|
465 | setFile = self.setFile | |
466 |
|
466 | |||
467 | timeTuple = time.localtime(self.dataOut.utctime) |
|
467 | timeTuple = time.localtime(self.dataOut.utctime) | |
468 | subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday) |
|
468 | subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday) | |
469 | fullpath = os.path.join(path, subfolder) |
|
469 | fullpath = os.path.join(path, subfolder) | |
470 |
|
470 | |||
471 | if os.path.exists(fullpath): |
|
471 | if os.path.exists(fullpath): | |
472 | filesList = os.listdir(fullpath) |
|
472 | filesList = os.listdir(fullpath) | |
473 | filesList = [k for k in filesList if k.startswith(self.optchar)] |
|
473 | filesList = [k for k in filesList if k.startswith(self.optchar)] | |
474 | if len( filesList ) > 0: |
|
474 | if len( filesList ) > 0: | |
475 | filesList = sorted(filesList, key=str.lower) |
|
475 | filesList = sorted(filesList, key=str.lower) | |
476 | filen = filesList[-1] |
|
476 | filen = filesList[-1] | |
477 | # el filename debera tener el siguiente formato |
|
477 | # el filename debera tener el siguiente formato | |
478 | # 0 1234 567 89A BCDE (hex) |
|
478 | # 0 1234 567 89A BCDE (hex) | |
479 | # x YYYY DDD SSS .ext |
|
479 | # x YYYY DDD SSS .ext | |
480 | if isNumber(filen[8:11]): |
|
480 | if isNumber(filen[8:11]): | |
481 | setFile = int(filen[8:11]) #inicializo mi contador de seteo al seteo del ultimo file |
|
481 | setFile = int(filen[8:11]) #inicializo mi contador de seteo al seteo del ultimo file | |
482 | else: |
|
482 | else: | |
483 | setFile = -1 |
|
483 | setFile = -1 | |
484 | else: |
|
484 | else: | |
485 | setFile = -1 #inicializo mi contador de seteo |
|
485 | setFile = -1 #inicializo mi contador de seteo | |
486 | else: |
|
486 | else: | |
487 | os.makedirs(fullpath) |
|
487 | os.makedirs(fullpath) | |
488 | setFile = -1 #inicializo mi contador de seteo |
|
488 | setFile = -1 #inicializo mi contador de seteo | |
489 |
|
489 | |||
490 | if self.setType is None: |
|
490 | if self.setType is None: | |
491 | setFile += 1 |
|
491 | setFile += 1 | |
492 | file = '%s%4.4d%3.3d%03d%s' % (self.optchar, |
|
492 | file = '%s%4.4d%3.3d%03d%s' % (self.optchar, | |
493 | timeTuple.tm_year, |
|
493 | timeTuple.tm_year, | |
494 | timeTuple.tm_yday, |
|
494 | timeTuple.tm_yday, | |
495 | setFile, |
|
495 | setFile, | |
496 | ext ) |
|
496 | ext ) | |
497 | else: |
|
497 | else: | |
498 | setFile = timeTuple.tm_hour*60+timeTuple.tm_min |
|
498 | setFile = timeTuple.tm_hour*60+timeTuple.tm_min | |
499 | file = '%s%4.4d%3.3d%04d%s' % (self.optchar, |
|
499 | file = '%s%4.4d%3.3d%04d%s' % (self.optchar, | |
500 | timeTuple.tm_year, |
|
500 | timeTuple.tm_year, | |
501 | timeTuple.tm_yday, |
|
501 | timeTuple.tm_yday, | |
502 | setFile, |
|
502 | setFile, | |
503 | ext ) |
|
503 | ext ) | |
504 |
|
504 | |||
505 | self.filename = os.path.join( path, subfolder, file ) |
|
505 | self.filename = os.path.join( path, subfolder, file ) | |
506 |
|
506 | |||
507 | #Setting HDF5 File |
|
507 | #Setting HDF5 File | |
508 | self.fp = h5py.File(self.filename, 'w') |
|
508 | self.fp = h5py.File(self.filename, 'w') | |
509 | #write metadata |
|
509 | #write metadata | |
510 | self.writeMetadata(self.fp) |
|
510 | self.writeMetadata(self.fp) | |
511 | #Write data |
|
511 | #Write data | |
512 | self.writeData(self.fp) |
|
512 | self.writeData(self.fp) | |
513 |
|
513 | |||
514 | def getLabel(self, name, x=None): |
|
514 | def getLabel(self, name, x=None): | |
515 |
|
515 | |||
516 | if x is None: |
|
516 | if x is None: | |
517 | if 'Data' in self.description: |
|
517 | if 'Data' in self.description: | |
518 | data = self.description['Data'] |
|
518 | data = self.description['Data'] | |
519 | if 'Metadata' in self.description: |
|
519 | if 'Metadata' in self.description: | |
520 | data.update(self.description['Metadata']) |
|
520 | data.update(self.description['Metadata']) | |
521 | else: |
|
521 | else: | |
522 | data = self.description |
|
522 | data = self.description | |
523 | if name in data: |
|
523 | if name in data: | |
524 | if isinstance(data[name], str): |
|
524 | if isinstance(data[name], str): | |
525 | return data[name] |
|
525 | return data[name] | |
526 | elif isinstance(data[name], list): |
|
526 | elif isinstance(data[name], list): | |
527 | return None |
|
527 | return None | |
528 | elif isinstance(data[name], dict): |
|
528 | elif isinstance(data[name], dict): | |
529 | for key, value in data[name].items(): |
|
529 | for key, value in data[name].items(): | |
530 | return key |
|
530 | return key | |
531 | return name |
|
531 | return name | |
532 | else: |
|
532 | else: | |
533 | if 'Metadata' in self.description: |
|
533 | if 'Metadata' in self.description: | |
534 | meta = self.description['Metadata'] |
|
534 | meta = self.description['Metadata'] | |
535 | else: |
|
535 | else: | |
536 | meta = self.description |
|
536 | meta = self.description | |
537 | if name in meta: |
|
537 | if name in meta: | |
538 | if isinstance(meta[name], list): |
|
538 | if isinstance(meta[name], list): | |
539 | return meta[name][x] |
|
539 | return meta[name][x] | |
540 | elif isinstance(meta[name], dict): |
|
540 | elif isinstance(meta[name], dict): | |
541 | for key, value in meta[name].items(): |
|
541 | for key, value in meta[name].items(): | |
542 | return value[x] |
|
542 | return value[x] | |
543 | if 'cspc' in name: |
|
543 | if 'cspc' in name: | |
544 | return 'pair{:02d}'.format(x) |
|
544 | return 'pair{:02d}'.format(x) | |
545 | else: |
|
545 | else: | |
546 | return 'channel{:02d}'.format(x) |
|
546 | return 'channel{:02d}'.format(x) | |
547 |
|
547 | |||
548 | def writeMetadata(self, fp): |
|
548 | def writeMetadata(self, fp): | |
549 |
|
549 | |||
550 | if self.description: |
|
550 | if self.description: | |
551 | if 'Metadata' in self.description: |
|
551 | if 'Metadata' in self.description: | |
552 | grp = fp.create_group('Metadata') |
|
552 | grp = fp.create_group('Metadata') | |
553 | else: |
|
553 | else: | |
554 | grp = fp |
|
554 | grp = fp | |
555 | else: |
|
555 | else: | |
556 | grp = fp.create_group('Metadata') |
|
556 | grp = fp.create_group('Metadata') | |
557 |
|
557 | |||
558 | for i in range(len(self.metadataList)): |
|
558 | for i in range(len(self.metadataList)): | |
559 | if not hasattr(self.dataOut, self.metadataList[i]): |
|
559 | if not hasattr(self.dataOut, self.metadataList[i]): | |
560 | log.warning('Metadata: `{}` not found'.format(self.metadataList[i]), self.name) |
|
560 | log.warning('Metadata: `{}` not found'.format(self.metadataList[i]), self.name) | |
561 | continue |
|
561 | continue | |
562 | value = getattr(self.dataOut, self.metadataList[i]) |
|
562 | value = getattr(self.dataOut, self.metadataList[i]) | |
563 | if isinstance(value, bool): |
|
563 | if isinstance(value, bool): | |
564 | if value is True: |
|
564 | if value is True: | |
565 | value = 1 |
|
565 | value = 1 | |
566 | else: |
|
566 | else: | |
567 | value = 0 |
|
567 | value = 0 | |
568 | grp.create_dataset(self.getLabel(self.metadataList[i]), data=value) |
|
568 | grp.create_dataset(self.getLabel(self.metadataList[i]), data=value) | |
569 | return |
|
569 | return | |
570 |
|
570 | |||
571 | def writeData(self, fp): |
|
571 | def writeData(self, fp): | |
572 |
|
572 | |||
573 | if self.description: |
|
573 | if self.description: | |
574 | if 'Data' in self.description: |
|
574 | if 'Data' in self.description: | |
575 | grp = fp.create_group('Data') |
|
575 | grp = fp.create_group('Data') | |
576 | else: |
|
576 | else: | |
577 | grp = fp |
|
577 | grp = fp | |
578 | else: |
|
578 | else: | |
579 | grp = fp.create_group('Data') |
|
579 | grp = fp.create_group('Data') | |
580 |
|
580 | |||
581 | dtsets = [] |
|
581 | dtsets = [] | |
582 | data = [] |
|
582 | data = [] | |
583 |
|
583 | |||
584 | for dsInfo in self.dsList: |
|
584 | for dsInfo in self.dsList: | |
585 | if dsInfo['nDim'] == 0: |
|
585 | if dsInfo['nDim'] == 0: | |
586 | ds = grp.create_dataset( |
|
586 | ds = grp.create_dataset( | |
587 | self.getLabel(dsInfo['variable']), |
|
587 | self.getLabel(dsInfo['variable']), | |
588 | (self.blocksPerFile, ), |
|
588 | (self.blocksPerFile, ), | |
589 | chunks=True, |
|
589 | chunks=True, | |
590 | dtype=numpy.float64) |
|
590 | dtype=numpy.float64) | |
591 | dtsets.append(ds) |
|
591 | dtsets.append(ds) | |
592 | data.append((dsInfo['variable'], -1)) |
|
592 | data.append((dsInfo['variable'], -1)) | |
593 | else: |
|
593 | else: | |
594 | label = self.getLabel(dsInfo['variable']) |
|
594 | label = self.getLabel(dsInfo['variable']) | |
595 | if label is not None: |
|
595 | if label is not None: | |
596 | sgrp = grp.create_group(label) |
|
596 | sgrp = grp.create_group(label) | |
597 | else: |
|
597 | else: | |
598 | sgrp = grp |
|
598 | sgrp = grp | |
599 | for i in range(dsInfo['dsNumber']): |
|
599 | for i in range(dsInfo['dsNumber']): | |
600 | ds = sgrp.create_dataset( |
|
600 | ds = sgrp.create_dataset( | |
601 | self.getLabel(dsInfo['variable'], i), |
|
601 | self.getLabel(dsInfo['variable'], i), | |
602 | (self.blocksPerFile, ) + dsInfo['shape'][1:], |
|
602 | (self.blocksPerFile, ) + dsInfo['shape'][1:], | |
603 | chunks=True, |
|
603 | chunks=True, | |
604 | dtype=dsInfo['dtype']) |
|
604 | dtype=dsInfo['dtype']) | |
605 | dtsets.append(ds) |
|
605 | dtsets.append(ds) | |
606 | data.append((dsInfo['variable'], i)) |
|
606 | data.append((dsInfo['variable'], i)) | |
607 | fp.flush() |
|
607 | fp.flush() | |
608 |
|
608 | |||
609 | log.log('Creating file: {}'.format(fp.filename), self.name) |
|
609 | log.log('Creating file: {}'.format(fp.filename), self.name) | |
610 |
|
610 | |||
611 | self.ds = dtsets |
|
611 | self.ds = dtsets | |
612 | self.data = data |
|
612 | self.data = data | |
613 | self.firsttime = True |
|
613 | self.firsttime = True | |
614 | self.blockIndex = 0 |
|
614 | self.blockIndex = 0 | |
615 | return |
|
615 | return | |
616 |
|
616 | |||
617 | def putData(self): |
|
617 | def putData(self): | |
618 |
|
618 | |||
619 | if (self.blockIndex == self.blocksPerFile) or self.timeFlag(): |
|
619 | if (self.blockIndex == self.blocksPerFile) or self.timeFlag(): | |
620 | self.closeFile() |
|
620 | self.closeFile() | |
621 | self.setNextFile() |
|
621 | self.setNextFile() | |
622 |
|
622 | |||
623 | for i, ds in enumerate(self.ds): |
|
623 | for i, ds in enumerate(self.ds): | |
624 | attr, ch = self.data[i] |
|
624 | attr, ch = self.data[i] | |
625 | if ch == -1: |
|
625 | if ch == -1: | |
626 | ds[self.blockIndex] = getattr(self.dataOut, attr) |
|
626 | ds[self.blockIndex] = getattr(self.dataOut, attr) | |
627 | else: |
|
627 | else: | |
628 | ds[self.blockIndex] = getattr(self.dataOut, attr)[ch] |
|
628 | ds[self.blockIndex] = getattr(self.dataOut, attr)[ch] | |
629 |
|
629 | |||
630 | self.fp.flush() |
|
630 | self.fp.flush() | |
631 | self.blockIndex += 1 |
|
631 | self.blockIndex += 1 | |
632 | log.log('Block No. {}/{}'.format(self.blockIndex, self.blocksPerFile), self.name) |
|
632 | log.log('Block No. {}/{}'.format(self.blockIndex, self.blocksPerFile), self.name) | |
633 |
|
633 | |||
634 | return |
|
634 | return | |
635 |
|
635 | |||
636 | def closeFile(self): |
|
636 | def closeFile(self): | |
637 |
|
637 | |||
638 | if self.blockIndex != self.blocksPerFile: |
|
638 | if self.blockIndex != self.blocksPerFile: | |
639 | for ds in self.ds: |
|
639 | for ds in self.ds: | |
640 | ds.resize(self.blockIndex, axis=0) |
|
640 | ds.resize(self.blockIndex, axis=0) | |
641 |
|
641 | |||
642 | if self.fp: |
|
642 | if self.fp: | |
643 | self.fp.flush() |
|
643 | self.fp.flush() | |
644 | self.fp.close() |
|
644 | self.fp.close() | |
645 |
|
645 | |||
646 | def close(self): |
|
646 | def close(self): | |
647 |
|
647 | |||
648 | self.closeFile() |
|
648 | self.closeFile() |
@@ -1,37 +1,37 | |||||
1 | import os,sys |
|
1 | import os,sys | |
2 | import datetime |
|
2 | import datetime | |
3 | import time |
|
3 | import time | |
4 | from schainpy.controller import Project |
|
4 | from schainpy.controller import Project | |
5 | #path = '/home/alex/Downloads/hdf5_testPP2' |
|
5 | #path = '/home/alex/Downloads/hdf5_testPP2' | |
6 | #path = '/home/alex/Downloads/hdf5_test' |
|
6 | #path = '/home/alex/Downloads/hdf5_test' | |
7 | #path='/home/alex/Downloads/hdf5_wr' |
|
7 | #path='/home/alex/Downloads/hdf5_wr' | |
8 | path='/home/developer/Downloads/HDF5_WR' |
|
8 | path='/home/developer/Downloads/HDF5_WR/HDF5_064' | |
9 | figpath = path |
|
9 | figpath = path | |
10 | desc = "Simulator Test" |
|
10 | desc = "Simulator Test" | |
11 |
|
11 | |||
12 | controllerObj = Project() |
|
12 | controllerObj = Project() | |
13 |
|
13 | |||
14 | controllerObj.setup(id='10',name='Test Simulator',description=desc) |
|
14 | controllerObj.setup(id='10',name='Test Simulator',description=desc) | |
15 |
|
15 | |||
16 | readUnitConfObj = controllerObj.addReadUnit(datatype='HDFReader', |
|
16 | readUnitConfObj = controllerObj.addReadUnit(datatype='HDFReader', | |
17 | path=path, |
|
17 | path=path, | |
18 | startDate="2021/01/01", #"2020/01/01",#today, |
|
18 | startDate="2021/01/01", #"2020/01/01",#today, | |
19 | endDate= "2021/12/01", #"2020/12/30",#today, |
|
19 | endDate= "2021/12/01", #"2020/12/30",#today, | |
20 | startTime='00:00:00', |
|
20 | startTime='00:00:00', | |
21 | endTime='23:59:59', |
|
21 | endTime='23:59:59', | |
22 | delay=0, |
|
22 | delay=0, | |
23 | #set=0, |
|
23 | #set=0, | |
24 | online=0, |
|
24 | online=0, | |
25 | walk=0)#1 |
|
25 | walk=0)#1 | |
26 |
|
26 | |||
27 | procUnitConfObjA = controllerObj.addProcUnit(datatype='ParametersProc',inputId=readUnitConfObj.getId()) |
|
27 | procUnitConfObjA = controllerObj.addProcUnit(datatype='ParametersProc',inputId=readUnitConfObj.getId()) | |
28 | opObj11 = procUnitConfObjA.addOperation(name='Block360') |
|
28 | opObj11 = procUnitConfObjA.addOperation(name='Block360') | |
29 | opObj11.addParameter(name='n', value='10', format='int') |
|
29 | opObj11.addParameter(name='n', value='10', format='int') | |
30 |
|
30 | |||
31 | opObj11= procUnitConfObjA.addOperation(name='WeatherPlot',optype='other') |
|
31 | opObj11= procUnitConfObjA.addOperation(name='WeatherPlot',optype='other') | |
32 | #opObj11.addParameter(name='save', value=figpath) |
|
32 | #opObj11.addParameter(name='save', value=figpath) | |
33 | #opObj11.addParameter(name='save_period', value=1) |
|
33 | #opObj11.addParameter(name='save_period', value=1) | |
34 | #opObj11 = procUnitConfObjA.addOperation(name='PowerPlot', optype='other')#PulsepairPowerPlot |
|
34 | #opObj11 = procUnitConfObjA.addOperation(name='PowerPlot', optype='other')#PulsepairPowerPlot | |
35 | #opObj11 = procUnitConfObjA.addOperation(name='PPSignalPlot', optype='other') |
|
35 | #opObj11 = procUnitConfObjA.addOperation(name='PPSignalPlot', optype='other') | |
36 |
|
36 | |||
37 | controllerObj.start() |
|
37 | controllerObj.start() |
@@ -1,189 +1,189 | |||||
1 | import os,numpy,h5py |
|
1 | import os,numpy,h5py | |
2 | from shutil import copyfile |
|
2 | from shutil import copyfile | |
3 | import sys,time |
|
3 | import sys,time | |
4 |
|
4 | |||
5 | def isNumber(str): |
|
5 | def isNumber(str): | |
6 | try: |
|
6 | try: | |
7 | float(str) |
|
7 | float(str) | |
8 | return True |
|
8 | return True | |
9 | except: |
|
9 | except: | |
10 | return False |
|
10 | return False | |
11 |
|
11 | |||
12 | def getfirstFilefromPath(path,meta,ext): |
|
12 | def getfirstFilefromPath(path,meta,ext): | |
13 | validFilelist = [] |
|
13 | validFilelist = [] | |
14 | fileList = os.listdir(path) |
|
14 | fileList = os.listdir(path) | |
15 | if len(fileList)<1: |
|
15 | if len(fileList)<1: | |
16 | return None |
|
16 | return None | |
17 | # meta 1234 567 8-18 BCDE |
|
17 | # meta 1234 567 8-18 BCDE | |
18 | # H,D,PE YYYY DDD EPOC .ext |
|
18 | # H,D,PE YYYY DDD EPOC .ext | |
19 |
|
19 | |||
20 | for thisFile in fileList: |
|
20 | for thisFile in fileList: | |
21 | if meta =="PE": |
|
21 | if meta =="PE": | |
22 | try: |
|
22 | try: | |
23 | number= int(thisFile[len(meta)+7:len(meta)+17]) |
|
23 | number= int(thisFile[len(meta)+7:len(meta)+17]) | |
24 | except: |
|
24 | except: | |
25 | print("There is a file or folder with different format") |
|
25 | print("There is a file or folder with different format") | |
26 | if meta == "D": |
|
26 | if meta == "D": | |
27 | try: |
|
27 | try: | |
28 | number= int(thisFile[8:11]) |
|
28 | number= int(thisFile[8:11]) | |
29 | except: |
|
29 | except: | |
30 | print("There is a file or folder with different format") |
|
30 | print("There is a file or folder with different format") | |
31 |
|
31 | |||
32 | if not isNumber(str=number): |
|
32 | if not isNumber(str=number): | |
33 | continue |
|
33 | continue | |
34 | if (os.path.splitext(thisFile)[-1].lower() != ext.lower()): |
|
34 | if (os.path.splitext(thisFile)[-1].lower() != ext.lower()): | |
35 | continue |
|
35 | continue | |
36 | validFilelist.sort() |
|
36 | validFilelist.sort() | |
37 | validFilelist.append(thisFile) |
|
37 | validFilelist.append(thisFile) | |
38 | if len(validFilelist)>0: |
|
38 | if len(validFilelist)>0: | |
39 | validFilelist = sorted(validFilelist,key=str.lower) |
|
39 | validFilelist = sorted(validFilelist,key=str.lower) | |
40 | return validFilelist |
|
40 | return validFilelist | |
41 | return None |
|
41 | return None | |
42 |
|
42 | |||
43 | def gettimeutcfromDirFilename(path,file): |
|
43 | def gettimeutcfromDirFilename(path,file): | |
44 | dir_file= path+"/"+file |
|
44 | dir_file= path+"/"+file | |
45 | fp = h5py.File(dir_file,'r') |
|
45 | fp = h5py.File(dir_file,'r') | |
46 | epoc = fp['Metadata'].get('utctimeInit')[()] |
|
46 | epoc = fp['Metadata'].get('utctimeInit')[()] | |
47 | fp.close() |
|
47 | fp.close() | |
48 | return epoc |
|
48 | return epoc | |
49 |
|
49 | |||
50 | def getDatavaluefromDirFilename(path,file,value): |
|
50 | def getDatavaluefromDirFilename(path,file,value): | |
51 | dir_file= path+"/"+file |
|
51 | dir_file= path+"/"+file | |
52 | fp = h5py.File(dir_file,'r') |
|
52 | fp = h5py.File(dir_file,'r') | |
53 | array = fp['Data'].get(value)[()] |
|
53 | array = fp['Data'].get(value)[()] | |
54 | fp.close() |
|
54 | fp.close() | |
55 | return array |
|
55 | return array | |
56 |
|
56 | |||
57 |
|
57 | |||
58 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· Velocidad de PedestalΒ·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· |
|
58 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· Velocidad de PedestalΒ·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· | |
59 | w = input ("Ingresa velocidad de Pedestal: ") |
|
59 | w = input ("Ingresa velocidad de Pedestal: ") | |
60 | w = 4 |
|
60 | w = 4 | |
61 | w = float(w) |
|
61 | w = float(w) | |
62 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· Resolucion minimo en gradosΒ·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· |
|
62 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· Resolucion minimo en gradosΒ·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· | |
63 | alfa = input ("Ingresa resolucion minima en grados: ") |
|
63 | alfa = input ("Ingresa resolucion minima en grados: ") | |
64 | alfa = 1 |
|
64 | alfa = 1 | |
65 | alfa = float(alfa) |
|
65 | alfa = float(alfa) | |
66 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· IPP del Experimento Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· |
|
66 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· IPP del Experimento Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· | |
67 | IPP = input ("Ingresa el IPP del experimento: ") |
|
67 | IPP = input ("Ingresa el IPP del experimento: ") | |
68 | IPP = 0.0004 |
|
68 | IPP = 0.0004 | |
69 | IPP = float(IPP) |
|
69 | IPP = float(IPP) | |
70 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· MODE Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· |
|
70 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· MODE Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· | |
71 | mode = input ("Ingresa el MODO del experimento T or F: ") |
|
71 | mode = input ("Ingresa el MODO del experimento T or F: ") | |
72 | mode = "T" |
|
72 | mode = "T" | |
73 | mode = str(mode) |
|
73 | mode = str(mode) | |
74 |
|
74 | |||
75 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· Tiempo en generar la resolucion minΒ·Β·Β· |
|
75 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· Tiempo en generar la resolucion minΒ·Β·Β· | |
76 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· MCU Β·Β· var_ang = w * (var_tiempo)Β·Β·Β· |
|
76 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· MCU Β·Β· var_ang = w * (var_tiempo)Β·Β·Β· | |
77 | var_tiempo = alfa/w |
|
77 | var_tiempo = alfa/w | |
78 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· Tiempo Equivalente en perfilesΒ·Β·Β·Β·Β·Β·Β·Β· |
|
78 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· Tiempo Equivalente en perfilesΒ·Β·Β·Β·Β·Β·Β·Β· | |
79 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· var_tiempo = IPP * ( num_perfiles )Β· |
|
79 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· var_tiempo = IPP * ( num_perfiles )Β· | |
80 | num_perfiles = int(var_tiempo/IPP) |
|
80 | num_perfiles = int(var_tiempo/IPP) | |
81 |
|
81 | |||
82 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·DATA PEDESTALΒ·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· |
|
82 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·DATA PEDESTALΒ·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· | |
83 |
dir_pedestal = "/home/developer/Downloads/Pedestal/P20210 |
|
83 | dir_pedestal = "/home/developer/Downloads/Pedestal/P2021093" | |
84 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· DATA ADQΒ·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· |
|
84 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· DATA ADQΒ·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· | |
85 | if mode=="T": |
|
85 | if mode=="T": | |
86 |
dir_adq = "/home/developer/Downloads/HDF5_TESTPP2/d20210 |
|
86 | dir_adq = "/home/developer/Downloads/HDF5_TESTPP2V3/d2021093" # Time domain | |
87 | else: |
|
87 | else: | |
88 | dir_adq = "/home/developer/Downloads/hdf5_test/d2021053" # Frequency domain |
|
88 | dir_adq = "/home/developer/Downloads/hdf5_test/d2021053" # Frequency domain | |
89 |
|
89 | |||
90 | print( "Velocidad angular :", w) |
|
90 | print( "Velocidad angular :", w) | |
91 | print( "Resolucion minima en grados :", alfa) |
|
91 | print( "Resolucion minima en grados :", alfa) | |
92 | print( "Numero de perfiles equivalente:", num_perfiles) |
|
92 | print( "Numero de perfiles equivalente:", num_perfiles) | |
93 | print( "Mode :", mode) |
|
93 | print( "Mode :", mode) | |
94 |
|
94 | |||
95 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· First FileΒ·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· |
|
95 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· First FileΒ·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· | |
96 | list_pedestal = getfirstFilefromPath(path=dir_pedestal,meta="PE",ext=".hdf5") |
|
96 | list_pedestal = getfirstFilefromPath(path=dir_pedestal,meta="PE",ext=".hdf5") | |
97 | list_adq = getfirstFilefromPath(path=dir_adq ,meta="D",ext=".hdf5") |
|
97 | list_adq = getfirstFilefromPath(path=dir_adq ,meta="D",ext=".hdf5") | |
98 | print("list_pedestal") |
|
98 | print("list_pedestal") | |
99 | #print(list_pedestal) |
|
99 | #print(list_pedestal) | |
100 | print("list_adq") |
|
100 | print("list_adq") | |
101 | #print(list_adq) |
|
101 | #print(list_adq) | |
102 | #sys.exit(0) |
|
102 | #sys.exit(0) | |
103 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· utc time Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· |
|
103 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· utc time Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β· | |
104 | utc_pedestal= gettimeutcfromDirFilename(path=dir_pedestal,file=list_pedestal[0]) |
|
104 | utc_pedestal= gettimeutcfromDirFilename(path=dir_pedestal,file=list_pedestal[0]) | |
105 | utc_adq = gettimeutcfromDirFilename(path=dir_adq ,file=list_adq[0]) |
|
105 | utc_adq = gettimeutcfromDirFilename(path=dir_adq ,file=list_adq[0]) | |
106 |
|
106 | |||
107 | print("utc_pedestal :",utc_pedestal) |
|
107 | print("utc_pedestal :",utc_pedestal) | |
108 | print("utc_adq :",utc_adq) |
|
108 | print("utc_adq :",utc_adq) | |
109 | #sys.exit(0) |
|
109 | #sys.exit(0) | |
110 |
|
110 | |||
111 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Relacion: utc_adq (+/-) var_tiempo*nro_file= utc_pedestal |
|
111 | #Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Β·Relacion: utc_adq (+/-) var_tiempo*nro_file= utc_pedestal | |
112 | time_Interval_p = 0.01 |
|
112 | time_Interval_p = 0.01 | |
113 | n_perfiles_p = 100 #muestras por achivo del pedestal |
|
113 | n_perfiles_p = 100 #muestras por achivo del pedestal | |
114 |
|
114 | |||
115 |
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115 | |||
116 | if utc_adq>utc_pedestal: |
|
116 | if utc_adq>utc_pedestal: | |
117 | nro_file = int((utc_adq - utc_pedestal)/(time_Interval_p*n_perfiles_p)) |
|
117 | nro_file = int((utc_adq - utc_pedestal)/(time_Interval_p*n_perfiles_p)) | |
118 | print("nro_file",nro_file) |
|
118 | print("nro_file",nro_file) | |
119 | ff_pedestal = list_pedestal[nro_file] |
|
119 | ff_pedestal = list_pedestal[nro_file] | |
120 | print(ff_pedestal) |
|
120 | print(ff_pedestal) | |
121 | utc_pedestal = gettimeutcfromDirFilename(path=dir_pedestal,file=ff_pedestal) |
|
121 | utc_pedestal = gettimeutcfromDirFilename(path=dir_pedestal,file=ff_pedestal) | |
122 | print(utc_pedestal) |
|
122 | print(utc_pedestal) | |
123 | nro_key_p = int((utc_adq-utc_pedestal)/time_Interval_p) |
|
123 | nro_key_p = int((utc_adq-utc_pedestal)/time_Interval_p) | |
124 | print(nro_key_p) |
|
124 | print(nro_key_p) | |
125 | #sys.exit(0) |
|
125 | #sys.exit(0) | |
126 | if utc_adq >utc_pedestal: |
|
126 | if utc_adq >utc_pedestal: | |
127 | ff_pedestal = ff_pedestal |
|
127 | ff_pedestal = ff_pedestal | |
128 | else: |
|
128 | else: | |
129 | nro_file = nro_file-1 |
|
129 | nro_file = nro_file-1 | |
130 | ff_pedestal = list_pedestal[nro_file] |
|
130 | ff_pedestal = list_pedestal[nro_file] | |
131 | utc_pedestal = gettimeutcfromDirFilename(path=dir_pedestal,file=ff_pedestal) |
|
131 | utc_pedestal = gettimeutcfromDirFilename(path=dir_pedestal,file=ff_pedestal) | |
132 | angulo = getDatavaluefromDirFilename(path=dir_pedestal,file=ff_pedestal,value="azimuth") |
|
132 | angulo = getDatavaluefromDirFilename(path=dir_pedestal,file=ff_pedestal,value="azimuth") | |
133 | nro_key_p = int((utc_adq-utc_pedestal)/time_Interval_p) |
|
133 | nro_key_p = int((utc_adq-utc_pedestal)/time_Interval_p) | |
134 | print("nro_file :",nro_file) |
|
134 | print("nro_file :",nro_file) | |
135 | print("name_file :",ff_pedestal) |
|
135 | print("name_file :",ff_pedestal) | |
136 | print("utc_pedestal_file :",utc_pedestal) |
|
136 | print("utc_pedestal_file :",utc_pedestal) | |
137 | print("nro_key_p :",nro_key_p) |
|
137 | print("nro_key_p :",nro_key_p) | |
138 | print("utc_pedestal_init :",utc_pedestal+nro_key_p*time_Interval_p) |
|
138 | print("utc_pedestal_init :",utc_pedestal+nro_key_p*time_Interval_p) | |
139 | print("angulo_array :",angulo[nro_key_p]) |
|
139 | print("angulo_array :",angulo[nro_key_p]) | |
140 | #4+25+25+25+21 |
|
140 | #4+25+25+25+21 | |
141 | #while True: |
|
141 | #while True: | |
142 | list_pedestal = getfirstFilefromPath(path=dir_pedestal,meta="PE",ext=".hdf5") |
|
142 | list_pedestal = getfirstFilefromPath(path=dir_pedestal,meta="PE",ext=".hdf5") | |
143 | list_adq = getfirstFilefromPath(path=dir_adq ,meta="D",ext=".hdf5") |
|
143 | list_adq = getfirstFilefromPath(path=dir_adq ,meta="D",ext=".hdf5") | |
144 |
|
144 | |||
145 | nro_file = nro_file #10 |
|
145 | nro_file = nro_file #10 | |
146 | nro_key_perfil = nro_key_p |
|
146 | nro_key_perfil = nro_key_p | |
147 | blocksPerFile = 100##### aqui se cambia dependiendo de los blqoues por achivo en adq |
|
147 | blocksPerFile = 100##### aqui se cambia dependiendo de los blqoues por achivo en adq | |
148 | wr_path = "/home/developer/Downloads/HDF5_WR/" |
|
148 | wr_path = "/home/developer/Downloads/HDF5_WR/" | |
149 | # Lectura de archivos de adquisicion para adicion de azimuth |
|
149 | # Lectura de archivos de adquisicion para adicion de azimuth | |
150 | # factor de archivos |
|
150 | # factor de archivos | |
151 | #f_a_p = tiempo_file_1_adq/tiempo_file_1_ped=25/1 = 25 |
|
151 | #f_a_p = tiempo_file_1_adq/tiempo_file_1_ped=25/1 = 25 | |
152 | tiempo_file_1_adq=25 |
|
152 | tiempo_file_1_adq=25 | |
153 | tiempo_file_1_ped=1 |
|
153 | tiempo_file_1_ped=1 | |
154 | f_a_p= int(tiempo_file_1_adq/tiempo_file_1_ped) |
|
154 | f_a_p= int(tiempo_file_1_adq/tiempo_file_1_ped) | |
155 | for thisFile in range(len(list_adq)): |
|
155 | for thisFile in range(len(list_adq)): | |
156 | print("thisFileAdq",thisFile) |
|
156 | print("thisFileAdq",thisFile) | |
157 | angulo_adq = numpy.zeros(blocksPerFile) |
|
157 | angulo_adq = numpy.zeros(blocksPerFile) | |
158 | tmp = 0 |
|
158 | tmp = 0 | |
159 | for j in range(blocksPerFile): |
|
159 | for j in range(blocksPerFile): | |
160 | iterador = nro_key_perfil + f_a_p*(j-tmp) |
|
160 | iterador = nro_key_perfil + f_a_p*(j-tmp) | |
161 | #print("iterador",iterador) |
|
161 | #print("iterador",iterador) | |
162 | if iterador < n_perfiles_p: |
|
162 | if iterador < n_perfiles_p: | |
163 | nro_file = nro_file |
|
163 | nro_file = nro_file | |
164 | else: |
|
164 | else: | |
165 | nro_file = nro_file+1 |
|
165 | nro_file = nro_file+1 | |
166 | dif = blocksPerFile-(nro_key_perfil+f_a_p*(j-tmp-1)) |
|
166 | dif = blocksPerFile-(nro_key_perfil+f_a_p*(j-tmp-1)) | |
167 | tmp = j |
|
167 | tmp = j | |
168 | nro_key_perfil= f_a_p-dif |
|
168 | nro_key_perfil= f_a_p-dif | |
169 | iterador = nro_key_perfil |
|
169 | iterador = nro_key_perfil | |
170 | #print(iterador) |
|
170 | #print(iterador) | |
171 | print("nro_file",nro_file) |
|
171 | print("nro_file",nro_file) | |
172 | ff_pedestal = list_pedestal[nro_file] |
|
172 | ff_pedestal = list_pedestal[nro_file] | |
173 | angulo = getDatavaluefromDirFilename(path=dir_pedestal,file=ff_pedestal,value="azimuth") |
|
173 | angulo = getDatavaluefromDirFilename(path=dir_pedestal,file=ff_pedestal,value="azimuth") | |
174 | angulo_adq[j]= angulo[iterador] |
|
174 | angulo_adq[j]= angulo[iterador] | |
175 | copyfile(dir_adq+"/"+list_adq[thisFile],wr_path+list_adq[thisFile]) |
|
175 | copyfile(dir_adq+"/"+list_adq[thisFile],wr_path+list_adq[thisFile]) | |
176 | fp = h5py.File(wr_path+list_adq[thisFile],'a') |
|
176 | fp = h5py.File(wr_path+list_adq[thisFile],'a') | |
177 | #grp = fp.create_group("Pedestal") |
|
177 | #grp = fp.create_group("Pedestal") | |
178 | grp = fp['Metadata'] |
|
178 | grp = fp['Metadata'] | |
179 | #sgrp = grp.create_group('Pedestal') |
|
179 | #sgrp = grp.create_group('Pedestal') | |
180 | dset = grp.create_dataset("azimuth" , data=angulo_adq) |
|
180 | dset = grp.create_dataset("azimuth" , data=angulo_adq) | |
181 | fp.close() |
|
181 | fp.close() | |
182 | print("Angulo",angulo_adq) |
|
182 | print("Angulo",angulo_adq) | |
183 | print("Angulo",len(angulo_adq)) |
|
183 | print("Angulo",len(angulo_adq)) | |
184 | nro_key_perfil=iterador + f_a_p |
|
184 | nro_key_perfil=iterador + f_a_p | |
185 | if nro_key_perfil< n_perfiles_p: |
|
185 | if nro_key_perfil< n_perfiles_p: | |
186 | nro_file = nro_file |
|
186 | nro_file = nro_file | |
187 | else: |
|
187 | else: | |
188 | nro_file = nro_file+1 |
|
188 | nro_file = nro_file+1 | |
189 | nro_key_perfil= nro_key_p |
|
189 | nro_key_perfil= nro_key_p |
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