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cambios para amisr ISR getNoise

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schainpy/model/data/jrodata.py +1 -1

             # Copyright (c) 2012-2020 Jicamarca Radio Observatory
             # All rights reserved.
             #
             # Distributed under the terms of the BSD 3-clause license.
             """Definition of diferent Data objects for different types of data
             Here you will find the diferent data objects for the different types
             of data, this data objects must be used as dataIn or dataOut objects in
             processing units and operations. Currently the supported data objects are:
             Voltage, Spectra, SpectraHeis, Fits, Correlation and Parameters
             """
             import copy
             import numpy
             import datetime
             import json
             import schainpy.admin
             from schainpy.utils import log
             from .jroheaderIO import SystemHeader, RadarControllerHeader
             from schainpy.model.data import _noise
             def getNumpyDtype(dataTypeCode):
                 if dataTypeCode == 0:
                     numpyDtype = numpy.dtype([('real', '<i1'), ('imag', '<i1')])
                 elif dataTypeCode == 1:
                     numpyDtype = numpy.dtype([('real', '<i2'), ('imag', '<i2')])
                 elif dataTypeCode == 2:
                     numpyDtype = numpy.dtype([('real', '<i4'), ('imag', '<i4')])
                 elif dataTypeCode == 3:
                     numpyDtype = numpy.dtype([('real', '<i8'), ('imag', '<i8')])
                 elif dataTypeCode == 4:
                     numpyDtype = numpy.dtype([('real', '<f4'), ('imag', '<f4')])
                 elif dataTypeCode == 5:
                     numpyDtype = numpy.dtype([('real', '<f8'), ('imag', '<f8')])
                 else:
                     raise ValueError('dataTypeCode was not defined')
                 return numpyDtype
             def getDataTypeCode(numpyDtype):
                 if numpyDtype == numpy.dtype([('real', '<i1'), ('imag', '<i1')]):
                     datatype = 0
                 elif numpyDtype == numpy.dtype([('real', '<i2'), ('imag', '<i2')]):
                     datatype = 1
                 elif numpyDtype == numpy.dtype([('real', '<i4'), ('imag', '<i4')]):
                     datatype = 2
                 elif numpyDtype == numpy.dtype([('real', '<i8'), ('imag', '<i8')]):
                     datatype = 3
                 elif numpyDtype == numpy.dtype([('real', '<f4'), ('imag', '<f4')]):
                     datatype = 4
                 elif numpyDtype == numpy.dtype([('real', '<f8'), ('imag', '<f8')]):
                     datatype = 5
                 else:
                     datatype = None
                 return datatype
             def hildebrand_sekhon(data, navg):
                 """
                 This method is for the objective determination of the noise level in Doppler spectra. This
                 implementation technique is based on the fact that the standard deviation of the spectral
                 densities is equal to the mean spectral density for white Gaussian noise
                 Inputs:
                     Data    :    heights
                     navg    :    numbers of averages
                 Return:
                     mean    :    noise's level
                 """
                 sortdata = numpy.sort(data, axis=None)
                 '''
                 lenOfData = len(sortdata)
                 nums_min = lenOfData*0.2
                 if nums_min <= 5:
                     nums_min = 5
                 sump = 0.
                 sumq = 0.
                 j = 0
                 cont = 1
                 while((cont == 1)and(j < lenOfData)):
                     sump += sortdata[j]
                     sumq += sortdata[j]**2
                     if j > nums_min:
                         rtest = float(j)/(j-1) + 1.0/navg
                         if ((sumq*j) > (rtest*sump**2)):
                             j = j - 1
                             sump = sump - sortdata[j]
                             sumq = sumq - sortdata[j]**2
                             cont = 0
                     j += 1
                 lnoise = sump / j
                 '''
                 return _noise.hildebrand_sekhon(sortdata, navg)
             class Beam:
                 def __init__(self):
                     self.codeList = []
                     self.azimuthList = []
                     self.zenithList = []
             class GenericData(object):
                 flagNoData = True
                 def copy(self, inputObj=None):
                     if inputObj == None:
                         return copy.deepcopy(self)
                     for key in list(inputObj.__dict__.keys()):
                         attribute = inputObj.__dict__[key]
                         # If this attribute is a tuple or list
                         if type(inputObj.__dict__[key]) in (tuple, list):
                             self.__dict__[key] = attribute[:]
                             continue
                         # If this attribute is another object or instance
                         if hasattr(attribute, '__dict__'):
                             self.__dict__[key] = attribute.copy()
                             continue
                         self.__dict__[key] = inputObj.__dict__[key]
                 def deepcopy(self):
                     return copy.deepcopy(self)
                 def isEmpty(self):
                     return self.flagNoData
                 def isReady(self):
                     return not self.flagNoData
             class JROData(GenericData):
                 systemHeaderObj = SystemHeader()
                 radarControllerHeaderObj = RadarControllerHeader()
                 type = None
                 datatype = None  # dtype but in string
                 nProfiles = None
                 heightList = None
                 channelList = None
                 flagDiscontinuousBlock = False
                 useLocalTime = False
                 utctime = None
                 timeZone = None
                 dstFlag = None
                 errorCount = None
                 blocksize = None
                 flagDecodeData = False  # asumo q la data no esta decodificada
                 flagDeflipData = False  # asumo q la data no esta sin flip
                 flagShiftFFT = False
                 nCohInt = None
                 windowOfFilter = 1
                 C = 3e8
                 frequency = 49.92e6
                 realtime = False
                 beacon_heiIndexList = None
                 last_block = None
                 blocknow = None
                 azimuth = None
                 zenith = None
                 beam = Beam()
                 profileIndex = None
                 error = None
                 data = None
                 nmodes = None
                 metadata_list = ['heightList', 'timeZone', 'type']
                 codeList = None
                 azimuthList = None
                 elevationList = None
                 def __str__(self):
                     return '{} - {}'.format(self.type, self.datatime())
                 def getNoise(self):
                     raise NotImplementedError
                 @property
                 def nChannels(self):
                     return len(self.channelList)
                 @property
                 def channelIndexList(self):
                     return list(range(self.nChannels))
                 @property
                 def nHeights(self):
                     return len(self.heightList)
                 def getDeltaH(self):
                     return self.heightList[1] - self.heightList[0]
                 @property
                 def ltctime(self):
                     if self.useLocalTime:
                         return self.utctime - self.timeZone * 60
                     return self.utctime
                 @property
                 def datatime(self):
                     datatimeValue = datetime.datetime.utcfromtimestamp(self.ltctime)
                     return datatimeValue
                 def getTimeRange(self):
                     datatime = []
                     datatime.append(self.ltctime)
                     datatime.append(self.ltctime + self.timeInterval + 1)
                     datatime = numpy.array(datatime)
                     return datatime
                 def getFmaxTimeResponse(self):
                     period = (10**-6) * self.getDeltaH() / (0.15)
                     PRF = 1. / (period * self.nCohInt)
                     fmax = PRF
                     return fmax
                 def getFmax(self):
                     PRF = 1. / (self.ippSeconds * self.nCohInt)
                     fmax = PRF
                     return fmax
                 def getVmax(self):
                     _lambda = self.C / self.frequency
                     vmax = self.getFmax() * _lambda / 2
                     return vmax
                 @property
                 def ippSeconds(self):
                     '''
                     '''
                     return self.radarControllerHeaderObj.ippSeconds
                 @ippSeconds.setter
                 def ippSeconds(self, ippSeconds):
                     '''
                     '''
                     self.radarControllerHeaderObj.ippSeconds = ippSeconds
                 @property
                 def code(self):
                     '''
                     '''
                     return self.radarControllerHeaderObj.code
                 @code.setter
                 def code(self, code):
                     '''
                     '''
                     self.radarControllerHeaderObj.code = code
                 @property
                 def nCode(self):
                     '''
                     '''
                     return self.radarControllerHeaderObj.nCode
                 @nCode.setter
                 def nCode(self, ncode):
                     '''
                     '''
                     self.radarControllerHeaderObj.nCode = ncode
                 @property
                 def nBaud(self):
                     '''
                     '''
                     return self.radarControllerHeaderObj.nBaud
                 @nBaud.setter
                 def nBaud(self, nbaud):
                     '''
                     '''
                     self.radarControllerHeaderObj.nBaud = nbaud
                 @property
                 def ipp(self):
                     '''
                     '''
                     return self.radarControllerHeaderObj.ipp
                 @ipp.setter
                 def ipp(self, ipp):
                     '''
                     '''
                     self.radarControllerHeaderObj.ipp = ipp
                 @property
                 def metadata(self):
                     '''
                     '''
                     return {attr: getattr(self, attr) for attr in self.metadata_list}
             class Voltage(JROData):
                 dataPP_POW   = None
                 dataPP_DOP   = None
                 dataPP_WIDTH = None
                 dataPP_SNR   = None
                 def __init__(self):
                     '''
                     Constructor
                     '''
                     self.useLocalTime = True
                     self.radarControllerHeaderObj = RadarControllerHeader()
                     self.systemHeaderObj = SystemHeader()
                     self.type = "Voltage"
                     self.data = None
                     self.nProfiles = None
                     self.heightList = None
                     self.channelList = None
                     self.flagNoData = True
                     self.flagDiscontinuousBlock = False
                     self.utctime = None
                     self.timeZone = 0
                     self.dstFlag = None
                     self.errorCount = None
                     self.nCohInt = None
                     self.blocksize = None
                     self.flagCohInt = False
                     self.flagDecodeData = False  # asumo q la data no esta decodificada
                     self.flagDeflipData = False  # asumo q la data no esta sin flip
                     self.flagShiftFFT = False
                     self.flagDataAsBlock = False  # Asumo que la data es leida perfil a perfil
                     self.profileIndex = 0
                     self.metadata_list = ['type', 'heightList', 'timeZone', 'nProfiles', 'channelList', 'nCohInt',
                         'code', 'nCode', 'nBaud', 'ippSeconds', 'ipp']
                 def getNoisebyHildebrand(self, channel=None):
                     """
                     Determino el nivel de ruido usando el metodo Hildebrand-Sekhon
                     Return:
                         noiselevel
                     """
                     if channel != None:
                         data = self.data[channel]
                         nChannels = 1
                     else:
                         data = self.data
                         nChannels = self.nChannels
                     noise = numpy.zeros(nChannels)
                     power = data * numpy.conjugate(data)
                     for thisChannel in range(nChannels):
                         if nChannels == 1:
                             daux = power[:].real
                         else:
                             daux = power[thisChannel, :].real
                         noise[thisChannel] = hildebrand_sekhon(daux, self.nCohInt)
                     return noise
                 def getNoise(self, type=1, channel=None):
                     if type == 1:
                         noise = self.getNoisebyHildebrand(channel)
                     return noise
                 def getPower(self, channel=None):
                     if channel != None:
                         data = self.data[channel]
                     else:
                         data = self.data
                     power = data * numpy.conjugate(data)
                     powerdB = 10 * numpy.log10(power.real)
                     powerdB = numpy.squeeze(powerdB)
                     return powerdB
                 @property
                 def timeInterval(self):
                     return self.ippSeconds * self.nCohInt
                 noise = property(getNoise, "I'm the 'nHeights' property.")
             class Spectra(JROData):
                 def __init__(self):
                     '''
                     Constructor
                     '''
                     self.data_dc = None
                     self.data_spc = None
                     self.data_cspc = None
                     self.useLocalTime = True
                     self.radarControllerHeaderObj = RadarControllerHeader()
                     self.systemHeaderObj = SystemHeader()
                     self.type = "Spectra"
                     self.timeZone = 0
                     self.nProfiles = None
                     self.heightList = None
                     self.channelList = None
                     self.pairsList = None
                     self.flagNoData = True
                     self.flagDiscontinuousBlock = False
                     self.utctime = None
                     self.nCohInt = None
                     self.nIncohInt = None
                     self.blocksize = None
                     self.nFFTPoints = None
                     self.wavelength = None
                     self.flagDecodeData = False  # asumo q la data no esta decodificada
                     self.flagDeflipData = False  # asumo q la data no esta sin flip
                     self.flagShiftFFT = False
                     self.ippFactor = 1
                     self.beacon_heiIndexList = []
                     self.noise_estimation = None
                     self.codeList = []
                     self.azimuthList = []
                     self.elevationList = []
                     self.metadata_list = ['type', 'heightList', 'timeZone', 'pairsList', 'channelList', 'nCohInt',
                         'code', 'nCode', 'nBaud', 'ippSeconds', 'ipp','nIncohInt', 'nFFTPoints', 'nProfiles']
                 def getNoisebyHildebrand(self, xmin_index=None, xmax_index=None, ymin_index=None, ymax_index=None):
                     """
                     Determino el nivel de ruido usando el metodo Hildebrand-Sekhon
                     Return:
                         noiselevel
                     """
                     noise = numpy.zeros(self.nChannels)
                     for channel in range(self.nChannels):
                         daux = self.data_spc[channel,
                                              xmin_index:xmax_index, ymin_index:ymax_index]
                         noise[channel] = hildebrand_sekhon(daux, self.nIncohInt)
                     return noise
                 def getNoise(self, xmin_index=None, xmax_index=None, ymin_index=None, ymax_index=None):
                     if self.noise_estimation is not None:
                         # this was estimated by getNoise Operation defined in jroproc_spectra.py
                         return self.noise_estimation
                     else:
                         noise = self.getNoisebyHildebrand(
                             xmin_index, xmax_index, ymin_index, ymax_index)
                         return noise
                 def getFreqRangeTimeResponse(self, extrapoints=0):
                     deltafreq = self.getFmaxTimeResponse() / (self.nFFTPoints * self.ippFactor)
                     freqrange = deltafreq * (numpy.arange(self.nFFTPoints + extrapoints) - self.nFFTPoints / 2.) - deltafreq / 2
                     return freqrange
                 def getAcfRange(self, extrapoints=0):
                     deltafreq = 10. / (self.getFmax() / (self.nFFTPoints * self.ippFactor))
                     freqrange = deltafreq * (numpy.arange(self.nFFTPoints + extrapoints) -self.nFFTPoints / 2.) - deltafreq / 2
                     return freqrange
                 def getFreqRange(self, extrapoints=0):
                     deltafreq = self.getFmax() / (self.nFFTPoints * self.ippFactor)
                     freqrange = deltafreq * (numpy.arange(self.nFFTPoints + extrapoints) -self.nFFTPoints / 2.) - deltafreq / 2
                     return freqrange
                 def getVelRange(self, extrapoints=0):
                     deltav = self.getVmax() / (self.nFFTPoints * self.ippFactor)
                     velrange = deltav * (numpy.arange(self.nFFTPoints + extrapoints) - self.nFFTPoints / 2.)
                     if self.nmodes:
                         return velrange/self.nmodes
                     else:
                         return velrange
                 @property
                 def nPairs(self):
                     return len(self.pairsList)
                 @property
                 def pairsIndexList(self):
                     return list(range(self.nPairs))
                 @property
                 def normFactor(self):
                     pwcode = 1
                     if self.flagDecodeData:
                         pwcode = numpy.sum(self.code[0]**2)
                     #normFactor = min(self.nFFTPoints,self.nProfiles)*self.nIncohInt*self.nCohInt*pwcode*self.windowOfFilter
                     normFactor = self.nProfiles * self.nIncohInt * self.nCohInt * pwcode * self.windowOfFilter
                     return normFactor
                 @property
                 def flag_cspc(self):
                     if self.data_cspc is None:
                         return True
                     return False
                 @property
                 def flag_dc(self):
                     if self.data_dc is None:
                         return True
                     return False
                 @property
                 def timeInterval(self):
                     timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt * self.nProfiles * self.ippFactor
                     if self.nmodes:
                         return self.nmodes*timeInterval
                     else:
                         return timeInterval
                 def getPower(self):
                     factor = self.normFactor
                     z = self.data_spc / factor
                     z = numpy.where(numpy.isfinite(z), z, numpy.NAN)
                     avg = numpy.average(z, axis=1)
                     return 10 * numpy.log10(avg)
                 def getCoherence(self, pairsList=None, phase=False):
                     z = []
                     if pairsList is None:
                         pairsIndexList = self.pairsIndexList
                     else:
                         pairsIndexList = []
                         for pair in pairsList:
                             if pair not in self.pairsList:
                                 raise ValueError("Pair %s is not in dataOut.pairsList" % (
                                     pair))
                             pairsIndexList.append(self.pairsList.index(pair))
                     for i in range(len(pairsIndexList)):
                         pair = self.pairsList[pairsIndexList[i]]
                         ccf = numpy.average(self.data_cspc[pairsIndexList[i], :, :], axis=0)
                         powa = numpy.average(self.data_spc[pair[0], :, :], axis=0)
                         powb = numpy.average(self.data_spc[pair[1], :, :], axis=0)
                         avgcoherenceComplex = ccf / numpy.sqrt(powa * powb)
                         if phase:
                             data = numpy.arctan2(avgcoherenceComplex.imag,
                                                  avgcoherenceComplex.real) * 180 / numpy.pi
                         else:
                             data = numpy.abs(avgcoherenceComplex)
                         z.append(data)
                     return numpy.array(z)
                 def setValue(self, value):
                     print("This property should not be initialized")
                     return
                 noise = property(getNoise, setValue, "I'm the 'nHeights' property.")
             class SpectraHeis(Spectra):
                 def __init__(self):
                     self.radarControllerHeaderObj = RadarControllerHeader()
                     self.systemHeaderObj = SystemHeader()
                     self.type = "SpectraHeis"
                     self.nProfiles = None
                     self.heightList = None
                     self.channelList = None
                     self.flagNoData = True
                     self.flagDiscontinuousBlock = False
                     self.utctime = None
                     self.blocksize = None
                     self.profileIndex = 0
                     self.nCohInt = 1
                     self.nIncohInt = 1
                 @property
                 def normFactor(self):
                     pwcode = 1
                     if self.flagDecodeData:
                         pwcode = numpy.sum(self.code[0]**2)
                     normFactor = self.nIncohInt * self.nCohInt * pwcode
                     return normFactor
                 @property
                 def timeInterval(self):
                     return self.ippSeconds * self.nCohInt * self.nIncohInt
             class Fits(JROData):
                 def __init__(self):
                     self.type = "Fits"
                     self.nProfiles = None
                     self.heightList = None
                     self.channelList = None
                     self.flagNoData = True
                     self.utctime = None
                     self.nCohInt = 1
                     self.nIncohInt = 1
                     self.useLocalTime = True
                     self.profileIndex = 0
                     self.timeZone = 0
                 def getTimeRange(self):
                     datatime = []
                     datatime.append(self.ltctime)
                     datatime.append(self.ltctime + self.timeInterval)
                     datatime = numpy.array(datatime)
                     return datatime
                 def getChannelIndexList(self):
                     return list(range(self.nChannels))
                 def getNoise(self, type=1):
                     if type == 1:
                         noise = self.getNoisebyHildebrand()
                     if type == 2:
                         noise = self.getNoisebySort()
                     if type == 3:
                         noise = self.getNoisebyWindow()
                     return noise
                 @property
                 def timeInterval(self):
                     timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt
                     return timeInterval
                 @property
                 def ippSeconds(self):
                     '''
                     '''
                     return self.ipp_sec
                 noise = property(getNoise, "I'm the 'nHeights' property.")
             class Correlation(JROData):
                 def __init__(self):
                     '''
                     Constructor
                     '''
                     self.radarControllerHeaderObj = RadarControllerHeader()
                     self.systemHeaderObj = SystemHeader()
                     self.type = "Correlation"
                     self.data = None
                     self.dtype = None
                     self.nProfiles = None
                     self.heightList = None
                     self.channelList = None
                     self.flagNoData = True
                     self.flagDiscontinuousBlock = False
                     self.utctime = None
                     self.timeZone = 0
                     self.dstFlag = None
                     self.errorCount = None
                     self.blocksize = None
                     self.flagDecodeData = False  # asumo q la data no esta decodificada
                     self.flagDeflipData = False  # asumo q la data no esta sin flip
                     self.pairsList = None
                     self.nPoints = None
                 def getPairsList(self):
                     return self.pairsList
                 def getNoise(self, mode=2):
                     indR = numpy.where(self.lagR == 0)[0][0]
                     indT = numpy.where(self.lagT == 0)[0][0]
                     jspectra0 = self.data_corr[:, :, indR, :]
                     jspectra = copy.copy(jspectra0)
                     num_chan = jspectra.shape[0]
                     num_hei = jspectra.shape[2]
                     freq_dc = jspectra.shape[1] / 2
                     ind_vel = numpy.array([-2, -1, 1, 2]) + freq_dc
                     if ind_vel[0] < 0:
                         ind_vel[list(range(0, 1))] = ind_vel[list(
                             range(0, 1))] + self.num_prof
                     if mode == 1:
                         jspectra[:, freq_dc, :] = (
                             jspectra[:, ind_vel[1], :] + jspectra[:, ind_vel[2], :]) / 2  # CORRECCION
                     if mode == 2:
                         vel = numpy.array([-2, -1, 1, 2])
                         xx = numpy.zeros([4, 4])
                         for fil in range(4):
                             xx[fil, :] = vel[fil]**numpy.asarray(list(range(4)))
                         xx_inv = numpy.linalg.inv(xx)
                         xx_aux = xx_inv[0, :]
                         for ich in range(num_chan):
                             yy = jspectra[ich, ind_vel, :]
                             jspectra[ich, freq_dc, :] = numpy.dot(xx_aux, yy)
                             junkid = jspectra[ich, freq_dc, :] <= 0
                             cjunkid = sum(junkid)
                             if cjunkid.any():
                                 jspectra[ich, freq_dc, junkid.nonzero()] = (
                                     jspectra[ich, ind_vel[1], junkid] + jspectra[ich, ind_vel[2], junkid]) / 2
                     noise = jspectra0[:, freq_dc, :] - jspectra[:, freq_dc, :]
                     return noise
                 @property
                 def timeInterval(self):
                     return self.ippSeconds * self.nCohInt * self.nProfiles
                 def splitFunctions(self):
                     pairsList = self.pairsList
                     ccf_pairs = []
                     acf_pairs = []
                     ccf_ind = []
                     acf_ind = []
                     for l in range(len(pairsList)):
                         chan0 = pairsList[l][0]
                         chan1 = pairsList[l][1]
                         # Obteniendo pares de Autocorrelacion
                         if chan0 == chan1:
                             acf_pairs.append(chan0)
                             acf_ind.append(l)
                         else:
                             ccf_pairs.append(pairsList[l])
                             ccf_ind.append(l)
                     data_acf = self.data_cf[acf_ind]
                     data_ccf = self.data_cf[ccf_ind]
                     return acf_ind, ccf_ind, acf_pairs, ccf_pairs, data_acf, data_ccf
                 @property
                 def normFactor(self):
                     acf_ind, ccf_ind, acf_pairs, ccf_pairs, data_acf, data_ccf = self.splitFunctions()
                     acf_pairs = numpy.array(acf_pairs)
                     normFactor = numpy.zeros((self.nPairs, self.nHeights))
                     for p in range(self.nPairs):
                         pair = self.pairsList[p]
                         ch0 = pair[0]
                         ch1 = pair[1]
                         ch0_max = numpy.max(data_acf[acf_pairs == ch0, :, :], axis=1)
                         ch1_max = numpy.max(data_acf[acf_pairs == ch1, :, :], axis=1)
                         normFactor[p, :] = numpy.sqrt(ch0_max * ch1_max)
                     return normFactor
             class Parameters(Spectra):
                 groupList = None  # List of Pairs, Groups, etc
                 data_param = None  # Parameters obtained
                 data_pre = None  # Data Pre Parametrization
                 data_SNR = None  # Signal to Noise Ratio
                 abscissaList = None  # Abscissa, can be velocities, lags or time
                 utctimeInit = None  # Initial UTC time
                 paramInterval = None  # Time interval to calculate Parameters in seconds
                 useLocalTime = True
                 # Fitting
                 data_error = None  # Error of the estimation
                 constants = None
                 library = None
                 # Output signal
                 outputInterval = None  # Time interval to calculate output signal in seconds
                 data_output = None  # Out signal
                 nAvg = None
                 noise_estimation = None
                 GauSPC = None  # Fit gaussian SPC
                 def __init__(self):
                     '''
                     Constructor
                     '''
                     self.radarControllerHeaderObj = RadarControllerHeader()
                     self.systemHeaderObj = SystemHeader()
                     self.type = "Parameters"
                     self.timeZone = 0
                 def getTimeRange1(self, interval):
                     datatime = []
                     if self.useLocalTime:
                         time1 = self.utctimeInit - self.timeZone * 60
                     else:
                         time1 = self.utctimeInit
                     datatime.append(time1)
                     datatime.append(time1 + interval)
                     datatime = numpy.array(datatime)
                     return datatime
                 @property
                 def timeInterval(self):
                     if hasattr(self, 'timeInterval1'):
                         return self.timeInterval1
                     else:
                         return self.paramInterval
                 def setValue(self, value):
                     print("This property should not be initialized")
                     return
                 def getNoise(self):
                     return self.spc_noise
                 noise = property(getNoise, setValue, "I'm the 'Noise' property.")
             class PlotterData(object):
                 '''
                 Object to hold data to be plotted
                 '''
                 MAXNUMX = 200
                 MAXNUMY = 200
                 def __init__(self, code, exp_code, localtime=True):
                     self.key = code
                     self.exp_code = exp_code
                     self.ready = False
                     self.flagNoData = False
                     self.localtime = localtime
                     self.data = {}
                     self.meta = {}
                     self.__heights = []
                 def __str__(self):
                     dum = ['{}{}'.format(key, self.shape(key)) for key in self.data]
                     return 'Data[{}][{}]'.format(';'.join(dum), len(self.times))
                 def __len__(self):
                     return len(self.data)
                 def __getitem__(self, key):
                     if isinstance(key, int):
                         return self.data[self.times[key]]
                     elif isinstance(key, str):
                         ret = numpy.array([self.data[x][key] for x in self.times])
                         if ret.ndim > 1:
                             ret = numpy.swapaxes(ret, 0, 1)
                         return ret
                 def __contains__(self, key):
                     return key in self.data[self.min_time]
                 def setup(self):
                     '''
                     Configure object
                     '''
                     self.type = ''
                     self.ready = False
                     del self.data
                     self.data = {}
                     self.__heights = []
                     self.__all_heights = set()
                 def shape(self, key):
                     '''
                     Get the shape of the one-element data for the given key
                     '''
                     if len(self.data[self.min_time][key]):
                         return self.data[self.min_time][key].shape
                     return (0,)
                 def update(self, data, tm, meta={}):
                     '''
                     Update data object with new dataOut
                     '''
                     self.data[tm] = data
                     for key, value in meta.items():
                         setattr(self, key, value)
                 def normalize_heights(self):
                     '''
                     Ensure same-dimension of the data for different heighList
                     '''
                     H = numpy.array(list(self.__all_heights))
                     H.sort()
                     for key in self.data:
                         shape = self.shape(key)[:-1] + H.shape
                         for tm, obj in list(self.data[key].items()):
                             h = self.__heights[self.times.tolist().index(tm)]
                             if H.size == h.size:
                                 continue
                             index = numpy.where(numpy.in1d(H, h))[0]
                             dummy = numpy.zeros(shape) + numpy.nan
                             if len(shape) == 2:
                                 dummy[:, index] = obj
                             else:
                                 dummy[index] = obj
                             self.data[key][tm] = dummy
                     self.__heights = [H for tm in self.times]
                 def jsonify(self, tm, plot_name, plot_type, decimate=False):
                     '''
                     Convert data to json
                     '''
                     meta = {}
                     meta['xrange'] = []
                     dy = int(len(self.yrange)/self.MAXNUMY) + 1
                     tmp = self.data[tm][self.key]
                     shape = tmp.shape
                     if len(shape) == 2:
                         data = self.roundFloats(self.data[tm][self.key][::, ::dy].tolist())
                     elif len(shape) == 3:
                         dx = int(self.data[tm][self.key].shape[1]/self.MAXNUMX) + 1
                         data = self.roundFloats(
                             self.data[tm][self.key][::, ::dx, ::dy].tolist())
                         meta['xrange'] = self.roundFloats(self.xrange[2][::dx].tolist())
                     else:
                         data = self.roundFloats(self.data[tm][self.key].tolist())
                     ret = {
                         'plot': plot_name,
                         'code': self.exp_code,
                         'time': float(tm),
                         'data': data,
                         }
                     meta['type'] = plot_type
                     meta['interval'] = float(self.interval)
                     meta['localtime'] = self.localtime
                     meta['yrange'] = self.roundFloats(self.yrange[::dy].tolist())
                     meta.update(self.meta)
                     ret['metadata'] = meta
                     return json.dumps(ret)
                 @property
                 def times(self):
                     '''
                     Return the list of times of the current data
                     '''
                     ret = [t for t in self.data]
                     ret.sort()
                     return numpy.array(ret)
                 @property
                 def min_time(self):
                     '''
                     Return the minimun time value
                     '''
                     return self.times[0]
                 @property
                 def max_time(self):
                     '''
                     Return the maximun time value
                     '''
                     return self.times[-1]
                 # @property
                 # def heights(self):
                 #     '''
                 #     Return the list of heights of the current data
                 #     '''
                 #     return numpy.array(self.__heights[-1])
                 @staticmethod
                 def roundFloats(obj):
                     if isinstance(obj, list):
                         return list(map(PlotterData.roundFloats, obj))
                     elif isinstance(obj, float):
                         return round(obj, 2)

schainpy/model/graphics/jroplot_spectra.py +4 -3

             # Copyright (c) 2012-2020 Jicamarca Radio Observatory
             # All rights reserved.
             #
             # Distributed under the terms of the BSD 3-clause license.
             """Classes to plot Spectra data
             """
             import os
             import numpy
             from schainpy.model.graphics.jroplot_base import Plot, plt, log
             from itertools import combinations
             class SpectraPlot(Plot):
                 '''
                 Plot for Spectra data
                 '''
                 CODE = 'spc'
                 colormap = 'jet'
                 plot_type = 'pcolor'
                 buffering = False
                 channelList = []
                 def setup(self):
                     self.nplots = len(self.data.channels)
                     self.ncols = int(numpy.sqrt(self.nplots) + 0.9)
                     self.nrows = int((1.0 * self.nplots / self.ncols) + 0.9)
                     self.height = 2.6 * self.nrows
                     self.cb_label = 'dB'
                     if self.showprofile:
                         self.width = 4 * self.ncols
                     else:
                         self.width = 3.5 * self.ncols
                     self.plots_adjust.update({'wspace': 0.4, 'hspace':0.4, 'left': 0.1, 'right': 0.9, 'bottom': 0.08})
                     self.ylabel = 'Range [km]'
                 def update_list(self,dataOut):
                     if len(self.channelList) == 0:
                         self.channelList = dataOut.channelList
                 def update(self, dataOut):
                     self.update_list(dataOut)
                     data = {}
                     meta = {}
                     spc = 10*numpy.log10(dataOut.data_spc/dataOut.normFactor)
                     data['spc'] = spc
                     data['rti'] = dataOut.getPower()
                     data['noise'] = 10*numpy.log10(dataOut.getNoise()/dataOut.normFactor)
                     meta['xrange'] = (dataOut.getFreqRange(1)/1000., dataOut.getAcfRange(1), dataOut.getVelRange(1))
                     if self.CODE == 'spc_moments':
                         data['moments'] = dataOut.moments
                     return data, meta
                 def plot(self):
                     if self.xaxis == "frequency":
                         x = self.data.xrange[0]
                         self.xlabel = "Frequency (kHz)"
                     elif self.xaxis == "time":
                         x = self.data.xrange[1]
                         self.xlabel = "Time (ms)"
                     else:
                         x = self.data.xrange[2]
                         self.xlabel = "Velocity (m/s)"
                     if self.CODE == 'spc_moments':
                         x = self.data.xrange[2]
                         self.xlabel = "Velocity (m/s)"
                     self.titles = []
                     y = self.data.yrange
                     self.y = y
                     data = self.data[-1]
                     z = data['spc']
                     for n, ax in enumerate(self.axes):
                         noise = data['noise'][n]
                         if self.CODE == 'spc_moments':
                             mean = data['moments'][n, 1]
                         if ax.firsttime:
                             self.xmax = self.xmax if self.xmax else numpy.nanmax(x)
                             self.xmin = self.xmin if self.xmin else -self.xmax
                             self.zmin = self.zmin if self.zmin else numpy.nanmin(z)
                             self.zmax = self.zmax if self.zmax else numpy.nanmax(z)
                             ax.plt = ax.pcolormesh(x, y, z[n].T,
                                                    vmin=self.zmin,
                                                    vmax=self.zmax,
                                                    cmap=plt.get_cmap(self.colormap)
                                                    )
                             if self.showprofile:
                                 ax.plt_profile = self.pf_axes[n].plot(
                                     data['rti'][n], y)[0]
                                 ax.plt_noise = self.pf_axes[n].plot(numpy.repeat(noise, len(y)), y,
                                                                     color="k", linestyle="dashed", lw=1)[0]
                             if self.CODE == 'spc_moments':
                                 ax.plt_mean = ax.plot(mean, y, color='k')[0]
                         else:
                             ax.plt.set_array(z[n].T.ravel())
                             if self.showprofile:
                                 ax.plt_profile.set_data(data['rti'][n], y)
                                 ax.plt_noise.set_data(numpy.repeat(noise, len(y)), y)
                             if self.CODE == 'spc_moments':
                                 ax.plt_mean.set_data(mean, y)
                         self.titles.append('CH {}: {:3.2f}dB'.format(self.channelList[n], noise))
             class CrossSpectraPlot(Plot):
                 CODE = 'cspc'
                 colormap = 'jet'
                 plot_type = 'pcolor'
                 zmin_coh = None
                 zmax_coh = None
                 zmin_phase = None
                 zmax_phase = None
                 realChannels = None
                 crossPairs = None
                 def setup(self):
                     self.ncols = 4
                     self.nplots = len(self.data.pairs) * 2
                     self.nrows = int((1.0 * self.nplots / self.ncols) + 0.9)
                     self.width = 3.1 * self.ncols
                     self.height = 2.6 * self.nrows
                     self.ylabel = 'Range [km]'
                     self.showprofile = False
                     self.plots_adjust.update({'left': 0.08, 'right': 0.92, 'wspace': 0.5, 'hspace':0.4, 'top':0.95, 'bottom': 0.08})
                 def update(self, dataOut):
                     data = {}
                     meta = {}
                     spc = dataOut.data_spc
                     cspc = dataOut.data_cspc
                     meta['xrange'] = (dataOut.getFreqRange(1)/1000., dataOut.getAcfRange(1), dataOut.getVelRange(1))
                     rawPairs = list(combinations(list(range(dataOut.nChannels)), 2))
                     meta['pairs'] = rawPairs
                     if self.crossPairs == None:
                         self.crossPairs = dataOut.pairsList
                     tmp = []
                     for n, pair in enumerate(meta['pairs']):
                         out = cspc[n] / numpy.sqrt(spc[pair[0]] * spc[pair[1]])
                         coh = numpy.abs(out)
                         phase = numpy.arctan2(out.imag, out.real) * 180 / numpy.pi
                         tmp.append(coh)
                         tmp.append(phase)
                     data['cspc'] = numpy.array(tmp)
                     return data, meta
                 def plot(self):
                     if self.xaxis == "frequency":
                         x = self.data.xrange[0]
                         self.xlabel = "Frequency (kHz)"
                     elif self.xaxis == "time":
                         x = self.data.xrange[1]
                         self.xlabel = "Time (ms)"
                     else:
                         x = self.data.xrange[2]
                         self.xlabel = "Velocity (m/s)"
                     self.titles = []
                     y = self.data.yrange
                     self.y = y
                     data = self.data[-1]
                     cspc = data['cspc']
                     for n in range(len(self.data.pairs)):
                         pair = self.crossPairs[n]
                         coh = cspc[n*2]
                         phase = cspc[n*2+1]
                         ax = self.axes[2 * n]
                         if ax.firsttime:
                             ax.plt = ax.pcolormesh(x, y, coh.T,
                                                    vmin=self.zmin_coh,
                                                    vmax=self.zmax_coh,
                                                    cmap=plt.get_cmap(self.colormap_coh)
                                                    )
                         else:
                             ax.plt.set_array(coh.T.ravel())
                         self.titles.append(
                             'Coherence Ch{} * Ch{}'.format(pair[0], pair[1]))
                         ax = self.axes[2 * n + 1]
                         if ax.firsttime:
                             ax.plt = ax.pcolormesh(x, y, phase.T,
                                                    vmin=-180,
                                                    vmax=180,
                                                    cmap=plt.get_cmap(self.colormap_phase)
                                                    )
                         else:
                             ax.plt.set_array(phase.T.ravel())
                         self.titles.append('Phase CH{} * CH{}'.format(pair[0], pair[1]))
             class RTIPlot(Plot):
                 '''
                 Plot for RTI data
                 '''
                 CODE = 'rti'
                 colormap = 'jet'
                 plot_type = 'pcolorbuffer'
                 titles = None
                 channelList = []
                 def setup(self):
                     self.xaxis = 'time'
                     self.ncols = 1
                     #print("dataChannels ",self.data.channels)
                     self.nrows = len(self.data.channels)
                     self.nplots = len(self.data.channels)
                     self.ylabel = 'Range [km]'
                     self.xlabel = 'Time'
                     self.cb_label = 'dB'
                     self.plots_adjust.update({'hspace':0.8, 'left': 0.1, 'bottom': 0.08, 'right':0.95})
                     self.titles = ['{} Channel {}'.format(
                         self.CODE.upper(), x) for x in range(self.nplots)]
                 def update_list(self,dataOut):
                     self.channelList = dataOut.channelList
                 def update(self, dataOut):
                     if len(self.channelList) == 0:
                         self.update_list(dataOut)
                     data = {}
                     meta = {}
                     data['rti'] = dataOut.getPower()
                     data['noise'] = 10*numpy.log10(dataOut.getNoise()/dataOut.normFactor)
                     return data, meta
                 def plot(self):
                     self.x = self.data.times
                     self.y = self.data.yrange
                     self.z = self.data[self.CODE]
                     self.z = numpy.array(self.z, dtype=float)
                     self.z = numpy.ma.masked_invalid(self.z)
                     try:
                         if self.channelList != None:
                             self.titles = ['{} Channel {}'.format(
                                 self.CODE.upper(), x) for x in self.channelList]
                     except:
                         if self.channelList.any() != None:
                             self.titles = ['{} Channel {}'.format(
                                 self.CODE.upper(), x) for x in self.channelList]
                     if self.decimation is None:
                         x, y, z = self.fill_gaps(self.x, self.y, self.z)
                     else:
                         x, y, z = self.fill_gaps(*self.decimate())
                     dummy_var = self.axes #Extrañamente esto actualiza el valor axes
                     for n, ax in enumerate(self.axes):
                         self.zmin = self.zmin if self.zmin else numpy.min(self.z)
                         self.zmax = self.zmax if self.zmax else numpy.max(self.z)
                         data = self.data[-1]
                         if ax.firsttime:
                             ax.plt = ax.pcolormesh(x, y, z[n].T,
                                                    vmin=self.zmin,
                                                    vmax=self.zmax,
                                                    cmap=plt.get_cmap(self.colormap)
                                                    )
                             if self.showprofile:
                                 ax.plot_profile = self.pf_axes[n].plot(data[self.CODE][n], self.y)[0]
                                 if "noise" in self.data:
                                     ax.plot_noise = self.pf_axes[n].plot(numpy.repeat(data['noise'][n], len(self.y)), self.y,
                                                                      color="k", linestyle="dashed", lw=1)[0]
                         else:
                             ax.collections.remove(ax.collections[0])
                             ax.plt = ax.pcolormesh(x, y, z[n].T,
                                                    vmin=self.zmin,
                                                    vmax=self.zmax,
                                                    cmap=plt.get_cmap(self.colormap)
                                                    )
                             if self.showprofile:
                                 ax.plot_profile.set_data(data[self.CODE][n], self.y)
                                 if "noise" in self.data:
                                     ax.plot_noise.set_data(numpy.repeat(
                                     data['noise'][n], len(self.y)), self.y)
             class CoherencePlot(RTIPlot):
                 '''
                 Plot for Coherence data
                 '''
                 CODE = 'coh'
                 def setup(self):
                     self.xaxis = 'time'
                     self.ncols = 1
                     self.nrows = len(self.data.pairs)
                     self.nplots = len(self.data.pairs)
                     self.ylabel = 'Range [km]'
                     self.xlabel = 'Time'
                     self.plots_adjust.update({'hspace':0.6, 'left': 0.1, 'bottom': 0.1,'right':0.95})
                     if self.CODE == 'coh':
                         self.cb_label = ''
                         self.titles = [
                             'Coherence Map Ch{} * Ch{}'.format(x[0], x[1]) for x in self.data.pairs]
                     else:
                         self.cb_label = 'Degrees'
                         self.titles = [
                             'Phase Map Ch{} * Ch{}'.format(x[0], x[1]) for x in self.data.pairs]
                 def update(self, dataOut):
                     self.update_list(dataOut)
                     data = {}
                     meta = {}
                     data['coh'] = dataOut.getCoherence()
                     meta['pairs'] = dataOut.pairsList
                     return data, meta
             class PhasePlot(CoherencePlot):
                 '''
                 Plot for Phase map data
                 '''
                 CODE = 'phase'
                 colormap = 'seismic'
                 def update(self, dataOut):
                     data = {}
                     meta = {}
                     data['phase'] = dataOut.getCoherence(phase=True)
                     meta['pairs'] = dataOut.pairsList
                     return data, meta
             class NoisePlot(Plot):
                 '''
                 Plot for noise
                 '''
                 CODE = 'noise'
                 plot_type = 'scatterbuffer'
                 def setup(self):
                     self.xaxis = 'time'
                     self.ncols = 1
                     self.nrows = 1
                     self.nplots = 1
                     self.ylabel = 'Intensity [dB]'
                     self.xlabel = 'Time'
                     self.titles = ['Noise']
                     self.colorbar = False
                     self.plots_adjust.update({'right': 0.85 })
                 def update(self, dataOut):
                     data = {}
                     meta = {}
-                    data['noise'] = 10*numpy.log10(dataOut.getNoise()/dataOut.normFactor).reshape(dataOut.nChannels, 1)
+                    noise =  10*numpy.log10(dataOut.getNoise()/dataOut.normFactor).reshape(dataOut.nChannels, 1)
+                    data['noise'] = noise
                     meta['yrange'] = numpy.array([])
                     return data, meta
                 def plot(self):
                     x = self.data.times
                     xmin = self.data.min_time
                     xmax = xmin + self.xrange * 60 * 60
                     Y = self.data['noise']
                     if self.axes[0].firsttime:
-                        self.ymin = numpy.nanmin(Y) - 5
+                        if self.ymin is None: self.ymin = numpy.nanmin(Y) - 5
-                        self.ymax = numpy.nanmax(Y) + 5
+                        if self.ymax is None: self.ymax = numpy.nanmax(Y) + 5
                         for ch in self.data.channels:
                             y = Y[ch]
                             self.axes[0].plot(x, y, lw=1, label='Ch{}'.format(ch))
                         plt.legend(bbox_to_anchor=(1.18, 1.0))
                     else:
                         for ch in self.data.channels:
                             y = Y[ch]
                             self.axes[0].lines[ch].set_data(x, y)
             class PowerProfilePlot(Plot):
                 CODE = 'pow_profile'
                 plot_type = 'scatter'
                 def setup(self):
                     self.ncols = 1
                     self.nrows = 1
                     self.nplots = 1
                     self.height = 4
                     self.width = 3
                     self.ylabel = 'Range [km]'
                     self.xlabel = 'Intensity [dB]'
                     self.titles = ['Power Profile']
                     self.colorbar = False
                 def update(self, dataOut):
                     data = {}
                     meta = {}
                     data[self.CODE] = dataOut.getPower()
                     return data, meta
                 def plot(self):
                     y = self.data.yrange
                     self.y = y
                     x = self.data[-1][self.CODE]
                     if self.xmin is None: self.xmin = numpy.nanmin(x)*0.9
                     if self.xmax is None: self.xmax = numpy.nanmax(x)*1.1
                     if self.axes[0].firsttime:
                         for ch in self.data.channels:
                             self.axes[0].plot(x[ch], y, lw=1, label='Ch{}'.format(ch))
                         plt.legend()
                     else:
                         for ch in self.data.channels:
                             self.axes[0].lines[ch].set_data(x[ch], y)
             class SpectraCutPlot(Plot):
                 CODE = 'spc_cut'
                 plot_type = 'scatter'
                 buffering = False
                 heights = []
                 channelList = []
                 maintitle = "Spectra Cuts"
                 def setup(self):
                     self.nplots = len(self.data.channels)
                     self.ncols = int(numpy.sqrt(self.nplots) + 0.9)
                     self.nrows = int((1.0 * self.nplots / self.ncols) + 0.9)
                     self.width = 3.6 * self.ncols + 1.5
                     self.height = 3 * self.nrows
                     self.ylabel = 'Power [dB]'
                     self.colorbar = False
                     self.plots_adjust.update({'left':0.1, 'hspace':0.3, 'right': 0.75, 'bottom':0.08})
                     if self.selectedHeight:
                         self.maintitle = "Spectra Cut for %d km " %(int(self.selectedHeight))
                 def update(self, dataOut):
                     if len(self.channelList) == 0:
                         self.channelList = dataOut.channelList
                     self.heights = dataOut.heightList
                     if self.selectedHeight:
                         index_list = numpy.where(self.heights >= self.selectedHeight)
                         self.height_index = index_list[0]
                         self.height_index = self.height_index[0]
                         #print(self.height_index)
                     data = {}
                     meta = {}
                     spc = 10*numpy.log10(dataOut.data_spc/dataOut.normFactor)
                     if self.selectedHeight:
                         data['spc'] = spc[:,:,self.height_index]
                     else:
                         data['spc'] = spc
                     meta['xrange'] = (dataOut.getFreqRange(1)/1000., dataOut.getAcfRange(1), dataOut.getVelRange(1))
                     return data, meta
                 def plot(self):
                     if self.xaxis == "frequency":
                         x = self.data.xrange[0][1:]
                         self.xlabel = "Frequency (kHz)"
                     elif self.xaxis == "time":
                         x = self.data.xrange[1]
                         self.xlabel = "Time (ms)"
                     else:
                         x = self.data.xrange[2]
                         self.xlabel = "Velocity (m/s)"
                     self.titles = []
                     y = self.data.yrange
                     z = self.data[-1]['spc']
                     #print(z.shape)
                     if self.height_index:
                         index = numpy.array(self.height_index)
                     else:
                         index = numpy.arange(0, len(y), int((len(y))/9))
                     for n, ax in enumerate(self.axes):
                         if ax.firsttime:
                             self.xmax = self.xmax if self.xmax else numpy.nanmax(x)
                             self.xmin = self.xmin if self.xmin else -self.xmax
                             self.ymin = self.ymin if self.ymin else numpy.nanmin(z)
                             self.ymax = self.ymax if self.ymax else numpy.nanmax(z)
                             if self.selectedHeight:
                                 ax.plt = ax.plot(x, z[n,:])
                             else:
                                 ax.plt = ax.plot(x, z[n, :, index].T)
                                 labels = ['Range = {:2.1f}km'.format(y[i]) for i in index]
                                 self.figures[0].legend(ax.plt, labels, loc='center right')
                         else:
                             for i, line in enumerate(ax.plt):
                                 if self.selectedHeight:
                                     line.set_data(x, z[n, :])
                                 else:
                                     line.set_data(x, z[n, :, index[i]])
                         self.titles.append('CH {}'.format(self.channelList[n]))
                     plt.suptitle(self.maintitle)
             class BeaconPhase(Plot):
                 __isConfig = None
                 __nsubplots = None
                 PREFIX = 'beacon_phase'
                 def __init__(self):
                     Plot.__init__(self)
                     self.timerange = 24*60*60
                     self.isConfig = False
                     self.__nsubplots = 1
                     self.counter_imagwr = 0
                     self.WIDTH = 800
                     self.HEIGHT = 400
                     self.WIDTHPROF = 120
                     self.HEIGHTPROF = 0
                     self.xdata = None
                     self.ydata = None
                     self.PLOT_CODE = BEACON_CODE
                     self.FTP_WEI = None
                     self.EXP_CODE = None
                     self.SUB_EXP_CODE = None
                     self.PLOT_POS = None
                     self.filename_phase = None
                     self.figfile = None
                     self.xmin = None
                     self.xmax = None
                 def getSubplots(self):
                     ncol = 1
                     nrow = 1
                     return nrow, ncol
                 def setup(self, id, nplots, wintitle, showprofile=True, show=True):
                     self.__showprofile = showprofile
                     self.nplots = nplots
                     ncolspan = 7
                     colspan = 6
                     self.__nsubplots = 2
                     self.createFigure(id = id,
                                       wintitle = wintitle,
                                       widthplot = self.WIDTH+self.WIDTHPROF,
                                       heightplot = self.HEIGHT+self.HEIGHTPROF,
                                       show=show)
                     nrow, ncol = self.getSubplots()
                     self.addAxes(nrow, ncol*ncolspan, 0, 0, colspan, 1)
                 def save_phase(self, filename_phase):
                     f = open(filename_phase,'w+')
                     f.write('\n\n')
                     f.write('JICAMARCA RADIO OBSERVATORY - Beacon Phase \n')
                     f.write('DD MM YYYY  HH MM SS   pair(2,0) pair(2,1) pair(2,3) pair(2,4)\n\n' )
                     f.close()
                 def save_data(self, filename_phase, data, data_datetime):
                     f=open(filename_phase,'a')
                     timetuple_data = data_datetime.timetuple()
                     day = str(timetuple_data.tm_mday)
                     month = str(timetuple_data.tm_mon)
                     year = str(timetuple_data.tm_year)
                     hour = str(timetuple_data.tm_hour)
                     minute = str(timetuple_data.tm_min)
                     second = str(timetuple_data.tm_sec)
                     f.write(day+' '+month+' '+year+'  '+hour+' '+minute+' '+second+'   '+str(data[0])+'   '+str(data[1])+'   '+str(data[2])+'   '+str(data[3])+'\n')
                     f.close()
                 def plot(self):
                     log.warning('TODO: Not yet implemented...')
                 def run(self, dataOut, id, wintitle="", pairsList=None, showprofile='True',
                         xmin=None, xmax=None, ymin=None, ymax=None, hmin=None, hmax=None,
                         timerange=None,
                         save=False, figpath='./', figfile=None, show=True, ftp=False, wr_period=1,
                         server=None, folder=None, username=None, password=None,
                         ftp_wei=0, exp_code=0, sub_exp_code=0, plot_pos=0):
                     if dataOut.flagNoData:
                         return dataOut
                     if not isTimeInHourRange(dataOut.datatime, xmin, xmax):
                         return
                     if pairsList == None:
                         pairsIndexList = dataOut.pairsIndexList[:10]
                     else:
                         pairsIndexList = []
                         for pair in pairsList:
                             if pair not in dataOut.pairsList:
                                 raise ValueError("Pair %s is not in dataOut.pairsList" %(pair))
                             pairsIndexList.append(dataOut.pairsList.index(pair))
                     if pairsIndexList == []:
                         return
              #         if len(pairsIndexList) > 4:
              #             pairsIndexList = pairsIndexList[0:4]
                     hmin_index = None
                     hmax_index = None
                     if hmin != None and hmax != None:
                         indexes = numpy.arange(dataOut.nHeights)
                         hmin_list = indexes[dataOut.heightList >= hmin]
                         hmax_list = indexes[dataOut.heightList <= hmax]
                         if hmin_list.any():
                             hmin_index = hmin_list[0]
                         if hmax_list.any():
                             hmax_index = hmax_list[-1]+1
                     x = dataOut.getTimeRange()
                     thisDatetime = dataOut.datatime
                     title = wintitle + " Signal Phase" # : %s" %(thisDatetime.strftime("%d-%b-%Y"))
                     xlabel = "Local Time"
                     ylabel = "Phase (degrees)"
                     update_figfile = False
                     nplots = len(pairsIndexList)
                     #phase = numpy.zeros((len(pairsIndexList),len(dataOut.beacon_heiIndexList)))
                     phase_beacon = numpy.zeros(len(pairsIndexList))
                     for i in range(nplots):
                         pair = dataOut.pairsList[pairsIndexList[i]]
                         ccf = numpy.average(dataOut.data_cspc[pairsIndexList[i], :, hmin_index:hmax_index], axis=0)
                         powa = numpy.average(dataOut.data_spc[pair[0], :, hmin_index:hmax_index], axis=0)
                         powb = numpy.average(dataOut.data_spc[pair[1], :, hmin_index:hmax_index], axis=0)
                         avgcoherenceComplex = ccf/numpy.sqrt(powa*powb)
                         phase = numpy.arctan2(avgcoherenceComplex.imag, avgcoherenceComplex.real)*180/numpy.pi
                         if dataOut.beacon_heiIndexList:
                             phase_beacon[i] = numpy.average(phase[dataOut.beacon_heiIndexList])
                         else:
                             phase_beacon[i] = numpy.average(phase)
                     if not self.isConfig:
                         nplots = len(pairsIndexList)
                         self.setup(id=id,
                                    nplots=nplots,
                                    wintitle=wintitle,
                                    showprofile=showprofile,
                                    show=show)
                         if timerange != None:
                             self.timerange = timerange
                         self.xmin, self.xmax = self.getTimeLim(x, xmin, xmax, timerange)
                         if ymin == None: ymin = 0
                         if ymax == None: ymax = 360
                         self.FTP_WEI = ftp_wei
                         self.EXP_CODE = exp_code
                         self.SUB_EXP_CODE = sub_exp_code
                         self.PLOT_POS = plot_pos
                         self.name = thisDatetime.strftime("%Y%m%d_%H%M%S")
                         self.isConfig = True
                         self.figfile = figfile
                         self.xdata = numpy.array([])
                         self.ydata = numpy.array([])
                         update_figfile = True
                         #open file beacon phase
                         path = '%s%03d' %(self.PREFIX, self.id)
                         beacon_file = os.path.join(path,'%s.txt'%self.name)
                         self.filename_phase = os.path.join(figpath,beacon_file)
                         #self.save_phase(self.filename_phase)
                     #store data beacon phase
                     #self.save_data(self.filename_phase, phase_beacon, thisDatetime)
                     self.setWinTitle(title)
                     title = "Phase Plot %s" %(thisDatetime.strftime("%Y/%m/%d %H:%M:%S"))
                     legendlabels = ["Pair (%d,%d)"%(pair[0], pair[1]) for pair in dataOut.pairsList]
                     axes = self.axesList[0]
                     self.xdata = numpy.hstack((self.xdata, x[0:1]))
                     if len(self.ydata)==0:
                         self.ydata = phase_beacon.reshape(-1,1)
                     else:
                         self.ydata = numpy.hstack((self.ydata, phase_beacon.reshape(-1,1)))
                     axes.pmultilineyaxis(x=self.xdata, y=self.ydata,
                                 xmin=self.xmin, xmax=self.xmax, ymin=ymin, ymax=ymax,
                                 xlabel=xlabel, ylabel=ylabel, title=title, legendlabels=legendlabels, marker='x', markersize=8, linestyle="solid",
                                 XAxisAsTime=True, grid='both'
                                 )
                     self.draw()
                     if dataOut.ltctime >= self.xmax:
                         self.counter_imagwr = wr_period
                         self.isConfig = False
                         update_figfile = True
                     self.save(figpath=figpath,
                               figfile=figfile,
                               save=save,
                               ftp=ftp,
                               wr_period=wr_period,
                               thisDatetime=thisDatetime,
                               update_figfile=update_figfile)
                     return dataOut
             class NoiselessSpectraPlot(Plot):
                 '''
                 Plot for Spectra data, subtracting
                 the noise in all channels, using for
                 amisr-14 data
                 '''
                 CODE = 'noiseless_spc'
                 colormap = 'nipy_spectral'
                 plot_type = 'pcolor'
                 buffering = False
                 channelList = []
                 def setup(self):
                     self.nplots = len(self.data.channels)
                     self.ncols = int(numpy.sqrt(self.nplots) + 0.9)
                     self.nrows = int((1.0 * self.nplots / self.ncols) + 0.9)
                     self.height = 2.6 * self.nrows
                     self.cb_label = 'dB'
                     if self.showprofile:
                         self.width = 4 * self.ncols
                     else:
                         self.width = 3.5 * self.ncols
                     self.plots_adjust.update({'wspace': 0.4, 'hspace':0.4, 'left': 0.1, 'right': 0.9, 'bottom': 0.08})
                     self.ylabel = 'Range [km]'
                 def update_list(self,dataOut):
                     if len(self.channelList) == 0:
                         self.channelList = dataOut.channelList
                 def update(self, dataOut):
                     self.update_list(dataOut)
                     data = {}
                     meta = {}
                     n0 = 10*numpy.log10(dataOut.getNoise()/dataOut.normFactor)
                     (nch, nff, nh) = dataOut.data_spc.shape
                     n1 = numpy.repeat(n0,nh, axis=0).reshape((nch,nh))
                     noise = numpy.repeat(n1,nff, axis=1).reshape((nch,nff,nh))
                     #print(noise.shape, "noise", noise)
                     spc = 10*numpy.log10(dataOut.data_spc/dataOut.normFactor) - noise
                     data['spc'] = spc
                     data['rti'] = dataOut.getPower() - n1
                     data['noise'] = n0
                     meta['xrange'] = (dataOut.getFreqRange(1)/1000., dataOut.getAcfRange(1), dataOut.getVelRange(1))
                     return data, meta
                 def plot(self):
                     if self.xaxis == "frequency":
                         x = self.data.xrange[0]
                         self.xlabel = "Frequency (kHz)"
                     elif self.xaxis == "time":
                         x = self.data.xrange[1]
                         self.xlabel = "Time (ms)"
                     else:
                         x = self.data.xrange[2]
                         self.xlabel = "Velocity (m/s)"
                     self.titles = []
                     y = self.data.yrange
                     self.y = y
                     data = self.data[-1]
                     z = data['spc']
                     for n, ax in enumerate(self.axes):
                         noise = data['noise'][n]
                         if ax.firsttime:
                             self.xmax = self.xmax if self.xmax else numpy.nanmax(x)
                             self.xmin = self.xmin if self.xmin else -self.xmax
                             self.zmin = self.zmin if self.zmin else numpy.nanmin(z)
                             self.zmax = self.zmax if self.zmax else numpy.nanmax(z)
                             ax.plt = ax.pcolormesh(x, y, z[n].T,
                                                    vmin=self.zmin,
                                                    vmax=self.zmax,
                                                    cmap=plt.get_cmap(self.colormap)
                                                    )
                             if self.showprofile:
                                 ax.plt_profile = self.pf_axes[n].plot(
                                     data['rti'][n], y)[0]
                                 ax.plt_noise = self.pf_axes[n].plot(numpy.repeat(noise, len(y)), y,
                                                                     color="k", linestyle="dashed", lw=1)[0]
                         else:
                             ax.plt.set_array(z[n].T.ravel())
                             if self.showprofile:
                                 ax.plt_profile.set_data(data['rti'][n], y)
                                 ax.plt_noise.set_data(numpy.repeat(noise, len(y)), y)
                         self.titles.append('CH {}: {:3.2f}dB'.format(self.channelList[n], noise))
             class NoiselessRTIPlot(Plot):
                 '''
                 Plot for RTI data
                 '''
                 CODE = 'noiseless_rti'
                 colormap = 'jet'
                 plot_type = 'pcolorbuffer'
                 titles = None
                 channelList = []
                 def setup(self):
                     self.xaxis = 'time'
                     self.ncols = 1
                     #print("dataChannels ",self.data.channels)
                     self.nrows = len(self.data.channels)
                     self.nplots = len(self.data.channels)
                     self.ylabel = 'Range [km]'
                     self.xlabel = 'Time'
                     self.cb_label = 'dB'
                     self.plots_adjust.update({'hspace':0.8, 'left': 0.1, 'bottom': 0.08, 'right':0.95})
                     self.titles = ['{} Channel {}'.format(
                         self.CODE.upper(), x) for x in range(self.nplots)]
                 def update_list(self,dataOut):
                     self.channelList = dataOut.channelList
                 def update(self, dataOut):
                     if len(self.channelList) == 0:
                         self.update_list(dataOut)
                     data = {}
                     meta = {}
                     n0 = 10*numpy.log10(dataOut.getNoise()/dataOut.normFactor)
                     (nch, nff, nh) = dataOut.data_spc.shape
                     noise = numpy.repeat(n0,nh, axis=0).reshape((nch,nh))
                     data['noiseless_rti'] = dataOut.getPower() - noise
                     data['noise'] = 10*numpy.log10(dataOut.getNoise()/dataOut.normFactor)
                     return data, meta
                 def plot(self):
                     self.x = self.data.times
                     self.y = self.data.yrange
                     self.z = self.data['noiseless_rti']
                     self.z = numpy.array(self.z, dtype=float)
                     self.z = numpy.ma.masked_invalid(self.z)
                     try:
                         if self.channelList != None:
                             self.titles = ['{} Channel {}'.format(
                                 self.CODE.upper(), x) for x in self.channelList]
                     except:
                         if self.channelList.any() != None:
                             self.titles = ['{} Channel {}'.format(
                                 self.CODE.upper(), x) for x in self.channelList]
                     if self.decimation is None:
                         x, y, z = self.fill_gaps(self.x, self.y, self.z)
                     else:
                         x, y, z = self.fill_gaps(*self.decimate())
                     dummy_var = self.axes #Extrañamente esto actualiza el valor axes
                     for n, ax in enumerate(self.axes):
                         self.zmin = self.zmin if self.zmin else numpy.min(self.z)
                         self.zmax = self.zmax if self.zmax else numpy.max(self.z)
                         data = self.data[-1]
                         if ax.firsttime:
                             ax.plt = ax.pcolormesh(x, y, z[n].T,
                                                    vmin=self.zmin,
                                                    vmax=self.zmax,
                                                    cmap=plt.get_cmap(self.colormap)
                                                    )
                             if self.showprofile:
                                 ax.plot_profile = self.pf_axes[n].plot(data['noiseless_rti'][n], self.y)[0]
                                 if "noise" in self.data:
                                     ax.plot_noise = self.pf_axes[n].plot(numpy.repeat(data['noise'][n], len(self.y)), self.y,
                                                                      color="k", linestyle="dashed", lw=1)[0]
                         else:
                             ax.collections.remove(ax.collections[0])
                             ax.plt = ax.pcolormesh(x, y, z[n].T,
                                                    vmin=self.zmin,
                                                    vmax=self.zmax,
                                                    cmap=plt.get_cmap(self.colormap)
                                                    )
                             if self.showprofile:
                                 ax.plot_profile.set_data(data['noiseless_rti'][n], self.y)
                                 if "noise" in self.data:
                                     ax.plot_noise.set_data(numpy.repeat(
                                     data['noise'][n], len(self.y)), self.y)

schainpy/model/proc/jroproc_spectra.py +126 0

             # Copyright (c) 2012-2020 Jicamarca Radio Observatory
             # All rights reserved.
             #
             # Distributed under the terms of the BSD 3-clause license.
             """Spectra processing Unit and operations
             Here you will find the processing unit `SpectraProc` and several operations
             to work with Spectra data type
             """
             import time
             import itertools
             import numpy
             import math
             from schainpy.model.proc.jroproc_base import ProcessingUnit, MPDecorator, Operation
             from schainpy.model.data.jrodata import Spectra
             from schainpy.model.data.jrodata import hildebrand_sekhon
             from schainpy.utils import log
             from scipy.optimize import curve_fit
             class SpectraProc(ProcessingUnit):
                 def __init__(self):
                     ProcessingUnit.__init__(self)
                     self.buffer = None
                     self.firstdatatime = None
                     self.profIndex = 0
                     self.dataOut = Spectra()
                     self.id_min = None
                     self.id_max = None
                     self.setupReq = False #Agregar a todas las unidades de proc
                 def __updateSpecFromVoltage(self):
                     self.dataOut.timeZone = self.dataIn.timeZone
                     self.dataOut.dstFlag = self.dataIn.dstFlag
                     self.dataOut.errorCount = self.dataIn.errorCount
                     self.dataOut.useLocalTime = self.dataIn.useLocalTime
                     try:
                         self.dataOut.processingHeaderObj = self.dataIn.processingHeaderObj.copy()
                     except:
                         pass
                     self.dataOut.radarControllerHeaderObj = self.dataIn.radarControllerHeaderObj.copy()
                     self.dataOut.systemHeaderObj = self.dataIn.systemHeaderObj.copy()
                     self.dataOut.channelList = self.dataIn.channelList
                     self.dataOut.heightList = self.dataIn.heightList
                     self.dataOut.dtype = numpy.dtype([('real', '<f4'), ('imag', '<f4')])
                     self.dataOut.nProfiles = self.dataOut.nFFTPoints
                     self.dataOut.flagDiscontinuousBlock = self.dataIn.flagDiscontinuousBlock
                     self.dataOut.utctime = self.firstdatatime
                     self.dataOut.flagDecodeData = self.dataIn.flagDecodeData
                     self.dataOut.flagDeflipData = self.dataIn.flagDeflipData
                     self.dataOut.flagShiftFFT = False
                     self.dataOut.nCohInt = self.dataIn.nCohInt
                     self.dataOut.nIncohInt = 1
                     self.dataOut.windowOfFilter = self.dataIn.windowOfFilter
                     self.dataOut.frequency = self.dataIn.frequency
                     self.dataOut.realtime = self.dataIn.realtime
                     self.dataOut.azimuth = self.dataIn.azimuth
                     self.dataOut.zenith = self.dataIn.zenith
                     self.dataOut.codeList = self.dataIn.codeList
                     self.dataOut.azimuthList = self.dataIn.azimuthList
                     self.dataOut.elevationList = self.dataIn.elevationList
                 def __getFft(self):
                     """
                     Convierte valores de Voltaje a Spectra
                     Affected:
                         self.dataOut.data_spc
                         self.dataOut.data_cspc
                         self.dataOut.data_dc
                         self.dataOut.heightList
                         self.profIndex
                         self.buffer
                         self.dataOut.flagNoData
                     """
                     fft_volt = numpy.fft.fft(
                         self.buffer, n=self.dataOut.nFFTPoints, axis=1)
                     fft_volt = fft_volt.astype(numpy.dtype('complex'))
                     dc = fft_volt[:, 0, :]
                     # calculo de self-spectra
                     fft_volt = numpy.fft.fftshift(fft_volt, axes=(1,))
                     spc = fft_volt * numpy.conjugate(fft_volt)
                     spc = spc.real
                     blocksize = 0
                     blocksize += dc.size
                     blocksize += spc.size
                     cspc = None
                     pairIndex = 0
                     if self.dataOut.pairsList != None:
                         # calculo de cross-spectra
                         cspc = numpy.zeros(
                             (self.dataOut.nPairs, self.dataOut.nFFTPoints, self.dataOut.nHeights), dtype='complex')
                         for pair in self.dataOut.pairsList:
                             if pair[0] not in self.dataOut.channelList:
                                 raise ValueError("Error getting CrossSpectra: pair 0 of %s is not in channelList = %s" % (
                                     str(pair), str(self.dataOut.channelList)))
                             if pair[1] not in self.dataOut.channelList:
                                 raise ValueError("Error getting CrossSpectra: pair 1 of %s is not in channelList = %s" % (
                                     str(pair), str(self.dataOut.channelList)))
                             cspc[pairIndex, :, :] = fft_volt[pair[0], :, :] * \
                                 numpy.conjugate(fft_volt[pair[1], :, :])
                             pairIndex += 1
                         blocksize += cspc.size
                     self.dataOut.data_spc = spc
                     self.dataOut.data_cspc = cspc
                     self.dataOut.data_dc = dc
                     self.dataOut.blockSize = blocksize
                     self.dataOut.flagShiftFFT = False
                 def run(self, nProfiles=None, nFFTPoints=None, pairsList=None, ippFactor=None, shift_fft=False):
                     if self.dataIn.type == "Spectra":
                         try:
                             self.dataOut.copy(self.dataIn)
                         except Exception as e:
                             print(e)
                         if shift_fft:
                             #desplaza a la derecha en el eje 2 determinadas posiciones
                             shift = int(self.dataOut.nFFTPoints/2)
                             self.dataOut.data_spc = numpy.roll(self.dataOut.data_spc, shift , axis=1)
                             if self.dataOut.data_cspc is not None:
                                 #desplaza a la derecha en el eje 2 determinadas posiciones
                                 self.dataOut.data_cspc = numpy.roll(self.dataOut.data_cspc, shift, axis=1)
                         if pairsList:
                             self.__selectPairs(pairsList)
                     elif self.dataIn.type == "Voltage":
                         self.dataOut.flagNoData = True
                         if nFFTPoints == None:
                             raise ValueError("This SpectraProc.run() need nFFTPoints input variable")
                         if nProfiles == None:
                             nProfiles = nFFTPoints
                         if ippFactor == None:
                             self.dataOut.ippFactor = 1
                         self.dataOut.nFFTPoints = nFFTPoints
                         if self.buffer is None:
                             self.buffer = numpy.zeros((self.dataIn.nChannels,
                                                        nProfiles,
                                                        self.dataIn.nHeights),
                                                       dtype='complex')
                         if self.dataIn.flagDataAsBlock:
                             nVoltProfiles = self.dataIn.data.shape[1]
                             if nVoltProfiles == nProfiles:
                                 self.buffer = self.dataIn.data.copy()
                                 self.profIndex = nVoltProfiles
                             elif nVoltProfiles < nProfiles:
                                 if self.profIndex == 0:
                                     self.id_min = 0
                                     self.id_max = nVoltProfiles
                                 self.buffer[:, self.id_min:self.id_max,
                                             :] = self.dataIn.data
                                 self.profIndex += nVoltProfiles
                                 self.id_min += nVoltProfiles
                                 self.id_max += nVoltProfiles
                             else:
                                 raise ValueError("The type object %s has %d profiles, it should just has %d profiles" % (
                                     self.dataIn.type, self.dataIn.data.shape[1], nProfiles))
                                 self.dataOut.flagNoData = True
                         else:
                             self.buffer[:, self.profIndex, :] = self.dataIn.data.copy()
                             self.profIndex += 1
                         if self.firstdatatime == None:
                             self.firstdatatime = self.dataIn.utctime
                         if self.profIndex == nProfiles:
                             self.__updateSpecFromVoltage()
                             if pairsList == None:
                                 self.dataOut.pairsList = [pair for pair in itertools.combinations(self.dataOut.channelList, 2)]
                             else:
                                 self.dataOut.pairsList = pairsList
                             self.__getFft()
                             self.dataOut.flagNoData = False
                             self.firstdatatime = None
                             self.profIndex = 0
+                        self.dataOut.noise_estimation = None
                     else:
                         raise ValueError("The type of input object '%s' is not valid".format(
                             self.dataIn.type))
                 def __selectPairs(self, pairsList):
                     if not pairsList:
                         return
                     pairs = []
                     pairsIndex = []
                     for pair in pairsList:
                         if pair[0] not in self.dataOut.channelList or pair[1] not in self.dataOut.channelList:
                             continue
                         pairs.append(pair)
                         pairsIndex.append(pairs.index(pair))
                     self.dataOut.data_cspc = self.dataOut.data_cspc[pairsIndex]
                     self.dataOut.pairsList = pairs
                     return
                 def selectFFTs(self, minFFT, maxFFT ):
                     """
                     Selecciona un bloque de datos en base a un grupo de valores de puntos FFTs segun el rango
                     minFFT<= FFT <= maxFFT
                     """
                     if (minFFT > maxFFT):
                         raise ValueError("Error selecting heights: Height range (%d,%d) is not valid" % (minFFT, maxFFT))
                     if (minFFT < self.dataOut.getFreqRange()[0]):
                         minFFT = self.dataOut.getFreqRange()[0]
                     if (maxFFT > self.dataOut.getFreqRange()[-1]):
                         maxFFT = self.dataOut.getFreqRange()[-1]
                     minIndex = 0
                     maxIndex = 0
                     FFTs = self.dataOut.getFreqRange()
                     inda = numpy.where(FFTs >= minFFT)
                     indb = numpy.where(FFTs <= maxFFT)
                     try:
                         minIndex = inda[0][0]
                     except:
                         minIndex = 0
                     try:
                         maxIndex = indb[0][-1]
                     except:
                         maxIndex = len(FFTs)
                     self.selectFFTsByIndex(minIndex, maxIndex)
                     return 1
                 def getBeaconSignal(self, tauindex=0, channelindex=0, hei_ref=None):
                     newheis = numpy.where(
                         self.dataOut.heightList > self.dataOut.radarControllerHeaderObj.Taus[tauindex])
                     if hei_ref != None:
                         newheis = numpy.where(self.dataOut.heightList > hei_ref)
                     minIndex = min(newheis[0])
                     maxIndex = max(newheis[0])
                     data_spc = self.dataOut.data_spc[:, :, minIndex:maxIndex + 1]
                     heightList = self.dataOut.heightList[minIndex:maxIndex + 1]
                     # determina indices
                     nheis = int(self.dataOut.radarControllerHeaderObj.txB /
                                 (self.dataOut.heightList[1] - self.dataOut.heightList[0]))
                     avg_dB = 10 * \
                         numpy.log10(numpy.sum(data_spc[channelindex, :, :], axis=0))
                     beacon_dB = numpy.sort(avg_dB)[-nheis:]
                     beacon_heiIndexList = []
                     for val in avg_dB.tolist():
                         if val >= beacon_dB[0]:
                             beacon_heiIndexList.append(avg_dB.tolist().index(val))
                     #data_spc = data_spc[:,:,beacon_heiIndexList]
                     data_cspc = None
                     if self.dataOut.data_cspc is not None:
                         data_cspc = self.dataOut.data_cspc[:, :, minIndex:maxIndex + 1]
                         #data_cspc = data_cspc[:,:,beacon_heiIndexList]
                     data_dc = None
                     if self.dataOut.data_dc is not None:
                         data_dc = self.dataOut.data_dc[:, minIndex:maxIndex + 1]
                         #data_dc = data_dc[:,beacon_heiIndexList]
                     self.dataOut.data_spc = data_spc
                     self.dataOut.data_cspc = data_cspc
                     self.dataOut.data_dc = data_dc
                     self.dataOut.heightList = heightList
                     self.dataOut.beacon_heiIndexList = beacon_heiIndexList
                     return 1
                 def selectFFTsByIndex(self, minIndex, maxIndex):
                     """
                     """
                     if (minIndex < 0) or (minIndex > maxIndex):
                         raise ValueError("Error selecting heights: Index range (%d,%d) is not valid" % (minIndex, maxIndex))
                     if (maxIndex >= self.dataOut.nProfiles):
                         maxIndex = self.dataOut.nProfiles-1
                     #Spectra
                     data_spc = self.dataOut.data_spc[:,minIndex:maxIndex+1,:]
                     data_cspc = None
                     if self.dataOut.data_cspc is not None:
                         data_cspc = self.dataOut.data_cspc[:,minIndex:maxIndex+1,:]
                     data_dc = None
                     if self.dataOut.data_dc is not None:
                         data_dc = self.dataOut.data_dc[minIndex:maxIndex+1,:]
                     self.dataOut.data_spc = data_spc
                     self.dataOut.data_cspc = data_cspc
                     self.dataOut.data_dc = data_dc
                     self.dataOut.ippSeconds = self.dataOut.ippSeconds*(self.dataOut.nFFTPoints / numpy.shape(data_cspc)[1])
                     self.dataOut.nFFTPoints = numpy.shape(data_cspc)[1]
                     self.dataOut.profilesPerBlock = numpy.shape(data_cspc)[1]
                     return 1
                 def getNoise(self, minHei=None, maxHei=None, minVel=None, maxVel=None):
                     # validacion de rango
                     if minHei == None:
                         minHei = self.dataOut.heightList[0]
                     if maxHei == None:
                         maxHei = self.dataOut.heightList[-1]
                     if (minHei < self.dataOut.heightList[0]) or (minHei > maxHei):
                         print('minHei: %.2f is out of the heights range' % (minHei))
                         print('minHei is setting to %.2f' % (self.dataOut.heightList[0]))
                         minHei = self.dataOut.heightList[0]
                     if (maxHei > self.dataOut.heightList[-1]) or (maxHei < minHei):
                         print('maxHei: %.2f is out of the heights range' % (maxHei))
                         print('maxHei is setting to %.2f' % (self.dataOut.heightList[-1]))
                         maxHei = self.dataOut.heightList[-1]
                     # validacion de velocidades
                     velrange = self.dataOut.getVelRange(1)
                     if minVel == None:
                         minVel = velrange[0]
                     if maxVel == None:
                         maxVel = velrange[-1]
                     if (minVel < velrange[0]) or (minVel > maxVel):
                         print('minVel: %.2f is out of the velocity range' % (minVel))
                         print('minVel is setting to %.2f' % (velrange[0]))
                         minVel = velrange[0]
                     if (maxVel > velrange[-1]) or (maxVel < minVel):
                         print('maxVel: %.2f is out of the velocity range' % (maxVel))
                         print('maxVel is setting to %.2f' % (velrange[-1]))
                         maxVel = velrange[-1]
                     # seleccion de indices para rango
                     minIndex = 0
                     maxIndex = 0
                     heights = self.dataOut.heightList
                     inda = numpy.where(heights >= minHei)
                     indb = numpy.where(heights <= maxHei)
                     try:
                         minIndex = inda[0][0]
                     except:
                         minIndex = 0
                     try:
                         maxIndex = indb[0][-1]
                     except:
                         maxIndex = len(heights)
                     if (minIndex < 0) or (minIndex > maxIndex):
                         raise ValueError("some value in (%d,%d) is not valid" % (
                             minIndex, maxIndex))
                     if (maxIndex >= self.dataOut.nHeights):
                         maxIndex = self.dataOut.nHeights - 1
                     # seleccion de indices para velocidades
                     indminvel = numpy.where(velrange >= minVel)
                     indmaxvel = numpy.where(velrange <= maxVel)
                     try:
                         minIndexVel = indminvel[0][0]
                     except:
                         minIndexVel = 0
                     try:
                         maxIndexVel = indmaxvel[0][-1]
                     except:
                         maxIndexVel = len(velrange)
                     # seleccion del espectro
                     data_spc = self.dataOut.data_spc[:,
                                                      minIndexVel:maxIndexVel + 1, minIndex:maxIndex + 1]
                     # estimacion de ruido
                     noise = numpy.zeros(self.dataOut.nChannels)
                     for channel in range(self.dataOut.nChannels):
                         daux = data_spc[channel, :, :]
                         sortdata = numpy.sort(daux, axis=None)
                         noise[channel] = hildebrand_sekhon(sortdata, self.dataOut.nIncohInt)
                     self.dataOut.noise_estimation = noise.copy()
                     return 1
             class removeDC(Operation):
                 def run(self, dataOut, mode=2):
                     self.dataOut = dataOut
                     jspectra = self.dataOut.data_spc
                     jcspectra = self.dataOut.data_cspc
                     num_chan = jspectra.shape[0]
                     num_hei = jspectra.shape[2]
                     if jcspectra is not None:
                         jcspectraExist = True
                         num_pairs = jcspectra.shape[0]
                     else:
                         jcspectraExist = False
                     freq_dc = int(jspectra.shape[1] / 2)
                     ind_vel = numpy.array([-2, -1, 1, 2]) + freq_dc
                     ind_vel = ind_vel.astype(int)
                     if ind_vel[0] < 0:
                         ind_vel[list(range(0, 1))] = ind_vel[list(range(0, 1))] + self.num_prof
                     if mode == 1:
                         jspectra[:, freq_dc, :] = (
                             jspectra[:, ind_vel[1], :] + jspectra[:, ind_vel[2], :]) / 2  # CORRECCION
                         if jcspectraExist:
                             jcspectra[:, freq_dc, :] = (
                                 jcspectra[:, ind_vel[1], :] + jcspectra[:, ind_vel[2], :]) / 2
                     if mode == 2:
                         vel = numpy.array([-2, -1, 1, 2])
                         xx = numpy.zeros([4, 4])
                         for fil in range(4):
                             xx[fil, :] = vel[fil]**numpy.asarray(list(range(4)))
                         xx_inv = numpy.linalg.inv(xx)
                         xx_aux = xx_inv[0, :]
                         for ich in range(num_chan):
                             yy = jspectra[ich, ind_vel, :]
                             jspectra[ich, freq_dc, :] = numpy.dot(xx_aux, yy)
                             junkid = jspectra[ich, freq_dc, :] <= 0
                             cjunkid = sum(junkid)
                             if cjunkid.any():
                                 jspectra[ich, freq_dc, junkid.nonzero()] = (
                                     jspectra[ich, ind_vel[1], junkid] + jspectra[ich, ind_vel[2], junkid]) / 2
                         if jcspectraExist:
                             for ip in range(num_pairs):
                                 yy = jcspectra[ip, ind_vel, :]
                                 jcspectra[ip, freq_dc, :] = numpy.dot(xx_aux, yy)
                     self.dataOut.data_spc = jspectra
                     self.dataOut.data_cspc = jcspectra
                     return self.dataOut
+            class getNoise(Operation):
+                def __init__(self):
+                    Operation.__init__(self)
+                def run(self, dataOut, minHei=None, maxHei=None, minVel=None, maxVel=None, minFreq= None, maxFreq=None,):
+                    self.dataOut = dataOut.copy()
+                    print("1: ",dataOut.noise_estimation,  dataOut.normFactor)
+                    if minHei == None:
+                        minHei = self.dataOut.heightList[0]
+                    if maxHei == None:
+                        maxHei = self.dataOut.heightList[-1]
+                    if (minHei < self.dataOut.heightList[0]) or (minHei > maxHei):
+                        print('minHei: %.2f is out of the heights range' % (minHei))
+                        print('minHei is setting to %.2f' % (self.dataOut.heightList[0]))
+                        minHei = self.dataOut.heightList[0]
+                    if (maxHei > self.dataOut.heightList[-1]) or (maxHei < minHei):
+                        print('maxHei: %.2f is out of the heights range' % (maxHei))
+                        print('maxHei is setting to %.2f' % (self.dataOut.heightList[-1]))
+                        maxHei = self.dataOut.heightList[-1]
+                    #indices relativos a los puntos de fft, puede ser de acuerdo a velocidad o frecuencia
+                    minIndexFFT = 0
+                    maxIndexFFT = 0
+                    # validacion de velocidades
+                    indminPoint = None
+                    indmaxPoint = None
+                    if minVel == None and maxVel == None:
+                        freqrange = self.dataOut.getFreqRange(1)
+                        if minFreq == None:
+                            minFreq = freqrange[0]
+                        if maxFreq == None:
+                            maxFreq = freqrange[-1]
+                        if (minFreq < freqrange[0]) or (minFreq > maxFreq):
+                            print('minFreq: %.2f is out of the frequency range' % (minFreq))
+                            print('minFreq is setting to %.2f' % (freqrange[0]))
+                            minFreq = freqrange[0]
+                        if (maxFreq > freqrange[-1]) or (maxFreq < minFreq):
+                            print('maxFreq: %.2f is out of the frequency range' % (maxFreq))
+                            print('maxFreq is setting to %.2f' % (freqrange[-1]))
+                            maxFreq = freqrange[-1]
+                        indminPoint = numpy.where(freqrange >= minFreq)
+                        indmaxPoint = numpy.where(freqrange <= maxFreq)
+                    else:
+                        velrange = self.dataOut.getVelRange(1)
+                        if minVel == None:
+                            minVel = velrange[0]
+                        if maxVel == None:
+                            maxVel = velrange[-1]
+                        if (minVel < velrange[0]) or (minVel > maxVel):
+                            print('minVel: %.2f is out of the velocity range' % (minVel))
+                            print('minVel is setting to %.2f' % (velrange[0]))
+                            minVel = velrange[0]
+                        if (maxVel > velrange[-1]) or (maxVel < minVel):
+                            print('maxVel: %.2f is out of the velocity range' % (maxVel))
+                            print('maxVel is setting to %.2f' % (velrange[-1]))
+                            maxVel = velrange[-1]
+                        indminPoint = numpy.where(velrange >= minVel)
+                        indmaxPoint = numpy.where(velrange <= maxVel)
+                    # seleccion de indices para rango
+                    minIndex = 0
+                    maxIndex = 0
+                    heights = self.dataOut.heightList
+                    inda = numpy.where(heights >= minHei)
+                    indb = numpy.where(heights <= maxHei)
+                    try:
+                        minIndex = inda[0][0]
+                    except:
+                        minIndex = 0
+                    try:
+                        maxIndex = indb[0][-1]
+                    except:
+                        maxIndex = len(heights)
+                    if (minIndex < 0) or (minIndex > maxIndex):
+                        raise ValueError("some value in (%d,%d) is not valid" % (
+                            minIndex, maxIndex))
+                    if (maxIndex >= self.dataOut.nHeights):
+                        maxIndex = self.dataOut.nHeights - 1
+                    #############################################################3
+                    # seleccion de indices para velocidades
+                    try:
+                        minIndexFFT = indminPoint[0][0]
+                    except:
+                        minIndexFFT = 0
+                    try:
+                        maxIndexFFT = indmaxPoint[0][-1]
+                    except:
+                        maxIndexFFT = len( self.dataOut.getFreqRange(1))
+                    #print(minIndex, maxIndex,minIndexVel, maxIndexVel)
+                    noise = self.dataOut.getNoise(xmin_index=minIndexFFT, xmax_index=maxIndexFFT, ymin_index=minIndex, ymax_index=maxIndex)
+                    self.dataOut.noise_estimation = noise.copy()
+                    #print("2: ",10*numpy.log10(self.dataOut.noise_estimation/64))
+                    return self.dataOut
             # import matplotlib.pyplot as plt
             def fit_func( x, a0, a1, a2): #, a3, a4, a5):
                 z = (x - a1) / a2
                 y = a0 * numpy.exp(-z**2 / a2)  #+ a3 + a4 * x + a5 * x**2
                 return y
             class CleanRayleigh(Operation):
                 def __init__(self):
                     Operation.__init__(self)
                     self.i=0
                     self.isConfig = False
                     self.__dataReady = False
                     self.__profIndex = 0
                     self.byTime = False
                     self.byProfiles = False
                     self.bloques =  None
                     self.bloque0 = None
                     self.index = 0
                     self.buffer = 0
                     self.buffer2 = 0
                     self.buffer3 = 0
                 def setup(self,dataOut,min_hei,max_hei,n, timeInterval,factor_stdv):
                     self.nChannels = dataOut.nChannels
                     self.nProf = dataOut.nProfiles
                     self.nPairs = dataOut.data_cspc.shape[0]
                     self.pairsArray = numpy.array(dataOut.pairsList)
                     self.spectra = dataOut.data_spc
                     self.cspectra = dataOut.data_cspc
                     self.heights = dataOut.heightList #alturas totales
                     self.nHeights =  len(self.heights)
                     self.min_hei = min_hei
                     self.max_hei = max_hei
                     if (self.min_hei == None):
                         self.min_hei = 0
                     if (self.max_hei == None):
                         self.max_hei = dataOut.heightList[-1]
                     self.hval = ((self.max_hei>=self.heights) & (self.heights >= self.min_hei)).nonzero()
                     self.heightsClean = self.heights[self.hval] #alturas filtradas
                     self.hval = self.hval[0] # forma (N,), an solo N elementos -> Indices de alturas
                     self.nHeightsClean = len(self.heightsClean)
                     self.channels = dataOut.channelList
                     self.nChan = len(self.channels)
                     self.nIncohInt = dataOut.nIncohInt
                     self.__initime = dataOut.utctime
                     self.maxAltInd = self.hval[-1]+1
                     self.minAltInd = self.hval[0]
                     self.crosspairs = dataOut.pairsList
                     self.nPairs = len(self.crosspairs)
                     self.normFactor = dataOut.normFactor
                     self.nFFTPoints = dataOut.nFFTPoints
                     self.ippSeconds = dataOut.ippSeconds
                     self.currentTime = self.__initime
                     self.pairsArray = numpy.array(dataOut.pairsList)
                     self.factor_stdv = factor_stdv
                     if n != None :
                         self.byProfiles = True
                         self.nIntProfiles = n
                     else:
                         self.__integrationtime = timeInterval
                     self.__dataReady = False
                     self.isConfig = True
                 def run(self, dataOut,min_hei=None,max_hei=None, n=None, timeInterval=10,factor_stdv=2.5):
                     if not self.isConfig :
                         self.setup(dataOut, min_hei,max_hei,n,timeInterval,factor_stdv)
                     tini=dataOut.utctime
                     if self.byProfiles:
                         if self.__profIndex ==  self.nIntProfiles:
                             self.__dataReady = True
                     else:
                         if (tini - self.__initime) >= self.__integrationtime:
                             self.__dataReady = True
                             self.__initime = tini
                     #if (tini.tm_min % 2) == 0 and (tini.tm_sec < 5 and self.fint==0):
                     if self.__dataReady:
                         self.__profIndex = 0
                         jspc = self.buffer
                         jcspc = self.buffer2
                         #jnoise = self.buffer3
                         self.buffer = dataOut.data_spc
                         self.buffer2 = dataOut.data_cspc
                         #self.buffer3 = dataOut.noise
                         self.currentTime = dataOut.utctime
                         if numpy.any(jspc) :
                             #print( jspc.shape, jcspc.shape)
                             jspc = numpy.reshape(jspc,(int(len(jspc)/self.nChannels),self.nChannels,self.nFFTPoints,self.nHeights))
                             jcspc= numpy.reshape(jcspc,(int(len(jcspc)/self.nPairs),self.nPairs,self.nFFTPoints,self.nHeights))
                             self.__dataReady = False
                             #print( jspc.shape, jcspc.shape)
                             dataOut.flagNoData = False
                         else:
                             dataOut.flagNoData = True
                             self.__dataReady = False
                             return dataOut
                     else:
                         #print( len(self.buffer))
                         if numpy.any(self.buffer):
                             self.buffer = numpy.concatenate((self.buffer,dataOut.data_spc), axis=0)
                             self.buffer2 = numpy.concatenate((self.buffer2,dataOut.data_cspc), axis=0)
                             self.buffer3 += dataOut.data_dc
                         else:
                             self.buffer = dataOut.data_spc
                             self.buffer2 = dataOut.data_cspc
                             self.buffer3 = dataOut.data_dc
                         #print self.index, self.fint
                         #print self.buffer2.shape
                         dataOut.flagNoData = True                   ## NOTE: ?? revisar LUEGO
                         self.__profIndex += 1
                         return dataOut                             ## NOTE: REV
                     #index = tini.tm_hour*12+tini.tm_min/5
                     '''REVISAR'''
                     # jspc = jspc/self.nFFTPoints/self.normFactor
                     # jcspc = jcspc/self.nFFTPoints/self.normFactor
                     tmp_spectra,tmp_cspectra = self.cleanRayleigh(dataOut,jspc,jcspc,self.factor_stdv)
                     dataOut.data_spc = tmp_spectra
                     dataOut.data_cspc = tmp_cspectra
                     #dataOut.data_spc,dataOut.data_cspc = self.cleanRayleigh(dataOut,jspc,jcspc,self.factor_stdv)
                     dataOut.data_dc = self.buffer3
                     dataOut.nIncohInt *= self.nIntProfiles
                     dataOut.utctime = self.currentTime             #tiempo promediado
                     #print("Time: ",time.localtime(dataOut.utctime))
                     # dataOut.data_spc = sat_spectra
                     # dataOut.data_cspc = sat_cspectra
                     self.buffer = 0
                     self.buffer2 = 0
                     self.buffer3 = 0
                     return dataOut
                 def cleanRayleigh(self,dataOut,spectra,cspectra,factor_stdv):
                     #print("OP cleanRayleigh")
                     #import matplotlib.pyplot as plt
                     #for k in range(149):
                     #channelsProcssd = []
                     #channelA_ok = False
                     #rfunc = cspectra.copy() #self.bloques
                     rfunc = spectra.copy()
                     #rfunc = cspectra
                     #val_spc = spectra*0.0 #self.bloque0*0.0
                     #val_cspc = cspectra*0.0 #self.bloques*0.0
                     #in_sat_spectra = spectra.copy()  #self.bloque0
                     #in_sat_cspectra = cspectra.copy()  #self.bloques
                     ###ONLY FOR TEST:
                     raxs = math.ceil(math.sqrt(self.nPairs))
                     caxs = math.ceil(self.nPairs/raxs)
                     if self.nPairs <4:
                         raxs = 2
                         caxs = 2
                     #print(raxs, caxs)
                     fft_rev = 14 #nFFT to plot
                     hei_rev = ((self.heights >= 550) & (self.heights <= 551)).nonzero() #hei to plot
                     hei_rev = hei_rev[0]
                     #print(hei_rev)
                     #print numpy.absolute(rfunc[:,0,0,14])
                     gauss_fit, covariance = None, None
                     for ih in range(self.minAltInd,self.maxAltInd):
                         for ifreq in range(self.nFFTPoints):
                             '''
                             ###ONLY FOR TEST:
                             if ifreq ==fft_rev and ih==hei_rev: #TO VIEW A SIGNLE FREQUENCY
                                 fig, axs = plt.subplots(raxs, caxs)
                                 fig2, axs2 = plt.subplots(raxs, caxs)
                             col_ax = 0
                             row_ax = 0
                             '''
                             #print(self.nPairs)
                             for ii in range(self.nChan):  #PARES DE CANALES SELF y CROSS
                                 # if self.crosspairs[ii][1]-self.crosspairs[ii][0] > 1: # APLICAR SOLO EN PARES CONTIGUOS
                                 #     continue
                                 # if not self.crosspairs[ii][0] in channelsProcssd:
                                 #     channelA_ok = True
                                 #print("pair: ",self.crosspairs[ii])
                                 '''
                                 ###ONLY FOR TEST:
                                 if (col_ax%caxs==0 and col_ax!=0 and self.nPairs !=1):
                                     col_ax = 0
                                     row_ax += 1
                                 '''
                                 func2clean = 10*numpy.log10(numpy.absolute(rfunc[:,ii,ifreq,ih]))           #Potencia?
                                 #print(func2clean.shape)
                                 val = (numpy.isfinite(func2clean)==True).nonzero()
                                 if len(val)>0:                                                              #limitador
                                     min_val = numpy.around(numpy.amin(func2clean)-2) #> (-40)
                                     if min_val <= -40 :
                                         min_val = -40
                                     max_val = numpy.around(numpy.amax(func2clean)+2) #< 200
                                     if max_val >= 200 :
                                         max_val = 200
                                     #print min_val, max_val
                                     step = 1
                                     #print("Getting bins and the histogram")
                                     x_dist = min_val + numpy.arange(1 + ((max_val-(min_val))/step))*step
                                     y_dist,binstep = numpy.histogram(func2clean,bins=range(int(min_val),int(max_val+2),step))
                                     #print(len(y_dist),len(binstep[:-1]))
                                     #print(row_ax,col_ax, " ..")
                                     #print(self.pairsArray[ii][0],self.pairsArray[ii][1])
                                     mean = numpy.sum(x_dist * y_dist) / numpy.sum(y_dist)
                                     sigma = numpy.sqrt(numpy.sum(y_dist * (x_dist - mean)**2) / numpy.sum(y_dist))
                                     parg = [numpy.amax(y_dist),mean,sigma]
                                     newY = None
                                     try :
                                         gauss_fit, covariance = curve_fit(fit_func, x_dist, y_dist,p0=parg)
                                         mode = gauss_fit[1]
                                         stdv = gauss_fit[2]
                                         #print(" FIT OK",gauss_fit)
                                         '''
                                         ###ONLY FOR TEST:
                                         if ifreq ==fft_rev and ih==hei_rev: #TO VIEW A SIGNLE FREQUENCY
                                             newY = fit_func(x_dist,gauss_fit[0],gauss_fit[1],gauss_fit[2])
                                             axs[row_ax,col_ax].plot(binstep[:-1],y_dist,color='green')
                                             axs[row_ax,col_ax].plot(binstep[:-1],newY,color='red')
                                             axs[row_ax,col_ax].set_title("CH "+str(self.channels[ii]))
                                         '''
                                     except:
                                         mode = mean
                                         stdv = sigma
                                         #print("FIT FAIL")
                                         #continue
                                     #print(mode,stdv)
                                     #Removing echoes greater than mode + std_factor*stdv
                                     noval = (abs(func2clean - mode)>=(factor_stdv*stdv)).nonzero()
                                     #noval tiene los indices que se van a remover
                                     #print("Chan ",ii," novals: ",len(noval[0]))
                                     if len(noval[0]) > 0: #forma de array (N,) es igual a longitud (N)
                                         novall = ((func2clean - mode) >= (factor_stdv*stdv)).nonzero()
                                         #print(novall)
                                         #print("   ",self.pairsArray[ii])
                                         #cross_pairs = self.pairsArray[ii]
                                             #Getting coherent echoes which are removed.
                                         # if len(novall[0]) > 0:
                                         #
                                         #     val_spc[novall[0],cross_pairs[0],ifreq,ih] = 1
                                         #     val_spc[novall[0],cross_pairs[1],ifreq,ih] = 1
                                         #     val_cspc[novall[0],ii,ifreq,ih] = 1
                                             #print("OUT NOVALL 1")
                                         try:
                                             pair = (self.channels[ii],self.channels[ii + 1])
                                         except:
                                             pair = (99,99)
                                         #print("par ", pair)
                                         if ( pair in self.crosspairs):
                                             q = self.crosspairs.index(pair)
                                             #print("está aqui: ", q, (ii,ii + 1))
                                             new_a = numpy.delete(cspectra[:,q,ifreq,ih], noval[0])
                                             cspectra[noval,q,ifreq,ih] = numpy.mean(new_a) #mean CrossSpectra
                                         #if channelA_ok:
                                         #chA = self.channels.index(cross_pairs[0])
                                         new_b = numpy.delete(spectra[:,ii,ifreq,ih], noval[0])
                                         spectra[noval,ii,ifreq,ih] = numpy.mean(new_b) #mean Spectra Pair A
                                         #channelA_ok = False
                                         # chB = self.channels.index(cross_pairs[1])
                                         # new_c = numpy.delete(spectra[:,chB,ifreq,ih], noval[0])
                                         # spectra[noval,chB,ifreq,ih] = numpy.mean(new_c) #mean Spectra Pair B
                                         #
                                         # channelsProcssd.append(self.crosspairs[ii][0]) # save channel A
                                         # channelsProcssd.append(self.crosspairs[ii][1]) # save channel B
                                     '''
                                     ###ONLY FOR TEST:
                                     if ifreq ==fft_rev and ih==hei_rev: #TO VIEW A SIGNLE FREQUENCY
                                         func2clean = 10*numpy.log10(numpy.absolute(spectra[:,ii,ifreq,ih]))
                                         y_dist,binstep = numpy.histogram(func2clean,bins=range(int(min_val),int(max_val+2),step))
                                         axs2[row_ax,col_ax].plot(binstep[:-1],newY,color='red')
                                         axs2[row_ax,col_ax].plot(binstep[:-1],y_dist,color='green')
                                         axs2[row_ax,col_ax].set_title("CH "+str(self.channels[ii]))
                                     '''
                         '''
                             ###ONLY FOR TEST:
                                 col_ax += 1    #contador de ploteo columnas
                                 ##print(col_ax)
                             ###ONLY FOR TEST:
                             if ifreq ==fft_rev and ih==hei_rev: #TO VIEW A SIGNLE FREQUENCY
                                 title = str(dataOut.datatime)+" nFFT: "+str(ifreq)+"   Alt: "+str(self.heights[ih])+ " km"
                                 title2 = str(dataOut.datatime)+" nFFT: "+str(ifreq)+"   Alt: "+str(self.heights[ih])+ " km  CLEANED"
                                 fig.suptitle(title)
                                 fig2.suptitle(title2)
                                 plt.show()
                         '''
                         ##################################################################################################
                     #print("Getting average of the spectra and cross-spectra from incoherent echoes.")
                     out_spectra = numpy.zeros([self.nChan,self.nFFTPoints,self.nHeights], dtype=float) #+numpy.nan
                     out_cspectra = numpy.zeros([self.nPairs,self.nFFTPoints,self.nHeights], dtype=complex) #+numpy.nan
                     for ih in range(self.nHeights):
                         for ifreq in range(self.nFFTPoints):
                             for ich in range(self.nChan):
                                 tmp = spectra[:,ich,ifreq,ih]
                                 valid = (numpy.isfinite(tmp[:])==True).nonzero()
                                 if len(valid[0]) >0 :
                                     out_spectra[ich,ifreq,ih] = numpy.nansum(tmp)#/len(valid[0])
                             for icr in range(self.nPairs):
                                 tmp = numpy.squeeze(cspectra[:,icr,ifreq,ih])
                                 valid = (numpy.isfinite(tmp)==True).nonzero()
                                 if len(valid[0]) > 0:
                                     out_cspectra[icr,ifreq,ih] = numpy.nansum(tmp)#/len(valid[0])
                     return out_spectra, out_cspectra
                 def REM_ISOLATED_POINTS(self,array,rth):
             #         import matplotlib.pyplot as plt
                     if rth == None :
                         rth = 4
                     #print("REM ISO")
                     num_prof = len(array[0,:,0])
                     num_hei = len(array[0,0,:])
                     n2d = len(array[:,0,0])
                     for ii in range(n2d) :
                         #print ii,n2d
                         tmp = array[ii,:,:]
                         #print tmp.shape, array[ii,101,:],array[ii,102,:]
                       # fig = plt.figure(figsize=(6,5))
                       # left, bottom, width, height = 0.1, 0.1, 0.8, 0.8
                       # ax = fig.add_axes([left, bottom, width, height])
                       # x = range(num_prof)
                       # y = range(num_hei)
                       # cp = ax.contour(y,x,tmp)
                       # ax.clabel(cp, inline=True,fontsize=10)
                       # plt.show()
                         #indxs = WHERE(FINITE(tmp) AND tmp GT 0,cindxs)
                         tmp = numpy.reshape(tmp,num_prof*num_hei)
                         indxs1 = (numpy.isfinite(tmp)==True).nonzero()
                         indxs2 = (tmp > 0).nonzero()
                         indxs1 = (indxs1[0])
                         indxs2 = indxs2[0]
                         #indxs1 = numpy.array(indxs1[0])
                         #indxs2 = numpy.array(indxs2[0])
                         indxs = None
                         #print indxs1 , indxs2
                         for iv in range(len(indxs2)):
                             indv = numpy.array((indxs1 == indxs2[iv]).nonzero())
                             #print len(indxs2), indv
                             if len(indv[0]) > 0  :
                                 indxs =  numpy.concatenate((indxs,indxs2[iv]), axis=None)
               #           print indxs
                         indxs = indxs[1:]
                         #print(indxs, len(indxs))
                         if len(indxs) < 4 :
                             array[ii,:,:] = 0.
                             return
                         xpos = numpy.mod(indxs ,num_hei)
                         ypos = (indxs / num_hei)
                         sx = numpy.argsort(xpos) # Ordering respect to "x" (time)
                         #print sx
                         xpos = xpos[sx]
                         ypos = ypos[sx]
                  # *********************************** Cleaning isolated points **********************************
                         ic = 0
                         while True :
                             r = numpy.sqrt(list(numpy.power((xpos[ic]-xpos),2)+ numpy.power((ypos[ic]-ypos),2)))
                             #no_coh = WHERE(FINITE(r) AND (r LE rth),cno_coh)
                             #plt.plot(r)
                             #plt.show()
                             no_coh1 = (numpy.isfinite(r)==True).nonzero()
                             no_coh2 = (r <= rth).nonzero()
                             #print r, no_coh1, no_coh2
                             no_coh1 = numpy.array(no_coh1[0])
                             no_coh2 = numpy.array(no_coh2[0])
                             no_coh = None
                             #print valid1 , valid2
                             for iv in range(len(no_coh2)):
                                 indv = numpy.array((no_coh1 == no_coh2[iv]).nonzero())
                                 if len(indv[0]) > 0  :
                                     no_coh =  numpy.concatenate((no_coh,no_coh2[iv]), axis=None)
                             no_coh = no_coh[1:]
                             #print len(no_coh), no_coh
                             if len(no_coh) < 4 :
                                 #print xpos[ic], ypos[ic], ic
                 #                plt.plot(r)
                 #                plt.show()
                                 xpos[ic] = numpy.nan
                                 ypos[ic] = numpy.nan
                             ic = ic + 1
                             if  (ic == len(indxs)) :
                                 break
                             #print( xpos, ypos)
                         indxs = (numpy.isfinite(list(xpos))==True).nonzero()
                         #print indxs[0]
                         if len(indxs[0]) < 4 :
                             array[ii,:,:] = 0.
                             return
                         xpos = xpos[indxs[0]]
                         ypos = ypos[indxs[0]]
                         for i in range(0,len(ypos)):
                             ypos[i]=int(ypos[i])
                         junk = tmp
                         tmp = junk*0.0
                         tmp[list(xpos + (ypos*num_hei))] = junk[list(xpos + (ypos*num_hei))]
                         array[ii,:,:] = numpy.reshape(tmp,(num_prof,num_hei))
                         #print array.shape
                         #tmp = numpy.reshape(tmp,(num_prof,num_hei))
                         #print tmp.shape
                         # fig = plt.figure(figsize=(6,5))
                         # left, bottom, width, height = 0.1, 0.1, 0.8, 0.8
                         # ax = fig.add_axes([left, bottom, width, height])
                         # x = range(num_prof)
                         # y = range(num_hei)
                         # cp = ax.contour(y,x,array[ii,:,:])
                         # ax.clabel(cp, inline=True,fontsize=10)
                         # plt.show()
                     return array
             class IntegrationFaradaySpectra(Operation):
                 __profIndex = 0
                 __withOverapping = False
                 __byTime = False
                 __initime = None
                 __lastdatatime = None
                 __integrationtime = None
                 __buffer_spc = None
                 __buffer_cspc = None
                 __buffer_dc = None
                 __dataReady = False
                 __timeInterval = None
                 n = None
                 def __init__(self):
                     Operation.__init__(self)
                 def setup(self, dataOut,n=None, timeInterval=None, overlapping=False, DPL=None):
                     """
                     Set the parameters of the integration class.
                     Inputs:
                         n        :    Number of coherent integrations
                         timeInterval   :    Time of integration. If the parameter "n" is selected this one does not work
                         overlapping    :
                     """
                     self.__initime = None
                     self.__lastdatatime = 0
                     self.__buffer_spc = []
                     self.__buffer_cspc = []
                     self.__buffer_dc = 0
                     self.__profIndex = 0
                     self.__dataReady = False
                     self.__byTime = False
                     #self.ByLags = dataOut.ByLags   ###REDEFINIR
                     self.ByLags = False
                     if DPL != None:
                         self.DPL=DPL
                     else:
                         #self.DPL=dataOut.DPL    ###REDEFINIR
                         self.DPL=0
                     if n is None and timeInterval is None:
                         raise ValueError("n or timeInterval should be specified ...")
                     if n is not None:
                         self.n = int(n)
                     else:
                         self.__integrationtime = int(timeInterval)
                         self.n = None
                         self.__byTime = True
                 def putData(self, data_spc, data_cspc, data_dc):
                     """
                     Add a profile to the __buffer_spc and increase in one the __profileIndex
                     """
                     self.__buffer_spc.append(data_spc)
                     if data_cspc is None:
                         self.__buffer_cspc = None
                     else:
                         self.__buffer_cspc.append(data_cspc)
                     if data_dc is None:
                         self.__buffer_dc = None
                     else:
                         self.__buffer_dc += data_dc
                     self.__profIndex += 1
                     return
                 def hildebrand_sekhon_Integration(self,data,navg):
                     sortdata = numpy.sort(data, axis=None)
                     sortID=data.argsort()
                     lenOfData = len(sortdata)
                     nums_min = lenOfData*0.75
                     if nums_min <= 5:
                         nums_min = 5
                     sump = 0.
                     sumq = 0.
                     j = 0
                     cont = 1
                     while((cont == 1)and(j < lenOfData)):
                         sump += sortdata[j]
                         sumq += sortdata[j]**2
                         if j > nums_min:
                             rtest = float(j)/(j-1) + 1.0/navg
                             if ((sumq*j) > (rtest*sump**2)):
                                 j = j - 1
                                 sump = sump - sortdata[j]
                                 sumq = sumq - sortdata[j]**2
                                 cont = 0
                         j += 1
                     #lnoise = sump / j
                     return j,sortID
                 def pushData(self):
                     """
                     Return the sum of the last profiles and the profiles used in the sum.
                     Affected:
                     self.__profileIndex
                     """
                     bufferH=None
                     buffer=None
                     buffer1=None
                     buffer_cspc=None
                     self.__buffer_spc=numpy.array(self.__buffer_spc)
                     self.__buffer_cspc=numpy.array(self.__buffer_cspc)
                     freq_dc = int(self.__buffer_spc.shape[2] / 2)
                     #print("FREQ_DC",freq_dc,self.__buffer_spc.shape,self.nHeights)
                     for k in range(7,self.nHeights):
                         buffer_cspc=numpy.copy(self.__buffer_cspc[:,:,:,k])
                         outliers_IDs_cspc=[]
                         cspc_outliers_exist=False
                         for i in range(self.nChannels):#dataOut.nChannels):
                             buffer1=numpy.copy(self.__buffer_spc[:,i,:,k])
                             indexes=[]
                             #sortIDs=[]
                             outliers_IDs=[]
                             for j in range(self.nProfiles):
                                 # if i==0 and j==freq_dc: #NOT CONSIDERING DC PROFILE AT CHANNEL 0
                                 #     continue
                                 # if i==1 and j==0: #NOT CONSIDERING DC PROFILE AT CHANNEL 1
                                 #     continue
                                 buffer=buffer1[:,j]
                                 index,sortID=self.hildebrand_sekhon_Integration(buffer,1)
                                 indexes.append(index)
                                 #sortIDs.append(sortID)
                                 outliers_IDs=numpy.append(outliers_IDs,sortID[index:])
                             outliers_IDs=numpy.array(outliers_IDs)
                             outliers_IDs=outliers_IDs.ravel()
                             outliers_IDs=numpy.unique(outliers_IDs)
                             outliers_IDs=outliers_IDs.astype(numpy.dtype('int64'))
                             indexes=numpy.array(indexes)
                             indexmin=numpy.min(indexes)
                             if indexmin != buffer1.shape[0]:
                                 cspc_outliers_exist=True
                                 ###sortdata=numpy.sort(buffer1,axis=0)
                                 ###avg2=numpy.mean(sortdata[:indexmin,:],axis=0)
                                 lt=outliers_IDs
                                 avg=numpy.mean(buffer1[[t for t in range(buffer1.shape[0]) if t not in lt],:],axis=0)
                                 for p in list(outliers_IDs):
                                     buffer1[p,:]=avg
                             self.__buffer_spc[:,i,:,k]=numpy.copy(buffer1)
                             ###cspc IDs
                             #indexmin_cspc+=indexmin_cspc
                             outliers_IDs_cspc=numpy.append(outliers_IDs_cspc,outliers_IDs)
                         #if not breakFlag:
                         outliers_IDs_cspc=outliers_IDs_cspc.astype(numpy.dtype('int64'))
                         if cspc_outliers_exist:
                             #sortdata=numpy.sort(buffer_cspc,axis=0)
                             #avg=numpy.mean(sortdata[:indexmin_cpsc,:],axis=0)
                             lt=outliers_IDs_cspc
                             avg=numpy.mean(buffer_cspc[[t for t in range(buffer_cspc.shape[0]) if t not in lt],:],axis=0)
                             for p in list(outliers_IDs_cspc):
                                 buffer_cspc[p,:]=avg
                         self.__buffer_cspc[:,:,:,k]=numpy.copy(buffer_cspc)
                         #else:
                             #break
                     buffer=None
                     bufferH=None
                     buffer1=None
                     buffer_cspc=None
                     #print("cpsc",self.__buffer_cspc[:,0,0,0,0])
                     #print(self.__profIndex)
                     #exit()
                     buffer=None
                     #print(self.__buffer_spc[:,1,3,20,0])
                     #print(self.__buffer_spc[:,1,5,37,0])
                     data_spc = numpy.sum(self.__buffer_spc,axis=0)
                     data_cspc = numpy.sum(self.__buffer_cspc,axis=0)
                     #print(numpy.shape(data_spc))
                     #data_spc[1,4,20,0]=numpy.nan
                     #data_cspc = self.__buffer_cspc
                     data_dc = self.__buffer_dc
                     n = self.__profIndex
                     self.__buffer_spc = []
                     self.__buffer_cspc = []
                     self.__buffer_dc = 0
                     self.__profIndex = 0
                     return data_spc, data_cspc, data_dc, n
                 def byProfiles(self, *args):
                     self.__dataReady = False
                     avgdata_spc = None
                     avgdata_cspc = None
                     avgdata_dc = None
                     self.putData(*args)
                     if self.__profIndex == self.n:
                         avgdata_spc, avgdata_cspc, avgdata_dc, n = self.pushData()
                         self.n = n
                         self.__dataReady = True
                     return avgdata_spc, avgdata_cspc, avgdata_dc
                 def byTime(self, datatime, *args):
                     self.__dataReady = False
                     avgdata_spc = None
                     avgdata_cspc = None
                     avgdata_dc = None
                     self.putData(*args)
                     if (datatime - self.__initime) >= self.__integrationtime:
                         avgdata_spc, avgdata_cspc, avgdata_dc, n = self.pushData()
                         self.n = n
                         self.__dataReady = True
                     return avgdata_spc, avgdata_cspc, avgdata_dc
                 def integrate(self, datatime, *args):
                     if self.__profIndex == 0:
                         self.__initime = datatime
                     if self.__byTime:
                         avgdata_spc, avgdata_cspc, avgdata_dc = self.byTime(
                             datatime, *args)
                     else:
                         avgdata_spc, avgdata_cspc, avgdata_dc = self.byProfiles(*args)
                     if not self.__dataReady:
                         return None, None, None, None
                     return self.__initime, avgdata_spc, avgdata_cspc, avgdata_dc
                 def run(self, dataOut, n=None, DPL = None,timeInterval=None, overlapping=False):
                     if n == 1:
                         return dataOut
                     dataOut.flagNoData = True
                     if not self.isConfig:
                         self.setup(dataOut, n, timeInterval, overlapping,DPL )
                         self.isConfig = True
                     if not self.ByLags:
                         self.nProfiles=dataOut.nProfiles
                         self.nChannels=dataOut.nChannels
                         self.nHeights=dataOut.nHeights
                         avgdatatime, avgdata_spc, avgdata_cspc, avgdata_dc = self.integrate(dataOut.utctime,
                                                                                             dataOut.data_spc,
                                                                                             dataOut.data_cspc,
                                                                                             dataOut.data_dc)
                     else:
                         self.nProfiles=dataOut.nProfiles
                         self.nChannels=dataOut.nChannels
                         self.nHeights=dataOut.nHeights
                         avgdatatime, avgdata_spc, avgdata_cspc, avgdata_dc = self.integrate(dataOut.utctime,
                                                                                             dataOut.dataLag_spc,
                                                                                             dataOut.dataLag_cspc,
                                                                                             dataOut.dataLag_dc)
                     if self.__dataReady:
                         if not self.ByLags:
                             dataOut.data_spc = numpy.squeeze(avgdata_spc)
                             dataOut.data_cspc = numpy.squeeze(avgdata_cspc)
                             dataOut.data_dc = avgdata_dc
                         else:
                             dataOut.dataLag_spc = avgdata_spc
                             dataOut.dataLag_cspc = avgdata_cspc
                             dataOut.dataLag_dc = avgdata_dc
                             dataOut.data_spc=dataOut.dataLag_spc[:,:,:,dataOut.LagPlot]
                             dataOut.data_cspc=dataOut.dataLag_cspc[:,:,:,dataOut.LagPlot]
                             dataOut.data_dc=dataOut.dataLag_dc[:,:,dataOut.LagPlot]
                         dataOut.nIncohInt *= self.n
                         dataOut.utctime = avgdatatime
                         dataOut.flagNoData = False
                     return dataOut
             class removeInterference(Operation):
                 def removeInterference2(self):
                     cspc = self.dataOut.data_cspc
                     spc = self.dataOut.data_spc
                     Heights = numpy.arange(cspc.shape[2])
                     realCspc = numpy.abs(cspc)
                     for i in range(cspc.shape[0]):
                         LinePower= numpy.sum(realCspc[i], axis=0)
                         Threshold = numpy.amax(LinePower)-numpy.sort(LinePower)[len(Heights)-int(len(Heights)*0.1)]
                         SelectedHeights = Heights[ numpy.where( LinePower < Threshold ) ]
                         InterferenceSum = numpy.sum( realCspc[i,:,SelectedHeights], axis=0 )
                         InterferenceThresholdMin = numpy.sort(InterferenceSum)[int(len(InterferenceSum)*0.98)]
                         InterferenceThresholdMax = numpy.sort(InterferenceSum)[int(len(InterferenceSum)*0.99)]
                         InterferenceRange = numpy.where( ([InterferenceSum > InterferenceThresholdMin]))# , InterferenceSum < InterferenceThresholdMax]) )
                         #InterferenceRange = numpy.where( ([InterferenceRange < InterferenceThresholdMax]))
                         if len(InterferenceRange)<int(cspc.shape[1]*0.3):
                             cspc[i,InterferenceRange,:] = numpy.NaN
                     self.dataOut.data_cspc = cspc
                 def removeInterference(self, interf = 2, hei_interf = None, nhei_interf = None, offhei_interf = None):
                     jspectra = self.dataOut.data_spc
                     jcspectra = self.dataOut.data_cspc
                     jnoise = self.dataOut.getNoise()
                     num_incoh = self.dataOut.nIncohInt
                     num_channel = jspectra.shape[0]
                     num_prof = jspectra.shape[1]
                     num_hei = jspectra.shape[2]
                     # hei_interf
                     if hei_interf is None:
                         count_hei = int(num_hei / 2)
                         hei_interf = numpy.asmatrix(list(range(count_hei))) + num_hei - count_hei
                         hei_interf = numpy.asarray(hei_interf)[0]
                     # nhei_interf
                     if (nhei_interf == None):
                         nhei_interf = 5
                     if (nhei_interf < 1):
                         nhei_interf = 1
                     if (nhei_interf > count_hei):
                         nhei_interf = count_hei
                     if (offhei_interf == None):
                         offhei_interf = 0
                     ind_hei = list(range(num_hei))
             #         mask_prof = numpy.asarray(range(num_prof - 2)) + 1
             #         mask_prof[range(num_prof/2 - 1,len(mask_prof))] += 1
                     mask_prof = numpy.asarray(list(range(num_prof)))
                     num_mask_prof = mask_prof.size
                     comp_mask_prof = [0, num_prof / 2]
                     # noise_exist:    Determina si la variable jnoise ha sido definida y contiene la informacion del ruido de cada canal
                     if (jnoise.size < num_channel or numpy.isnan(jnoise).any()):
                         jnoise = numpy.nan
                     noise_exist = jnoise[0] < numpy.Inf
                     # Subrutina de Remocion de la Interferencia
                     for ich in range(num_channel):
                         # Se ordena los espectros segun su potencia (menor a mayor)
                         power = jspectra[ich, mask_prof, :]
                         power = power[:, hei_interf]
                         power = power.sum(axis=0)
                         psort = power.ravel().argsort()
                         # Se estima la interferencia promedio en los Espectros de Potencia empleando
                         junkspc_interf = jspectra[ich, :, hei_interf[psort[list(range(
                             offhei_interf, nhei_interf + offhei_interf))]]]
                         if noise_exist:
                             #    tmp_noise = jnoise[ich] / num_prof
                             tmp_noise = jnoise[ich]
                         junkspc_interf = junkspc_interf - tmp_noise
                         #junkspc_interf[:,comp_mask_prof] = 0
                         jspc_interf = junkspc_interf.sum(axis=0) / nhei_interf
                         jspc_interf = jspc_interf.transpose()
                         # Calculando el espectro de interferencia promedio
                         noiseid = numpy.where(
                             jspc_interf <= tmp_noise / numpy.sqrt(num_incoh))
                         noiseid = noiseid[0]
                         cnoiseid = noiseid.size
                         interfid = numpy.where(
                             jspc_interf > tmp_noise / numpy.sqrt(num_incoh))
                         interfid = interfid[0]
                         cinterfid = interfid.size
                         if (cnoiseid > 0):
                             jspc_interf[noiseid] = 0
                         # Expandiendo los perfiles a limpiar
                         if (cinterfid > 0):
                             new_interfid = (
                                 numpy.r_[interfid - 1, interfid, interfid + 1] + num_prof) % num_prof
                             new_interfid = numpy.asarray(new_interfid)
                             new_interfid = {x for x in new_interfid}
                             new_interfid = numpy.array(list(new_interfid))
                             new_cinterfid = new_interfid.size
                         else:
                             new_cinterfid = 0
                         for ip in range(new_cinterfid):
                             ind = junkspc_interf[:, new_interfid[ip]].ravel().argsort()
                             jspc_interf[new_interfid[ip]
                                         ] = junkspc_interf[ind[nhei_interf // 2], new_interfid[ip]]
                         jspectra[ich, :, ind_hei] = jspectra[ich, :,
                                                              ind_hei] - jspc_interf  # Corregir indices
                         # Removiendo la interferencia del punto de mayor interferencia
                         ListAux = jspc_interf[mask_prof].tolist()
                         maxid = ListAux.index(max(ListAux))
                         if cinterfid > 0:
                             for ip in range(cinterfid * (interf == 2) - 1):
                                 ind = (jspectra[ich, interfid[ip], :] < tmp_noise *
                                        (1 + 1 / numpy.sqrt(num_incoh))).nonzero()
                                 cind = len(ind)
                                 if (cind > 0):
                                     jspectra[ich, interfid[ip], ind] = tmp_noise * \
                                         (1 + (numpy.random.uniform(cind) - 0.5) /
                                          numpy.sqrt(num_incoh))
                             ind = numpy.array([-2, -1, 1, 2])
                             xx = numpy.zeros([4, 4])
                             for id1 in range(4):
                                 xx[:, id1] = ind[id1]**numpy.asarray(list(range(4)))
                             xx_inv = numpy.linalg.inv(xx)
                             xx = xx_inv[:, 0]
                             ind = (ind + maxid + num_mask_prof) % num_mask_prof
                             yy = jspectra[ich, mask_prof[ind], :]
                             jspectra[ich, mask_prof[maxid], :] = numpy.dot(
                                 yy.transpose(), xx)
                         indAux = (jspectra[ich, :, :] < tmp_noise *
                                   (1 - 1 / numpy.sqrt(num_incoh))).nonzero()
                         jspectra[ich, indAux[0], indAux[1]] = tmp_noise * \
                             (1 - 1 / numpy.sqrt(num_incoh))
                     # Remocion de Interferencia en el Cross Spectra
                     if jcspectra is None:
                         return jspectra, jcspectra
                     num_pairs = int(jcspectra.size / (num_prof * num_hei))
                     jcspectra = jcspectra.reshape(num_pairs, num_prof, num_hei)
                     for ip in range(num_pairs):
                         #-------------------------------------------
                         cspower = numpy.abs(jcspectra[ip, mask_prof, :])
                         cspower = cspower[:, hei_interf]
                         cspower = cspower.sum(axis=0)
                         cspsort = cspower.ravel().argsort()
                         junkcspc_interf = jcspectra[ip, :, hei_interf[cspsort[list(range(
                             offhei_interf, nhei_interf + offhei_interf))]]]
                         junkcspc_interf = junkcspc_interf.transpose()
                         jcspc_interf = junkcspc_interf.sum(axis=1) / nhei_interf
                         ind = numpy.abs(jcspc_interf[mask_prof]).ravel().argsort()
                         median_real = int(numpy.median(numpy.real(
                             junkcspc_interf[mask_prof[ind[list(range(3 * num_prof // 4))]], :])))
                         median_imag = int(numpy.median(numpy.imag(
                             junkcspc_interf[mask_prof[ind[list(range(3 * num_prof // 4))]], :])))
                         comp_mask_prof = [int(e) for e in comp_mask_prof]
                         junkcspc_interf[comp_mask_prof, :] = numpy.complex(
                             median_real, median_imag)
                         for iprof in range(num_prof):
                             ind = numpy.abs(junkcspc_interf[iprof, :]).ravel().argsort()
                             jcspc_interf[iprof] = junkcspc_interf[iprof, ind[nhei_interf // 2]]
                         # Removiendo la Interferencia
                         jcspectra[ip, :, ind_hei] = jcspectra[ip,
                                                               :, ind_hei] - jcspc_interf
                         ListAux = numpy.abs(jcspc_interf[mask_prof]).tolist()
                         maxid = ListAux.index(max(ListAux))
                         ind = numpy.array([-2, -1, 1, 2])
                         xx = numpy.zeros([4, 4])
                         for id1 in range(4):
                             xx[:, id1] = ind[id1]**numpy.asarray(list(range(4)))
                         xx_inv = numpy.linalg.inv(xx)
                         xx = xx_inv[:, 0]
                         ind = (ind + maxid + num_mask_prof) % num_mask_prof
                         yy = jcspectra[ip, mask_prof[ind], :]
                         jcspectra[ip, mask_prof[maxid], :] = numpy.dot(yy.transpose(), xx)
                     # Guardar Resultados
                     self.dataOut.data_spc = jspectra
                     self.dataOut.data_cspc = jcspectra
                     return 1
                 def run(self, dataOut, interf = 2,hei_interf = None, nhei_interf = None, offhei_interf = None, mode=1):
                     self.dataOut = dataOut
                     if mode == 1:
                         self.removeInterference(interf = 2,hei_interf = None, nhei_interf = None, offhei_interf = None)
                     elif mode == 2:
                         self.removeInterference2()
                     return self.dataOut
             class IncohInt(Operation):
                 __profIndex = 0
                 __withOverapping = False
                 __byTime = False
                 __initime = None
                 __lastdatatime = None
                 __integrationtime = None
                 __buffer_spc = None
                 __buffer_cspc = None
                 __buffer_dc = None
                 __dataReady = False
                 __timeInterval = None
                 n = None
                 def __init__(self):
                     Operation.__init__(self)
                 def setup(self, n=None, timeInterval=None, overlapping=False):
                     """
                     Set the parameters of the integration class.
                     Inputs:
                         n        :    Number of coherent integrations
                         timeInterval   :    Time of integration. If the parameter "n" is selected this one does not work
                         overlapping    :
                     """
                     self.__initime = None
                     self.__lastdatatime = 0
                     self.__buffer_spc = 0
                     self.__buffer_cspc = 0
                     self.__buffer_dc = 0
                     self.__profIndex = 0
                     self.__dataReady = False
                     self.__byTime = False
                     if n is None and timeInterval is None:
                         raise ValueError("n or timeInterval should be specified ...")
                     if n is not None:
                         self.n = int(n)
                     else:
                         self.__integrationtime = int(timeInterval)
                         self.n = None
                         self.__byTime = True
                 def putData(self, data_spc, data_cspc, data_dc):
                     """
                     Add a profile to the __buffer_spc and increase in one the __profileIndex
                     """
                     self.__buffer_spc += data_spc
                     if data_cspc is None:
                         self.__buffer_cspc = None
                     else:
                         self.__buffer_cspc += data_cspc
                     if data_dc is None:
                         self.__buffer_dc = None
                     else:
                         self.__buffer_dc += data_dc
                     self.__profIndex += 1
                     return
                 def pushData(self):
                     """
                     Return the sum of the last profiles and the profiles used in the sum.
                     Affected:
                     self.__profileIndex
                     """
                     data_spc = self.__buffer_spc
                     data_cspc = self.__buffer_cspc
                     data_dc = self.__buffer_dc
                     n = self.__profIndex
                     self.__buffer_spc = 0
                     self.__buffer_cspc = 0
                     self.__buffer_dc = 0
                     self.__profIndex = 0
                     return data_spc, data_cspc, data_dc, n
                 def byProfiles(self, *args):
                     self.__dataReady = False
                     avgdata_spc = None
                     avgdata_cspc = None
                     avgdata_dc = None
                     self.putData(*args)
                     if self.__profIndex == self.n:
                         avgdata_spc, avgdata_cspc, avgdata_dc, n = self.pushData()
                         self.n = n
                         self.__dataReady = True
                     return avgdata_spc, avgdata_cspc, avgdata_dc
                 def byTime(self, datatime, *args):
                     self.__dataReady = False
                     avgdata_spc = None
                     avgdata_cspc = None
                     avgdata_dc = None
                     self.putData(*args)
                     if (datatime - self.__initime) >= self.__integrationtime:
                         avgdata_spc, avgdata_cspc, avgdata_dc, n = self.pushData()
                         self.n = n
                         self.__dataReady = True
                     return avgdata_spc, avgdata_cspc, avgdata_dc
                 def integrate(self, datatime, *args):
                     if self.__profIndex == 0:
                         self.__initime = datatime
                     if self.__byTime:
                         avgdata_spc, avgdata_cspc, avgdata_dc = self.byTime(
                             datatime, *args)
                     else:
                         avgdata_spc, avgdata_cspc, avgdata_dc = self.byProfiles(*args)
                     if not self.__dataReady:
                         return None, None, None, None
                     return self.__initime, avgdata_spc, avgdata_cspc, avgdata_dc
                 def run(self, dataOut, n=None, timeInterval=None, overlapping=False):
                     if n == 1:
                         return dataOut
                     dataOut.flagNoData = True
                     if not self.isConfig:
                         self.setup(n, timeInterval, overlapping)
                         self.isConfig = True
                     avgdatatime, avgdata_spc, avgdata_cspc, avgdata_dc = self.integrate(dataOut.utctime,
                                                                                         dataOut.data_spc,
                                                                                         dataOut.data_cspc,
                                                                                         dataOut.data_dc)
                     if self.__dataReady:
                         dataOut.data_spc = avgdata_spc
                         dataOut.data_cspc = avgdata_cspc
                         dataOut.data_dc = avgdata_dc
                         dataOut.nIncohInt *= self.n
                         dataOut.utctime = avgdatatime
                         dataOut.flagNoData = False
                     return dataOut
             class dopplerFlip(Operation):
                 def run(self, dataOut):
                     # arreglo 1: (num_chan, num_profiles, num_heights)
                     self.dataOut = dataOut
                     # JULIA-oblicua, indice 2
                     # arreglo 2: (num_profiles, num_heights)
                     jspectra = self.dataOut.data_spc[2]
                     jspectra_tmp = numpy.zeros(jspectra.shape)
                     num_profiles = jspectra.shape[0]
                     freq_dc = int(num_profiles / 2)
                     # Flip con for
                     for j in range(num_profiles):
                         jspectra_tmp[num_profiles-j-1]= jspectra[j]
                     # Intercambio perfil de DC con perfil inmediato anterior
                     jspectra_tmp[freq_dc-1]= jspectra[freq_dc-1]
                     jspectra_tmp[freq_dc]= jspectra[freq_dc]
                     # canal modificado es re-escrito en el arreglo de canales
                     self.dataOut.data_spc[2] = jspectra_tmp
                     return self.dataOut

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