@@ -1,607 +1,612 | |||
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1 | 1 | import os |
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2 | 2 | import numpy |
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3 | 3 | import time, datetime |
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4 | 4 | import mpldriver |
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5 | 5 | |
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6 | 6 | |
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7 | 7 | import Queue |
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8 | 8 | import threading |
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9 | 9 | |
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10 | 10 | def isRealtime(utcdatatime): |
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11 | 11 | utcnow = time.mktime(time.localtime()) |
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12 | 12 | delta = abs(utcnow - utcdatatime) # abs |
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13 | 13 | if delta >= 30.: |
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14 | 14 | return False |
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15 | 15 | return True |
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16 | 16 | |
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17 | 17 | |
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18 | 18 | |
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19 | 19 | |
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20 | 20 | class Figure: |
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21 | 21 | |
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22 | 22 | __driver = mpldriver |
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23 | 23 | __isConfigThread = False |
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24 | 24 | fig = None |
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25 | 25 | |
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26 | 26 | id = None |
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27 | 27 | wintitle = None |
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28 | 28 | width = None |
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29 | 29 | height = None |
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30 | 30 | nplots = None |
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31 | 31 | timerange = None |
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32 | 32 | |
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33 | 33 | axesObjList = [] |
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34 | 34 | |
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35 | 35 | WIDTH = None |
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36 | 36 | HEIGHT = None |
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37 | 37 | PREFIX = 'fig' |
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38 | 38 | |
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39 | 39 | xmin = None |
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40 | 40 | xmax = None |
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41 | 41 | |
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42 | 42 | def __init__(self): |
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43 | 43 | |
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44 | 44 | raise ValueError, "This method is not implemented" |
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45 | 45 | |
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46 | 46 | def __del__(self): |
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47 | 47 | |
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48 | 48 | self.__driver.closeFigure() |
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49 | 49 | |
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50 | 50 | def getFilename(self, name, ext='.png'): |
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51 | 51 | |
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52 | 52 | path = '%s%03d' %(self.PREFIX, self.id) |
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53 | 53 | filename = '%s_%s%s' %(self.PREFIX, name, ext) |
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54 | 54 | return os.path.join(path, filename) |
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55 | 55 | |
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56 | 56 | def getAxesObjList(self): |
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57 | 57 | |
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58 | 58 | return self.axesObjList |
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59 | 59 | |
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60 | 60 | def getSubplots(self): |
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61 | 61 | |
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62 | 62 | raise ValueError, "Abstract method: This method should be defined" |
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63 | 63 | |
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64 | 64 | def getScreenDim(self, widthplot, heightplot): |
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65 | 65 | |
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66 | 66 | nrow, ncol = self.getSubplots() |
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67 | 67 | |
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68 | 68 | widthscreen = widthplot*ncol |
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69 | 69 | heightscreen = heightplot*nrow |
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70 | 70 | |
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71 | 71 | return widthscreen, heightscreen |
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72 | 72 | |
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73 | 73 | def getTimeLim(self, x, xmin=None, xmax=None, timerange=None): |
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74 | 74 | |
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75 |
if |
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75 | if xmin != None and xmax != None: | |
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76 | 76 | if timerange == None: |
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77 |
timerange = |
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78 |
xmin = |
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79 |
xmax = |
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77 | timerange = xmax - xmin | |
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78 | xmin = xmin + timerange | |
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79 | xmax = xmax + timerange | |
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80 | 80 | |
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81 | 81 | return xmin, xmax |
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82 | 82 | |
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83 | 83 | |
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84 |
if timerange != None and |
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84 | if timerange != None and xmin == None and xmax == None: | |
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85 | 85 | txmin = x[0] - x[0]%timerange |
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86 | else: | |
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87 | txmin = numpy.min(x) | |
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88 | timerange = 60*60*2 | |
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89 | ||
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90 | if xmin == None and xmax == None: | |
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86 | 91 | thisdatetime = datetime.datetime.utcfromtimestamp(txmin) |
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87 | 92 | thisdate = datetime.datetime.combine(thisdatetime.date(), datetime.time(0,0,0)) |
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88 | 93 | xmin = (thisdatetime - thisdate).seconds/(60*60.) |
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89 | 94 | xmax = xmin + timerange/(60*60.) |
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90 | 95 | |
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91 | 96 | |
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92 | 97 | if timerange == None: |
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93 | txmin = numpy.min(x) | |
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98 | ||
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94 | 99 | thisdatetime = datetime.datetime.utcfromtimestamp(txmin) |
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95 | 100 | thisdate = datetime.datetime.combine(thisdatetime.date(), datetime.time(0,0,0)) |
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96 | 101 | |
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97 | 102 | mindt = thisdate + datetime.timedelta(hours=xmin) - datetime.timedelta(seconds=time.timezone) |
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98 | 103 | xmin_sec = time.mktime(mindt.timetuple()) |
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99 | 104 | |
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100 | 105 | maxdt = thisdate + datetime.timedelta(hours=xmax) - datetime.timedelta(seconds=time.timezone) |
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101 | 106 | xmax_sec = time.mktime(maxdt.timetuple()) |
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102 | 107 | |
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103 | 108 | return xmin_sec, xmax_sec |
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104 | 109 | |
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105 | 110 | |
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106 | 111 | |
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107 | 112 | |
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108 | 113 | |
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109 | 114 | # if timerange != None: |
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110 | 115 | # txmin = x[0] - x[0]%timerange |
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111 | 116 | # else: |
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112 | 117 | # txmin = numpy.min(x) |
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113 | 118 | # |
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114 | 119 | # thisdatetime = datetime.datetime.utcfromtimestamp(txmin) |
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115 | 120 | # thisdate = datetime.datetime.combine(thisdatetime.date(), datetime.time(0,0,0)) |
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116 | 121 | # |
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117 | 122 | # #################################################### |
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118 | 123 | # #If the x is out of xrange |
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119 | 124 | # if xmax != None: |
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120 | 125 | # if xmax < (thisdatetime - thisdate).seconds/(60*60.): |
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121 | 126 | # xmin = None |
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122 | 127 | # xmax = None |
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123 | 128 | # |
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124 | 129 | # if xmin == None: |
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125 | 130 | # td = thisdatetime - thisdate |
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126 | 131 | # xmin = td.seconds/(60*60.) |
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127 | 132 | # |
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128 | 133 | # if xmax == None: |
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129 | 134 | # xmax = xmin + self.timerange/(60*60.) |
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130 | 135 | # |
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131 | 136 | # mindt = thisdate + datetime.timedelta(hours=xmin) - datetime.timedelta(seconds=time.timezone) |
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132 | 137 | # tmin = time.mktime(mindt.timetuple()) |
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133 | 138 | # |
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134 | 139 | # maxdt = thisdate + datetime.timedelta(hours=xmax) - datetime.timedelta(seconds=time.timezone) |
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135 | 140 | # tmax = time.mktime(maxdt.timetuple()) |
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136 | 141 | # |
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137 | 142 | # #self.timerange = tmax - tmin |
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138 | 143 | # |
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139 | 144 | # return tmin, tmax |
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140 | 145 | |
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141 | 146 | def init(self, id, nplots, wintitle): |
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142 | 147 | |
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143 | 148 | raise ValueError, "This method has been replaced with createFigure" |
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144 | 149 | |
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145 | 150 | def createFigure(self, id, wintitle, widthplot=None, heightplot=None, show=True): |
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146 | 151 | |
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147 | 152 | """ |
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148 | 153 | Crea la figura de acuerdo al driver y parametros seleccionados seleccionados. |
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149 | 154 | Las dimensiones de la pantalla es calculada a partir de los atributos self.WIDTH |
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150 | 155 | y self.HEIGHT y el numero de subplots (nrow, ncol) |
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151 | 156 | |
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152 | 157 | Input: |
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153 | 158 | id : Los parametros necesarios son |
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154 | 159 | wintitle : |
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155 | 160 | |
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156 | 161 | """ |
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157 | 162 | |
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158 | 163 | if widthplot == None: |
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159 | 164 | widthplot = self.WIDTH |
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160 | 165 | |
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161 | 166 | if heightplot == None: |
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162 | 167 | heightplot = self.HEIGHT |
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163 | 168 | |
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164 | 169 | self.id = id |
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165 | 170 | |
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166 | 171 | self.wintitle = wintitle |
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167 | 172 | |
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168 | 173 | self.widthscreen, self.heightscreen = self.getScreenDim(widthplot, heightplot) |
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169 | 174 | |
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170 | 175 | self.fig = self.__driver.createFigure(id=self.id, |
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171 | 176 | wintitle=self.wintitle, |
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172 | 177 | width=self.widthscreen, |
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173 | 178 | height=self.heightscreen, |
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174 | 179 | show=show) |
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175 | 180 | |
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176 | 181 | self.axesObjList = [] |
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177 | 182 | |
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178 | 183 | |
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179 | 184 | def setDriver(self, driver=mpldriver): |
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180 | 185 | |
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181 | 186 | self.__driver = driver |
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182 | 187 | |
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183 | 188 | def setTitle(self, title): |
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184 | 189 | |
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185 | 190 | self.__driver.setTitle(self.fig, title) |
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186 | 191 | |
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187 | 192 | def setWinTitle(self, title): |
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188 | 193 | |
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189 | 194 | self.__driver.setWinTitle(self.fig, title=title) |
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190 | 195 | |
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191 | 196 | def setTextFromAxes(self, text): |
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192 | 197 | |
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193 | 198 | raise ValueError, "Este metodo ha sido reemplazaado con el metodo setText de la clase Axes" |
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194 | 199 | |
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195 | 200 | def makeAxes(self, nrow, ncol, xpos, ypos, colspan, rowspan): |
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196 | 201 | |
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197 | 202 | raise ValueError, "Este metodo ha sido reemplazaado con el metodo addAxes" |
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198 | 203 | |
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199 | 204 | def addAxes(self, *args): |
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200 | 205 | """ |
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201 | 206 | |
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202 | 207 | Input: |
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203 | 208 | *args : Los parametros necesarios son |
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204 | 209 | nrow, ncol, xpos, ypos, colspan, rowspan |
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205 | 210 | """ |
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206 | 211 | |
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207 | 212 | axesObj = Axes(self.fig, *args) |
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208 | 213 | self.axesObjList.append(axesObj) |
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209 | 214 | |
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210 | 215 | def saveFigure(self, figpath, figfile, *args): |
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211 | 216 | |
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212 | 217 | filename = os.path.join(figpath, figfile) |
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213 | 218 | |
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214 | 219 | fullpath = os.path.split(filename)[0] |
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215 | 220 | |
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216 | 221 | if not os.path.exists(fullpath): |
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217 | 222 | subpath = os.path.split(fullpath)[0] |
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218 | 223 | |
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219 | 224 | if not os.path.exists(subpath): |
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220 | 225 | os.mkdir(subpath) |
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221 | 226 | |
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222 | 227 | os.mkdir(fullpath) |
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223 | 228 | |
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224 | 229 | self.__driver.saveFigure(self.fig, filename, *args) |
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225 | 230 | |
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226 | 231 | |
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227 | 232 | |
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228 | 233 | |
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229 | 234 | def getNameToFtp(self, thisDatetime, FTP_WEI, EXP_CODE, SUB_EXP_CODE, PLOT_CODE, PLOT_POS): |
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230 | 235 | YEAR_STR = '%4.4d'%thisDatetime.timetuple().tm_year |
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231 | 236 | DOY_STR = '%3.3d'%thisDatetime.timetuple().tm_yday |
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232 | 237 | FTP_WEI = '%2.2d'%FTP_WEI |
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233 | 238 | EXP_CODE = '%3.3d'%EXP_CODE |
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234 | 239 | SUB_EXP_CODE = '%2.2d'%SUB_EXP_CODE |
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235 | 240 | PLOT_CODE = '%2.2d'%PLOT_CODE |
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236 | 241 | PLOT_POS = '%2.2d'%PLOT_POS |
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237 | 242 | name = YEAR_STR + DOY_STR + FTP_WEI + EXP_CODE + SUB_EXP_CODE + PLOT_CODE + PLOT_POS |
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238 | 243 | return name |
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239 | 244 | |
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240 | 245 | def draw(self): |
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241 | 246 | |
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242 | 247 | self.__driver.draw(self.fig) |
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243 | 248 | |
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244 | 249 | def run(self): |
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245 | 250 | |
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246 | 251 | raise ValueError, "This method is not implemented" |
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247 | 252 | |
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248 | 253 | def close(self): |
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249 | 254 | |
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250 | 255 | self.__driver.show(True) |
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251 | 256 | |
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252 | 257 | axesList = property(getAxesObjList) |
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253 | 258 | |
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254 | 259 | |
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255 | 260 | class Axes: |
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256 | 261 | |
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257 | 262 | __driver = mpldriver |
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258 | 263 | fig = None |
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259 | 264 | ax = None |
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260 | 265 | plot = None |
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261 | 266 | __missing = 1E30 |
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262 | 267 | __firsttime = None |
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263 | 268 | |
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264 | 269 | __showprofile = False |
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265 | 270 | |
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266 | 271 | xmin = None |
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267 | 272 | xmax = None |
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268 | 273 | ymin = None |
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269 | 274 | ymax = None |
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270 | 275 | zmin = None |
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271 | 276 | zmax = None |
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272 | 277 | |
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273 | 278 | x_buffer = None |
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274 | 279 | z_buffer = None |
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275 | 280 | |
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276 | 281 | decimationx = None |
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277 | 282 | decimationy = None |
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278 | 283 | |
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279 | 284 | __MAXNUMX = 300 |
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280 | 285 | __MAXNUMY = 150 |
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281 | 286 | |
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282 | 287 | def __init__(self, *args): |
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283 | 288 | |
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284 | 289 | """ |
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285 | 290 | |
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286 | 291 | Input: |
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287 | 292 | *args : Los parametros necesarios son |
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288 | 293 | fig, nrow, ncol, xpos, ypos, colspan, rowspan |
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289 | 294 | """ |
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290 | 295 | |
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291 | 296 | ax = self.__driver.createAxes(*args) |
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292 | 297 | self.fig = args[0] |
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293 | 298 | self.ax = ax |
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294 | 299 | self.plot = None |
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295 | 300 | |
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296 | 301 | self.__firsttime = True |
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297 | 302 | self.idlineList = [] |
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298 | 303 | |
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299 | 304 | self.x_buffer = numpy.array([]) |
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300 | 305 | self.z_buffer = numpy.array([]) |
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301 | 306 | |
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302 | 307 | def setText(self, text): |
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303 | 308 | |
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304 | 309 | self.__driver.setAxesText(self.ax, text) |
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305 | 310 | |
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306 | 311 | def setXAxisAsTime(self): |
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307 | 312 | pass |
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308 | 313 | |
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309 | 314 | def pline(self, x, y, |
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310 | 315 | xmin=None, xmax=None, |
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311 | 316 | ymin=None, ymax=None, |
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312 | 317 | xlabel='', ylabel='', |
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313 | 318 | title='', |
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314 | 319 | **kwargs): |
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315 | 320 | |
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316 | 321 | """ |
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317 | 322 | |
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318 | 323 | Input: |
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319 | 324 | x : |
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320 | 325 | y : |
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321 | 326 | xmin : |
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322 | 327 | xmax : |
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323 | 328 | ymin : |
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324 | 329 | ymax : |
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325 | 330 | xlabel : |
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326 | 331 | ylabel : |
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327 | 332 | title : |
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328 | 333 | **kwargs : Los parametros aceptados son |
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329 | 334 | |
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330 | 335 | ticksize |
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331 | 336 | ytick_visible |
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332 | 337 | """ |
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333 | 338 | |
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334 | 339 | if self.__firsttime: |
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335 | 340 | |
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336 | 341 | if xmin == None: xmin = numpy.nanmin(x) |
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337 | 342 | if xmax == None: xmax = numpy.nanmax(x) |
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338 | 343 | if ymin == None: ymin = numpy.nanmin(y) |
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339 | 344 | if ymax == None: ymax = numpy.nanmax(y) |
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340 | 345 | |
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341 | 346 | self.plot = self.__driver.createPline(self.ax, x, y, |
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342 | 347 | xmin, xmax, |
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343 | 348 | ymin, ymax, |
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344 | 349 | xlabel=xlabel, |
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345 | 350 | ylabel=ylabel, |
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346 | 351 | title=title, |
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347 | 352 | **kwargs) |
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348 | 353 | |
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349 | 354 | self.idlineList.append(0) |
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350 | 355 | self.__firsttime = False |
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351 | 356 | return |
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352 | 357 | |
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353 | 358 | self.__driver.pline(self.plot, x, y, xlabel=xlabel, |
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354 | 359 | ylabel=ylabel, |
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355 | 360 | title=title) |
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356 | 361 | |
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357 | 362 | def addpline(self, x, y, idline, **kwargs): |
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358 | 363 | lines = self.ax.lines |
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359 | 364 | |
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360 | 365 | if idline in self.idlineList: |
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361 | 366 | self.__driver.set_linedata(self.ax, x, y, idline) |
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362 | 367 | |
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363 | 368 | if idline not in(self.idlineList): |
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364 | 369 | self.__driver.addpline(self.ax, x, y, **kwargs) |
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365 | 370 | self.idlineList.append(idline) |
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366 | 371 | |
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367 | 372 | return |
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368 | 373 | |
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369 | 374 | def pmultiline(self, x, y, |
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370 | 375 | xmin=None, xmax=None, |
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371 | 376 | ymin=None, ymax=None, |
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372 | 377 | xlabel='', ylabel='', |
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373 | 378 | title='', |
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374 | 379 | **kwargs): |
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375 | 380 | |
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376 | 381 | if self.__firsttime: |
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377 | 382 | |
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378 | 383 | if xmin == None: xmin = numpy.nanmin(x) |
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379 | 384 | if xmax == None: xmax = numpy.nanmax(x) |
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380 | 385 | if ymin == None: ymin = numpy.nanmin(y) |
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381 | 386 | if ymax == None: ymax = numpy.nanmax(y) |
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382 | 387 | |
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383 | 388 | self.plot = self.__driver.createPmultiline(self.ax, x, y, |
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384 | 389 | xmin, xmax, |
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385 | 390 | ymin, ymax, |
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386 | 391 | xlabel=xlabel, |
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387 | 392 | ylabel=ylabel, |
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388 | 393 | title=title, |
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389 | 394 | **kwargs) |
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390 | 395 | self.__firsttime = False |
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391 | 396 | return |
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392 | 397 | |
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393 | 398 | self.__driver.pmultiline(self.plot, x, y, xlabel=xlabel, |
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394 | 399 | ylabel=ylabel, |
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395 | 400 | title=title) |
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396 | 401 | |
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397 | 402 | def pmultilineyaxis(self, x, y, |
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398 | 403 | xmin=None, xmax=None, |
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399 | 404 | ymin=None, ymax=None, |
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400 | 405 | xlabel='', ylabel='', |
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401 | 406 | title='', |
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402 | 407 | **kwargs): |
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403 | 408 | |
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404 | 409 | if self.__firsttime: |
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405 | 410 | |
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406 | 411 | if xmin == None: xmin = numpy.nanmin(x) |
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407 | 412 | if xmax == None: xmax = numpy.nanmax(x) |
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408 | 413 | if ymin == None: ymin = numpy.nanmin(y) |
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409 | 414 | if ymax == None: ymax = numpy.nanmax(y) |
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410 | 415 | |
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411 | 416 | self.plot = self.__driver.createPmultilineYAxis(self.ax, x, y, |
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412 | 417 | xmin, xmax, |
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413 | 418 | ymin, ymax, |
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414 | 419 | xlabel=xlabel, |
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415 | 420 | ylabel=ylabel, |
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416 | 421 | title=title, |
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417 | 422 | **kwargs) |
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418 | 423 | if self.xmin == None: self.xmin = xmin |
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419 | 424 | if self.xmax == None: self.xmax = xmax |
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420 | 425 | if self.ymin == None: self.ymin = ymin |
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421 | 426 | if self.ymax == None: self.ymax = ymax |
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422 | 427 | |
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423 | 428 | self.__firsttime = False |
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424 | 429 | return |
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425 | 430 | |
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426 | 431 | self.__driver.pmultilineyaxis(self.plot, x, y, xlabel=xlabel, |
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427 | 432 | ylabel=ylabel, |
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428 | 433 | title=title) |
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429 | 434 | |
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430 | 435 | def pcolor(self, x, y, z, |
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431 | 436 | xmin=None, xmax=None, |
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432 | 437 | ymin=None, ymax=None, |
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433 | 438 | zmin=None, zmax=None, |
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434 | 439 | xlabel='', ylabel='', |
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435 | 440 | title='', rti = False, colormap='jet', |
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436 | 441 | **kwargs): |
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437 | 442 | |
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438 | 443 | """ |
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439 | 444 | Input: |
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440 | 445 | x : |
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441 | 446 | y : |
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442 | 447 | x : |
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443 | 448 | xmin : |
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444 | 449 | xmax : |
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445 | 450 | ymin : |
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446 | 451 | ymax : |
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447 | 452 | zmin : |
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448 | 453 | zmax : |
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449 | 454 | xlabel : |
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450 | 455 | ylabel : |
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451 | 456 | title : |
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452 | 457 | **kwargs : Los parametros aceptados son |
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453 | 458 | ticksize=9, |
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454 | 459 | cblabel='' |
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455 | 460 | rti = True or False |
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456 | 461 | """ |
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457 | 462 | |
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458 | 463 | if self.__firsttime: |
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459 | 464 | |
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460 | 465 | if xmin == None: xmin = numpy.nanmin(x) |
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461 | 466 | if xmax == None: xmax = numpy.nanmax(x) |
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462 | 467 | if ymin == None: ymin = numpy.nanmin(y) |
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463 | 468 | if ymax == None: ymax = numpy.nanmax(y) |
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464 | 469 | if zmin == None: zmin = numpy.nanmin(z) |
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465 | 470 | if zmax == None: zmax = numpy.nanmax(z) |
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466 | 471 | |
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467 | 472 | |
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468 | 473 | self.plot = self.__driver.createPcolor(self.ax, x, y, z, |
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469 | 474 | xmin, xmax, |
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470 | 475 | ymin, ymax, |
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471 | 476 | zmin, zmax, |
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472 | 477 | xlabel=xlabel, |
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473 | 478 | ylabel=ylabel, |
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474 | 479 | title=title, |
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475 | 480 | colormap=colormap, |
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476 | 481 | **kwargs) |
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477 | 482 | |
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478 | 483 | if self.xmin == None: self.xmin = xmin |
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479 | 484 | if self.xmax == None: self.xmax = xmax |
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480 | 485 | if self.ymin == None: self.ymin = ymin |
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481 | 486 | if self.ymax == None: self.ymax = ymax |
|
482 | 487 | if self.zmin == None: self.zmin = zmin |
|
483 | 488 | if self.zmax == None: self.zmax = zmax |
|
484 | 489 | |
|
485 | 490 | self.__firsttime = False |
|
486 | 491 | return |
|
487 | 492 | |
|
488 | 493 | if rti: |
|
489 | 494 | self.__driver.addpcolor(self.ax, x, y, z, self.zmin, self.zmax, |
|
490 | 495 | xlabel=xlabel, |
|
491 | 496 | ylabel=ylabel, |
|
492 | 497 | title=title, |
|
493 | 498 | colormap=colormap) |
|
494 | 499 | return |
|
495 | 500 | |
|
496 | 501 | self.__driver.pcolor(self.plot, z, |
|
497 | 502 | xlabel=xlabel, |
|
498 | 503 | ylabel=ylabel, |
|
499 | 504 | title=title) |
|
500 | 505 | |
|
501 | 506 | def pcolorbuffer(self, x, y, z, |
|
502 | 507 | xmin=None, xmax=None, |
|
503 | 508 | ymin=None, ymax=None, |
|
504 | 509 | zmin=None, zmax=None, |
|
505 | 510 | xlabel='', ylabel='', |
|
506 | 511 | title='', rti = True, colormap='jet', |
|
507 | 512 | maxNumX = None, maxNumY = None, |
|
508 | 513 | **kwargs): |
|
509 | 514 | |
|
510 | 515 | if maxNumX == None: |
|
511 | 516 | maxNumX = self.__MAXNUMX |
|
512 | 517 | |
|
513 | 518 | if maxNumY == None: |
|
514 | 519 | maxNumY = self.__MAXNUMY |
|
515 | 520 | |
|
516 | 521 | if self.__firsttime: |
|
517 | 522 | self.z_buffer = z |
|
518 | 523 | self.x_buffer = numpy.hstack((self.x_buffer, x)) |
|
519 | 524 | |
|
520 | 525 | if xmin == None: xmin = numpy.nanmin(x) |
|
521 | 526 | if xmax == None: xmax = numpy.nanmax(x) |
|
522 | 527 | if ymin == None: ymin = numpy.nanmin(y) |
|
523 | 528 | if ymax == None: ymax = numpy.nanmax(y) |
|
524 | 529 | if zmin == None: zmin = numpy.nanmin(z) |
|
525 | 530 | if zmax == None: zmax = numpy.nanmax(z) |
|
526 | 531 | |
|
527 | 532 | |
|
528 | 533 | self.plot = self.__driver.createPcolor(self.ax, self.x_buffer, y, z, |
|
529 | 534 | xmin, xmax, |
|
530 | 535 | ymin, ymax, |
|
531 | 536 | zmin, zmax, |
|
532 | 537 | xlabel=xlabel, |
|
533 | 538 | ylabel=ylabel, |
|
534 | 539 | title=title, |
|
535 | 540 | colormap=colormap, |
|
536 | 541 | **kwargs) |
|
537 | 542 | |
|
538 | 543 | if self.xmin == None: self.xmin = xmin |
|
539 | 544 | if self.xmax == None: self.xmax = xmax |
|
540 | 545 | if self.ymin == None: self.ymin = ymin |
|
541 | 546 | if self.ymax == None: self.ymax = ymax |
|
542 | 547 | if self.zmin == None: self.zmin = zmin |
|
543 | 548 | if self.zmax == None: self.zmax = zmax |
|
544 | 549 | |
|
545 | 550 | self.__firsttime = False |
|
546 | 551 | return |
|
547 | 552 | |
|
548 | 553 | self.x_buffer = numpy.hstack((self.x_buffer, x[-1])) |
|
549 | 554 | self.z_buffer = numpy.hstack((self.z_buffer, z)) |
|
550 | 555 | |
|
551 | 556 | if self.decimationx == None: |
|
552 | 557 | deltax = float(self.xmax - self.xmin)/maxNumX |
|
553 | 558 | deltay = float(self.ymax - self.ymin)/maxNumY |
|
554 | 559 | |
|
555 | 560 | resolutionx = self.x_buffer[2]-self.x_buffer[0] |
|
556 | 561 | resolutiony = y[1]-y[0] |
|
557 | 562 | |
|
558 | 563 | self.decimationx = numpy.ceil(deltax / resolutionx) |
|
559 | 564 | self.decimationy = numpy.ceil(deltay / resolutiony) |
|
560 | 565 | |
|
561 | 566 | z_buffer = self.z_buffer.reshape(-1,len(y)) |
|
562 | 567 | |
|
563 | 568 | x_buffer = self.x_buffer[::self.decimationx] |
|
564 | 569 | y_buffer = y[::self.decimationy] |
|
565 | 570 | z_buffer = z_buffer[::self.decimationx, ::self.decimationy] |
|
566 | 571 | #=================================================== |
|
567 | 572 | |
|
568 | 573 | x_buffer, y_buffer, z_buffer = self.__fillGaps(x_buffer, y_buffer, z_buffer) |
|
569 | 574 | |
|
570 | 575 | self.__driver.addpcolorbuffer(self.ax, x_buffer, y_buffer, z_buffer, self.zmin, self.zmax, |
|
571 | 576 | xlabel=xlabel, |
|
572 | 577 | ylabel=ylabel, |
|
573 | 578 | title=title, |
|
574 | 579 | colormap=colormap) |
|
575 | 580 | |
|
576 | 581 | def polar(self, x, y, |
|
577 | 582 | title='', xlabel='',ylabel='',**kwargs): |
|
578 | 583 | |
|
579 | 584 | if self.__firsttime: |
|
580 | 585 | self.plot = self.__driver.createPolar(self.ax, x, y, title = title, xlabel = xlabel, ylabel = ylabel) |
|
581 | 586 | self.__firsttime = False |
|
582 | 587 | self.x_buffer = x |
|
583 | 588 | self.y_buffer = y |
|
584 | 589 | return |
|
585 | 590 | |
|
586 | 591 | self.x_buffer = numpy.hstack((self.x_buffer,x)) |
|
587 | 592 | self.y_buffer = numpy.hstack((self.y_buffer,y)) |
|
588 | 593 | self.__driver.polar(self.plot, self.x_buffer, self.y_buffer, xlabel=xlabel, |
|
589 | 594 | ylabel=ylabel, |
|
590 | 595 | title=title) |
|
591 | 596 | |
|
592 | 597 | def __fillGaps(self, x_buffer, y_buffer, z_buffer): |
|
593 | 598 | |
|
594 | 599 | deltas = x_buffer[1:] - x_buffer[0:-1] |
|
595 | 600 | x_median = numpy.median(deltas) |
|
596 | 601 | |
|
597 | 602 | index = numpy.where(deltas >= 2*x_median) |
|
598 | 603 | |
|
599 | 604 | if len(index[0]) != 0: |
|
600 | 605 | z_buffer[index[0],::] = self.__missing |
|
601 | 606 | z_buffer = numpy.ma.masked_inside(z_buffer,0.99*self.__missing,1.01*self.__missing) |
|
602 | 607 | |
|
603 | 608 | return x_buffer, y_buffer, z_buffer |
|
604 | 609 | |
|
605 | 610 | |
|
606 | 611 | |
|
607 | 612 | No newline at end of file |
@@ -1,617 +1,619 | |||
|
1 | 1 | ''' |
|
2 | 2 | @author: Daniel Suarez |
|
3 | 3 | ''' |
|
4 | 4 | |
|
5 | 5 | import os |
|
6 | 6 | import sys |
|
7 | 7 | import glob |
|
8 | 8 | import fnmatch |
|
9 | 9 | import datetime |
|
10 | 10 | import time |
|
11 | 11 | import re |
|
12 | 12 | import h5py |
|
13 | 13 | import numpy |
|
14 | 14 | |
|
15 | 15 | from model.proc.jroproc_base import ProcessingUnit, Operation |
|
16 | 16 | from model.data.jroamisr import AMISR |
|
17 | 17 | |
|
18 | 18 | class RadacHeader(): |
|
19 | 19 | def __init__(self, fp): |
|
20 | 20 | header = 'Raw11/Data/RadacHeader' |
|
21 | 21 | self.beamCodeByPulse = fp.get(header+'/BeamCode') |
|
22 | 22 | self.beamCode = fp.get('Raw11/Data/Beamcodes') |
|
23 | 23 | self.code = fp.get(header+'/Code') |
|
24 | 24 | self.frameCount = fp.get(header+'/FrameCount') |
|
25 | 25 | self.modeGroup = fp.get(header+'/ModeGroup') |
|
26 | 26 | self.nsamplesPulse = fp.get(header+'/NSamplesPulse') |
|
27 | 27 | self.pulseCount = fp.get(header+'/PulseCount') |
|
28 | 28 | self.radacTime = fp.get(header+'/RadacTime') |
|
29 | 29 | self.timeCount = fp.get(header+'/TimeCount') |
|
30 | 30 | self.timeStatus = fp.get(header+'/TimeStatus') |
|
31 | 31 | |
|
32 | 32 | self.nrecords = self.pulseCount.shape[0] #nblocks |
|
33 | 33 | self.npulses = self.pulseCount.shape[1] #nprofile |
|
34 | 34 | self.nsamples = self.nsamplesPulse[0,0] #ngates |
|
35 | 35 | self.nbeams = self.beamCode.shape[1] |
|
36 | 36 | |
|
37 | 37 | |
|
38 | 38 | def getIndexRangeToPulse(self, idrecord=0): |
|
39 | 39 | #indexToZero = numpy.where(self.pulseCount.value[idrecord,:]==0) |
|
40 | 40 | #startPulseCountId = indexToZero[0][0] |
|
41 | 41 | #endPulseCountId = startPulseCountId - 1 |
|
42 | 42 | #range1 = numpy.arange(startPulseCountId,self.npulses,1) |
|
43 | 43 | #range2 = numpy.arange(0,startPulseCountId,1) |
|
44 | 44 | #return range1, range2 |
|
45 | 45 | |
|
46 | 46 | looking_zeros_index = numpy.where(self.pulseCount.value[idrecord,:]==0)[0] |
|
47 | 47 | getLastIndexZero = looking_zeros_index[-1] |
|
48 | 48 | index_data = numpy.arange(0,getLastIndexZero,1) |
|
49 | 49 | index_buffer = numpy.arange(getLastIndexZero,self.npulses,1) |
|
50 | 50 | return index_data, index_buffer |
|
51 | 51 | |
|
52 | 52 | class AMISRReader(ProcessingUnit): |
|
53 | 53 | |
|
54 | 54 | path = None |
|
55 | 55 | startDate = None |
|
56 | 56 | endDate = None |
|
57 | 57 | startTime = None |
|
58 | 58 | endTime = None |
|
59 | 59 | walk = None |
|
60 | 60 | isConfig = False |
|
61 | 61 | |
|
62 | 62 | def __init__(self): |
|
63 | 63 | self.set = None |
|
64 | 64 | self.subset = None |
|
65 | 65 | self.extension_file = '.h5' |
|
66 | 66 | self.dtc_str = 'dtc' |
|
67 | 67 | self.dtc_id = 0 |
|
68 | 68 | self.status = True |
|
69 | 69 | self.isConfig = False |
|
70 | 70 | self.dirnameList = [] |
|
71 | 71 | self.filenameList = [] |
|
72 | 72 | self.fileIndex = None |
|
73 | 73 | self.flagNoMoreFiles = False |
|
74 | 74 | self.flagIsNewFile = 0 |
|
75 | 75 | self.filename = '' |
|
76 | 76 | self.amisrFilePointer = None |
|
77 | 77 | self.radacHeaderObj = None |
|
78 | 78 | self.dataOut = self.__createObjByDefault() |
|
79 | 79 | self.datablock = None |
|
80 | 80 | self.rest_datablock = None |
|
81 | 81 | self.range = None |
|
82 | 82 | self.idrecord_count = 0 |
|
83 | 83 | self.profileIndex = 0 |
|
84 | 84 | self.index_amisr_sample = None |
|
85 | 85 | self.index_amisr_buffer = None |
|
86 | 86 | self.beamCodeByFrame = None |
|
87 | 87 | self.radacTimeByFrame = None |
|
88 | 88 | #atributos originales tal y como esta en el archivo de datos |
|
89 | 89 | self.beamCodesFromFile = None |
|
90 | 90 | self.radacTimeFromFile = None |
|
91 | 91 | self.rangeFromFile = None |
|
92 | 92 | self.dataByFrame = None |
|
93 | 93 | self.dataset = None |
|
94 | 94 | |
|
95 | 95 | self.beamCodeDict = {} |
|
96 | 96 | self.beamRangeDict = {} |
|
97 | 97 | |
|
98 | 98 | #experiment cgf file |
|
99 | 99 | self.npulsesint_fromfile = None |
|
100 | 100 | self.recordsperfile_fromfile = None |
|
101 | 101 | self.nbeamcodes_fromfile = None |
|
102 | 102 | self.ngates_fromfile = None |
|
103 | 103 | self.ippSeconds_fromfile = None |
|
104 | 104 | self.frequency_h5file = None |
|
105 | 105 | |
|
106 | 106 | |
|
107 | 107 | self.__firstFile = True |
|
108 | 108 | self.buffer_radactime = None |
|
109 | 109 | |
|
110 | 110 | self.index4_schain_datablock = None |
|
111 | 111 | self.index4_buffer = None |
|
112 | 112 | self.schain_datablock = None |
|
113 | 113 | self.buffer = None |
|
114 | 114 | self.linear_pulseCount = None |
|
115 | 115 | self.npulseByFrame = None |
|
116 | 116 | self.profileIndex_offset = None |
|
117 | 117 | self.timezone = 'ut' |
|
118 | 118 | |
|
119 | 119 | def __createObjByDefault(self): |
|
120 | 120 | |
|
121 | 121 | dataObj = AMISR() |
|
122 | 122 | |
|
123 | 123 | return dataObj |
|
124 | 124 | |
|
125 | 125 | def __setParameters(self,path,startDate,endDate,startTime,endTime,walk): |
|
126 | 126 | self.path = path |
|
127 | 127 | self.startDate = startDate |
|
128 | 128 | self.endDate = endDate |
|
129 | 129 | self.startTime = startTime |
|
130 | 130 | self.endTime = endTime |
|
131 | 131 | self.walk = walk |
|
132 | 132 | |
|
133 | 133 | def __checkPath(self): |
|
134 | 134 | if os.path.exists(self.path): |
|
135 | 135 | self.status = 1 |
|
136 | 136 | else: |
|
137 | 137 | self.status = 0 |
|
138 | 138 | print 'Path:%s does not exists'%self.path |
|
139 | 139 | |
|
140 | 140 | return |
|
141 | 141 | |
|
142 | 142 | def __selDates(self, amisr_dirname_format): |
|
143 | 143 | try: |
|
144 | 144 | year = int(amisr_dirname_format[0:4]) |
|
145 | 145 | month = int(amisr_dirname_format[4:6]) |
|
146 | 146 | dom = int(amisr_dirname_format[6:8]) |
|
147 | 147 | thisDate = datetime.date(year,month,dom) |
|
148 | 148 | |
|
149 | 149 | if (thisDate>=self.startDate and thisDate <= self.endDate): |
|
150 | 150 | return amisr_dirname_format |
|
151 | 151 | except: |
|
152 | 152 | return None |
|
153 | 153 | |
|
154 | 154 | def __findDataForDates(self): |
|
155 | 155 | |
|
156 | 156 | |
|
157 | 157 | |
|
158 | 158 | if not(self.status): |
|
159 | 159 | return None |
|
160 | 160 | |
|
161 | 161 | pat = '\d+.\d+' |
|
162 | 162 | dirnameList = [re.search(pat,x) for x in os.listdir(self.path)] |
|
163 | 163 | dirnameList = filter(lambda x:x!=None,dirnameList) |
|
164 | 164 | dirnameList = [x.string for x in dirnameList] |
|
165 | 165 | dirnameList = [self.__selDates(x) for x in dirnameList] |
|
166 | 166 | dirnameList = filter(lambda x:x!=None,dirnameList) |
|
167 | 167 | if len(dirnameList)>0: |
|
168 | 168 | self.status = 1 |
|
169 | 169 | self.dirnameList = dirnameList |
|
170 | 170 | self.dirnameList.sort() |
|
171 | 171 | else: |
|
172 | 172 | self.status = 0 |
|
173 | 173 | return None |
|
174 | 174 | |
|
175 | 175 | def __getTimeFromData(self): |
|
176 | 176 | startDateTime_Reader = datetime.datetime.combine(self.startDate,self.startTime) |
|
177 | 177 | endDateTime_Reader = datetime.datetime.combine(self.endDate,self.endTime) |
|
178 | 178 | |
|
179 | 179 | print 'Filtering Files from %s to %s'%(startDateTime_Reader, endDateTime_Reader) |
|
180 | 180 | print '........................................' |
|
181 | 181 | filter_filenameList = [] |
|
182 | self.filenameList.sort() | |
|
182 | 183 | for i in range(len(self.filenameList)-1): |
|
183 | 184 | filename = self.filenameList[i] |
|
184 | 185 | fp = h5py.File(filename,'r') |
|
185 | 186 | time_str = fp.get('Time/RadacTimeString') |
|
186 | 187 | |
|
187 | 188 | startDateTimeStr_File = time_str[0][0].split('.')[0] |
|
188 | 189 | junk = time.strptime(startDateTimeStr_File, '%Y-%m-%d %H:%M:%S') |
|
189 | 190 | startDateTime_File = datetime.datetime(junk.tm_year,junk.tm_mon,junk.tm_mday,junk.tm_hour, junk.tm_min, junk.tm_sec) |
|
190 | 191 | |
|
191 | 192 | endDateTimeStr_File = time_str[-1][-1].split('.')[0] |
|
192 | 193 | junk = time.strptime(endDateTimeStr_File, '%Y-%m-%d %H:%M:%S') |
|
193 | 194 | endDateTime_File = datetime.datetime(junk.tm_year,junk.tm_mon,junk.tm_mday,junk.tm_hour, junk.tm_min, junk.tm_sec) |
|
194 | 195 | |
|
195 | 196 | fp.close() |
|
196 | 197 | |
|
197 | 198 | if self.timezone == 'lt': |
|
198 | 199 | startDateTime_File = startDateTime_File - datetime.timedelta(minutes = 300) |
|
199 | 200 | endDateTime_File = endDateTime_File - datetime.timedelta(minutes = 300) |
|
200 | 201 | |
|
201 | 202 | if (endDateTime_File>=startDateTime_Reader and endDateTime_File<endDateTime_Reader): |
|
202 | 203 | #self.filenameList.remove(filename) |
|
203 | 204 | filter_filenameList.append(filename) |
|
204 | 205 | |
|
205 | 206 | filter_filenameList.sort() |
|
206 | 207 | self.filenameList = filter_filenameList |
|
207 | 208 | return 1 |
|
208 | 209 | |
|
209 | 210 | def __filterByGlob1(self, dirName): |
|
210 | 211 | filter_files = glob.glob1(dirName, '*.*%s'%self.extension_file) |
|
211 | 212 | filterDict = {} |
|
212 | 213 | filterDict.setdefault(dirName) |
|
213 | 214 | filterDict[dirName] = filter_files |
|
214 | 215 | return filterDict |
|
215 | 216 | |
|
216 | 217 | def __getFilenameList(self, fileListInKeys, dirList): |
|
217 | 218 | for value in fileListInKeys: |
|
218 | 219 | dirName = value.keys()[0] |
|
219 | 220 | for file in value[dirName]: |
|
220 | 221 | filename = os.path.join(dirName, file) |
|
221 | 222 | self.filenameList.append(filename) |
|
222 | 223 | |
|
223 | 224 | |
|
224 | 225 | def __selectDataForTimes(self): |
|
225 | 226 | #aun no esta implementado el filtro for tiempo |
|
226 | 227 | if not(self.status): |
|
227 | 228 | return None |
|
228 | 229 | |
|
229 | 230 | dirList = [os.path.join(self.path,x) for x in self.dirnameList] |
|
230 | 231 | |
|
231 | 232 | fileListInKeys = [self.__filterByGlob1(x) for x in dirList] |
|
232 | 233 | |
|
233 | 234 | self.__getFilenameList(fileListInKeys, dirList) |
|
234 | 235 | #filtro por tiempo |
|
235 | 236 | if not(self.all): |
|
236 | 237 | self.__getTimeFromData() |
|
237 | 238 | |
|
238 | 239 | |
|
239 | 240 | if len(self.filenameList)>0: |
|
240 | 241 | self.status = 1 |
|
241 | 242 | self.filenameList.sort() |
|
242 | 243 | else: |
|
243 | 244 | self.status = 0 |
|
244 | 245 | return None |
|
245 | 246 | |
|
246 | 247 | |
|
247 | 248 | def __searchFilesOffline(self, |
|
248 | 249 | path, |
|
249 | 250 | startDate, |
|
250 | 251 | endDate, |
|
251 | 252 | startTime=datetime.time(0,0,0), |
|
252 | 253 | endTime=datetime.time(23,59,59), |
|
253 | 254 | walk=True): |
|
254 | 255 | |
|
255 | 256 | self.__setParameters(path, startDate, endDate, startTime, endTime, walk) |
|
256 | 257 | |
|
257 | 258 | self.__checkPath() |
|
258 | 259 | |
|
259 | 260 | self.__findDataForDates() |
|
260 | 261 | |
|
261 | 262 | self.__selectDataForTimes() |
|
262 | 263 | |
|
263 | 264 | for i in range(len(self.filenameList)): |
|
264 | 265 | print "%s" %(self.filenameList[i]) |
|
265 | 266 | |
|
266 | 267 | return |
|
267 | 268 | |
|
268 | 269 | def __setNextFileOffline(self): |
|
269 | 270 | idFile = self.fileIndex |
|
270 | 271 | |
|
271 | 272 | while (True): |
|
272 | 273 | idFile += 1 |
|
273 | 274 | if not(idFile < len(self.filenameList)): |
|
274 | 275 | self.flagNoMoreFiles = 1 |
|
275 | 276 | print "No more Files" |
|
276 | 277 | return 0 |
|
277 | 278 | |
|
278 | 279 | filename = self.filenameList[idFile] |
|
279 | 280 | |
|
280 | 281 | amisrFilePointer = h5py.File(filename,'r') |
|
281 | 282 | |
|
282 | 283 | break |
|
283 | 284 | |
|
284 | 285 | self.flagIsNewFile = 1 |
|
285 | 286 | self.fileIndex = idFile |
|
286 | 287 | self.filename = filename |
|
287 | 288 | |
|
288 | 289 | self.amisrFilePointer = amisrFilePointer |
|
289 | 290 | |
|
290 | 291 | print "Setting the file: %s"%self.filename |
|
291 | 292 | |
|
292 | 293 | return 1 |
|
293 | 294 | |
|
294 | 295 | def __readHeader(self): |
|
295 | 296 | self.radacHeaderObj = RadacHeader(self.amisrFilePointer) |
|
296 | 297 | |
|
297 | 298 | #update values from experiment cfg file |
|
298 | 299 | if self.radacHeaderObj.nrecords == self.recordsperfile_fromfile: |
|
299 | 300 | self.radacHeaderObj.nrecords = self.recordsperfile_fromfile |
|
300 | 301 | self.radacHeaderObj.nbeams = self.nbeamcodes_fromfile |
|
301 | 302 | self.radacHeaderObj.npulses = self.npulsesint_fromfile |
|
302 | 303 | self.radacHeaderObj.nsamples = self.ngates_fromfile |
|
303 | 304 | |
|
304 | 305 | #looking index list for data |
|
305 | 306 | start_index = self.radacHeaderObj.pulseCount[0,:][0] |
|
306 | 307 | end_index = self.radacHeaderObj.npulses |
|
307 | 308 | range4data = range(start_index, end_index) |
|
308 | 309 | self.index4_schain_datablock = numpy.array(range4data) |
|
309 | 310 | |
|
310 | 311 | buffer_start_index = 0 |
|
311 | 312 | buffer_end_index = self.radacHeaderObj.pulseCount[0,:][0] |
|
312 | 313 | range4buffer = range(buffer_start_index, buffer_end_index) |
|
313 | 314 | self.index4_buffer = numpy.array(range4buffer) |
|
314 | 315 | |
|
315 | 316 | self.linear_pulseCount = numpy.array(range4data + range4buffer) |
|
316 | 317 | self.npulseByFrame = max(self.radacHeaderObj.pulseCount[0,:]+1) |
|
317 | 318 | |
|
318 | 319 | #get tuning frequency |
|
319 | 320 | frequency_h5file_dataset = self.amisrFilePointer.get('Rx'+'/TuningFrequency') |
|
320 | 321 | self.frequency_h5file = frequency_h5file_dataset[0,0] |
|
321 | 322 | |
|
322 | 323 | self.flagIsNewFile = 1 |
|
323 | 324 | |
|
324 | 325 | def __getBeamCode(self): |
|
325 | 326 | self.beamCodeDict = {} |
|
326 | 327 | self.beamRangeDict = {} |
|
327 | 328 | |
|
328 | 329 | beamCodeMap = self.amisrFilePointer.get('Setup/BeamcodeMap') |
|
329 | 330 | |
|
330 | 331 | for i in range(len(self.radacHeaderObj.beamCode[0,:])): |
|
331 | 332 | self.beamCodeDict.setdefault(i) |
|
332 | 333 | self.beamRangeDict.setdefault(i) |
|
333 | 334 | beamcodeValue = self.radacHeaderObj.beamCode[0,i] |
|
334 | 335 | beamcodeIndex = numpy.where(beamCodeMap[:,0] == beamcodeValue)[0][0] |
|
335 | 336 | x = beamCodeMap[beamcodeIndex][1] |
|
336 | 337 | y = beamCodeMap[beamcodeIndex][2] |
|
337 | 338 | z = beamCodeMap[beamcodeIndex][3] |
|
338 | 339 | self.beamCodeDict[i] = [beamcodeValue, x, y, z] |
|
339 | 340 | |
|
340 | 341 | just4record0 = self.radacHeaderObj.beamCodeByPulse[0,:] |
|
341 | 342 | |
|
342 | 343 | for i in range(len(self.beamCodeDict.values())): |
|
343 | 344 | xx = numpy.where(just4record0==self.beamCodeDict.values()[i][0]) |
|
344 | self.beamRangeDict[i] = xx[0] | |
|
345 | indexPulseByBeam = self.linear_pulseCount[xx[0]] | |
|
346 | self.beamRangeDict[i] = indexPulseByBeam | |
|
345 | 347 | |
|
346 | 348 | def __getExpParameters(self): |
|
347 | 349 | if not(self.status): |
|
348 | 350 | return None |
|
349 | 351 | |
|
350 | 352 | experimentCfgPath = os.path.join(self.path, self.dirnameList[0], 'Setup') |
|
351 | 353 | |
|
352 | 354 | expFinder = glob.glob1(experimentCfgPath,'*.exp') |
|
353 | 355 | if len(expFinder)== 0: |
|
354 | 356 | self.status = 0 |
|
355 | 357 | return None |
|
356 | 358 | |
|
357 | 359 | experimentFilename = os.path.join(experimentCfgPath,expFinder[0]) |
|
358 | 360 | |
|
359 | 361 | f = open(experimentFilename) |
|
360 | 362 | lines = f.readlines() |
|
361 | 363 | f.close() |
|
362 | 364 | |
|
363 | 365 | parmsList = ['npulsesint*','recordsperfile*','nbeamcodes*','ngates*'] |
|
364 | 366 | filterList = [fnmatch.filter(lines, x) for x in parmsList] |
|
365 | 367 | |
|
366 | 368 | |
|
367 | 369 | values = [re.sub(r'\D',"",x[0]) for x in filterList] |
|
368 | 370 | |
|
369 | 371 | self.npulsesint_fromfile = int(values[0]) |
|
370 | 372 | self.recordsperfile_fromfile = int(values[1]) |
|
371 | 373 | self.nbeamcodes_fromfile = int(values[2]) |
|
372 | 374 | self.ngates_fromfile = int(values[3]) |
|
373 | 375 | |
|
374 | 376 | tufileFinder = fnmatch.filter(lines, 'tufile=*') |
|
375 | 377 | tufile = tufileFinder[0].split('=')[1].split('\n')[0] |
|
376 | 378 | tufile = tufile.split('\r')[0] |
|
377 | 379 | tufilename = os.path.join(experimentCfgPath,tufile) |
|
378 | 380 | |
|
379 | 381 | f = open(tufilename) |
|
380 | 382 | lines = f.readlines() |
|
381 | 383 | f.close() |
|
382 | 384 | self.ippSeconds_fromfile = float(lines[1].split()[2])/1E6 |
|
383 | 385 | |
|
384 | 386 | |
|
385 | 387 | self.status = 1 |
|
386 | 388 | |
|
387 | 389 | def __setIdsAndArrays(self): |
|
388 | 390 | self.dataByFrame = self.__setDataByFrame() |
|
389 | 391 | self.beamCodeByFrame = self.amisrFilePointer.get('Raw11/Data/RadacHeader/BeamCode').value[0, :] |
|
390 | 392 | self.readRanges() |
|
391 | 393 | self.index_amisr_sample, self.index_amisr_buffer = self.radacHeaderObj.getIndexRangeToPulse(0) |
|
392 | 394 | self.radacTimeByFrame = numpy.zeros(self.radacHeaderObj.npulses) |
|
393 | 395 | self.buffer_radactime = numpy.zeros_like(self.radacTimeByFrame) |
|
394 | 396 | |
|
395 | 397 | |
|
396 | 398 | def __setNextFile(self): |
|
397 | 399 | |
|
398 | 400 | newFile = self.__setNextFileOffline() |
|
399 | 401 | |
|
400 | 402 | if not(newFile): |
|
401 | 403 | return 0 |
|
402 | 404 | |
|
403 | 405 | self.__readHeader() |
|
404 | 406 | |
|
405 | 407 | if self.__firstFile: |
|
406 | 408 | self.__setIdsAndArrays() |
|
407 | 409 | self.__firstFile = False |
|
408 | 410 | |
|
409 | 411 | self.__getBeamCode() |
|
410 | 412 | self.readDataBlock() |
|
411 | 413 | |
|
412 | 414 | |
|
413 | 415 | def setup(self,path=None, |
|
414 | 416 | startDate=None, |
|
415 | 417 | endDate=None, |
|
416 | 418 | startTime=datetime.time(0,0,0), |
|
417 | 419 | endTime=datetime.time(23,59,59), |
|
418 | 420 | walk=True, |
|
419 | 421 | timezone='ut', |
|
420 | 422 | all=0,): |
|
421 | 423 | |
|
422 | 424 | self.timezone = timezone |
|
423 | 425 | self.all = all |
|
424 | 426 | #Busqueda de archivos offline |
|
425 | 427 | self.__searchFilesOffline(path, startDate, endDate, startTime, endTime, walk) |
|
426 | 428 | |
|
427 | 429 | if not(self.filenameList): |
|
428 | 430 | print "There is no files into the folder: %s"%(path) |
|
429 | 431 | |
|
430 | 432 | sys.exit(-1) |
|
431 | 433 | |
|
432 | 434 | self.__getExpParameters() |
|
433 | 435 | |
|
434 | 436 | self.fileIndex = -1 |
|
435 | 437 | |
|
436 | 438 | self.__setNextFile() |
|
437 | 439 | |
|
438 | first_beamcode = self.radacHeaderObj.beamCodeByPulse[0,0] | |
|
439 | index = numpy.where(self.radacHeaderObj.beamCodeByPulse[0,:]!=first_beamcode)[0][0] | |
|
440 |
self.profileIndex_offset = self.radacHeaderObj.pulseCount[0,:][ |
|
|
440 | # first_beamcode = self.radacHeaderObj.beamCodeByPulse[0,0] | |
|
441 | # index = numpy.where(self.radacHeaderObj.beamCodeByPulse[0,:]!=first_beamcode)[0][0] | |
|
442 | self.profileIndex_offset = self.radacHeaderObj.pulseCount[0,:][0] | |
|
441 | 443 | self.profileIndex = self.profileIndex_offset |
|
442 | 444 | |
|
443 | 445 | def readRanges(self): |
|
444 | 446 | dataset = self.amisrFilePointer.get('Raw11/Data/Samples/Range') |
|
445 | #self.rangeFromFile = dataset.value | |
|
447 | ||
|
446 | 448 | self.rangeFromFile = numpy.reshape(dataset.value,(-1)) |
|
447 | return range | |
|
449 | return self.rangeFromFile | |
|
448 | 450 | |
|
449 | 451 | |
|
450 | 452 | def readRadacTime(self,idrecord, range1, range2): |
|
451 | 453 | self.radacTimeFromFile = self.radacHeaderObj.radacTime.value |
|
452 | 454 | |
|
453 | 455 | radacTimeByFrame = numpy.zeros((self.radacHeaderObj.npulses)) |
|
454 | 456 | #radacTimeByFrame = dataset[idrecord - 1,range1] |
|
455 | 457 | #radacTimeByFrame = dataset[idrecord,range2] |
|
456 | 458 | |
|
457 | 459 | return radacTimeByFrame |
|
458 | 460 | |
|
459 | 461 | def readBeamCode(self, idrecord, range1, range2): |
|
460 | 462 | dataset = self.amisrFilePointer.get('Raw11/Data/RadacHeader/BeamCode') |
|
461 | 463 | beamcodeByFrame = numpy.zeros((self.radacHeaderObj.npulses)) |
|
462 | 464 | self.beamCodesFromFile = dataset.value |
|
463 | 465 | |
|
464 | 466 | #beamcodeByFrame[range1] = dataset[idrecord - 1, range1] |
|
465 | 467 | #beamcodeByFrame[range2] = dataset[idrecord, range2] |
|
466 | 468 | beamcodeByFrame[range1] = dataset[idrecord, range1] |
|
467 | 469 | beamcodeByFrame[range2] = dataset[idrecord, range2] |
|
468 | 470 | |
|
469 | 471 | return beamcodeByFrame |
|
470 | 472 | |
|
471 | 473 | |
|
472 | 474 | def __setDataByFrame(self): |
|
473 | 475 | ndata = 2 # porque es complejo |
|
474 | 476 | dataByFrame = numpy.zeros((self.radacHeaderObj.npulses, self.radacHeaderObj.nsamples, ndata)) |
|
475 | 477 | return dataByFrame |
|
476 | 478 | |
|
477 | 479 | def __readDataSet(self): |
|
478 | 480 | dataset = self.amisrFilePointer.get('Raw11/Data/Samples/Data') |
|
479 | 481 | return dataset |
|
480 | 482 | |
|
481 | 483 | def __setDataBlock(self,): |
|
482 | 484 | real = self.dataByFrame[:,:,0] #asumo que 0 es real |
|
483 | 485 | imag = self.dataByFrame[:,:,1] #asumo que 1 es imaginario |
|
484 | 486 | datablock = real + imag*1j #armo el complejo |
|
485 | 487 | return datablock |
|
486 | 488 | |
|
487 | 489 | def readSamples_version1(self,idrecord): |
|
488 | 490 | #estas tres primeras lineas solo se deben ejecutar una vez |
|
489 | 491 | if self.flagIsNewFile: |
|
490 | 492 | #reading dataset |
|
491 | 493 | self.dataset = self.__readDataSet() |
|
492 | 494 | self.flagIsNewFile = 0 |
|
493 | 495 | |
|
494 | 496 | if idrecord == 0: |
|
495 | 497 | self.dataByFrame[self.index4_schain_datablock, : ,:] = self.dataset[0, self.index_amisr_sample,:,:] |
|
496 | 498 | self.radacTimeByFrame[self.index4_schain_datablock] = self.radacHeaderObj.radacTime[0, self.index_amisr_sample] |
|
497 | 499 | datablock = self.__setDataBlock() |
|
498 | 500 | |
|
499 | 501 | self.buffer = self.dataset[0, self.index_amisr_buffer,:,:] |
|
500 | 502 | self.buffer_radactime = self.radacHeaderObj.radacTime[0, self.index_amisr_buffer] |
|
501 | 503 | |
|
502 | 504 | return datablock |
|
503 | 505 | |
|
504 | 506 | self.dataByFrame[self.index4_buffer,:,:] = self.buffer.copy() |
|
505 | 507 | self.radacTimeByFrame[self.index4_buffer] = self.buffer_radactime.copy() |
|
506 | 508 | self.dataByFrame[self.index4_schain_datablock,:,:] = self.dataset[idrecord, self.index_amisr_sample,:,:] |
|
507 | 509 | self.radacTimeByFrame[self.index4_schain_datablock] = self.radacHeaderObj.radacTime[idrecord, self.index_amisr_sample] |
|
508 | 510 | datablock = self.__setDataBlock() |
|
509 | 511 | |
|
510 | 512 | self.buffer = self.dataset[idrecord, self.index_amisr_buffer, :, :] |
|
511 | 513 | self.buffer_radactime = self.radacHeaderObj.radacTime[idrecord, self.index_amisr_buffer] |
|
512 | 514 | |
|
513 | 515 | return datablock |
|
514 | 516 | |
|
515 | 517 | |
|
516 | 518 | def readSamples(self,idrecord): |
|
517 | 519 | if self.flagIsNewFile: |
|
518 | 520 | self.dataByFrame = self.__setDataByFrame() |
|
519 | 521 | self.beamCodeByFrame = self.amisrFilePointer.get('Raw11/Data/RadacHeader/BeamCode').value[idrecord, :] |
|
520 | 522 | |
|
521 | 523 | #reading ranges |
|
522 | 524 | self.readRanges() |
|
523 | 525 | #reading dataset |
|
524 | 526 | self.dataset = self.__readDataSet() |
|
525 | 527 | |
|
526 | 528 | self.flagIsNewFile = 0 |
|
527 | 529 | self.radacTimeByFrame = self.radacHeaderObj.radacTime.value[idrecord, :] |
|
528 | 530 | self.dataByFrame = self.dataset[idrecord, :, :, :] |
|
529 | 531 | datablock = self.__setDataBlock() |
|
530 | 532 | return datablock |
|
531 | 533 | |
|
532 | 534 | |
|
533 | 535 | def readDataBlock(self): |
|
534 | 536 | |
|
535 | 537 | self.datablock = self.readSamples_version1(self.idrecord_count) |
|
536 | 538 | #self.datablock = self.readSamples(self.idrecord_count) |
|
537 | 539 | #print 'record:', self.idrecord_count |
|
538 | 540 | |
|
539 | 541 | self.idrecord_count += 1 |
|
540 | 542 | self.profileIndex = 0 |
|
541 | 543 | |
|
542 | 544 | if self.idrecord_count >= self.radacHeaderObj.nrecords: |
|
543 | 545 | self.idrecord_count = 0 |
|
544 | 546 | self.flagIsNewFile = 1 |
|
545 | 547 | |
|
546 | 548 | def readNextBlock(self): |
|
547 | 549 | |
|
548 | 550 | self.readDataBlock() |
|
549 | 551 | |
|
550 | 552 | if self.flagIsNewFile: |
|
551 | 553 | self.__setNextFile() |
|
552 | 554 | pass |
|
553 | 555 | |
|
554 | 556 | def __hasNotDataInBuffer(self): |
|
555 | 557 | #self.radacHeaderObj.npulses debe ser otra variable para considerar el numero de pulsos a tomar en el primer y ultimo record |
|
556 | 558 | if self.profileIndex >= self.radacHeaderObj.npulses: |
|
557 | 559 | return 1 |
|
558 | 560 | return 0 |
|
559 | 561 | |
|
560 | 562 | def printUTC(self): |
|
561 | 563 | print self.dataOut.utctime |
|
562 | 564 | print '' |
|
563 | 565 | |
|
564 | 566 | def setObjProperties(self): |
|
565 | 567 | self.dataOut.heightList = self.rangeFromFile/1000.0 #km |
|
566 | 568 | self.dataOut.nProfiles = self.radacHeaderObj.npulses |
|
567 | 569 | self.dataOut.nRecords = self.radacHeaderObj.nrecords |
|
568 | 570 | self.dataOut.nBeams = self.radacHeaderObj.nbeams |
|
569 | 571 | self.dataOut.ippSeconds = self.ippSeconds_fromfile |
|
570 | 572 | self.dataOut.timeInterval = self.dataOut.ippSeconds * self.dataOut.nCohInt |
|
571 | 573 | self.dataOut.frequency = self.frequency_h5file |
|
572 | 574 | self.dataOut.npulseByFrame = self.npulseByFrame |
|
573 | 575 | self.dataOut.nBaud = None |
|
574 | 576 | self.dataOut.nCode = None |
|
575 | 577 | self.dataOut.code = None |
|
576 | 578 | |
|
577 | 579 | self.dataOut.beamCodeDict = self.beamCodeDict |
|
578 | 580 | self.dataOut.beamRangeDict = self.beamRangeDict |
|
579 | 581 | |
|
580 | 582 | if self.timezone == 'lt': |
|
581 | 583 | self.dataOut.timeZone = time.timezone / 60. #get the timezone in minutes |
|
582 | 584 | else: |
|
583 | 585 | self.dataOut.timeZone = 0 #by default time is UTC |
|
584 | 586 | |
|
585 | 587 | def getData(self): |
|
586 | 588 | |
|
587 | 589 | if self.flagNoMoreFiles: |
|
588 | 590 | self.dataOut.flagNoData = True |
|
589 | 591 | print 'Process finished' |
|
590 | 592 | return 0 |
|
591 | 593 | |
|
592 | 594 | if self.__hasNotDataInBuffer(): |
|
593 | 595 | self.readNextBlock() |
|
594 | 596 | |
|
595 | 597 | |
|
596 | 598 | if self.datablock == None: # setear esta condicion cuando no hayan datos por leers |
|
597 | 599 | self.dataOut.flagNoData = True |
|
598 | 600 | return 0 |
|
599 | 601 | |
|
600 | 602 | self.dataOut.data = numpy.reshape(self.datablock[self.profileIndex,:],(1,-1)) |
|
601 | 603 | |
|
602 | 604 | self.dataOut.utctime = self.radacTimeByFrame[self.profileIndex] |
|
603 | 605 | self.dataOut.profileIndex = self.profileIndex |
|
604 | 606 | self.dataOut.flagNoData = False |
|
605 | 607 | |
|
606 | 608 | self.profileIndex += 1 |
|
607 | 609 | |
|
608 | 610 | return self.dataOut.data |
|
609 | 611 | |
|
610 | 612 | |
|
611 | 613 | def run(self, **kwargs): |
|
612 | 614 | if not(self.isConfig): |
|
613 | 615 | self.setup(**kwargs) |
|
614 | 616 | self.setObjProperties() |
|
615 | 617 | self.isConfig = True |
|
616 | 618 | |
|
617 | 619 | self.getData() |
@@ -1,130 +1,136 | |||
|
1 | 1 | ''' |
|
2 | 2 | @author: Daniel Suarez |
|
3 | 3 | ''' |
|
4 | 4 | import numpy |
|
5 | 5 | from jroproc_base import ProcessingUnit, Operation |
|
6 | 6 | from model.data.jroamisr import AMISR |
|
7 | 7 | |
|
8 | 8 | class AMISRProc(ProcessingUnit): |
|
9 | 9 | def __init__(self): |
|
10 | 10 | ProcessingUnit.__init__(self) |
|
11 | 11 | self.objectDict = {} |
|
12 | 12 | self.dataOut = AMISR() |
|
13 | 13 | |
|
14 | 14 | def run(self): |
|
15 | 15 | if self.dataIn.type == 'AMISR': |
|
16 | 16 | self.dataOut.copy(self.dataIn) |
|
17 | 17 | |
|
18 | 18 | |
|
19 | 19 | class PrintInfo(Operation): |
|
20 | 20 | def __init__(self): |
|
21 | 21 | self.__isPrinted = False |
|
22 | 22 | |
|
23 | 23 | def run(self, dataOut): |
|
24 | 24 | |
|
25 | 25 | if not self.__isPrinted: |
|
26 | 26 | print 'Number of Records by File: %d'%dataOut.nRecords |
|
27 | 27 | print 'Number of Pulses: %d'%dataOut.nProfiles |
|
28 | 28 | print 'Number of Pulses by Frame: %d'%dataOut.npulseByFrame |
|
29 | 29 | print 'Number of Samples by Pulse: %d'%len(dataOut.heightList) |
|
30 | 30 | print 'Ipp Seconds: %f'%dataOut.ippSeconds |
|
31 | 31 | print 'Number of Beams: %d'%dataOut.nBeams |
|
32 | 32 | print 'BeamCodes:' |
|
33 | 33 | beamStrList = ['Beam %d -> Code=%d, azimuth=%2.2f, zenith=%2.2f, gain=%2.2f'%(k,v[0],v[1],v[2],v[3]) for k,v in dataOut.beamCodeDict.items()] |
|
34 | 34 | for b in beamStrList: |
|
35 | 35 | print b |
|
36 | 36 | self.__isPrinted = True |
|
37 | 37 | |
|
38 | 38 | return |
|
39 | 39 | |
|
40 | 40 | |
|
41 | 41 | class BeamSelector(Operation): |
|
42 | 42 | profileIndex = None |
|
43 | 43 | nProfiles = None |
|
44 | 44 | |
|
45 | 45 | def __init__(self): |
|
46 | 46 | |
|
47 | 47 | self.profileIndex = 0 |
|
48 | self.__isConfig = False | |
|
48 | 49 | |
|
49 | 50 | def incIndex(self): |
|
50 | 51 | self.profileIndex += 1 |
|
51 | 52 | |
|
52 | 53 | if self.profileIndex >= self.nProfiles: |
|
53 | 54 | self.profileIndex = 0 |
|
54 | 55 | |
|
55 | 56 | def isProfileInRange(self, minIndex, maxIndex): |
|
56 | 57 | |
|
57 | 58 | if self.profileIndex < minIndex: |
|
58 | 59 | return False |
|
59 | 60 | |
|
60 | 61 | if self.profileIndex > maxIndex: |
|
61 | 62 | return False |
|
62 | 63 | |
|
63 | 64 | return True |
|
64 | 65 | |
|
65 | 66 | def isProfileInList(self, profileList): |
|
66 | 67 | |
|
67 | 68 | if self.profileIndex not in profileList: |
|
68 | 69 | return False |
|
69 | 70 | |
|
70 | 71 | return True |
|
71 | 72 | |
|
72 | 73 | def run(self, dataOut, beam=None): |
|
73 | 74 | |
|
74 | 75 | dataOut.flagNoData = True |
|
76 | ||
|
77 | if not(self.__isConfig): | |
|
78 | ||
|
75 | 79 | self.nProfiles = dataOut.nProfiles |
|
80 | self.profileIndex = dataOut.profileIndex | |
|
81 | self.__isConfig = True | |
|
76 | 82 | |
|
77 | 83 | if beam != None: |
|
78 | 84 | if self.isProfileInList(dataOut.beamRangeDict[beam]): |
|
79 | 85 | beamInfo = dataOut.beamCodeDict[beam] |
|
80 | 86 | dataOut.azimuth = beamInfo[1] |
|
81 | 87 | dataOut.zenith = beamInfo[2] |
|
82 | 88 | dataOut.gain = beamInfo[3] |
|
83 | 89 | dataOut.flagNoData = False |
|
84 | 90 | |
|
85 | 91 | self.incIndex() |
|
86 | 92 | return 1 |
|
87 | 93 | |
|
88 | 94 | else: |
|
89 | 95 | raise ValueError, "BeamSelector needs beam value" |
|
90 | 96 | |
|
91 | 97 | return 0 |
|
92 | 98 | |
|
93 | 99 | class ProfileToChannels(Operation): |
|
94 | 100 | |
|
95 | 101 | def __init__(self): |
|
96 | 102 | self.__isConfig = False |
|
97 | 103 | self.__counter_chan = 0 |
|
98 | 104 | self.buffer = None |
|
99 | 105 | |
|
100 | 106 | |
|
101 | 107 | def run(self, dataOut): |
|
102 | 108 | |
|
103 | 109 | dataOut.flagNoData = True |
|
104 | 110 | |
|
105 | 111 | if not(self.__isConfig): |
|
106 | 112 | nchannels = len(dataOut.beamRangeDict.keys()) |
|
107 | 113 | nsamples = dataOut.nHeights |
|
108 | 114 | self.buffer = numpy.zeros((nchannels, nsamples), dtype = 'complex128') |
|
109 | 115 | self.__isConfig = True |
|
110 | 116 | |
|
111 | 117 | for i in range(self.buffer.shape[0]): |
|
112 | 118 | if dataOut.profileIndex in dataOut.beamRangeDict[i]: |
|
113 | 119 | self.buffer[i,:] = dataOut.data |
|
114 | 120 | if len(dataOut.beam.codeList) < self.buffer.shape[0]: |
|
115 | 121 | beamInfo = dataOut.beamCodeDict[i] |
|
116 | 122 | dataOut.beam.codeList.append(beamInfo[0]) |
|
117 | 123 | dataOut.beam.azimuthList.append(beamInfo[1]) |
|
118 | 124 | dataOut.beam.zenithList.append(beamInfo[2]) |
|
119 | 125 | break |
|
120 | 126 | |
|
121 | 127 | self.__counter_chan += 1 |
|
122 | 128 | |
|
123 | 129 | if self.__counter_chan >= self.buffer.shape[0]: |
|
124 | 130 | self.__counter_chan = 0 |
|
125 | 131 | dataOut.data = self.buffer.copy() |
|
126 | 132 | dataOut.channelList = range(self.buffer.shape[0]) |
|
127 | 133 | self.__isConfig = False |
|
128 | 134 | dataOut.flagNoData = False |
|
129 | 135 | pass |
|
130 | 136 | No newline at end of file |
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