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setup.py correction 7
setup.py correction 7
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setup.py
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Juan C. Espinoza
Add license, update setup and changelog
 r1329 # Copyright (c) 2012-2020 Jicamarca Radio Observatory
# All rights reserved.
#
# Distributed under the terms of the BSD 3-clause license.
"""schainpy is an open source library to read, write and process radar data
Miguel Valdez
Merge with branch schain_julia_drifts from rev. 803 to 995....
 r568
Juan C. Espinoza
Add license, update setup and changelog
 r1329 Signal Chain is a radar data processing library wich includes modules to read,
and write different files formats, besides modules to process and visualize the
data.
"""
Miguel Valdez
Merge with branch schain_julia_drifts from rev. 803 to 995....
 r568
José Chávez
pyqt4 verification
 r1102 import os
Miguel Valdez
setup.py is using setuptools since now
 r656 from setuptools import setup, Extension
José Chávez
setup actualizado para no necesitar numpy previamente
 r1026 from setuptools.command.build_ext import build_ext as _build_ext
Juan C. Espinoza
Update setup and README
 r1000 from schainpy import __version__
José Chávez
templates y setup actualizados
 r1078
Juan C. Espinoza
Add license, update setup and changelog
 r1329 DOCLINES = __doc__.split("\n")
José Chávez
setup actualizado para no necesitar numpy previamente
 r1026 class build_ext(_build_ext):
def finalize_options(self):
_build_ext.finalize_options(self)
# Prevent numpy from thinking it is still in its setup process:
__builtins__.__NUMPY_SETUP__ = False
import numpy
self.include_dirs.append(numpy.get_include())
Juan C. Espinoza
Update noise C extension to properly work with python 3
 r1286 setup(
name = "schainpy",
version = __version__,
Juan C. Espinoza
Add license, update setup and changelog
 r1329 description = DOCLINES[0],
long_description = "\n".join(DOCLINES[2:]),
jespinoza
HDFWriter create metadata if not given, update setup files
 r1339 url = "https://github.com/JRO-Peru/schainpy",
Juan C. Espinoza
Add license, update setup and changelog
 r1329 author = "Jicamarca Radio Observatory",
jespinoza
HDFWriter create metadata if not given, update setup files
 r1339 author_email = "jro-developers@jro.igp.gob.pe",
Juan C. Espinoza
Add license, update setup and changelog
 r1329 license="BSD-3-Clause",
classifiers=[
"Development Status :: 4 - Beta",
"Environment :: Console",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: BSD License",
"Operating System :: MacOS :: MacOS X",
"Operating System :: POSIX :: Linux",
"Programming Language :: Python :: 2",
"Programming Language :: Python :: 2.7",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.5",
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: 3.7",
jespinoza
Add python 3.8 compatibility with macOs
 r1342 "Programming Language :: Python :: 3.8",
Juan C. Espinoza
Add license, update setup and changelog
 r1329 "Topic :: Scientific/Engineering",
],
Juan C. Espinoza
Update noise C extension to properly work with python 3
 r1286 packages = {
'schainpy',
'schainpy.model',
'schainpy.model.data',
'schainpy.model.graphics',
'schainpy.model.io',
'schainpy.model.proc',
'schainpy.model.utils',
'schainpy.utils',
'schainpy.gui',
'schainpy.cli',
},
package_data = {'': ['schain.conf.template'],
'schainpy.files': ['*.oga']
},
include_package_data = False,
scripts = ['schainpy/gui/schainGUI'],
entry_points = {
'console_scripts': [
'schain = schainpy.cli.cli:main',
],
},
cmdclass = {'build_ext': build_ext},
ext_modules=[
Extension("schainpy.model.data._noise", ["schainc/_noise.c"]),
rflores
LP Faraday update
 r1542 Extension("schainpy.model.data._HS_algorithm", ["schainc/_HS_algorithm.c"]),
Juan C. Espinoza
Update noise C extension to properly work with python 3
 r1286 ],
setup_requires = ["numpy"],
install_requires = [
"scipy",
"h5py",
"matplotlib",
"pyzmq",
"fuzzywuzzy",
"click",
],
Juan C. Espinoza
Move schaincli to schainpy.cli
 r1113 )
rflores
Fortran Files addded
 r1568
rflores
bfield2 supports general path to call bfmodel
 r1573 main_path = os.getcwd()
rflores
add Ffiles 2
 r1602 child_path = '/schainf/Ffiles/bfmodel/'
rflores
bfield2 supports general path to call bfmodel
 r1573 #print("main_path: ", main_path)
my_str = ' '+"ppath = "+"\""+main_path+"\"\n"
my_str_2 = ' '+"cpath = "+"\""+child_path+"\""
#'''
rflores
add Ffiles 2
 r1602 with open('./schainf/Ffiles/get_path_1.f', 'r') as path1: data1 = path1.read()
with open('./schainf/Ffiles/get_path_2.f', 'r') as path2: data2 = path2.read()
with open('./schainf/Ffiles/get_path.f', 'w') as final: final.write(data1+my_str+my_str_2+data2)
rflores
bfield2 supports general path to call bfmodel
 r1573 #'''
rflores
Fortran Files addded
 r1568 from numpy.distutils.core import Extension, setup
rflores
MKFact No Hardcoded
 r1569 setup(name='schainpy',
ext_modules = [
Extension("schainpy.model.proc.mkfact_short_2020_2",
sources=[
rflores
add Ffiles 2
 r1602 "schainf/Ffiles/mkfact_short_2020_2.pyf",
"schainf/Ffiles/lmdif1.f",
"schainf/Ffiles/mkfact.f",
"schainf/Ffiles/r1mach.f",
"schainf/Ffiles/bfield2.f",
"schainf/Ffiles/get_path.f"],
extra_f77_compile_args=["-fallow-argument-mismatch"]),
rflores
add fitacf_guess.pyf
 r1610 Extension("schainpy.model.proc.fitacf_guess",
sources=[
rflores
add fitacf_guess.f
 r1612 "schainf/Ffiles/fitacf_guess.pyf",
"schainf/Ffiles/fitacf_guess.f",],
rflores
add fitacf_guess.pyf
 r1610 extra_f77_compile_args=["-fallow-argument-mismatch"]),
rflores
acf2 test
 r1578 Extension("schainpy.model.proc.fitacf_acf2",
sources = [
rflores
add Ffiles 2
 r1602 "schainf/Ffiles/fitacf_acf2.pyf",
"schainf/Ffiles/full_profile_profile.f",
"schainf/Ffiles/fitacf.f",
"schainf/Ffiles/r1mach.f",
"schainf/Ffiles/lmdif1.f",
"schainf/Ffiles/lagp.f",
"schainf/Ffiles/reader.c",
"schainf/Ffiles/cbesi.f",
"schainf/Ffiles/i1mach.f",
"schainf/Ffiles/zeta.f",
"schainf/Ffiles/qc25f.f",
"schainf/Ffiles/qwgtf.f",
"schainf/Ffiles/qcheb.f",
"schainf/Ffiles/sgtsl.f",
"schainf/Ffiles/qk15w.f",
"schainf/Ffiles/complex.c",
"schainf/Ffiles/cbinu.f",
"schainf/Ffiles/cseri.f",
"schainf/Ffiles/cwrsk.f",
"schainf/Ffiles/crati.f",
"schainf/Ffiles/casyi.f",
"schainf/Ffiles/cbuni.f",
"schainf/Ffiles/cuni2.f",
"schainf/Ffiles/gamln.f",
"schainf/Ffiles/cuchk.f",
"schainf/Ffiles/cbknu.f",
"schainf/Ffiles/cshch.f",
"schainf/Ffiles/ckscl.f",
"schainf/Ffiles/cuoik.f",
"schainf/Ffiles/cunik.f",
"schainf/Ffiles/cuni1.f",
"schainf/Ffiles/cairy.f",
"schainf/Ffiles/cmlri.f",
"schainf/Ffiles/cunhj.f",
"schainf/Ffiles/cacai.f",
"schainf/Ffiles/csisl.f",
"schainf/Ffiles/caxpy.f",
"schainf/Ffiles/cs1s2.f",
"schainf/Ffiles/scabs1.f",
"schainf/Ffiles/cdotu.f",
"schainf/Ffiles/rs.f",
"schainf/Ffiles/sppfa.f",
"schainf/Ffiles/sdot.f",
"schainf/Ffiles/tred2.f",
"schainf/Ffiles/tql2.f",
"schainf/Ffiles/sppdi.f",
"schainf/Ffiles/saxpy.f",
"schainf/Ffiles/sscal.f",
"schainf/Ffiles/pythag.f",
"schainf/Ffiles/tql1.f",
rflores
setup.py extension
 r1606 "schainf/Ffiles/get_path.f",
rflores
add Ffiles 2
 r1602 "schainf/Ffiles/tred1.f"],
rflores
setup.py correction
 r1603 extra_f77_compile_args=["-fallow-argument-mismatch"]),
rflores
add Ffiles 2
 r1602 Extension("schainpy.model.proc.fitacf_fit_short",
sources = [
"schainf/Ffiles/fitacf_fit_short.pyf",
"schainf/Ffiles/cairy.f",
"schainf/Ffiles/casyi.f",
"schainf/Ffiles/cbesi.f",
"schainf/Ffiles/cbinu.f",
"schainf/Ffiles/cbknu.f",
rflores
setup.py correction 2
 r1604 "schainf/Ffiles/cbuni.f",
rflores
add Ffiles 2
 r1602 "schainf/Ffiles/ckscl.f",
rflores
setup.py correction 7
 r1613 "schainf/Ffiles/crati.f",
rflores
add Ffiles 2
 r1602 "schainf/Ffiles/cmlri.f",
"schainf/Ffiles/cs1s2.f",
"schainf/Ffiles/cseri.f",
"schainf/Ffiles/cshch.f",
"schainf/Ffiles/cuchk.f",
"schainf/Ffiles/cunhj.f",
"schainf/Ffiles/cuni1.f",
"schainf/Ffiles/complex.c",
"schainf/Ffiles/cuni2.f",
"schainf/Ffiles/cunik.f",
"schainf/Ffiles/cuoik.f",
"schainf/Ffiles/cwrsk.f",
rflores
setup.py correction 3
 r1605 "schainf/Ffiles/fitacf_fit_short.f",
rflores
add Ffiles 2
 r1602 "schainf/Ffiles/gamln.f",
"schainf/Ffiles/i1mach.f",
"schainf/Ffiles/lmdif1.f",
"schainf/Ffiles/pythag.f",
"schainf/Ffiles/qc25f.f",
"schainf/Ffiles/qcheb.f",
"schainf/Ffiles/qk15w.f",
"schainf/Ffiles/qwgtf.f",
"schainf/Ffiles/r1mach.f",
rflores
setup.py correction 2
 r1604 "schainf/Ffiles/reader.c",
rflores
add Ffiles 2
 r1602 "schainf/Ffiles/rs.f",
"schainf/Ffiles/saxpy.f",
"schainf/Ffiles/sdot.f",
"schainf/Ffiles/sgtsl.f",
"schainf/Ffiles/sppdi.f",
"schainf/Ffiles/sppfa.f",
"schainf/Ffiles/sscal.f",
"schainf/Ffiles/tql1.f",
"schainf/Ffiles/tql2.f",
"schainf/Ffiles/tred1.f",
"schainf/Ffiles/tred2.f",
rflores
setup.py extension
 r1606 "schainf/Ffiles/get_path.f",
rflores
setup.py correction
 r1603 "schainf/Ffiles/zeta.f"],
rflores
setup.py extension
 r1606 extra_f77_compile_args=["-fallow-argument-mismatch"]),
Extension("schainpy.model.proc.full_profile_profile",
sources = [
rflores
setup.py correction 5
 r1608 "schainf/Ffiles/full_profile_profile.pyf",
rflores
setup.py extension
 r1606 "schainf/Ffiles/full_profile_profile.f",
"schainf/Ffiles/fitacf.f",
"schainf/Ffiles/r1mach.f",
"schainf/Ffiles/lmdif1.f",
"schainf/Ffiles/reader.c",
"schainf/Ffiles/cbesi.f",
rflores
add fitacf_guess.f
 r1612 "schainf/Ffiles/lagp.f",
rflores
setup.py extension
 r1606 "schainf/Ffiles/i1mach.f",
"schainf/Ffiles/zeta.f",
"schainf/Ffiles/qc25f.f",
"schainf/Ffiles/qwgtf.f",
"schainf/Ffiles/qcheb.f",
"schainf/Ffiles/sgtsl.f",
"schainf/Ffiles/qk15w.f",
"schainf/Ffiles/cbinu.f",
"schainf/Ffiles/complex.c",
"schainf/Ffiles/cseri.f",
"schainf/Ffiles/cwrsk.f",
"schainf/Ffiles/crati.f",
"schainf/Ffiles/casyi.f",
"schainf/Ffiles/cbuni.f",
"schainf/Ffiles/cuni2.f",
"schainf/Ffiles/gamln.f",
"schainf/Ffiles/cuchk.f",
"schainf/Ffiles/cbknu.f",
"schainf/Ffiles/cshch.f",
"schainf/Ffiles/ckscl.f",
"schainf/Ffiles/cuoik.f",
"schainf/Ffiles/cunik.f",
"schainf/Ffiles/cuni1.f",
"schainf/Ffiles/cairy.f",
"schainf/Ffiles/cmlri.f",
"schainf/Ffiles/cunhj.f",
"schainf/Ffiles/cacai.f",
"schainf/Ffiles/csisl.f",
"schainf/Ffiles/caxpy.f",
"schainf/Ffiles/cs1s2.f",
"schainf/Ffiles/scabs1.f",
"schainf/Ffiles/cdotu.f",
"schainf/Ffiles/rs.f",
"schainf/Ffiles/sppfa.f",
"schainf/Ffiles/sdot.f",
"schainf/Ffiles/tred2.f",
"schainf/Ffiles/tql2.f",
"schainf/Ffiles/sppdi.f",
"schainf/Ffiles/saxpy.f",
"schainf/Ffiles/sscal.f",
"schainf/Ffiles/pythag.f",
"schainf/Ffiles/tql1.f",
"schainf/Ffiles/get_path.f",
"schainf/Ffiles/tred1.f"],
rflores
setup.py correction
 r1603 extra_f77_compile_args=["-fallow-argument-mismatch"])
rflores
MKFact No Hardcoded
 r1569 ]
)
'''
rflores
Fortran Files addded
 r1568 setup(name='schainpy',
ext_modules = [
Extension("schainpy.model.proc.mkfact_short_2020_2",
sources=[
"schainf/mkfact/mkfact_short_2020_2.pyf",
"schainf/mkfact/lmdif1.f",
"schainf/mkfact/mkfact.f",
"schainf/mkfact/r1mach.f",
"schainf/mkfact/bfield2.f"]),
Extension("schainpy.model.proc.full_profile_profile",
sources=[
"schainf/full_profile/full_profile_profile.pyf",
"schainf/full_profile/full_profile_profile.f",
"schainf/full_profile/fitacf.f",
"schainf/full_profile/r1mach.f",
"schainf/full_profile/lmdif1.f",
"schainf/full_profile/lagp.f",
"schainf/full_profile/reader.c",
"schainf/full_profile/cbesi.f",
"schainf/full_profile/i1mach.f",
"schainf/full_profile/zeta.f",
"schainf/full_profile/qc25f.f",
"schainf/full_profile/qwgtf.f",
"schainf/full_profile/qcheb.f",
"schainf/full_profile/sgtsl.f",
"schainf/full_profile/qk15w.f",
"schainf/full_profile/complex.c",
"schainf/full_profile/cbinu.f",
"schainf/full_profile/cseri.f",
"schainf/full_profile/cwrsk.f",
"schainf/full_profile/crati.f",
"schainf/full_profile/casyi.f",
"schainf/full_profile/cbuni.f",
"schainf/full_profile/cuni2.f",
"schainf/full_profile/gamln.f",
"schainf/full_profile/cuchk.f",
"schainf/full_profile/cbknu.f",
"schainf/full_profile/cshch.f",
"schainf/full_profile/ckscl.f",
"schainf/full_profile/cuoik.f",
"schainf/full_profile/cunik.f",
"schainf/full_profile/cuni1.f",
"schainf/full_profile/cairy.f",
"schainf/full_profile/cmlri.f",
"schainf/full_profile/cunhj.f",
"schainf/full_profile/cacai.f",
"schainf/full_profile/csisl.f",
"schainf/full_profile/caxpy.f",
"schainf/full_profile/cs1s2.f",
"schainf/full_profile/scabs1.f",
"schainf/full_profile/cdotu.f",
"schainf/full_profile/rs.f",
"schainf/full_profile/sppfa.f",
"schainf/full_profile/sdot.f",
"schainf/full_profile/tred2.f",
"schainf/full_profile/tql2.f",
"schainf/full_profile/sppdi.f",
"schainf/full_profile/saxpy.f",
"schainf/full_profile/sscal.f",
"schainf/full_profile/pythag.f",
"schainf/full_profile/tql1.f",
"schainf/full_profile/tred1.f"]),
Extension("schainpy.model.proc.fitacf_acf2",
sources = [
"schainf/acf2/fitacf_acf2.pyf",
"schainf/acf2/full_profile_profile.f",
"schainf/acf2/fitacf.f",
"schainf/acf2/r1mach.f",
"schainf/acf2/lmdif1.f",
"schainf/acf2/lagp.f",
"schainf/acf2/reader.c",
"schainf/acf2/cbesi.f",
"schainf/acf2/i1mach.f",
"schainf/acf2/zeta.f",
"schainf/acf2/qc25f.f",
"schainf/acf2/qwgtf.f",
"schainf/acf2/qcheb.f",
"schainf/acf2/sgtsl.f",
"schainf/acf2/qk15w.f",
"schainf/acf2/complex.c",
"schainf/acf2/cbinu.f",
"schainf/acf2/cseri.f",
"schainf/acf2/cwrsk.f",
"schainf/acf2/crati.f",
"schainf/acf2/casyi.f",
"schainf/acf2/cbuni.f",
"schainf/acf2/cuni2.f",
"schainf/acf2/gamln.f",
"schainf/acf2/cuchk.f",
"schainf/acf2/cbknu.f",
"schainf/acf2/cshch.f",
"schainf/acf2/ckscl.f",
"schainf/acf2/cuoik.f",
"schainf/acf2/cunik.f",
"schainf/acf2/cuni1.f",
"schainf/acf2/cairy.f",
"schainf/acf2/cmlri.f",
"schainf/acf2/cunhj.f",
"schainf/acf2/cacai.f",
"schainf/acf2/csisl.f",
"schainf/acf2/caxpy.f",
"schainf/acf2/cs1s2.f",
"schainf/acf2/scabs1.f",
"schainf/acf2/cdotu.f",
"schainf/acf2/rs.f",
"schainf/acf2/sppfa.f",
"schainf/acf2/sdot.f",
"schainf/acf2/tred2.f",
"schainf/acf2/tql2.f",
"schainf/acf2/sppdi.f",
"schainf/acf2/saxpy.f",
"schainf/acf2/sscal.f",
"schainf/acf2/pythag.f",
"schainf/acf2/tql1.f",
"schainf/acf2/tred1.f"])
]
)
rflores
MKFact No Hardcoded
 r1569 '''