##// END OF EJS Templates
Guardado de datos azimuth y elevacion de amisr en hdf5, modificaciones a proc_spectra, proc_param y jrodata
Guardado de datos azimuth y elevacion de amisr en hdf5, modificaciones a proc_spectra, proc_param y jrodata

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r1386:029f5a79c540
r1387:8b6109d4fb6e
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jroplot_spectra.py
711 lines | 22.2 KiB | text/x-python | PythonLexer
Add update method to plots to pass data (no more changes in jrodata)
r1343 # Copyright (c) 2012-2020 Jicamarca Radio Observatory
# All rights reserved.
#
# Distributed under the terms of the BSD 3-clause license.
"""Classes to plot Spectra data
Miguel Valdez
Merge with branch schain_julia_drifts from rev. 803 to 995....
r568
Add update method to plots to pass data (no more changes in jrodata)
r1343 """
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285
Daniel Valdez
This is the new organization by packages and scripts for Signal Chain, this version contains new features and bugs fixed until August 2014
r487 import os
import numpy
Add update method to plots to pass data (no more changes in jrodata)
r1343 from schainpy.model.graphics.jroplot_base import Plot, plt, log
José Chávez
algunos cambios en roj
r953
Juan C. Valdez
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r858
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 class SpectraPlot(Plot):
'''
Plot for Spectra data
'''
Juan C. Valdez
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r858
Juan C. Espinoza
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r1285 CODE = 'spc'
colormap = 'jet'
plot_type = 'pcolor'
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r1343 buffering = False
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r1386 channelList = None
Juan C. Valdez
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r858
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 def setup(self):
self.nplots = len(self.data.channels)
self.ncols = int(numpy.sqrt(self.nplots) + 0.9)
self.nrows = int((1.0 * self.nplots / self.ncols) + 0.9)
Fix xmin & xmax in plots, fix SendToFTP
r1334 self.height = 2.6 * self.nrows
Se cambió los títulos en SpectraPlot y RTIPlot para que muestre los canales reales luego de la operación selectChannels
r1386
Juan C. Espinoza
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r1285 self.cb_label = 'dB'
if self.showprofile:
self.width = 4 * self.ncols
Daniel Valdez
This is the new organization by packages and scripts for Signal Chain, this version contains new features and bugs fixed until August 2014
r487 else:
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 self.width = 3.5 * self.ncols
self.plots_adjust.update({'wspace': 0.4, 'hspace':0.4, 'left': 0.1, 'right': 0.9, 'bottom': 0.08})
self.ylabel = 'Range [km]'
Add update method to plots to pass data (no more changes in jrodata)
r1343 def update(self, dataOut):
Se cambió los títulos en SpectraPlot y RTIPlot para que muestre los canales reales luego de la operación selectChannels
r1386 if self.channelList == None:
self.channelList = dataOut.channelList
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r1343 data = {}
meta = {}
spc = 10*numpy.log10(dataOut.data_spc/dataOut.normFactor)
data['spc'] = spc
data['rti'] = dataOut.getPower()
data['noise'] = 10*numpy.log10(dataOut.getNoise()/dataOut.normFactor)
meta['xrange'] = (dataOut.getFreqRange(1)/1000., dataOut.getAcfRange(1), dataOut.getVelRange(1))
if self.CODE == 'spc_moments':
data['moments'] = dataOut.moments
Se cambió los títulos en SpectraPlot y RTIPlot para que muestre los canales reales luego de la operación selectChannels
r1386
return data, meta
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 def plot(self):
if self.xaxis == "frequency":
x = self.data.xrange[0]
self.xlabel = "Frequency (kHz)"
elif self.xaxis == "time":
x = self.data.xrange[1]
self.xlabel = "Time (ms)"
ebocanegra
first commit
r965 else:
Juan C. Espinoza
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r1285 x = self.data.xrange[2]
self.xlabel = "Velocity (m/s)"
if self.CODE == 'spc_moments':
x = self.data.xrange[2]
self.xlabel = "Velocity (m/s)"
self.titles = []
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r1343 y = self.data.yrange
Juan C. Espinoza
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r1285 self.y = y
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r1343
data = self.data[-1]
z = data['spc']
Juan C. Espinoza
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r1285
for n, ax in enumerate(self.axes):
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r1343 noise = data['noise'][n]
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r1285 if self.CODE == 'spc_moments':
Fix bugs in SpectraCutPlot, GenericRTIPlot and saving when using throttle
r1359 mean = data['moments'][n, 1]
Juan C. Espinoza
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r1285 if ax.firsttime:
self.xmax = self.xmax if self.xmax else numpy.nanmax(x)
self.xmin = self.xmin if self.xmin else -self.xmax
self.zmin = self.zmin if self.zmin else numpy.nanmin(z)
self.zmax = self.zmax if self.zmax else numpy.nanmax(z)
ax.plt = ax.pcolormesh(x, y, z[n].T,
vmin=self.zmin,
vmax=self.zmax,
cmap=plt.get_cmap(self.colormap)
)
if self.showprofile:
ax.plt_profile = self.pf_axes[n].plot(
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r1343 data['rti'][n], y)[0]
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r1285 ax.plt_noise = self.pf_axes[n].plot(numpy.repeat(noise, len(y)), y,
color="k", linestyle="dashed", lw=1)[0]
if self.CODE == 'spc_moments':
ax.plt_mean = ax.plot(mean, y, color='k')[0]
else:
ax.plt.set_array(z[n].T.ravel())
if self.showprofile:
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r1343 ax.plt_profile.set_data(data['rti'][n], y)
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r1285 ax.plt_noise.set_data(numpy.repeat(noise, len(y)), y)
if self.CODE == 'spc_moments':
ax.plt_mean.set_data(mean, y)
Se cambió los títulos en SpectraPlot y RTIPlot para que muestre los canales reales luego de la operación selectChannels
r1386 self.titles.append('CH {}: {:3.2f}dB'.format(self.channelList[n], noise))
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r1285
class CrossSpectraPlot(Plot):
CODE = 'cspc'
colormap = 'jet'
plot_type = 'pcolor'
zmin_coh = None
zmax_coh = None
zmin_phase = None
zmax_phase = None
def setup(self):
self.ncols = 4
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r1343 self.nplots = len(self.data.pairs) * 2
self.nrows = int((1.0 * self.nplots / self.ncols) + 0.9)
Fix xmin & xmax in plots, fix SendToFTP
r1334 self.width = 3.1 * self.ncols
self.height = 2.6 * self.nrows
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 self.ylabel = 'Range [km]'
self.showprofile = False
Fix xmin & xmax in plots, fix SendToFTP
r1334 self.plots_adjust.update({'left': 0.08, 'right': 0.92, 'wspace': 0.5, 'hspace':0.4, 'top':0.95, 'bottom': 0.08})
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285
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r1343 def update(self, dataOut):
data = {}
meta = {}
spc = dataOut.data_spc
cspc = dataOut.data_cspc
meta['xrange'] = (dataOut.getFreqRange(1)/1000., dataOut.getAcfRange(1), dataOut.getVelRange(1))
meta['pairs'] = dataOut.pairsList
tmp = []
for n, pair in enumerate(meta['pairs']):
out = cspc[n] / numpy.sqrt(spc[pair[0]] * spc[pair[1]])
coh = numpy.abs(out)
phase = numpy.arctan2(out.imag, out.real) * 180 / numpy.pi
tmp.append(coh)
tmp.append(phase)
data['cspc'] = numpy.array(tmp)
Se cambió los títulos en SpectraPlot y RTIPlot para que muestre los canales reales luego de la operación selectChannels
r1386 return data, meta
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 def plot(self):
if self.xaxis == "frequency":
x = self.data.xrange[0]
self.xlabel = "Frequency (kHz)"
elif self.xaxis == "time":
x = self.data.xrange[1]
self.xlabel = "Time (ms)"
Miguel Valdez
jroplot_spectra: xaxis can be frequency, velocity or time.
r777 else:
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 x = self.data.xrange[2]
self.xlabel = "Velocity (m/s)"
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r1386
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 self.titles = []
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r1343 y = self.data.yrange
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 self.y = y
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r1343 data = self.data[-1]
cspc = data['cspc']
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285
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r1343 for n in range(len(self.data.pairs)):
pair = self.data.pairs[n]
coh = cspc[n*2]
phase = cspc[n*2+1]
ax = self.axes[2 * n]
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 if ax.firsttime:
ax.plt = ax.pcolormesh(x, y, coh.T,
vmin=0,
vmax=1,
cmap=plt.get_cmap(self.colormap_coh)
)
else:
ax.plt.set_array(coh.T.ravel())
self.titles.append(
'Coherence Ch{} * Ch{}'.format(pair[0], pair[1]))
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r1386
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r1343 ax = self.axes[2 * n + 1]
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 if ax.firsttime:
ax.plt = ax.pcolormesh(x, y, phase.T,
vmin=-180,
vmax=180,
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r1386 cmap=plt.get_cmap(self.colormap_phase)
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 )
else:
ax.plt.set_array(phase.T.ravel())
self.titles.append('Phase CH{} * CH{}'.format(pair[0], pair[1]))
class RTIPlot(Plot):
'''
Plot for RTI data
'''
CODE = 'rti'
colormap = 'jet'
plot_type = 'pcolorbuffer'
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r1386 titles = None
channelList = None
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r1285
def setup(self):
self.xaxis = 'time'
self.ncols = 1
self.nrows = len(self.data.channels)
self.nplots = len(self.data.channels)
self.ylabel = 'Range [km]'
self.xlabel = 'Time'
self.cb_label = 'dB'
self.plots_adjust.update({'hspace':0.8, 'left': 0.1, 'bottom': 0.08, 'right':0.95})
self.titles = ['{} Channel {}'.format(
Se cambió los títulos en SpectraPlot y RTIPlot para que muestre los canales reales luego de la operación selectChannels
r1386 self.CODE.upper(), x) for x in range(self.nplots)]
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285
Add update method to plots to pass data (no more changes in jrodata)
r1343 def update(self, dataOut):
Se cambió los títulos en SpectraPlot y RTIPlot para que muestre los canales reales luego de la operación selectChannels
r1386 if self.channelList == None:
self.channelList = dataOut.channelList
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r1343 data = {}
meta = {}
data['rti'] = dataOut.getPower()
data['noise'] = 10*numpy.log10(dataOut.getNoise()/dataOut.normFactor)
return data, meta
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 def plot(self):
self.x = self.data.times
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r1343 self.y = self.data.yrange
Juan C. Espinoza
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r1285 self.z = self.data[self.CODE]
self.z = numpy.ma.masked_invalid(self.z)
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r1386 if self.channelList != None:
self.titles = ['{} Channel {}'.format(
self.CODE.upper(), x) for x in self.channelList]
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285
if self.decimation is None:
x, y, z = self.fill_gaps(self.x, self.y, self.z)
ebocanegra
first commit
r965 else:
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 x, y, z = self.fill_gaps(*self.decimate())
for n, ax in enumerate(self.axes):
self.zmin = self.zmin if self.zmin else numpy.min(self.z)
self.zmax = self.zmax if self.zmax else numpy.max(self.z)
Add update method to plots to pass data (no more changes in jrodata)
r1343 data = self.data[-1]
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 if ax.firsttime:
ax.plt = ax.pcolormesh(x, y, z[n].T,
vmin=self.zmin,
vmax=self.zmax,
cmap=plt.get_cmap(self.colormap)
)
if self.showprofile:
ax.plot_profile = self.pf_axes[n].plot(
Add update method to plots to pass data (no more changes in jrodata)
r1343 data['rti'][n], self.y)[0]
ax.plot_noise = self.pf_axes[n].plot(numpy.repeat(data['noise'][n], len(self.y)), self.y,
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 color="k", linestyle="dashed", lw=1)[0]
else:
ax.collections.remove(ax.collections[0])
ax.plt = ax.pcolormesh(x, y, z[n].T,
vmin=self.zmin,
vmax=self.zmax,
cmap=plt.get_cmap(self.colormap)
)
if self.showprofile:
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r1343 ax.plot_profile.set_data(data['rti'][n], self.y)
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 ax.plot_noise.set_data(numpy.repeat(
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r1343 data['noise'][n], len(self.y)), self.y)
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285
class CoherencePlot(RTIPlot):
'''
Plot for Coherence data
'''
CODE = 'coh'
def setup(self):
self.xaxis = 'time'
self.ncols = 1
self.nrows = len(self.data.pairs)
self.nplots = len(self.data.pairs)
self.ylabel = 'Range [km]'
self.xlabel = 'Time'
self.plots_adjust.update({'hspace':0.6, 'left': 0.1, 'bottom': 0.1,'right':0.95})
if self.CODE == 'coh':
self.cb_label = ''
self.titles = [
'Coherence Map Ch{} * Ch{}'.format(x[0], x[1]) for x in self.data.pairs]
Miguel Valdez
r825 else:
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 self.cb_label = 'Degrees'
self.titles = [
'Phase Map Ch{} * Ch{}'.format(x[0], x[1]) for x in self.data.pairs]
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Add update method to plots to pass data (no more changes in jrodata)
r1343 def update(self, dataOut):
data = {}
meta = {}
data['coh'] = dataOut.getCoherence()
meta['pairs'] = dataOut.pairsList
return data, meta
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 class PhasePlot(CoherencePlot):
'''
Plot for Phase map data
'''
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 CODE = 'phase'
colormap = 'seismic'
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Add update method to plots to pass data (no more changes in jrodata)
r1343 def update(self, dataOut):
data = {}
meta = {}
data['phase'] = dataOut.getCoherence(phase=True)
meta['pairs'] = dataOut.pairsList
return data, meta
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 class NoisePlot(Plot):
'''
Se cambió los títulos en SpectraPlot y RTIPlot para que muestre los canales reales luego de la operación selectChannels
r1386 Plot for noise
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 '''
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 CODE = 'noise'
plot_type = 'scatterbuffer'
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 def setup(self):
self.xaxis = 'time'
self.ncols = 1
self.nrows = 1
self.nplots = 1
self.ylabel = 'Intensity [dB]'
Juan C. Espinoza
Update plots modules
r1308 self.xlabel = 'Time'
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 self.titles = ['Noise']
self.colorbar = False
Add update method to plots to pass data (no more changes in jrodata)
r1343 self.plots_adjust.update({'right': 0.85 })
def update(self, dataOut):
data = {}
meta = {}
data['noise'] = 10*numpy.log10(dataOut.getNoise()/dataOut.normFactor).reshape(dataOut.nChannels, 1)
meta['yrange'] = numpy.array([])
return data, meta
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 def plot(self):
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 x = self.data.times
xmin = self.data.min_time
xmax = xmin + self.xrange * 60 * 60
Add update method to plots to pass data (no more changes in jrodata)
r1343 Y = self.data['noise']
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 if self.axes[0].firsttime:
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r1343 self.ymin = numpy.nanmin(Y) - 5
self.ymax = numpy.nanmax(Y) + 5
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 for ch in self.data.channels:
y = Y[ch]
self.axes[0].plot(x, y, lw=1, label='Ch{}'.format(ch))
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r1343 plt.legend(bbox_to_anchor=(1.18, 1.0))
Julio Valdez
-Parameters Plot corrected...
r832 else:
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 for ch in self.data.channels:
y = Y[ch]
self.axes[0].lines[ch].set_data(x, y)
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Se cambió los títulos en SpectraPlot y RTIPlot para que muestre los canales reales luego de la operación selectChannels
r1386
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 class PowerProfilePlot(Plot):
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
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r1343 CODE = 'pow_profile'
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 plot_type = 'scatter'
Juan C. Valdez
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r858
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 def setup(self):
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 self.ncols = 1
self.nrows = 1
self.nplots = 1
self.height = 4
self.width = 3
self.ylabel = 'Range [km]'
self.xlabel = 'Intensity [dB]'
self.titles = ['Power Profile']
self.colorbar = False
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Add update method to plots to pass data (no more changes in jrodata)
r1343 def update(self, dataOut):
data = {}
meta = {}
data[self.CODE] = dataOut.getPower()
return data, meta
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 def plot(self):
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Add update method to plots to pass data (no more changes in jrodata)
r1343 y = self.data.yrange
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 self.y = y
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Add update method to plots to pass data (no more changes in jrodata)
r1343 x = self.data[-1][self.CODE]
Se cambió los títulos en SpectraPlot y RTIPlot para que muestre los canales reales luego de la operación selectChannels
r1386
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 if self.xmin is None: self.xmin = numpy.nanmin(x)*0.9
if self.xmax is None: self.xmax = numpy.nanmax(x)*1.1
Se cambió los títulos en SpectraPlot y RTIPlot para que muestre los canales reales luego de la operación selectChannels
r1386
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 if self.axes[0].firsttime:
for ch in self.data.channels:
self.axes[0].plot(x[ch], y, lw=1, label='Ch{}'.format(ch))
plt.legend()
Miguel Valdez
jroplot_spectra: xaxis can be frequency, velocity or time.
r777 else:
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 for ch in self.data.channels:
self.axes[0].lines[ch].set_data(x[ch], y)
class SpectraCutPlot(Plot):
CODE = 'spc_cut'
plot_type = 'scatter'
buffering = False
def setup(self):
self.nplots = len(self.data.channels)
self.ncols = int(numpy.sqrt(self.nplots) + 0.9)
self.nrows = int((1.0 * self.nplots / self.ncols) + 0.9)
self.width = 3.4 * self.ncols + 1.5
self.height = 3 * self.nrows
self.ylabel = 'Power [dB]'
self.colorbar = False
self.plots_adjust.update({'left':0.1, 'hspace':0.3, 'right': 0.75, 'bottom':0.08})
Add update method to plots to pass data (no more changes in jrodata)
r1343 def update(self, dataOut):
data = {}
meta = {}
spc = 10*numpy.log10(dataOut.data_spc/dataOut.normFactor)
data['spc'] = spc
meta['xrange'] = (dataOut.getFreqRange(1)/1000., dataOut.getAcfRange(1), dataOut.getVelRange(1))
return data, meta
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 def plot(self):
if self.xaxis == "frequency":
x = self.data.xrange[0][1:]
self.xlabel = "Frequency (kHz)"
elif self.xaxis == "time":
x = self.data.xrange[1]
self.xlabel = "Time (ms)"
Daniel Valdez
This is the new organization by packages and scripts for Signal Chain, this version contains new features and bugs fixed until August 2014
r487 else:
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 x = self.data.xrange[2]
self.xlabel = "Velocity (m/s)"
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 self.titles = []
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Add update method to plots to pass data (no more changes in jrodata)
r1343 y = self.data.yrange
z = self.data[-1]['spc']
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 if self.height_index:
index = numpy.array(self.height_index)
Daniel Valdez
This is the new organization by packages and scripts for Signal Chain, this version contains new features and bugs fixed until August 2014
r487 else:
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 index = numpy.arange(0, len(y), int((len(y))/9))
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 for n, ax in enumerate(self.axes):
if ax.firsttime:
self.xmax = self.xmax if self.xmax else numpy.nanmax(x)
self.xmin = self.xmin if self.xmin else -self.xmax
self.ymin = self.ymin if self.ymin else numpy.nanmin(z)
self.ymax = self.ymax if self.ymax else numpy.nanmax(z)
ax.plt = ax.plot(x, z[n, :, index].T)
labels = ['Range = {:2.1f}km'.format(y[i]) for i in index]
self.figures[0].legend(ax.plt, labels, loc='center right')
else:
for i, line in enumerate(ax.plt):
Fix bugs in SpectraCutPlot, GenericRTIPlot and saving when using throttle
r1359 line.set_data(x, z[n, :, index[i]])
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 self.titles.append('CH {}'.format(n))
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
George Yong
Multiprocessing for Spectra (all operation) working
r1171
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 class BeaconPhase(Plot):
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 __isConfig = None
__nsubplots = None
PREFIX = 'beacon_phase'
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
George Yong
Multiprocessing for writing Units(Spectral, Voltage and Parameters)
r1179 def __init__(self):
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 Plot.__init__(self)
Daniel Valdez
Fixing PNG File Storage...
r494 self.timerange = 24*60*60
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 self.isConfig = False
Daniel Valdez
Fixing PNG File Storage...
r494 self.__nsubplots = 1
self.counter_imagwr = 0
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 self.WIDTH = 800
self.HEIGHT = 400
Daniel Valdez
Fixing PNG File Storage...
r494 self.WIDTHPROF = 120
self.HEIGHTPROF = 0
self.xdata = None
self.ydata = None
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
A new SendToServer Unit has been created to upload files to a remote server....
r573 self.PLOT_CODE = BEACON_CODE
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 self.FTP_WEI = None
self.EXP_CODE = None
self.SUB_EXP_CODE = None
self.PLOT_POS = None
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 self.filename_phase = None
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 self.figfile = None
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
Merge with branch schain_julia_drifts from rev. 803 to 995....
r568 self.xmin = None
self.xmax = None
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 def getSubplots(self):
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 ncol = 1
nrow = 1
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 return nrow, ncol
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 def setup(self, id, nplots, wintitle, showprofile=True, show=True):
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 self.__showprofile = showprofile
self.nplots = nplots
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 ncolspan = 7
colspan = 6
self.__nsubplots = 2
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 self.createFigure(id = id,
wintitle = wintitle,
widthplot = self.WIDTH+self.WIDTHPROF,
heightplot = self.HEIGHT+self.HEIGHTPROF,
show=show)
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 nrow, ncol = self.getSubplots()
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 self.addAxes(nrow, ncol*ncolspan, 0, 0, colspan, 1)
def save_phase(self, filename_phase):
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858 f = open(filename_phase,'w+')
Daniel Valdez
Fixing PNG File Storage...
r494 f.write('\n\n')
f.write('JICAMARCA RADIO OBSERVATORY - Beacon Phase \n')
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858 f.write('DD MM YYYY HH MM SS pair(2,0) pair(2,1) pair(2,3) pair(2,4)\n\n' )
Daniel Valdez
Fixing PNG File Storage...
r494 f.close()
def save_data(self, filename_phase, data, data_datetime):
f=open(filename_phase,'a')
timetuple_data = data_datetime.timetuple()
day = str(timetuple_data.tm_mday)
month = str(timetuple_data.tm_mon)
year = str(timetuple_data.tm_year)
hour = str(timetuple_data.tm_hour)
minute = str(timetuple_data.tm_min)
second = str(timetuple_data.tm_sec)
f.write(day+' '+month+' '+year+' '+hour+' '+minute+' '+second+' '+str(data[0])+' '+str(data[1])+' '+str(data[2])+' '+str(data[3])+'\n')
f.close()
Juan C. Espinoza
Update and fix plot modules #TODO: correlation & spectraheis
r1285 def plot(self):
log.warning('TODO: Not yet implemented...')
Daniel Valdez
Fixing PNG File Storage...
r494
def run(self, dataOut, id, wintitle="", pairsList=None, showprofile='True',
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 xmin=None, xmax=None, ymin=None, ymax=None, hmin=None, hmax=None,
Daniel Valdez
Fixing PNG File Storage...
r494 timerange=None,
Miguel Valdez
Merge with branch schain_julia_drifts from rev. 803 to 995....
r568 save=False, figpath='./', figfile=None, show=True, ftp=False, wr_period=1,
Daniel Valdez
Fixing PNG File Storage...
r494 server=None, folder=None, username=None, password=None,
ftp_wei=0, exp_code=0, sub_exp_code=0, plot_pos=0):
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Se cambió los títulos en SpectraPlot y RTIPlot para que muestre los canales reales luego de la operación selectChannels
r1386 if dataOut.flagNoData:
George Yong
Multiprocessing for Spectra (all operation) working
r1171 return dataOut
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 if not isTimeInHourRange(dataOut.datatime, xmin, xmax):
return
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 if pairsList == None:
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 pairsIndexList = dataOut.pairsIndexList[:10]
Daniel Valdez
Fixing PNG File Storage...
r494 else:
pairsIndexList = []
for pair in pairsList:
if pair not in dataOut.pairsList:
George Yong
Python 2to3, Spectra (all operations) working
r1167 raise ValueError("Pair %s is not in dataOut.pairsList" %(pair))
Daniel Valdez
Fixing PNG File Storage...
r494 pairsIndexList.append(dataOut.pairsList.index(pair))
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 if pairsIndexList == []:
return
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Juan C. Espinoza
Fix SpectralMoments Plot
r1207 # if len(pairsIndexList) > 4:
# pairsIndexList = pairsIndexList[0:4]
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760
hmin_index = None
hmax_index = None
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 if hmin != None and hmax != None:
indexes = numpy.arange(dataOut.nHeights)
hmin_list = indexes[dataOut.heightList >= hmin]
hmax_list = indexes[dataOut.heightList <= hmax]
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 if hmin_list.any():
hmin_index = hmin_list[0]
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 if hmax_list.any():
hmax_index = hmax_list[-1]+1
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 x = dataOut.getTimeRange()
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 thisDatetime = dataOut.datatime
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 title = wintitle + " Signal Phase" # : %s" %(thisDatetime.strftime("%d-%b-%Y"))
Daniel Valdez
Fixing PNG File Storage...
r494 xlabel = "Local Time"
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 ylabel = "Phase (degrees)"
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 update_figfile = False
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 nplots = len(pairsIndexList)
#phase = numpy.zeros((len(pairsIndexList),len(dataOut.beacon_heiIndexList)))
phase_beacon = numpy.zeros(len(pairsIndexList))
for i in range(nplots):
pair = dataOut.pairsList[pairsIndexList[i]]
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 ccf = numpy.average(dataOut.data_cspc[pairsIndexList[i], :, hmin_index:hmax_index], axis=0)
powa = numpy.average(dataOut.data_spc[pair[0], :, hmin_index:hmax_index], axis=0)
powb = numpy.average(dataOut.data_spc[pair[1], :, hmin_index:hmax_index], axis=0)
Daniel Valdez
Fixing PNG File Storage...
r494 avgcoherenceComplex = ccf/numpy.sqrt(powa*powb)
phase = numpy.arctan2(avgcoherenceComplex.imag, avgcoherenceComplex.real)*180/numpy.pi
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 if dataOut.beacon_heiIndexList:
phase_beacon[i] = numpy.average(phase[dataOut.beacon_heiIndexList])
else:
phase_beacon[i] = numpy.average(phase)
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 if not self.isConfig:
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 nplots = len(pairsIndexList)
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 self.setup(id=id,
nplots=nplots,
wintitle=wintitle,
showprofile=showprofile,
show=show)
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
Merge with branch schain_julia_drifts from rev. 803 to 995....
r568 if timerange != None:
self.timerange = timerange
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
Merge with branch schain_julia_drifts from rev. 803 to 995....
r568 self.xmin, self.xmax = self.getTimeLim(x, xmin, xmax, timerange)
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 if ymin == None: ymin = 0
if ymax == None: ymax = 360
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 self.FTP_WEI = ftp_wei
self.EXP_CODE = exp_code
self.SUB_EXP_CODE = sub_exp_code
self.PLOT_POS = plot_pos
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 self.name = thisDatetime.strftime("%Y%m%d_%H%M%S")
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 self.isConfig = True
Daniel Valdez
Fixing PNG File Storage...
r494 self.figfile = figfile
self.xdata = numpy.array([])
self.ydata = numpy.array([])
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 update_figfile = True
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 #open file beacon phase
path = '%s%03d' %(self.PREFIX, self.id)
beacon_file = os.path.join(path,'%s.txt'%self.name)
self.filename_phase = os.path.join(figpath,beacon_file)
#self.save_phase(self.filename_phase)
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 #store data beacon phase
#self.save_data(self.filename_phase, phase_beacon, thisDatetime)
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 self.setWinTitle(title)
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 title = "Phase Plot %s" %(thisDatetime.strftime("%Y/%m/%d %H:%M:%S"))
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 legendlabels = ["Pair (%d,%d)"%(pair[0], pair[1]) for pair in dataOut.pairsList]
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 axes = self.axesList[0]
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 self.xdata = numpy.hstack((self.xdata, x[0:1]))
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 if len(self.ydata)==0:
self.ydata = phase_beacon.reshape(-1,1)
else:
self.ydata = numpy.hstack((self.ydata, phase_beacon.reshape(-1,1)))
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 axes.pmultilineyaxis(x=self.xdata, y=self.ydata,
Miguel Valdez
Merge with branch schain_julia_drifts from rev. 803 to 995....
r568 xmin=self.xmin, xmax=self.xmax, ymin=ymin, ymax=ymax,
Daniel Valdez
Fixing PNG File Storage...
r494 xlabel=xlabel, ylabel=ylabel, title=title, legendlabels=legendlabels, marker='x', markersize=8, linestyle="solid",
XAxisAsTime=True, grid='both'
)
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Daniel Valdez
Fixing PNG File Storage...
r494 self.draw()
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 if dataOut.ltctime >= self.xmax:
Daniel Valdez
Fixing PNG File Storage...
r494 self.counter_imagwr = wr_period
Miguel Valdez
Bug fixed plotting RTI, CoherenceMap, Noise and BeaconPhase: It were not working properly when xmin and xmax were defined and more than one day selected.
r760 self.isConfig = False
update_figfile = True
Juan C. Valdez
Add colormap parameter for spectra and RTI, create jro colormap, plot masked arrays
r858
Miguel Valdez
A new SendToServer Unit has been created to upload files to a remote server....
r573 self.save(figpath=figpath,
figfile=figfile,
save=save,
ftp=ftp,
wr_period=wr_period,
thisDatetime=thisDatetime,
George Yong
Multiprocessing for Spectra (all operation) working
r1171 update_figfile=update_figfile)
Se cambió los títulos en SpectraPlot y RTIPlot para que muestre los canales reales luego de la operación selectChannels
r1386 return dataOut