''' Created on Set 10, 2017 @author: Juan C. Espinoza ''' import os import sys import time import glob import datetime import numpy from schainpy.model.proc.jroproc_base import ProcessingUnit from schainpy.model.data.jrodata import Parameters from schainpy.model.io.jroIO_base import JRODataReader, isNumber from schainpy.utils import log FILE_HEADER_STRUCTURE = numpy.dtype([ ('year', 'f'), ('doy', 'f'), ('nint', 'f'), ('navg', 'f'), ('fh', 'f'), ('dh', 'f'), ('nheights', 'f'), ('ipp', 'f') ]) REC_HEADER_STRUCTURE = numpy.dtype([ ('magic', 'f'), ('hours', 'f'), ('interval', 'f'), ('h0', 'f'), ('nheights', 'f'), ('snr1', 'f'), ('snr2', 'f'), ('snr', 'f'), ]) DATA_STRUCTURE = numpy.dtype([ ('range', ' dateFile) or (endDate < dateFile): continue self.fileList.append(thisFile) self.dateFileList.append(dateFile) return def setNextFile(self): file_id = self.fileIndex if file_id == len(self.fileList): log.success('No more files in the folder', self.name) self.flagNoMoreFiles = 1 return 0 log.success('Opening {}'.format(self.fileList[file_id]), self.name) filename = os.path.join(self.path, self.fileList[file_id]) dirname, name = os.path.split(filename) self.siteFile = name.split('.')[0] if self.filename is not None: self.fp.close() self.filename = filename self.fp = open(self.filename, 'rb') self.header_file = numpy.fromfile(self.fp, FILE_HEADER_STRUCTURE, 1) yy = self.header_file['year'] - 1900 * (self.header_file['year'] > 3000) self.year = int(yy + 1900 * (yy < 1000)) self.doy = int(self.header_file['doy']) self.dH = round(self.header_file['dh'], 2) self.ipp = round(self.header_file['ipp'], 2) self.sizeOfFile = os.path.getsize(self.filename) self.counter_records = 0 self.flagIsNewFile = 0 self.fileIndex += 1 return 1 def readNextBlock(self): while True: if not self.readBlock(): self.flagIsNewFile = 1 if not self.setNextFile(): return 0 if (self.datatime < datetime.datetime.combine(self.startDate, self.startTime)) or \ (self.datatime > datetime.datetime.combine(self.endDate, self.endTime)): log.warning( 'Reading Record No. {} -> {} [Skipping]'.format( self.counter_records, self.datatime.ctime()), self.name) continue break log.log('Reading Record No. {} -> {}'.format( self.counter_records, self.datatime.ctime()), self.name) return 1 def readBlock(self): pointer = self.fp.tell() heights, dt = self.readHeader() self.fp.seek(pointer) buffer_h = [] buffer_d = [] while True: pointer = self.fp.tell() if pointer == self.sizeOfFile: return 0 heights, datatime = self.readHeader() if dt == datatime: buffer_h.append(heights) buffer_d.append(self.readData(len(heights))) continue self.fp.seek(pointer) break if dt.date() > self.datatime.date(): self.flagDiscontinuousBlock = 1 self.datatime = dt self.time = (dt - datetime.datetime(1970, 1, 1)).total_seconds() + time.timezone self.heights = numpy.concatenate(buffer_h) self.buffer = numpy.zeros((5, len(self.heights))) + numpy.nan self.buffer[0, :] = numpy.concatenate([buf[0] for buf in buffer_d]) self.buffer[1, :] = numpy.concatenate([buf[1] for buf in buffer_d]) self.buffer[2, :] = numpy.concatenate([buf[2] for buf in buffer_d]) self.buffer[3, :] = numpy.concatenate([buf[3] for buf in buffer_d]) self.buffer[4, :] = numpy.concatenate([buf[4] for buf in buffer_d]) self.counter_records += 1 return 1 def readHeader(self): ''' Parse recordHeader ''' self.header_rec = numpy.fromfile(self.fp, REC_HEADER_STRUCTURE, 1) self.interval = self.header_rec['interval'] if self.header_rec['magic'] == 888.: self.header_rec['h0'] = round(self.header_rec['h0'], 2) nheights = int(self.header_rec['nheights']) hours = float(self.header_rec['hours'][0]) heights = numpy.arange(nheights) * self.dH + self.header_rec['h0'] datatime = datetime.datetime(self.year, 1, 1) + datetime.timedelta(days=self.doy-1, hours=hours) return heights, datatime else: return False def readData(self, N): ''' Parse data ''' buffer = numpy.fromfile(self.fp, 'f', 8*N).reshape(N, 8) pow0 = buffer[:, 0] pow1 = buffer[:, 1] acf0 = (buffer[:,2] + buffer[:,3]*1j) / pow0 acf1 = (buffer[:,4] + buffer[:,5]*1j) / pow1 dccf = (buffer[:,6] + buffer[:,7]*1j) / (pow0*pow1) ### SNR sno = (pow0 + pow1 - self.header_rec['snr']) / self.header_rec['snr'] sno10 = numpy.log10(sno) # dsno = 1.0 / numpy.sqrt(self.header_file['nint'] * self.header_file['navg']) * (1 + (1 / sno)) ### Vertical Drift sp = numpy.sqrt(numpy.abs(acf0)*numpy.abs(acf1)) sp[numpy.where(numpy.abs(sp) >= 1.0)] = numpy.sqrt(0.9999) vzo = -numpy.arctan2(acf0.imag + acf1.imag,acf0.real + acf1.real)*1.5E5*1.5/(self.ipp*numpy.pi) dvzo = numpy.sqrt(1.0 - sp*sp)*0.338*1.5E5/(numpy.sqrt(self.header_file['nint']*self.header_file['navg'])*sp*self.ipp) err = numpy.where(dvzo <= 0.1) dvzo[err] = 0.1 #Zonal Drifts dt = self.header_file['nint']*self.ipp / 1.5E5 coh = numpy.sqrt(numpy.abs(dccf)) err = numpy.where(coh >= 1.0) coh[err] = numpy.sqrt(0.99999) err = numpy.where(coh <= 0.1) coh[err] = numpy.sqrt(0.1) vxo = numpy.arctan2(dccf.imag, dccf.real)*self.header_rec['h0']*1.0E3/(self.kd*dt) dvxo = numpy.sqrt(1.0 - coh*coh)*self.header_rec['h0']*1.0E3/(numpy.sqrt(self.header_file['nint']*self.header_file['navg'])*coh*self.kd*dt) err = numpy.where(dvxo <= 0.1) dvxo[err] = 0.1 return vzo, dvzo, vxo, dvxo, sno10 def set_output(self): ''' Storing data from databuffer to dataOut object ''' self.dataOut.data_SNR = self.buffer[4].reshape(1, -1) self.dataOut.heightList = self.heights self.dataOut.data_param = self.buffer[0:4,] self.dataOut.utctimeInit = self.time self.dataOut.utctime = self.time self.dataOut.useLocalTime = True self.dataOut.paramInterval = self.interval self.dataOut.timezone = self.timezone self.dataOut.sizeOfFile = self.sizeOfFile self.dataOut.flagNoData = False self.dataOut.flagDiscontinuousBlock = self.flagDiscontinuousBlock def getData(self): ''' Storing data from databuffer to dataOut object ''' if self.flagNoMoreFiles: self.dataOut.flagNoData = True log.success('No file left to process', self.name) return 0 if not self.readNextBlock(): self.dataOut.flagNoData = True return 0 self.set_output() return 1