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Add C extension for hildebrand_sekhon noise estimation and update requirements versions in setup
Add C extension for hildebrand_sekhon noise estimation and update requirements versions in setup

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extensions.c
55 lines | 1.5 KiB | text/x-c | CLexer
#include <Python.h>
#include <numpy/arrayobject.h>
#include <math.h>
static PyObject *hildebrand_sekhon(PyObject *self, PyObject *args);
static PyMethodDef extensionsMethods[] = {
{ "hildebrand_sekhon", (PyCFunction)hildebrand_sekhon, METH_VARARGS, "get noise with" },
{ NULL, NULL, 0, NULL }
};
PyMODINIT_FUNC initcSchain() {
Py_InitModule("cSchain", extensionsMethods);
import_array();
}
static PyObject *hildebrand_sekhon(PyObject *self, PyObject *args) {
/* Do your stuff here. */
double navg;
PyObject *data_obj, *data_array;
if (!PyArg_ParseTuple(args, "Od", &data_obj, &navg)) return NULL;
data_array = PyArray_FROM_OTF(data_obj, NPY_FLOAT64, NPY_IN_ARRAY);
if (data_array == NULL) {
Py_XDECREF(data_array);
Py_XDECREF(data_obj);
return NULL;
}
double *sortdata = (double*)PyArray_DATA(data_array);
int lenOfData = (int)PyArray_SIZE(data_array) ;
double nums_min = lenOfData*0.2;
if (nums_min <= 5) nums_min = 5;
double sump = 0;
double sumq = 0;
int j = 0;
int cont = 1;
double rtest = 0;
while ((cont == 1) && (j < lenOfData)) {
sump = sump + sortdata[j];
sumq = sumq + pow(sortdata[j], 2);
if (j > nums_min) {
rtest = (double)j/(j-1) + 1/navg;
if ((sumq*j) > (rtest*pow(sump, 2))) {
j = j - 1;
sump = sump - sortdata[j];
sumq = sumq - pow(sortdata[j],2);
cont = 0;
}
}
j = j + 1;
}
double lnoise = sump / j;
return Py_BuildValue("d", lnoise);
}