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import numpy
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from jroproc_base import ProcessingUnit, Operation
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from model.data.jrodata import Voltage
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class VoltageProc(ProcessingUnit):
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def __init__(self):
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ProcessingUnit.__init__(self)
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# self.objectDict = {}
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self.dataOut = Voltage()
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self.flip = 1
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def run(self):
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if self.dataIn.type == 'AMISR':
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self.__updateObjFromAmisrInput()
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if self.dataIn.type == 'Voltage':
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self.dataOut.copy(self.dataIn)
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# self.dataOut.copy(self.dataIn)
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def __updateObjFromAmisrInput(self):
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self.dataOut.timeZone = self.dataIn.timeZone
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self.dataOut.dstFlag = self.dataIn.dstFlag
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self.dataOut.errorCount = self.dataIn.errorCount
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self.dataOut.useLocalTime = self.dataIn.useLocalTime
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self.dataOut.flagNoData = self.dataIn.flagNoData
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self.dataOut.data = self.dataIn.data
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self.dataOut.utctime = self.dataIn.utctime
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self.dataOut.channelList = self.dataIn.channelList
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self.dataOut.timeInterval = self.dataIn.timeInterval
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self.dataOut.heightList = self.dataIn.heightList
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self.dataOut.nProfiles = self.dataIn.nProfiles
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self.dataOut.nCohInt = self.dataIn.nCohInt
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self.dataOut.ippSeconds = self.dataIn.ippSeconds
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self.dataOut.frequency = self.dataIn.frequency
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#
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# pass#
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#
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# def init(self):
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#
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#
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# if self.dataIn.type == 'AMISR':
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# self.__updateObjFromAmisrInput()
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#
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# if self.dataIn.type == 'Voltage':
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# self.dataOut.copy(self.dataIn)
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# # No necesita copiar en cada init() los atributos de dataIn
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# # la copia deberia hacerse por cada nuevo bloque de datos
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def selectChannels(self, channelList):
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channelIndexList = []
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for channel in channelList:
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index = self.dataOut.channelList.index(channel)
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channelIndexList.append(index)
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self.selectChannelsByIndex(channelIndexList)
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def selectChannelsByIndex(self, channelIndexList):
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"""
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Selecciona un bloque de datos en base a canales segun el channelIndexList
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Input:
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channelIndexList : lista sencilla de canales a seleccionar por ej. [2,3,7]
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Affected:
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self.dataOut.data
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self.dataOut.channelIndexList
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self.dataOut.nChannels
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self.dataOut.m_ProcessingHeader.totalSpectra
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self.dataOut.systemHeaderObj.numChannels
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self.dataOut.m_ProcessingHeader.blockSize
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Return:
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None
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"""
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for channelIndex in channelIndexList:
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if channelIndex not in self.dataOut.channelIndexList:
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print channelIndexList
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raise ValueError, "The value %d in channelIndexList is not valid" %channelIndex
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# nChannels = len(channelIndexList)
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data = self.dataOut.data[channelIndexList,:]
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self.dataOut.data = data
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self.dataOut.channelList = [self.dataOut.channelList[i] for i in channelIndexList]
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# self.dataOut.nChannels = nChannels
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return 1
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def selectHeights(self, minHei=None, maxHei=None):
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"""
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Selecciona un bloque de datos en base a un grupo de valores de alturas segun el rango
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minHei <= height <= maxHei
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Input:
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minHei : valor minimo de altura a considerar
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maxHei : valor maximo de altura a considerar
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Affected:
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Indirectamente son cambiados varios valores a travez del metodo selectHeightsByIndex
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Return:
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1 si el metodo se ejecuto con exito caso contrario devuelve 0
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"""
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if minHei == None:
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minHei = self.dataOut.heightList[0]
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if maxHei == None:
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maxHei = self.dataOut.heightList[-1]
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if (minHei < self.dataOut.heightList[0]) or (minHei > maxHei):
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raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
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if (maxHei > self.dataOut.heightList[-1]):
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maxHei = self.dataOut.heightList[-1]
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# raise ValueError, "some value in (%d,%d) is not valid" % (minHei, maxHei)
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minIndex = 0
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maxIndex = 0
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heights = self.dataOut.heightList
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inda = numpy.where(heights >= minHei)
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indb = numpy.where(heights <= maxHei)
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try:
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minIndex = inda[0][0]
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except:
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minIndex = 0
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try:
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maxIndex = indb[0][-1]
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except:
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maxIndex = len(heights)
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self.selectHeightsByIndex(minIndex, maxIndex)
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return 1
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def selectHeightsByIndex(self, minIndex, maxIndex):
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"""
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Selecciona un bloque de datos en base a un grupo indices de alturas segun el rango
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minIndex <= index <= maxIndex
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Input:
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minIndex : valor de indice minimo de altura a considerar
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maxIndex : valor de indice maximo de altura a considerar
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Affected:
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self.dataOut.data
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self.dataOut.heightList
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Return:
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1 si el metodo se ejecuto con exito caso contrario devuelve 0
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"""
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if (minIndex < 0) or (minIndex > maxIndex):
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raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
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if (maxIndex >= self.dataOut.nHeights):
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maxIndex = self.dataOut.nHeights-1
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# raise ValueError, "some value in (%d,%d) is not valid" % (minIndex, maxIndex)
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# nHeights = maxIndex - minIndex + 1
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#voltage
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data = self.dataOut.data[:,minIndex:maxIndex+1]
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# firstHeight = self.dataOut.heightList[minIndex]
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self.dataOut.data = data
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self.dataOut.heightList = self.dataOut.heightList[minIndex:maxIndex+1]
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return 1
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def filterByHeights(self, window, axis=1):
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deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
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if window == None:
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window = (self.dataOut.radarControllerHeaderObj.txA/self.dataOut.radarControllerHeaderObj.nBaud) / deltaHeight
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newdelta = deltaHeight * window
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r = self.dataOut.data.shape[axis] % window
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if axis == 1:
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buffer = self.dataOut.data[:,0:self.dataOut.data.shape[axis]-r]
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buffer = buffer.reshape(self.dataOut.data.shape[0],self.dataOut.data.shape[axis]/window,window)
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buffer = numpy.sum(buffer,axis+1)
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elif axis == 2:
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buffer = self.dataOut.data[:, :, 0:self.dataOut.data.shape[axis]-r]
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buffer = buffer.reshape(self.dataOut.data.shape[0],self.dataOut.data.shape[1],self.dataOut.data.shape[axis]/window,window)
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buffer = numpy.sum(buffer,axis+1)
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else:
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raise ValueError, "axis value should be 1 or 2, the input value %d is not valid" % (axis)
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self.dataOut.data = buffer.copy()
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self.dataOut.heightList = numpy.arange(self.dataOut.heightList[0],newdelta*(self.dataOut.nHeights-r)/window,newdelta)
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self.dataOut.windowOfFilter = window
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return 1
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def deFlip(self):
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self.dataOut.data *= self.flip
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self.flip *= -1.
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def setRadarFrequency(self, frequency=None):
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if frequency != None:
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self.dataOut.frequency = frequency
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return 1
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class CohInt(Operation):
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isConfig = False
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__profIndex = 0
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__withOverapping = False
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__byTime = False
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__initime = None
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__lastdatatime = None
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__integrationtime = None
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__buffer = None
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__dataReady = False
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n = None
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def __init__(self):
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Operation.__init__(self)
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# self.isConfig = False
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def setup(self, n=None, timeInterval=None, overlapping=False, byblock=False):
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"""
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Set the parameters of the integration class.
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Inputs:
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n : Number of coherent integrations
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timeInterval : Time of integration. If the parameter "n" is selected this one does not work
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overlapping :
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"""
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self.__initime = None
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self.__lastdatatime = 0
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self.__buffer = None
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self.__dataReady = False
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self.byblock = byblock
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if n == None and timeInterval == None:
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raise ValueError, "n or timeInterval should be specified ..."
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if n != None:
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self.n = n
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self.__byTime = False
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else:
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self.__integrationtime = timeInterval * 60. #if (type(timeInterval)!=integer) -> change this line
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self.n = 9999
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self.__byTime = True
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if overlapping:
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self.__withOverapping = True
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self.__buffer = None
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else:
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self.__withOverapping = False
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self.__buffer = 0
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self.__profIndex = 0
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def putData(self, data):
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"""
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Add a profile to the __buffer and increase in one the __profileIndex
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"""
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if not self.__withOverapping:
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self.__buffer += data.copy()
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self.__profIndex += 1
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return
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#Overlapping data
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nChannels, nHeis = data.shape
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data = numpy.reshape(data, (1, nChannels, nHeis))
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#If the buffer is empty then it takes the data value
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if self.__buffer == None:
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self.__buffer = data
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self.__profIndex += 1
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return
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#If the buffer length is lower than n then stakcing the data value
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if self.__profIndex < self.n:
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self.__buffer = numpy.vstack((self.__buffer, data))
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self.__profIndex += 1
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return
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#If the buffer length is equal to n then replacing the last buffer value with the data value
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self.__buffer = numpy.roll(self.__buffer, -1, axis=0)
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self.__buffer[self.n-1] = data
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self.__profIndex = self.n
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return
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def pushData(self):
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"""
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Return the sum of the last profiles and the profiles used in the sum.
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Affected:
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self.__profileIndex
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"""
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if not self.__withOverapping:
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data = self.__buffer
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n = self.__profIndex
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self.__buffer = 0
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self.__profIndex = 0
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return data, n
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#Integration with Overlapping
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data = numpy.sum(self.__buffer, axis=0)
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n = self.__profIndex
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return data, n
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def byProfiles(self, data):
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self.__dataReady = False
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avgdata = None
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# n = None
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self.putData(data)
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if self.__profIndex == self.n:
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avgdata, n = self.pushData()
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self.__dataReady = True
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return avgdata
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def byTime(self, data, datatime):
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self.__dataReady = False
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avgdata = None
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n = None
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self.putData(data)
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if (datatime - self.__initime) >= self.__integrationtime:
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avgdata, n = self.pushData()
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self.n = n
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self.__dataReady = True
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return avgdata
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def integrate(self, data, datatime=None):
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if self.__initime == None:
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self.__initime = datatime
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if self.__byTime:
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avgdata = self.byTime(data, datatime)
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else:
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avgdata = self.byProfiles(data)
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self.__lastdatatime = datatime
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if avgdata == None:
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return None, None
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avgdatatime = self.__initime
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deltatime = datatime -self.__lastdatatime
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if not self.__withOverapping:
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self.__initime = datatime
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else:
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self.__initime += deltatime
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return avgdata, avgdatatime
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def integrateByBlock(self, dataOut):
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times = int(dataOut.data.shape[1]/self.n)
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avgdata = numpy.zeros((dataOut.nChannels, times, dataOut.nHeights), dtype=numpy.complex)
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id_min = 0
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id_max = self.n
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for i in range(times):
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junk = dataOut.data[:,id_min:id_max,:]
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avgdata[:,i,:] = junk.sum(axis=1)
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id_min += self.n
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id_max += self.n
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timeInterval = dataOut.ippSeconds*self.n
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avgdatatime = (times - 1) * timeInterval + dataOut.utctime
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self.__dataReady = True
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return avgdata, avgdatatime
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def run(self, dataOut, **kwargs):
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if not self.isConfig:
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self.setup(**kwargs)
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self.isConfig = True
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if self.byblock:
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avgdata, avgdatatime = self.integrateByBlock(dataOut)
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else:
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avgdata, avgdatatime = self.integrate(dataOut.data, dataOut.utctime)
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# dataOut.timeInterval *= n
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dataOut.flagNoData = True
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if self.__dataReady:
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dataOut.data = avgdata
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dataOut.nCohInt *= self.n
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dataOut.utctime = avgdatatime
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dataOut.timeInterval = dataOut.ippSeconds * dataOut.nCohInt
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dataOut.flagNoData = False
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class Decoder(Operation):
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isConfig = False
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__profIndex = 0
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code = None
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nCode = None
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nBaud = None
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def __init__(self):
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Operation.__init__(self)
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self.times = None
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self.osamp = None
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self.__setValues = False
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# self.isConfig = False
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def setup(self, code, shape, times, osamp):
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self.__profIndex = 0
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self.code = code
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self.nCode = len(code)
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self.nBaud = len(code[0])
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if times != None:
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self.times = times
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if ((osamp != None) and (osamp >1)):
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self.osamp = osamp
|
|
|
self.code = numpy.repeat(code, repeats=self.osamp,axis=1)
|
|
|
self.nBaud = self.nBaud*self.osamp
|
|
|
|
|
|
if len(shape) == 2:
|
|
|
self.__nChannels, self.__nHeis = shape
|
|
|
|
|
|
__codeBuffer = numpy.zeros((self.nCode, self.__nHeis), dtype=numpy.complex)
|
|
|
|
|
|
__codeBuffer[:,0:self.nBaud] = self.code
|
|
|
|
|
|
self.fft_code = numpy.conj(numpy.fft.fft(__codeBuffer, axis=1))
|
|
|
|
|
|
self.ndatadec = self.__nHeis - self.nBaud + 1
|
|
|
|
|
|
self.datadecTime = numpy.zeros((self.__nChannels, self.ndatadec), dtype=numpy.complex)
|
|
|
else:
|
|
|
self.__nChannels, self.__nProfiles, self.__nHeis = shape
|
|
|
|
|
|
self.ndatadec = self.__nHeis - self.nBaud + 1
|
|
|
|
|
|
self.datadecTime = numpy.zeros((self.__nChannels, self.__nProfiles, self.ndatadec), dtype=numpy.complex)
|
|
|
|
|
|
|
|
|
|
|
|
def convolutionInFreq(self, data):
|
|
|
|
|
|
fft_code = self.fft_code[self.__profIndex].reshape(1,-1)
|
|
|
|
|
|
fft_data = numpy.fft.fft(data, axis=1)
|
|
|
|
|
|
conv = fft_data*fft_code
|
|
|
|
|
|
data = numpy.fft.ifft(conv,axis=1)
|
|
|
|
|
|
datadec = data[:,:-self.nBaud+1]
|
|
|
|
|
|
return datadec
|
|
|
|
|
|
def convolutionInFreqOpt(self, data):
|
|
|
|
|
|
fft_code = self.fft_code[self.__profIndex].reshape(1,-1)
|
|
|
|
|
|
data = cfunctions.decoder(fft_code, data)
|
|
|
|
|
|
datadec = data[:,:-self.nBaud+1]
|
|
|
|
|
|
return datadec
|
|
|
|
|
|
def convolutionInTime(self, data):
|
|
|
|
|
|
code = self.code[self.__profIndex]
|
|
|
|
|
|
for i in range(self.__nChannels):
|
|
|
self.datadecTime[i,:] = numpy.correlate(data[i,:], code, mode='valid')
|
|
|
|
|
|
return self.datadecTime
|
|
|
|
|
|
def convolutionByBlockInTime(self, data):
|
|
|
junk = numpy.lib.stride_tricks.as_strided(self.code, (self.times, self.code.size), (0, self.code.itemsize))
|
|
|
junk = junk.flatten()
|
|
|
code_block = numpy.reshape(junk, (self.nCode*self.times,self.nBaud))
|
|
|
|
|
|
for i in range(self.__nChannels):
|
|
|
for j in range(self.__nProfiles):
|
|
|
self.datadecTime[i,j,:] = numpy.correlate(data[i,j,:], code_block[j,:], mode='valid')
|
|
|
|
|
|
return self.datadecTime
|
|
|
|
|
|
def run(self, dataOut, code=None, nCode=None, nBaud=None, mode = 0, times=None, osamp=None):
|
|
|
|
|
|
if code == None:
|
|
|
code = dataOut.code
|
|
|
else:
|
|
|
code = numpy.array(code).reshape(nCode,nBaud)
|
|
|
|
|
|
|
|
|
|
|
|
if not self.isConfig:
|
|
|
|
|
|
self.setup(code, dataOut.data.shape, times, osamp)
|
|
|
|
|
|
dataOut.code = code
|
|
|
dataOut.nCode = nCode
|
|
|
dataOut.nBaud = nBaud
|
|
|
dataOut.radarControllerHeaderObj.code = code
|
|
|
dataOut.radarControllerHeaderObj.nCode = nCode
|
|
|
dataOut.radarControllerHeaderObj.nBaud = nBaud
|
|
|
|
|
|
self.isConfig = True
|
|
|
|
|
|
if mode == 0:
|
|
|
datadec = self.convolutionInTime(dataOut.data)
|
|
|
|
|
|
if mode == 1:
|
|
|
datadec = self.convolutionInFreq(dataOut.data)
|
|
|
|
|
|
if mode == 2:
|
|
|
datadec = self.convolutionInFreqOpt(dataOut.data)
|
|
|
|
|
|
if mode == 3:
|
|
|
datadec = self.convolutionByBlockInTime(dataOut.data)
|
|
|
|
|
|
if not(self.__setValues):
|
|
|
dataOut.code = self.code
|
|
|
dataOut.nCode = self.nCode
|
|
|
dataOut.nBaud = self.nBaud
|
|
|
dataOut.radarControllerHeaderObj.code = self.code
|
|
|
dataOut.radarControllerHeaderObj.nCode = self.nCode
|
|
|
dataOut.radarControllerHeaderObj.nBaud = self.nBaud
|
|
|
self.__setValues = True
|
|
|
|
|
|
dataOut.data = datadec
|
|
|
|
|
|
dataOut.heightList = dataOut.heightList[0:self.ndatadec]
|
|
|
|
|
|
dataOut.flagDecodeData = True #asumo q la data no esta decodificada
|
|
|
|
|
|
if self.__profIndex == self.nCode-1:
|
|
|
self.__profIndex = 0
|
|
|
return 1
|
|
|
|
|
|
self.__profIndex += 1
|
|
|
|
|
|
return 1
|
|
|
# dataOut.flagDeflipData = True #asumo q la data no esta sin flip
|
|
|
|
|
|
|
|
|
class ProfileConcat(Operation):
|
|
|
|
|
|
isConfig = False
|
|
|
buffer = None
|
|
|
|
|
|
def __init__(self):
|
|
|
|
|
|
Operation.__init__(self)
|
|
|
self.profileIndex = 0
|
|
|
|
|
|
def reset(self):
|
|
|
self.buffer = numpy.zeros_like(self.buffer)
|
|
|
self.start_index = 0
|
|
|
self.times = 1
|
|
|
|
|
|
def setup(self, data, m, n=1):
|
|
|
self.buffer = numpy.zeros((data.shape[0],data.shape[1]*m),dtype=type(data[0,0]))
|
|
|
self.profiles = data.shape[1]
|
|
|
self.start_index = 0
|
|
|
self.times = 1
|
|
|
|
|
|
def concat(self, data):
|
|
|
|
|
|
self.buffer[:,self.start_index:self.profiles*self.times] = data.copy()
|
|
|
self.start_index = self.start_index + self.profiles
|
|
|
|
|
|
def run(self, dataOut, m):
|
|
|
|
|
|
dataOut.flagNoData = True
|
|
|
|
|
|
if not self.isConfig:
|
|
|
self.setup(dataOut.data, m, 1)
|
|
|
self.isConfig = True
|
|
|
|
|
|
self.concat(dataOut.data)
|
|
|
self.times += 1
|
|
|
if self.times > m:
|
|
|
dataOut.data = self.buffer
|
|
|
self.reset()
|
|
|
dataOut.flagNoData = False
|
|
|
# se deben actualizar mas propiedades del header y del objeto dataOut, por ejemplo, las alturas
|
|
|
deltaHeight = dataOut.heightList[1] - dataOut.heightList[0]
|
|
|
xf = dataOut.heightList[0] + dataOut.nHeights * deltaHeight * 5
|
|
|
dataOut.heightList = numpy.arange(dataOut.heightList[0], xf, deltaHeight)
|
|
|
|
|
|
class ProfileSelector(Operation):
|
|
|
|
|
|
profileIndex = None
|
|
|
# Tamanho total de los perfiles
|
|
|
nProfiles = None
|
|
|
|
|
|
def __init__(self):
|
|
|
|
|
|
Operation.__init__(self)
|
|
|
self.profileIndex = 0
|
|
|
|
|
|
def incIndex(self):
|
|
|
self.profileIndex += 1
|
|
|
|
|
|
if self.profileIndex >= self.nProfiles:
|
|
|
self.profileIndex = 0
|
|
|
|
|
|
def isProfileInRange(self, minIndex, maxIndex):
|
|
|
|
|
|
if self.profileIndex < minIndex:
|
|
|
return False
|
|
|
|
|
|
if self.profileIndex > maxIndex:
|
|
|
return False
|
|
|
|
|
|
return True
|
|
|
|
|
|
def isProfileInList(self, profileList):
|
|
|
|
|
|
if self.profileIndex not in profileList:
|
|
|
return False
|
|
|
|
|
|
return True
|
|
|
|
|
|
def run(self, dataOut, profileList=None, profileRangeList=None, beam=None, byblock=False):
|
|
|
|
|
|
dataOut.flagNoData = True
|
|
|
self.nProfiles = dataOut.nProfiles
|
|
|
|
|
|
if byblock:
|
|
|
|
|
|
if profileList != None:
|
|
|
dataOut.data = dataOut.data[:,profileList,:]
|
|
|
pass
|
|
|
else:
|
|
|
pmin = profileRangeList[0]
|
|
|
pmax = profileRangeList[1]
|
|
|
dataOut.data = dataOut.data[:,pmin:pmax+1,:]
|
|
|
dataOut.flagNoData = False
|
|
|
self.profileIndex = 0
|
|
|
return 1
|
|
|
|
|
|
if profileList != None:
|
|
|
if self.isProfileInList(profileList):
|
|
|
dataOut.flagNoData = False
|
|
|
|
|
|
self.incIndex()
|
|
|
return 1
|
|
|
|
|
|
|
|
|
elif profileRangeList != None:
|
|
|
minIndex = profileRangeList[0]
|
|
|
maxIndex = profileRangeList[1]
|
|
|
if self.isProfileInRange(minIndex, maxIndex):
|
|
|
dataOut.flagNoData = False
|
|
|
|
|
|
self.incIndex()
|
|
|
return 1
|
|
|
elif beam != None: #beam is only for AMISR data
|
|
|
if self.isProfileInList(dataOut.beamRangeDict[beam]):
|
|
|
dataOut.flagNoData = False
|
|
|
|
|
|
self.incIndex()
|
|
|
return 1
|
|
|
|
|
|
else:
|
|
|
raise ValueError, "ProfileSelector needs profileList or profileRangeList"
|
|
|
|
|
|
return 0
|
|
|
|
|
|
|
|
|
|
|
|
class Reshaper(Operation):
|
|
|
def __init__(self):
|
|
|
Operation.__init__(self)
|
|
|
self.updateNewHeights = False
|
|
|
|
|
|
def run(self, dataOut, shape):
|
|
|
shape_tuple = tuple(shape)
|
|
|
dataOut.data = numpy.reshape(dataOut.data, shape_tuple)
|
|
|
dataOut.flagNoData = False
|
|
|
|
|
|
if not(self.updateNewHeights):
|
|
|
old_nheights = dataOut.nHeights
|
|
|
new_nheights = dataOut.data.shape[2]
|
|
|
factor = new_nheights / old_nheights
|
|
|
deltaHeight = dataOut.heightList[1] - dataOut.heightList[0]
|
|
|
xf = dataOut.heightList[0] + dataOut.nHeights * deltaHeight * factor
|
|
|
dataOut.heightList = numpy.arange(dataOut.heightList[0], xf, deltaHeight)
|
