| @@ -1,1257 +1,1256 | |||
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1 | 1 | ''' |
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2 | 2 | Updated on January , 2018, for multiprocessing purposes |
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3 | 3 | Author: Sergio Cortez |
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4 | 4 | Created on September , 2012 |
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5 | 5 | ''' |
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6 | 6 | from platform import python_version |
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7 | 7 | import sys |
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8 | 8 | import ast |
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9 | 9 | import datetime |
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10 | 10 | import traceback |
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11 | 11 | import math |
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12 | 12 | import time |
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13 | 13 | import zmq |
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14 | 14 | from multiprocessing import Process, cpu_count |
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15 | 15 | from threading import Thread |
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16 | 16 | from xml.etree.ElementTree import ElementTree, Element, SubElement, tostring |
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17 | 17 | from xml.dom import minidom |
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18 | 18 | |
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19 | 19 | |
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20 | 20 | from schainpy.admin import Alarm, SchainWarning |
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21 | 21 | from schainpy.model import * |
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22 | 22 | from schainpy.utils import log |
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23 | 23 | |
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24 | 24 | |
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25 | 25 | DTYPES = { |
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26 | 26 | 'Voltage': '.r', |
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27 | 27 | 'Spectra': '.pdata' |
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28 | 28 | } |
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29 | 29 | |
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30 | 30 | |
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31 | 31 | def MPProject(project, n=cpu_count()): |
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32 | 32 | ''' |
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33 | 33 | Project wrapper to run schain in n processes |
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34 | 34 | ''' |
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35 | 35 | |
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36 | 36 | rconf = project.getReadUnitObj() |
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37 | 37 | op = rconf.getOperationObj('run') |
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38 | 38 | dt1 = op.getParameterValue('startDate') |
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39 | 39 | dt2 = op.getParameterValue('endDate') |
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40 | 40 | tm1 = op.getParameterValue('startTime') |
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41 | 41 | tm2 = op.getParameterValue('endTime') |
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42 | 42 | days = (dt2 - dt1).days |
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43 | 43 | |
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44 | 44 | for day in range(days + 1): |
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45 | 45 | skip = 0 |
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46 | 46 | cursor = 0 |
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47 | 47 | processes = [] |
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48 | 48 | dt = dt1 + datetime.timedelta(day) |
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49 | 49 | dt_str = dt.strftime('%Y/%m/%d') |
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50 | 50 | reader = JRODataReader() |
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51 | 51 | paths, files = reader.searchFilesOffLine(path=rconf.path, |
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52 | 52 | startDate=dt, |
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53 | 53 | endDate=dt, |
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54 | 54 | startTime=tm1, |
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55 | 55 | endTime=tm2, |
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56 | 56 | ext=DTYPES[rconf.datatype]) |
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57 | 57 | nFiles = len(files) |
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58 | 58 | if nFiles == 0: |
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59 | 59 | continue |
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60 | 60 | skip = int(math.ceil(nFiles / n)) |
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61 | 61 | while nFiles > cursor * skip: |
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62 | 62 | rconf.update(startDate=dt_str, endDate=dt_str, cursor=cursor, |
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63 | 63 | skip=skip) |
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64 | 64 | p = project.clone() |
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65 | 65 | p.start() |
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66 | 66 | processes.append(p) |
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67 | 67 | cursor += 1 |
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68 | 68 | |
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69 | 69 | def beforeExit(exctype, value, trace): |
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70 | 70 | for process in processes: |
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71 | 71 | process.terminate() |
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72 | 72 | process.join() |
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73 | 73 | print(traceback.print_tb(trace)) |
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74 | 74 | |
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75 | 75 | sys.excepthook = beforeExit |
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76 | 76 | |
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77 | 77 | for process in processes: |
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78 | 78 | process.join() |
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79 | 79 | process.terminate() |
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80 | 80 | |
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81 | 81 | time.sleep(3) |
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82 | 82 | |
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83 | 83 | def wait(context): |
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84 | 84 | |
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85 | 85 | time.sleep(1) |
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86 | 86 | c = zmq.Context() |
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87 | 87 | receiver = c.socket(zmq.SUB) |
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88 | 88 | receiver.connect('ipc:///tmp/schain_{}_pub'.format(self.id)) |
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89 | 89 | receiver.setsockopt(zmq.SUBSCRIBE, self.id.encode()) |
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90 | 90 | msg = receiver.recv_multipart()[1] |
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91 | 91 | context.terminate() |
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92 | 92 | |
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93 | 93 | class ParameterConf(): |
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94 | 94 | |
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95 | 95 | id = None |
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96 | 96 | name = None |
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97 | 97 | value = None |
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98 | 98 | format = None |
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99 | 99 | |
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100 | 100 | __formated_value = None |
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101 | 101 | |
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102 | 102 | ELEMENTNAME = 'Parameter' |
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103 | 103 | |
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104 | 104 | def __init__(self): |
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105 | 105 | |
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106 | 106 | self.format = 'str' |
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107 | 107 | |
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108 | 108 | def getElementName(self): |
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109 | 109 | |
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110 | 110 | return self.ELEMENTNAME |
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111 | 111 | |
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112 | 112 | def getValue(self): |
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113 | 113 | |
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114 | 114 | value = self.value |
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115 | 115 | format = self.format |
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116 | 116 | |
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117 | 117 | if self.__formated_value != None: |
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118 | 118 | |
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119 | 119 | return self.__formated_value |
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120 | 120 | |
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121 | 121 | if format == 'obj': |
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122 | 122 | return value |
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123 | 123 | |
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124 | 124 | if format == 'str': |
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125 | 125 | self.__formated_value = str(value) |
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126 | 126 | return self.__formated_value |
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127 | 127 | |
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128 | 128 | if value == '': |
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129 | 129 | raise ValueError('%s: This parameter value is empty' % self.name) |
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130 | 130 | |
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131 | 131 | if format == 'list': |
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132 | strList = value.split(',') | |
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133 | ||
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132 | strList = [s.strip() for s in value.split(',')] | |
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134 | 133 | self.__formated_value = strList |
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135 | 134 | |
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136 | 135 | return self.__formated_value |
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137 | 136 | |
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138 | 137 | if format == 'intlist': |
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139 | 138 | ''' |
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140 | 139 | Example: |
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141 | 140 | value = (0,1,2) |
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142 | 141 | ''' |
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143 | 142 | |
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144 | 143 | new_value = ast.literal_eval(value) |
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145 | 144 | |
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146 | 145 | if type(new_value) not in (tuple, list): |
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147 | 146 | new_value = [int(new_value)] |
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148 | 147 | |
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149 | 148 | self.__formated_value = new_value |
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150 | 149 | |
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151 | 150 | return self.__formated_value |
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152 | 151 | |
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153 | 152 | if format == 'floatlist': |
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154 | 153 | ''' |
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155 | 154 | Example: |
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156 | 155 | value = (0.5, 1.4, 2.7) |
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157 | 156 | ''' |
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158 | 157 | |
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159 | 158 | new_value = ast.literal_eval(value) |
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160 | 159 | |
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161 | 160 | if type(new_value) not in (tuple, list): |
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162 | 161 | new_value = [float(new_value)] |
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163 | 162 | |
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164 | 163 | self.__formated_value = new_value |
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165 | 164 | |
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166 | 165 | return self.__formated_value |
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167 | 166 | |
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168 | 167 | if format == 'date': |
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169 | 168 | strList = value.split('/') |
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170 | 169 | intList = [int(x) for x in strList] |
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171 | 170 | date = datetime.date(intList[0], intList[1], intList[2]) |
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172 | 171 | |
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173 | 172 | self.__formated_value = date |
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174 | 173 | |
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175 | 174 | return self.__formated_value |
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176 | 175 | |
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177 | 176 | if format == 'time': |
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178 | 177 | strList = value.split(':') |
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179 | 178 | intList = [int(x) for x in strList] |
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180 | 179 | time = datetime.time(intList[0], intList[1], intList[2]) |
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181 | 180 | |
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182 | 181 | self.__formated_value = time |
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183 | 182 | |
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184 | 183 | return self.__formated_value |
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185 | 184 | |
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186 | 185 | if format == 'pairslist': |
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187 | 186 | ''' |
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188 | 187 | Example: |
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189 | 188 | value = (0,1),(1,2) |
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190 | 189 | ''' |
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191 | 190 | |
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192 | 191 | new_value = ast.literal_eval(value) |
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193 | 192 | |
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194 | 193 | if type(new_value) not in (tuple, list): |
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195 | 194 | raise ValueError('%s has to be a tuple or list of pairs' % value) |
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196 | 195 | |
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197 | 196 | if type(new_value[0]) not in (tuple, list): |
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198 | 197 | if len(new_value) != 2: |
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199 | 198 | raise ValueError('%s has to be a tuple or list of pairs' % value) |
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200 | 199 | new_value = [new_value] |
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201 | 200 | |
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202 | 201 | for thisPair in new_value: |
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203 | 202 | if len(thisPair) != 2: |
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204 | 203 | raise ValueError('%s has to be a tuple or list of pairs' % value) |
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205 | 204 | |
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206 | 205 | self.__formated_value = new_value |
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207 | 206 | |
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208 | 207 | return self.__formated_value |
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209 | 208 | |
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210 | 209 | if format == 'multilist': |
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211 | 210 | ''' |
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212 | 211 | Example: |
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213 | 212 | value = (0,1,2),(3,4,5) |
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214 | 213 | ''' |
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215 | 214 | multiList = ast.literal_eval(value) |
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216 | 215 | |
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217 | 216 | if type(multiList[0]) == int: |
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218 | 217 | multiList = ast.literal_eval('(' + value + ')') |
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219 | 218 | |
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220 | 219 | self.__formated_value = multiList |
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221 | 220 | |
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222 | 221 | return self.__formated_value |
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223 | 222 | |
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224 | 223 | if format == 'bool': |
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225 | 224 | value = int(value) |
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226 | 225 | |
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227 | 226 | if format == 'int': |
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228 | 227 | value = float(value) |
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229 | 228 | |
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230 | 229 | format_func = eval(format) |
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231 | 230 | |
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232 | 231 | self.__formated_value = format_func(value) |
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233 | 232 | |
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234 | 233 | return self.__formated_value |
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235 | 234 | |
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236 | 235 | def updateId(self, new_id): |
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237 | 236 | |
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238 | 237 | self.id = str(new_id) |
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239 | 238 | |
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240 | 239 | def setup(self, id, name, value, format='str'): |
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241 | 240 | self.id = str(id) |
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242 | 241 | self.name = name |
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243 | 242 | if format == 'obj': |
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244 | 243 | self.value = value |
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245 | 244 | else: |
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246 | 245 | self.value = str(value) |
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247 | 246 | self.format = str.lower(format) |
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248 | 247 | |
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249 | 248 | self.getValue() |
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250 | 249 | |
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251 | 250 | return 1 |
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252 | 251 | |
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253 | 252 | def update(self, name, value, format='str'): |
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254 | 253 | |
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255 | 254 | self.name = name |
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256 | 255 | self.value = str(value) |
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257 | 256 | self.format = format |
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258 | 257 | |
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259 | 258 | def makeXml(self, opElement): |
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260 | 259 | if self.name not in ('queue',): |
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261 | 260 | parmElement = SubElement(opElement, self.ELEMENTNAME) |
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262 | 261 | parmElement.set('id', str(self.id)) |
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263 | 262 | parmElement.set('name', self.name) |
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264 | 263 | parmElement.set('value', self.value) |
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265 | 264 | parmElement.set('format', self.format) |
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266 | 265 | |
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267 | 266 | def readXml(self, parmElement): |
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268 | 267 | |
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269 | 268 | self.id = parmElement.get('id') |
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270 | 269 | self.name = parmElement.get('name') |
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271 | 270 | self.value = parmElement.get('value') |
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272 | 271 | self.format = str.lower(parmElement.get('format')) |
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273 | 272 | |
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274 | 273 | # Compatible with old signal chain version |
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275 | 274 | if self.format == 'int' and self.name == 'idfigure': |
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276 | 275 | self.name = 'id' |
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277 | 276 | |
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278 | 277 | def printattr(self): |
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279 | 278 | |
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280 | 279 | print('Parameter[%s]: name = %s, value = %s, format = %s, project_id = %s' % (self.id, self.name, self.value, self.format, self.project_id)) |
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281 | 280 | |
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282 | 281 | class OperationConf(): |
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283 | 282 | |
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284 | 283 | ELEMENTNAME = 'Operation' |
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285 | 284 | |
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286 | 285 | def __init__(self): |
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287 | 286 | |
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288 | 287 | self.id = '0' |
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289 | 288 | self.name = None |
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290 | 289 | self.priority = None |
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291 | 290 | self.topic = None |
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292 | 291 | |
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293 | 292 | def __getNewId(self): |
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294 | 293 | |
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295 | 294 | return int(self.id) * 10 + len(self.parmConfObjList) + 1 |
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296 | 295 | |
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297 | 296 | def getId(self): |
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298 | 297 | return self.id |
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299 | 298 | |
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300 | 299 | def updateId(self, new_id): |
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301 | 300 | |
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302 | 301 | self.id = str(new_id) |
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303 | 302 | |
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304 | 303 | n = 1 |
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305 | 304 | for parmObj in self.parmConfObjList: |
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306 | 305 | |
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307 | 306 | idParm = str(int(new_id) * 10 + n) |
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308 | 307 | parmObj.updateId(idParm) |
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309 | 308 | |
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310 | 309 | n += 1 |
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311 | 310 | |
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312 | 311 | def getElementName(self): |
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313 | 312 | |
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314 | 313 | return self.ELEMENTNAME |
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315 | 314 | |
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316 | 315 | def getParameterObjList(self): |
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317 | 316 | |
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318 | 317 | return self.parmConfObjList |
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319 | 318 | |
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320 | 319 | def getParameterObj(self, parameterName): |
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321 | 320 | |
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322 | 321 | for parmConfObj in self.parmConfObjList: |
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323 | 322 | |
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324 | 323 | if parmConfObj.name != parameterName: |
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325 | 324 | continue |
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326 | 325 | |
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327 | 326 | return parmConfObj |
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328 | 327 | |
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329 | 328 | return None |
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330 | 329 | |
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331 | 330 | def getParameterObjfromValue(self, parameterValue): |
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332 | 331 | |
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333 | 332 | for parmConfObj in self.parmConfObjList: |
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334 | 333 | |
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335 | 334 | if parmConfObj.getValue() != parameterValue: |
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336 | 335 | continue |
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337 | 336 | |
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338 | 337 | return parmConfObj.getValue() |
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339 | 338 | |
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340 | 339 | return None |
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341 | 340 | |
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342 | 341 | def getParameterValue(self, parameterName): |
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343 | 342 | |
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344 | 343 | parameterObj = self.getParameterObj(parameterName) |
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345 | 344 | |
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346 | 345 | # if not parameterObj: |
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347 | 346 | # return None |
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348 | 347 | |
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349 | 348 | value = parameterObj.getValue() |
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350 | 349 | |
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351 | 350 | return value |
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352 | 351 | |
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353 | 352 | def getKwargs(self): |
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354 | 353 | |
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355 | 354 | kwargs = {} |
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356 | 355 | |
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357 | 356 | for parmConfObj in self.parmConfObjList: |
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358 | 357 | if self.name == 'run' and parmConfObj.name == 'datatype': |
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359 | 358 | continue |
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360 | 359 | |
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361 | 360 | kwargs[parmConfObj.name] = parmConfObj.getValue() |
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362 | 361 | |
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363 | 362 | return kwargs |
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364 | 363 | |
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365 | 364 | def setup(self, id, name, priority, type, project_id): |
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366 | 365 | |
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367 | 366 | self.id = str(id) |
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368 | 367 | self.project_id = project_id |
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369 | 368 | self.name = name |
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370 | 369 | self.type = type |
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371 | 370 | self.priority = priority |
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372 | 371 | self.parmConfObjList = [] |
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373 | 372 | |
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374 | 373 | def removeParameters(self): |
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375 | 374 | |
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376 | 375 | for obj in self.parmConfObjList: |
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377 | 376 | del obj |
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378 | 377 | |
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379 | 378 | self.parmConfObjList = [] |
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380 | 379 | |
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381 | 380 | def addParameter(self, name, value, format='str'): |
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382 | 381 | |
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383 | 382 | if value is None: |
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384 | 383 | return None |
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385 | 384 | id = self.__getNewId() |
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386 | 385 | |
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387 | 386 | parmConfObj = ParameterConf() |
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388 | 387 | if not parmConfObj.setup(id, name, value, format): |
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389 | 388 | return None |
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390 | 389 | |
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391 | 390 | self.parmConfObjList.append(parmConfObj) |
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392 | 391 | |
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393 | 392 | return parmConfObj |
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394 | 393 | |
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395 | 394 | def changeParameter(self, name, value, format='str'): |
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396 | 395 | |
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397 | 396 | parmConfObj = self.getParameterObj(name) |
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398 | 397 | parmConfObj.update(name, value, format) |
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399 | 398 | |
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400 | 399 | return parmConfObj |
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401 | 400 | |
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402 | 401 | def makeXml(self, procUnitElement): |
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403 | 402 | |
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404 | 403 | opElement = SubElement(procUnitElement, self.ELEMENTNAME) |
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405 | 404 | opElement.set('id', str(self.id)) |
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406 | 405 | opElement.set('name', self.name) |
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407 | 406 | opElement.set('type', self.type) |
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408 | 407 | opElement.set('priority', str(self.priority)) |
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409 | 408 | |
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410 | 409 | for parmConfObj in self.parmConfObjList: |
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411 | 410 | parmConfObj.makeXml(opElement) |
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412 | 411 | |
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413 | 412 | def readXml(self, opElement, project_id): |
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414 | 413 | |
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415 | 414 | self.id = opElement.get('id') |
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416 | 415 | self.name = opElement.get('name') |
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417 | 416 | self.type = opElement.get('type') |
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418 | 417 | self.priority = opElement.get('priority') |
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419 | 418 | self.project_id = str(project_id) |
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420 | 419 | |
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421 | 420 | # Compatible with old signal chain version |
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422 | 421 | # Use of 'run' method instead 'init' |
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423 | 422 | if self.type == 'self' and self.name == 'init': |
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424 | 423 | self.name = 'run' |
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425 | 424 | |
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426 | 425 | self.parmConfObjList = [] |
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427 | 426 | |
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428 | 427 | parmElementList = opElement.iter(ParameterConf().getElementName()) |
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429 | 428 | |
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430 | 429 | for parmElement in parmElementList: |
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|
431 | 430 | parmConfObj = ParameterConf() |
|
|
432 | 431 | parmConfObj.readXml(parmElement) |
|
|
433 | 432 | |
|
|
434 | 433 | # Compatible with old signal chain version |
|
|
435 | 434 | # If an 'plot' OPERATION is found, changes name operation by the value of its type PARAMETER |
|
|
436 | 435 | if self.type != 'self' and self.name == 'Plot': |
|
|
437 | 436 | if parmConfObj.format == 'str' and parmConfObj.name == 'type': |
|
|
438 | 437 | self.name = parmConfObj.value |
|
|
439 | 438 | continue |
|
|
440 | 439 | |
|
|
441 | 440 | self.parmConfObjList.append(parmConfObj) |
|
|
442 | 441 | |
|
|
443 | 442 | def printattr(self): |
|
|
444 | 443 | |
|
|
445 | 444 | print('%s[%s]: name = %s, type = %s, priority = %s, project_id = %s' % (self.ELEMENTNAME, |
|
|
446 | 445 | self.id, |
|
|
447 | 446 | self.name, |
|
|
448 | 447 | self.type, |
|
|
449 | 448 | self.priority, |
|
|
450 | 449 | self.project_id)) |
|
|
451 | 450 | |
|
|
452 | 451 | for parmConfObj in self.parmConfObjList: |
|
|
453 | 452 | parmConfObj.printattr() |
|
|
454 | 453 | |
|
|
455 | 454 | def createObject(self): |
|
|
456 | 455 | |
|
|
457 | 456 | className = eval(self.name) |
|
|
458 | 457 | |
|
|
459 | 458 | if self.type == 'other': |
|
|
460 | 459 | opObj = className() |
|
|
461 | 460 | elif self.type == 'external': |
|
|
462 | 461 | kwargs = self.getKwargs() |
|
|
463 | 462 | opObj = className(self.id, self.project_id, **kwargs) |
|
|
464 | 463 | opObj.start() |
|
|
465 | 464 | |
|
|
466 | 465 | return opObj |
|
|
467 | 466 | |
|
|
468 | 467 | class ProcUnitConf(): |
|
|
469 | 468 | |
|
|
470 | 469 | ELEMENTNAME = 'ProcUnit' |
|
|
471 | 470 | |
|
|
472 | 471 | def __init__(self): |
|
|
473 | 472 | |
|
|
474 | 473 | self.id = None |
|
|
475 | 474 | self.datatype = None |
|
|
476 | 475 | self.name = None |
|
|
477 | 476 | self.inputId = None |
|
|
478 | 477 | self.opConfObjList = [] |
|
|
479 | 478 | self.procUnitObj = None |
|
|
480 | 479 | self.opObjDict = {} |
|
|
481 | 480 | |
|
|
482 | 481 | def __getPriority(self): |
|
|
483 | 482 | |
|
|
484 | 483 | return len(self.opConfObjList) + 1 |
|
|
485 | 484 | |
|
|
486 | 485 | def __getNewId(self): |
|
|
487 | 486 | |
|
|
488 | 487 | return int(self.id) * 10 + len(self.opConfObjList) + 1 |
|
|
489 | 488 | |
|
|
490 | 489 | def getElementName(self): |
|
|
491 | 490 | |
|
|
492 | 491 | return self.ELEMENTNAME |
|
|
493 | 492 | |
|
|
494 | 493 | def getId(self): |
|
|
495 | 494 | |
|
|
496 | 495 | return self.id |
|
|
497 | 496 | |
|
|
498 | 497 | def updateId(self, new_id): |
|
|
499 | 498 | ''' |
|
|
500 | 499 | new_id = int(parentId) * 10 + (int(self.id) % 10) |
|
|
501 | 500 | new_inputId = int(parentId) * 10 + (int(self.inputId) % 10) |
|
|
502 | 501 | |
|
|
503 | 502 | # If this proc unit has not inputs |
|
|
504 | 503 | #if self.inputId == '0': |
|
|
505 | 504 | #new_inputId = 0 |
|
|
506 | 505 | |
|
|
507 | 506 | n = 1 |
|
|
508 | 507 | for opConfObj in self.opConfObjList: |
|
|
509 | 508 | |
|
|
510 | 509 | idOp = str(int(new_id) * 10 + n) |
|
|
511 | 510 | opConfObj.updateId(idOp) |
|
|
512 | 511 | |
|
|
513 | 512 | n += 1 |
|
|
514 | 513 | |
|
|
515 | 514 | self.parentId = str(parentId) |
|
|
516 | 515 | self.id = str(new_id) |
|
|
517 | 516 | #self.inputId = str(new_inputId) |
|
|
518 | 517 | ''' |
|
|
519 | 518 | n = 1 |
|
|
520 | 519 | |
|
|
521 | 520 | def getInputId(self): |
|
|
522 | 521 | |
|
|
523 | 522 | return self.inputId |
|
|
524 | 523 | |
|
|
525 | 524 | def getOperationObjList(self): |
|
|
526 | 525 | |
|
|
527 | 526 | return self.opConfObjList |
|
|
528 | 527 | |
|
|
529 | 528 | def getOperationObj(self, name=None): |
|
|
530 | 529 | |
|
|
531 | 530 | for opConfObj in self.opConfObjList: |
|
|
532 | 531 | |
|
|
533 | 532 | if opConfObj.name != name: |
|
|
534 | 533 | continue |
|
|
535 | 534 | |
|
|
536 | 535 | return opConfObj |
|
|
537 | 536 | |
|
|
538 | 537 | return None |
|
|
539 | 538 | |
|
|
540 | 539 | def getOpObjfromParamValue(self, value=None): |
|
|
541 | 540 | |
|
|
542 | 541 | for opConfObj in self.opConfObjList: |
|
|
543 | 542 | if opConfObj.getParameterObjfromValue(parameterValue=value) != value: |
|
|
544 | 543 | continue |
|
|
545 | 544 | return opConfObj |
|
|
546 | 545 | return None |
|
|
547 | 546 | |
|
|
548 | 547 | def getProcUnitObj(self): |
|
|
549 | 548 | |
|
|
550 | 549 | return self.procUnitObj |
|
|
551 | 550 | |
|
|
552 | 551 | def setup(self, project_id, id, name, datatype, inputId): |
|
|
553 | 552 | ''' |
|
|
554 | 553 | id sera el topico a publicar |
|
|
555 | 554 | inputId sera el topico a subscribirse |
|
|
556 | 555 | ''' |
|
|
557 | 556 | |
|
|
558 | 557 | # Compatible with old signal chain version |
|
|
559 | 558 | if datatype == None and name == None: |
|
|
560 | 559 | raise ValueError('datatype or name should be defined') |
|
|
561 | 560 | |
|
|
562 | 561 | #Definir una condicion para inputId cuando sea 0 |
|
|
563 | 562 | |
|
|
564 | 563 | if name == None: |
|
|
565 | 564 | if 'Proc' in datatype: |
|
|
566 | 565 | name = datatype |
|
|
567 | 566 | else: |
|
|
568 | 567 | name = '%sProc' % (datatype) |
|
|
569 | 568 | |
|
|
570 | 569 | if datatype == None: |
|
|
571 | 570 | datatype = name.replace('Proc', '') |
|
|
572 | 571 | |
|
|
573 | 572 | self.id = str(id) |
|
|
574 | 573 | self.project_id = project_id |
|
|
575 | 574 | self.name = name |
|
|
576 | 575 | self.datatype = datatype |
|
|
577 | 576 | self.inputId = inputId |
|
|
578 | 577 | self.opConfObjList = [] |
|
|
579 | 578 | |
|
|
580 | 579 | self.addOperation(name='run', optype='self') |
|
|
581 | 580 | |
|
|
582 | 581 | def removeOperations(self): |
|
|
583 | 582 | |
|
|
584 | 583 | for obj in self.opConfObjList: |
|
|
585 | 584 | del obj |
|
|
586 | 585 | |
|
|
587 | 586 | self.opConfObjList = [] |
|
|
588 | 587 | self.addOperation(name='run') |
|
|
589 | 588 | |
|
|
590 | 589 | def addParameter(self, **kwargs): |
|
|
591 | 590 | ''' |
|
|
592 | 591 | Add parameters to 'run' operation |
|
|
593 | 592 | ''' |
|
|
594 | 593 | opObj = self.opConfObjList[0] |
|
|
595 | 594 | |
|
|
596 | 595 | opObj.addParameter(**kwargs) |
|
|
597 | 596 | |
|
|
598 | 597 | return opObj |
|
|
599 | 598 | |
|
|
600 | 599 | def addOperation(self, name, optype='self'): |
|
|
601 | 600 | ''' |
|
|
602 | 601 | Actualizacion - > proceso comunicacion |
|
|
603 | 602 | En el caso de optype='self', elminar. DEfinir comuncacion IPC -> Topic |
|
|
604 | 603 | definir el tipoc de socket o comunicacion ipc++ |
|
|
605 | 604 | |
|
|
606 | 605 | ''' |
|
|
607 | 606 | |
|
|
608 | 607 | id = self.__getNewId() |
|
|
609 | 608 | priority = self.__getPriority() # Sin mucho sentido, pero puede usarse |
|
|
610 | 609 | opConfObj = OperationConf() |
|
|
611 | 610 | opConfObj.setup(id, name=name, priority=priority, type=optype, project_id=self.project_id) |
|
|
612 | 611 | self.opConfObjList.append(opConfObj) |
|
|
613 | 612 | |
|
|
614 | 613 | return opConfObj |
|
|
615 | 614 | |
|
|
616 | 615 | def makeXml(self, projectElement): |
|
|
617 | 616 | |
|
|
618 | 617 | procUnitElement = SubElement(projectElement, self.ELEMENTNAME) |
|
|
619 | 618 | procUnitElement.set('id', str(self.id)) |
|
|
620 | 619 | procUnitElement.set('name', self.name) |
|
|
621 | 620 | procUnitElement.set('datatype', self.datatype) |
|
|
622 | 621 | procUnitElement.set('inputId', str(self.inputId)) |
|
|
623 | 622 | |
|
|
624 | 623 | for opConfObj in self.opConfObjList: |
|
|
625 | 624 | opConfObj.makeXml(procUnitElement) |
|
|
626 | 625 | |
|
|
627 | 626 | def readXml(self, upElement, project_id): |
|
|
628 | 627 | |
|
|
629 | 628 | self.id = upElement.get('id') |
|
|
630 | 629 | self.name = upElement.get('name') |
|
|
631 | 630 | self.datatype = upElement.get('datatype') |
|
|
632 | 631 | self.inputId = upElement.get('inputId') |
|
|
633 | 632 | self.project_id = str(project_id) |
|
|
634 | 633 | |
|
|
635 | 634 | if self.ELEMENTNAME == 'ReadUnit': |
|
|
636 | 635 | self.datatype = self.datatype.replace('Reader', '') |
|
|
637 | 636 | |
|
|
638 | 637 | if self.ELEMENTNAME == 'ProcUnit': |
|
|
639 | 638 | self.datatype = self.datatype.replace('Proc', '') |
|
|
640 | 639 | |
|
|
641 | 640 | if self.inputId == 'None': |
|
|
642 | 641 | self.inputId = '0' |
|
|
643 | 642 | |
|
|
644 | 643 | self.opConfObjList = [] |
|
|
645 | 644 | |
|
|
646 | 645 | opElementList = upElement.iter(OperationConf().getElementName()) |
|
|
647 | 646 | |
|
|
648 | 647 | for opElement in opElementList: |
|
|
649 | 648 | opConfObj = OperationConf() |
|
|
650 | 649 | opConfObj.readXml(opElement, project_id) |
|
|
651 | 650 | self.opConfObjList.append(opConfObj) |
|
|
652 | 651 | |
|
|
653 | 652 | def printattr(self): |
|
|
654 | 653 | |
|
|
655 | 654 | print('%s[%s]: name = %s, datatype = %s, inputId = %s, project_id = %s' % (self.ELEMENTNAME, |
|
|
656 | 655 | self.id, |
|
|
657 | 656 | self.name, |
|
|
658 | 657 | self.datatype, |
|
|
659 | 658 | self.inputId, |
|
|
660 | 659 | self.project_id)) |
|
|
661 | 660 | |
|
|
662 | 661 | for opConfObj in self.opConfObjList: |
|
|
663 | 662 | opConfObj.printattr() |
|
|
664 | 663 | |
|
|
665 | 664 | def getKwargs(self): |
|
|
666 | 665 | |
|
|
667 | 666 | opObj = self.opConfObjList[0] |
|
|
668 | 667 | kwargs = opObj.getKwargs() |
|
|
669 | 668 | |
|
|
670 | 669 | return kwargs |
|
|
671 | 670 | |
|
|
672 | 671 | def createObjects(self): |
|
|
673 | 672 | ''' |
|
|
674 | 673 | Instancia de unidades de procesamiento. |
|
|
675 | 674 | ''' |
|
|
676 | 675 | |
|
|
677 | 676 | className = eval(self.name) |
|
|
678 | 677 | kwargs = self.getKwargs() |
|
|
679 | 678 | procUnitObj = className(self.id, self.inputId, self.project_id, **kwargs) # necesitan saber su id y su entrada por fines de ipc |
|
|
680 | 679 | log.success('creating process...', self.name) |
|
|
681 | 680 | |
|
|
682 | 681 | for opConfObj in self.opConfObjList: |
|
|
683 | 682 | |
|
|
684 | 683 | if opConfObj.type == 'self' and opConfObj.name == 'run': |
|
|
685 | 684 | continue |
|
|
686 | 685 | elif opConfObj.type == 'self': |
|
|
687 | 686 | opObj = getattr(procUnitObj, opConfObj.name) |
|
|
688 | 687 | else: |
|
|
689 | 688 | opObj = opConfObj.createObject() |
|
|
690 | 689 | |
|
|
691 | 690 | log.success('creating operation: {}, type:{}'.format( |
|
|
692 | 691 | opConfObj.name, |
|
|
693 | 692 | opConfObj.type), self.name) |
|
|
694 | 693 | |
|
|
695 | 694 | procUnitObj.addOperation(opConfObj, opObj) |
|
|
696 | 695 | |
|
|
697 | 696 | procUnitObj.start() |
|
|
698 | 697 | self.procUnitObj = procUnitObj |
|
|
699 | 698 | |
|
|
700 | 699 | def close(self): |
|
|
701 | 700 | |
|
|
702 | 701 | for opConfObj in self.opConfObjList: |
|
|
703 | 702 | if opConfObj.type == 'self': |
|
|
704 | 703 | continue |
|
|
705 | 704 | |
|
|
706 | 705 | opObj = self.procUnitObj.getOperationObj(opConfObj.id) |
|
|
707 | 706 | opObj.close() |
|
|
708 | 707 | |
|
|
709 | 708 | self.procUnitObj.close() |
|
|
710 | 709 | |
|
|
711 | 710 | return |
|
|
712 | 711 | |
|
|
713 | 712 | |
|
|
714 | 713 | class ReadUnitConf(ProcUnitConf): |
|
|
715 | 714 | |
|
|
716 | 715 | ELEMENTNAME = 'ReadUnit' |
|
|
717 | 716 | |
|
|
718 | 717 | def __init__(self): |
|
|
719 | 718 | |
|
|
720 | 719 | self.id = None |
|
|
721 | 720 | self.datatype = None |
|
|
722 | 721 | self.name = None |
|
|
723 | 722 | self.inputId = None |
|
|
724 | 723 | self.opConfObjList = [] |
|
|
725 | 724 | |
|
|
726 | 725 | def getElementName(self): |
|
|
727 | 726 | |
|
|
728 | 727 | return self.ELEMENTNAME |
|
|
729 | 728 | |
|
|
730 | 729 | def setup(self, project_id, id, name, datatype, path='', startDate='', endDate='', |
|
|
731 | 730 | startTime='', endTime='', server=None, **kwargs): |
|
|
732 | 731 | |
|
|
733 | 732 | |
|
|
734 | 733 | ''' |
|
|
735 | 734 | *****el id del proceso sera el Topico |
|
|
736 | 735 | |
|
|
737 | 736 | Adicion de {topic}, si no esta presente -> error |
|
|
738 | 737 | kwargs deben ser trasmitidos en la instanciacion |
|
|
739 | 738 | |
|
|
740 | 739 | ''' |
|
|
741 | 740 | |
|
|
742 | 741 | # Compatible with old signal chain version |
|
|
743 | 742 | if datatype == None and name == None: |
|
|
744 | 743 | raise ValueError('datatype or name should be defined') |
|
|
745 | 744 | if name == None: |
|
|
746 | 745 | if 'Reader' in datatype: |
|
|
747 | 746 | name = datatype |
|
|
748 | 747 | datatype = name.replace('Reader','') |
|
|
749 | 748 | else: |
|
|
750 | 749 | name = '{}Reader'.format(datatype) |
|
|
751 | 750 | if datatype == None: |
|
|
752 | 751 | if 'Reader' in name: |
|
|
753 | 752 | datatype = name.replace('Reader','') |
|
|
754 | 753 | else: |
|
|
755 | 754 | datatype = name |
|
|
756 | 755 | name = '{}Reader'.format(name) |
|
|
757 | 756 | |
|
|
758 | 757 | self.id = id |
|
|
759 | 758 | self.project_id = project_id |
|
|
760 | 759 | self.name = name |
|
|
761 | 760 | self.datatype = datatype |
|
|
762 | 761 | if path != '': |
|
|
763 | 762 | self.path = os.path.abspath(path) |
|
|
764 | 763 | self.startDate = startDate |
|
|
765 | 764 | self.endDate = endDate |
|
|
766 | 765 | self.startTime = startTime |
|
|
767 | 766 | self.endTime = endTime |
|
|
768 | 767 | self.server = server |
|
|
769 | 768 | self.addRunOperation(**kwargs) |
|
|
770 | 769 | |
|
|
771 | 770 | def update(self, **kwargs): |
|
|
772 | 771 | |
|
|
773 | 772 | if 'datatype' in kwargs: |
|
|
774 | 773 | datatype = kwargs.pop('datatype') |
|
|
775 | 774 | if 'Reader' in datatype: |
|
|
776 | 775 | self.name = datatype |
|
|
777 | 776 | else: |
|
|
778 | 777 | self.name = '%sReader' % (datatype) |
|
|
779 | 778 | self.datatype = self.name.replace('Reader', '') |
|
|
780 | 779 | |
|
|
781 | 780 | attrs = ('path', 'startDate', 'endDate', |
|
|
782 | 781 | 'startTime', 'endTime') |
|
|
783 | 782 | |
|
|
784 | 783 | for attr in attrs: |
|
|
785 | 784 | if attr in kwargs: |
|
|
786 | 785 | setattr(self, attr, kwargs.pop(attr)) |
|
|
787 | 786 | |
|
|
788 | 787 | self.updateRunOperation(**kwargs) |
|
|
789 | 788 | |
|
|
790 | 789 | def removeOperations(self): |
|
|
791 | 790 | |
|
|
792 | 791 | for obj in self.opConfObjList: |
|
|
793 | 792 | del obj |
|
|
794 | 793 | |
|
|
795 | 794 | self.opConfObjList = [] |
|
|
796 | 795 | |
|
|
797 | 796 | def addRunOperation(self, **kwargs): |
|
|
798 | 797 | |
|
|
799 | 798 | opObj = self.addOperation(name='run', optype='self') |
|
|
800 | 799 | |
|
|
801 | 800 | if self.server is None: |
|
|
802 | 801 | opObj.addParameter( |
|
|
803 | 802 | name='datatype', value=self.datatype, format='str') |
|
|
804 | 803 | opObj.addParameter(name='path', value=self.path, format='str') |
|
|
805 | 804 | opObj.addParameter( |
|
|
806 | 805 | name='startDate', value=self.startDate, format='date') |
|
|
807 | 806 | opObj.addParameter( |
|
|
808 | 807 | name='endDate', value=self.endDate, format='date') |
|
|
809 | 808 | opObj.addParameter( |
|
|
810 | 809 | name='startTime', value=self.startTime, format='time') |
|
|
811 | 810 | opObj.addParameter( |
|
|
812 | 811 | name='endTime', value=self.endTime, format='time') |
|
|
813 | 812 | |
|
|
814 | 813 | for key, value in list(kwargs.items()): |
|
|
815 | 814 | opObj.addParameter(name=key, value=value, |
|
|
816 | 815 | format=type(value).__name__) |
|
|
817 | 816 | else: |
|
|
818 | 817 | opObj.addParameter(name='server', value=self.server, format='str') |
|
|
819 | 818 | |
|
|
820 | 819 | return opObj |
|
|
821 | 820 | |
|
|
822 | 821 | def updateRunOperation(self, **kwargs): |
|
|
823 | 822 | |
|
|
824 | 823 | opObj = self.getOperationObj(name='run') |
|
|
825 | 824 | opObj.removeParameters() |
|
|
826 | 825 | |
|
|
827 | 826 | opObj.addParameter(name='datatype', value=self.datatype, format='str') |
|
|
828 | 827 | opObj.addParameter(name='path', value=self.path, format='str') |
|
|
829 | 828 | opObj.addParameter( |
|
|
830 | 829 | name='startDate', value=self.startDate, format='date') |
|
|
831 | 830 | opObj.addParameter(name='endDate', value=self.endDate, format='date') |
|
|
832 | 831 | opObj.addParameter( |
|
|
833 | 832 | name='startTime', value=self.startTime, format='time') |
|
|
834 | 833 | opObj.addParameter(name='endTime', value=self.endTime, format='time') |
|
|
835 | 834 | |
|
|
836 | 835 | for key, value in list(kwargs.items()): |
|
|
837 | 836 | opObj.addParameter(name=key, value=value, |
|
|
838 | 837 | format=type(value).__name__) |
|
|
839 | 838 | |
|
|
840 | 839 | return opObj |
|
|
841 | 840 | |
|
|
842 | 841 | def readXml(self, upElement, project_id): |
|
|
843 | 842 | |
|
|
844 | 843 | self.id = upElement.get('id') |
|
|
845 | 844 | self.name = upElement.get('name') |
|
|
846 | 845 | self.datatype = upElement.get('datatype') |
|
|
847 | 846 | self.project_id = str(project_id) #yong |
|
|
848 | 847 | |
|
|
849 | 848 | if self.ELEMENTNAME == 'ReadUnit': |
|
|
850 | 849 | self.datatype = self.datatype.replace('Reader', '') |
|
|
851 | 850 | |
|
|
852 | 851 | self.opConfObjList = [] |
|
|
853 | 852 | |
|
|
854 | 853 | opElementList = upElement.iter(OperationConf().getElementName()) |
|
|
855 | 854 | |
|
|
856 | 855 | for opElement in opElementList: |
|
|
857 | 856 | opConfObj = OperationConf() |
|
|
858 | 857 | opConfObj.readXml(opElement, project_id) |
|
|
859 | 858 | self.opConfObjList.append(opConfObj) |
|
|
860 | 859 | |
|
|
861 | 860 | if opConfObj.name == 'run': |
|
|
862 | 861 | self.path = opConfObj.getParameterValue('path') |
|
|
863 | 862 | self.startDate = opConfObj.getParameterValue('startDate') |
|
|
864 | 863 | self.endDate = opConfObj.getParameterValue('endDate') |
|
|
865 | 864 | self.startTime = opConfObj.getParameterValue('startTime') |
|
|
866 | 865 | self.endTime = opConfObj.getParameterValue('endTime') |
|
|
867 | 866 | |
|
|
868 | 867 | |
|
|
869 | 868 | class Project(Process): |
|
|
870 | 869 | |
|
|
871 | 870 | ELEMENTNAME = 'Project' |
|
|
872 | 871 | |
|
|
873 | 872 | def __init__(self): |
|
|
874 | 873 | |
|
|
875 | 874 | Process.__init__(self) |
|
|
876 | 875 | self.id = None |
|
|
877 | 876 | self.filename = None |
|
|
878 | 877 | self.description = None |
|
|
879 | 878 | self.email = None |
|
|
880 | 879 | self.alarm = None |
|
|
881 | 880 | self.procUnitConfObjDict = {} |
|
|
882 | 881 | |
|
|
883 | 882 | def __getNewId(self): |
|
|
884 | 883 | |
|
|
885 | 884 | idList = list(self.procUnitConfObjDict.keys()) |
|
|
886 | 885 | id = int(self.id) * 10 |
|
|
887 | 886 | |
|
|
888 | 887 | while True: |
|
|
889 | 888 | id += 1 |
|
|
890 | 889 | |
|
|
891 | 890 | if str(id) in idList: |
|
|
892 | 891 | continue |
|
|
893 | 892 | |
|
|
894 | 893 | break |
|
|
895 | 894 | |
|
|
896 | 895 | return str(id) |
|
|
897 | 896 | |
|
|
898 | 897 | def getElementName(self): |
|
|
899 | 898 | |
|
|
900 | 899 | return self.ELEMENTNAME |
|
|
901 | 900 | |
|
|
902 | 901 | def getId(self): |
|
|
903 | 902 | |
|
|
904 | 903 | return self.id |
|
|
905 | 904 | |
|
|
906 | 905 | def updateId(self, new_id): |
|
|
907 | 906 | |
|
|
908 | 907 | self.id = str(new_id) |
|
|
909 | 908 | |
|
|
910 | 909 | keyList = list(self.procUnitConfObjDict.keys()) |
|
|
911 | 910 | keyList.sort() |
|
|
912 | 911 | |
|
|
913 | 912 | n = 1 |
|
|
914 | 913 | newProcUnitConfObjDict = {} |
|
|
915 | 914 | |
|
|
916 | 915 | for procKey in keyList: |
|
|
917 | 916 | |
|
|
918 | 917 | procUnitConfObj = self.procUnitConfObjDict[procKey] |
|
|
919 | 918 | idProcUnit = str(int(self.id) * 10 + n) |
|
|
920 | 919 | procUnitConfObj.updateId(idProcUnit) |
|
|
921 | 920 | newProcUnitConfObjDict[idProcUnit] = procUnitConfObj |
|
|
922 | 921 | n += 1 |
|
|
923 | 922 | |
|
|
924 | 923 | self.procUnitConfObjDict = newProcUnitConfObjDict |
|
|
925 | 924 | |
|
|
926 | 925 | def setup(self, id=1, name='', description='', email=None, alarm=[]): |
|
|
927 | 926 | |
|
|
928 | 927 | print(' ') |
|
|
929 | 928 | print('*' * 60) |
|
|
930 | 929 | print('* Starting SIGNAL CHAIN PROCESSING (Multiprocessing) v%s *' % schainpy.__version__) |
|
|
931 | 930 | print('*' * 60) |
|
|
932 | 931 | print("* Python " + python_version() + " *") |
|
|
933 | 932 | print('*' * 19) |
|
|
934 | 933 | print(' ') |
|
|
935 | 934 | self.id = str(id) |
|
|
936 | 935 | self.description = description |
|
|
937 | 936 | self.email = email |
|
|
938 | 937 | self.alarm = alarm |
|
|
939 | 938 | |
|
|
940 | 939 | def update(self, **kwargs): |
|
|
941 | 940 | |
|
|
942 | 941 | for key, value in list(kwargs.items()): |
|
|
943 | 942 | setattr(self, key, value) |
|
|
944 | 943 | |
|
|
945 | 944 | def clone(self): |
|
|
946 | 945 | |
|
|
947 | 946 | p = Project() |
|
|
948 | 947 | p.procUnitConfObjDict = self.procUnitConfObjDict |
|
|
949 | 948 | return p |
|
|
950 | 949 | |
|
|
951 | 950 | def addReadUnit(self, id=None, datatype=None, name=None, **kwargs): |
|
|
952 | 951 | |
|
|
953 | 952 | ''' |
|
|
954 | 953 | Actualizacion: |
|
|
955 | 954 | Se agrego un nuevo argumento: topic -relativo a la forma de comunicar los procesos simultaneos |
|
|
956 | 955 | |
|
|
957 | 956 | * El id del proceso sera el topico al que se deben subscribir los procUnits para recibir la informacion(data) |
|
|
958 | 957 | |
|
|
959 | 958 | ''' |
|
|
960 | 959 | |
|
|
961 | 960 | if id is None: |
|
|
962 | 961 | idReadUnit = self.__getNewId() |
|
|
963 | 962 | else: |
|
|
964 | 963 | idReadUnit = str(id) |
|
|
965 | 964 | |
|
|
966 | 965 | readUnitConfObj = ReadUnitConf() |
|
|
967 | 966 | readUnitConfObj.setup(self.id, idReadUnit, name, datatype, **kwargs) |
|
|
968 | 967 | self.procUnitConfObjDict[readUnitConfObj.getId()] = readUnitConfObj |
|
|
969 | 968 | |
|
|
970 | 969 | return readUnitConfObj |
|
|
971 | 970 | |
|
|
972 | 971 | def addProcUnit(self, inputId='0', datatype=None, name=None): |
|
|
973 | 972 | |
|
|
974 | 973 | ''' |
|
|
975 | 974 | Actualizacion: |
|
|
976 | 975 | Se agrego dos nuevos argumentos: topic_read (lee data de otro procUnit) y topic_write(escribe o envia data a otro procUnit) |
|
|
977 | 976 | Deberia reemplazar a "inputId" |
|
|
978 | 977 | |
|
|
979 | 978 | ** A fin de mantener el inputID, este sera la representaacion del topicoal que deben subscribirse. El ID propio de la intancia |
|
|
980 | 979 | (proceso) sera el topico de la publicacion, todo sera asignado de manera dinamica. |
|
|
981 | 980 | |
|
|
982 | 981 | ''' |
|
|
983 | 982 | |
|
|
984 | 983 | idProcUnit = self.__getNewId() #Topico para subscripcion |
|
|
985 | 984 | procUnitConfObj = ProcUnitConf() |
|
|
986 | 985 | procUnitConfObj.setup(self.id, idProcUnit, name, datatype, inputId) #topic_read, topic_write, |
|
|
987 | 986 | self.procUnitConfObjDict[procUnitConfObj.getId()] = procUnitConfObj |
|
|
988 | 987 | |
|
|
989 | 988 | return procUnitConfObj |
|
|
990 | 989 | |
|
|
991 | 990 | def removeProcUnit(self, id): |
|
|
992 | 991 | |
|
|
993 | 992 | if id in list(self.procUnitConfObjDict.keys()): |
|
|
994 | 993 | self.procUnitConfObjDict.pop(id) |
|
|
995 | 994 | |
|
|
996 | 995 | def getReadUnitId(self): |
|
|
997 | 996 | |
|
|
998 | 997 | readUnitConfObj = self.getReadUnitObj() |
|
|
999 | 998 | |
|
|
1000 | 999 | return readUnitConfObj.id |
|
|
1001 | 1000 | |
|
|
1002 | 1001 | def getReadUnitObj(self): |
|
|
1003 | 1002 | |
|
|
1004 | 1003 | for obj in list(self.procUnitConfObjDict.values()): |
|
|
1005 | 1004 | if obj.getElementName() == 'ReadUnit': |
|
|
1006 | 1005 | return obj |
|
|
1007 | 1006 | |
|
|
1008 | 1007 | return None |
|
|
1009 | 1008 | |
|
|
1010 | 1009 | def getProcUnitObj(self, id=None, name=None): |
|
|
1011 | 1010 | |
|
|
1012 | 1011 | if id != None: |
|
|
1013 | 1012 | return self.procUnitConfObjDict[id] |
|
|
1014 | 1013 | |
|
|
1015 | 1014 | if name != None: |
|
|
1016 | 1015 | return self.getProcUnitObjByName(name) |
|
|
1017 | 1016 | |
|
|
1018 | 1017 | return None |
|
|
1019 | 1018 | |
|
|
1020 | 1019 | def getProcUnitObjByName(self, name): |
|
|
1021 | 1020 | |
|
|
1022 | 1021 | for obj in list(self.procUnitConfObjDict.values()): |
|
|
1023 | 1022 | if obj.name == name: |
|
|
1024 | 1023 | return obj |
|
|
1025 | 1024 | |
|
|
1026 | 1025 | return None |
|
|
1027 | 1026 | |
|
|
1028 | 1027 | def procUnitItems(self): |
|
|
1029 | 1028 | |
|
|
1030 | 1029 | return list(self.procUnitConfObjDict.items()) |
|
|
1031 | 1030 | |
|
|
1032 | 1031 | def makeXml(self): |
|
|
1033 | 1032 | |
|
|
1034 | 1033 | projectElement = Element('Project') |
|
|
1035 | 1034 | projectElement.set('id', str(self.id)) |
|
|
1036 | 1035 | projectElement.set('name', self.name) |
|
|
1037 | 1036 | projectElement.set('description', self.description) |
|
|
1038 | 1037 | |
|
|
1039 | 1038 | for procUnitConfObj in list(self.procUnitConfObjDict.values()): |
|
|
1040 | 1039 | procUnitConfObj.makeXml(projectElement) |
|
|
1041 | 1040 | |
|
|
1042 | 1041 | self.projectElement = projectElement |
|
|
1043 | 1042 | |
|
|
1044 | 1043 | def writeXml(self, filename=None): |
|
|
1045 | 1044 | |
|
|
1046 | 1045 | if filename == None: |
|
|
1047 | 1046 | if self.filename: |
|
|
1048 | 1047 | filename = self.filename |
|
|
1049 | 1048 | else: |
|
|
1050 | 1049 | filename = 'schain.xml' |
|
|
1051 | 1050 | |
|
|
1052 | 1051 | if not filename: |
|
|
1053 | 1052 | print('filename has not been defined. Use setFilename(filename) for do it.') |
|
|
1054 | 1053 | return 0 |
|
|
1055 | 1054 | |
|
|
1056 | 1055 | abs_file = os.path.abspath(filename) |
|
|
1057 | 1056 | |
|
|
1058 | 1057 | if not os.access(os.path.dirname(abs_file), os.W_OK): |
|
|
1059 | 1058 | print('No write permission on %s' % os.path.dirname(abs_file)) |
|
|
1060 | 1059 | return 0 |
|
|
1061 | 1060 | |
|
|
1062 | 1061 | if os.path.isfile(abs_file) and not(os.access(abs_file, os.W_OK)): |
|
|
1063 | 1062 | print('File %s already exists and it could not be overwriten' % abs_file) |
|
|
1064 | 1063 | return 0 |
|
|
1065 | 1064 | |
|
|
1066 | 1065 | self.makeXml() |
|
|
1067 | 1066 | |
|
|
1068 | 1067 | ElementTree(self.projectElement).write(abs_file, method='xml') |
|
|
1069 | 1068 | |
|
|
1070 | 1069 | self.filename = abs_file |
|
|
1071 | 1070 | |
|
|
1072 | 1071 | return 1 |
|
|
1073 | 1072 | |
|
|
1074 | 1073 | def readXml(self, filename=None): |
|
|
1075 | 1074 | |
|
|
1076 | 1075 | if not filename: |
|
|
1077 | 1076 | print('filename is not defined') |
|
|
1078 | 1077 | return 0 |
|
|
1079 | 1078 | |
|
|
1080 | 1079 | abs_file = os.path.abspath(filename) |
|
|
1081 | 1080 | |
|
|
1082 | 1081 | if not os.path.isfile(abs_file): |
|
|
1083 | 1082 | print('%s file does not exist' % abs_file) |
|
|
1084 | 1083 | return 0 |
|
|
1085 | 1084 | |
|
|
1086 | 1085 | self.projectElement = None |
|
|
1087 | 1086 | self.procUnitConfObjDict = {} |
|
|
1088 | 1087 | |
|
|
1089 | 1088 | try: |
|
|
1090 | 1089 | self.projectElement = ElementTree().parse(abs_file) |
|
|
1091 | 1090 | except: |
|
|
1092 | 1091 | print('Error reading %s, verify file format' % filename) |
|
|
1093 | 1092 | return 0 |
|
|
1094 | 1093 | |
|
|
1095 | 1094 | self.project = self.projectElement.tag |
|
|
1096 | 1095 | |
|
|
1097 | 1096 | self.id = self.projectElement.get('id') |
|
|
1098 | 1097 | self.name = self.projectElement.get('name') |
|
|
1099 | 1098 | self.description = self.projectElement.get('description') |
|
|
1100 | 1099 | |
|
|
1101 | 1100 | readUnitElementList = self.projectElement.iter( |
|
|
1102 | 1101 | ReadUnitConf().getElementName()) |
|
|
1103 | 1102 | |
|
|
1104 | 1103 | for readUnitElement in readUnitElementList: |
|
|
1105 | 1104 | readUnitConfObj = ReadUnitConf() |
|
|
1106 | 1105 | readUnitConfObj.readXml(readUnitElement, self.id) |
|
|
1107 | 1106 | self.procUnitConfObjDict[readUnitConfObj.getId()] = readUnitConfObj |
|
|
1108 | 1107 | |
|
|
1109 | 1108 | procUnitElementList = self.projectElement.iter( |
|
|
1110 | 1109 | ProcUnitConf().getElementName()) |
|
|
1111 | 1110 | |
|
|
1112 | 1111 | for procUnitElement in procUnitElementList: |
|
|
1113 | 1112 | procUnitConfObj = ProcUnitConf() |
|
|
1114 | 1113 | procUnitConfObj.readXml(procUnitElement, self.id) |
|
|
1115 | 1114 | self.procUnitConfObjDict[procUnitConfObj.getId()] = procUnitConfObj |
|
|
1116 | 1115 | |
|
|
1117 | 1116 | self.filename = abs_file |
|
|
1118 | 1117 | |
|
|
1119 | 1118 | return 1 |
|
|
1120 | 1119 | |
|
|
1121 | 1120 | def __str__(self): |
|
|
1122 | 1121 | |
|
|
1123 | 1122 | print('Project[%s]: name = %s, description = %s, project_id = %s' % (self.id, |
|
|
1124 | 1123 | self.name, |
|
|
1125 | 1124 | self.description, |
|
|
1126 | 1125 | self.project_id)) |
|
|
1127 | 1126 | |
|
|
1128 | 1127 | for procUnitConfObj in self.procUnitConfObjDict.values(): |
|
|
1129 | 1128 | print(procUnitConfObj) |
|
|
1130 | 1129 | |
|
|
1131 | 1130 | def createObjects(self): |
|
|
1132 | 1131 | |
|
|
1133 | 1132 | |
|
|
1134 | 1133 | keys = list(self.procUnitConfObjDict.keys()) |
|
|
1135 | 1134 | keys.sort() |
|
|
1136 | 1135 | for key in keys: |
|
|
1137 | 1136 | self.procUnitConfObjDict[key].createObjects() |
|
|
1138 | 1137 | |
|
|
1139 | 1138 | def __handleError(self, procUnitConfObj, modes=None, stdout=True): |
|
|
1140 | 1139 | |
|
|
1141 | 1140 | import socket |
|
|
1142 | 1141 | |
|
|
1143 | 1142 | if modes is None: |
|
|
1144 | 1143 | modes = self.alarm |
|
|
1145 | 1144 | |
|
|
1146 | 1145 | if not self.alarm: |
|
|
1147 | 1146 | modes = [] |
|
|
1148 | 1147 | |
|
|
1149 | 1148 | err = traceback.format_exception(sys.exc_info()[0], |
|
|
1150 | 1149 | sys.exc_info()[1], |
|
|
1151 | 1150 | sys.exc_info()[2]) |
|
|
1152 | 1151 | |
|
|
1153 | 1152 | log.error('{}'.format(err[-1]), procUnitConfObj.name) |
|
|
1154 | 1153 | |
|
|
1155 | 1154 | message = ''.join(err) |
|
|
1156 | 1155 | |
|
|
1157 | 1156 | if stdout: |
|
|
1158 | 1157 | sys.stderr.write(message) |
|
|
1159 | 1158 | |
|
|
1160 | 1159 | subject = 'SChain v%s: Error running %s\n' % ( |
|
|
1161 | 1160 | schainpy.__version__, procUnitConfObj.name) |
|
|
1162 | 1161 | |
|
|
1163 | 1162 | subtitle = '%s: %s\n' % ( |
|
|
1164 | 1163 | procUnitConfObj.getElementName(), procUnitConfObj.name) |
|
|
1165 | 1164 | subtitle += 'Hostname: %s\n' % socket.gethostbyname( |
|
|
1166 | 1165 | socket.gethostname()) |
|
|
1167 | 1166 | subtitle += 'Working directory: %s\n' % os.path.abspath('./') |
|
|
1168 | 1167 | subtitle += 'Configuration file: %s\n' % self.filename |
|
|
1169 | 1168 | subtitle += 'Time: %s\n' % str(datetime.datetime.now()) |
|
|
1170 | 1169 | |
|
|
1171 | 1170 | readUnitConfObj = self.getReadUnitObj() |
|
|
1172 | 1171 | if readUnitConfObj: |
|
|
1173 | 1172 | subtitle += '\nInput parameters:\n' |
|
|
1174 | 1173 | subtitle += '[Data path = %s]\n' % readUnitConfObj.path |
|
|
1175 | 1174 | subtitle += '[Data type = %s]\n' % readUnitConfObj.datatype |
|
|
1176 | 1175 | subtitle += '[Start date = %s]\n' % readUnitConfObj.startDate |
|
|
1177 | 1176 | subtitle += '[End date = %s]\n' % readUnitConfObj.endDate |
|
|
1178 | 1177 | subtitle += '[Start time = %s]\n' % readUnitConfObj.startTime |
|
|
1179 | 1178 | subtitle += '[End time = %s]\n' % readUnitConfObj.endTime |
|
|
1180 | 1179 | |
|
|
1181 | 1180 | a = Alarm( |
|
|
1182 | 1181 | modes=modes, |
|
|
1183 | 1182 | email=self.email, |
|
|
1184 | 1183 | message=message, |
|
|
1185 | 1184 | subject=subject, |
|
|
1186 | 1185 | subtitle=subtitle, |
|
|
1187 | 1186 | filename=self.filename |
|
|
1188 | 1187 | ) |
|
|
1189 | 1188 | |
|
|
1190 | 1189 | return a |
|
|
1191 | 1190 | |
|
|
1192 | 1191 | def isPaused(self): |
|
|
1193 | 1192 | return 0 |
|
|
1194 | 1193 | |
|
|
1195 | 1194 | def isStopped(self): |
|
|
1196 | 1195 | return 0 |
|
|
1197 | 1196 | |
|
|
1198 | 1197 | def runController(self): |
|
|
1199 | 1198 | ''' |
|
|
1200 | 1199 | returns 0 when this process has been stopped, 1 otherwise |
|
|
1201 | 1200 | ''' |
|
|
1202 | 1201 | |
|
|
1203 | 1202 | if self.isPaused(): |
|
|
1204 | 1203 | print('Process suspended') |
|
|
1205 | 1204 | |
|
|
1206 | 1205 | while True: |
|
|
1207 | 1206 | time.sleep(0.1) |
|
|
1208 | 1207 | |
|
|
1209 | 1208 | if not self.isPaused(): |
|
|
1210 | 1209 | break |
|
|
1211 | 1210 | |
|
|
1212 | 1211 | if self.isStopped(): |
|
|
1213 | 1212 | break |
|
|
1214 | 1213 | |
|
|
1215 | 1214 | print('Process reinitialized') |
|
|
1216 | 1215 | |
|
|
1217 | 1216 | if self.isStopped(): |
|
|
1218 | 1217 | print('Process stopped') |
|
|
1219 | 1218 | return 0 |
|
|
1220 | 1219 | |
|
|
1221 | 1220 | return 1 |
|
|
1222 | 1221 | |
|
|
1223 | 1222 | def setFilename(self, filename): |
|
|
1224 | 1223 | |
|
|
1225 | 1224 | self.filename = filename |
|
|
1226 | 1225 | |
|
|
1227 | 1226 | def setProxyCom(self): |
|
|
1228 | 1227 | |
|
|
1229 | 1228 | if not os.path.exists('/tmp/schain'): |
|
|
1230 | 1229 | os.mkdir('/tmp/schain') |
|
|
1231 | 1230 | |
|
|
1232 | 1231 | self.ctx = zmq.Context() |
|
|
1233 | 1232 | xpub = self.ctx.socket(zmq.XPUB) |
|
|
1234 | 1233 | xpub.bind('ipc:///tmp/schain/{}_pub'.format(self.id)) |
|
|
1235 | 1234 | xsub = self.ctx.socket(zmq.XSUB) |
|
|
1236 | 1235 | xsub.bind('ipc:///tmp/schain/{}_sub'.format(self.id)) |
|
|
1237 | 1236 | |
|
|
1238 | 1237 | try: |
|
|
1239 | 1238 | zmq.proxy(xpub, xsub) |
|
|
1240 | 1239 | except: # zmq.ContextTerminated: |
|
|
1241 | 1240 | xpub.close() |
|
|
1242 | 1241 | xsub.close() |
|
|
1243 | 1242 | |
|
|
1244 | 1243 | def run(self): |
|
|
1245 | 1244 | |
|
|
1246 | 1245 | log.success('Starting {}: {}'.format(self.name, self.id), tag='') |
|
|
1247 | 1246 | self.start_time = time.time() |
|
|
1248 | 1247 | self.createObjects() |
|
|
1249 | 1248 | # t = Thread(target=wait, args=(self.ctx, )) |
|
|
1250 | 1249 | # t.start() |
|
|
1251 | 1250 | self.setProxyCom() |
|
|
1252 | 1251 | |
|
|
1253 | 1252 | # Iniciar todos los procesos .start(), monitoreo de procesos. ELiminar lo de abajo |
|
|
1254 | 1253 | |
|
|
1255 | 1254 | log.success('{} Done (time: {}s)'.format( |
|
|
1256 | 1255 | self.name, |
|
|
1257 | 1256 | time.time()-self.start_time)) |
| @@ -1,803 +1,800 | |||
|
|
1 | 1 | |
|
|
2 | 2 | import os |
|
|
3 | 3 | import sys |
|
|
4 | 4 | import zmq |
|
|
5 | 5 | import time |
|
|
6 | 6 | import datetime |
|
|
7 | 7 | from functools import wraps |
|
|
8 | 8 | import numpy |
|
|
9 | 9 | import matplotlib |
|
|
10 | 10 | |
|
|
11 | 11 | if 'BACKEND' in os.environ: |
|
|
12 | 12 | matplotlib.use(os.environ['BACKEND']) |
|
|
13 | 13 | elif 'linux' in sys.platform: |
|
|
14 | 14 | matplotlib.use("TkAgg") |
|
|
15 | 15 | elif 'darwin' in sys.platform: |
|
|
16 | 16 | matplotlib.use('TkAgg') |
|
|
17 | 17 | else: |
|
|
18 | 18 | from schainpy.utils import log |
|
|
19 | 19 | log.warning('Using default Backend="Agg"', 'INFO') |
|
|
20 | 20 | matplotlib.use('Agg') |
|
|
21 | 21 | |
|
|
22 | 22 | import matplotlib.pyplot as plt |
|
|
23 | 23 | from matplotlib.patches import Polygon |
|
|
24 | 24 | from mpl_toolkits.axes_grid1 import make_axes_locatable |
|
|
25 | 25 | from matplotlib.ticker import FuncFormatter, LinearLocator, MultipleLocator |
|
|
26 | 26 | |
|
|
27 | 27 | from schainpy.model.data.jrodata import PlotterData |
|
|
28 | 28 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator |
|
|
29 | 29 | from schainpy.utils import log |
|
|
30 | 30 | |
|
|
31 | 31 | jet_values = matplotlib.pyplot.get_cmap('jet', 100)(numpy.arange(100))[10:90] |
|
|
32 | 32 | blu_values = matplotlib.pyplot.get_cmap( |
|
|
33 | 33 | 'seismic_r', 20)(numpy.arange(20))[10:15] |
|
|
34 | 34 | ncmap = matplotlib.colors.LinearSegmentedColormap.from_list( |
|
|
35 | 35 | 'jro', numpy.vstack((blu_values, jet_values))) |
|
|
36 | 36 | matplotlib.pyplot.register_cmap(cmap=ncmap) |
|
|
37 | 37 | |
|
|
38 | 38 | CMAPS = [plt.get_cmap(s) for s in ('jro', 'jet', 'viridis', |
|
|
39 | 39 | 'plasma', 'inferno', 'Greys', 'seismic', 'bwr', 'coolwarm')] |
|
|
40 | 40 | |
|
|
41 | 41 | EARTH_RADIUS = 6.3710e3 |
|
|
42 | 42 | |
|
|
43 | 43 | |
|
|
44 | 44 | def ll2xy(lat1, lon1, lat2, lon2): |
|
|
45 | 45 | |
|
|
46 | 46 | p = 0.017453292519943295 |
|
|
47 | 47 | a = 0.5 - numpy.cos((lat2 - lat1) * p)/2 + numpy.cos(lat1 * p) * \ |
|
|
48 | 48 | numpy.cos(lat2 * p) * (1 - numpy.cos((lon2 - lon1) * p)) / 2 |
|
|
49 | 49 | r = 12742 * numpy.arcsin(numpy.sqrt(a)) |
|
|
50 | 50 | theta = numpy.arctan2(numpy.sin((lon2-lon1)*p)*numpy.cos(lat2*p), numpy.cos(lat1*p) |
|
|
51 | 51 | * numpy.sin(lat2*p)-numpy.sin(lat1*p)*numpy.cos(lat2*p)*numpy.cos((lon2-lon1)*p)) |
|
|
52 | 52 | theta = -theta + numpy.pi/2 |
|
|
53 | 53 | return r*numpy.cos(theta), r*numpy.sin(theta) |
|
|
54 | 54 | |
|
|
55 | 55 | |
|
|
56 | 56 | def km2deg(km): |
|
|
57 | 57 | ''' |
|
|
58 | 58 | Convert distance in km to degrees |
|
|
59 | 59 | ''' |
|
|
60 | 60 | |
|
|
61 | 61 | return numpy.rad2deg(km/EARTH_RADIUS) |
|
|
62 | 62 | |
|
|
63 | 63 | |
|
|
64 | 64 | def figpause(interval): |
|
|
65 | 65 | backend = plt.rcParams['backend'] |
|
|
66 | 66 | if backend in matplotlib.rcsetup.interactive_bk: |
|
|
67 | 67 | figManager = matplotlib._pylab_helpers.Gcf.get_active() |
|
|
68 | 68 | if figManager is not None: |
|
|
69 | 69 | canvas = figManager.canvas |
|
|
70 | 70 | if canvas.figure.stale: |
|
|
71 | 71 | canvas.draw() |
|
|
72 | 72 | try: |
|
|
73 | 73 | canvas.start_event_loop(interval) |
|
|
74 | 74 | except: |
|
|
75 | 75 | pass |
|
|
76 | 76 | return |
|
|
77 | 77 | |
|
|
78 | 78 | |
|
|
79 | 79 | def popup(message): |
|
|
80 | 80 | ''' |
|
|
81 | 81 | ''' |
|
|
82 | 82 | |
|
|
83 | 83 | fig = plt.figure(figsize=(12, 8), facecolor='r') |
|
|
84 | 84 | text = '\n'.join([s.strip() for s in message.split(':')]) |
|
|
85 | 85 | fig.text(0.01, 0.5, text, ha='left', va='center', |
|
|
86 | 86 | size='20', weight='heavy', color='w') |
|
|
87 | 87 | fig.show() |
|
|
88 | 88 | figpause(1000) |
|
|
89 | 89 | |
|
|
90 | 90 | |
|
|
91 | 91 | class Throttle(object): |
|
|
92 | 92 | ''' |
|
|
93 | 93 | Decorator that prevents a function from being called more than once every |
|
|
94 | 94 | time period. |
|
|
95 | 95 | To create a function that cannot be called more than once a minute, but |
|
|
96 | 96 | will sleep until it can be called: |
|
|
97 | 97 | @Throttle(minutes=1) |
|
|
98 | 98 | def foo(): |
|
|
99 | 99 | pass |
|
|
100 | 100 | |
|
|
101 | 101 | for i in range(10): |
|
|
102 | 102 | foo() |
|
|
103 | 103 | print "This function has run %s times." % i |
|
|
104 | 104 | ''' |
|
|
105 | 105 | |
|
|
106 | 106 | def __init__(self, seconds=0, minutes=0, hours=0): |
|
|
107 | 107 | self.throttle_period = datetime.timedelta( |
|
|
108 | 108 | seconds=seconds, minutes=minutes, hours=hours |
|
|
109 | 109 | ) |
|
|
110 | 110 | |
|
|
111 | 111 | self.time_of_last_call = datetime.datetime.min |
|
|
112 | 112 | |
|
|
113 | 113 | def __call__(self, fn): |
|
|
114 | 114 | @wraps(fn) |
|
|
115 | 115 | def wrapper(*args, **kwargs): |
|
|
116 | 116 | coerce = kwargs.pop('coerce', None) |
|
|
117 | 117 | if coerce: |
|
|
118 | 118 | self.time_of_last_call = datetime.datetime.now() |
|
|
119 | 119 | return fn(*args, **kwargs) |
|
|
120 | 120 | else: |
|
|
121 | 121 | now = datetime.datetime.now() |
|
|
122 | 122 | time_since_last_call = now - self.time_of_last_call |
|
|
123 | 123 | time_left = self.throttle_period - time_since_last_call |
|
|
124 | 124 | |
|
|
125 | 125 | if time_left > datetime.timedelta(seconds=0): |
|
|
126 | 126 | return |
|
|
127 | 127 | |
|
|
128 | 128 | self.time_of_last_call = datetime.datetime.now() |
|
|
129 | 129 | return fn(*args, **kwargs) |
|
|
130 | 130 | |
|
|
131 | 131 | return wrapper |
|
|
132 | 132 | |
|
|
133 | 133 | def apply_throttle(value): |
|
|
134 | 134 | |
|
|
135 | 135 | @Throttle(seconds=value) |
|
|
136 | 136 | def fnThrottled(fn): |
|
|
137 | 137 | fn() |
|
|
138 | 138 | |
|
|
139 | 139 | return fnThrottled |
|
|
140 | 140 | |
|
|
141 | 141 | @MPDecorator |
|
|
142 | 142 | class Plotter(ProcessingUnit): |
|
|
143 | 143 | ''' |
|
|
144 | 144 | Proccessing unit to handle plot operations |
|
|
145 | 145 | ''' |
|
|
146 | 146 | |
|
|
147 | 147 | def __init__(self): |
|
|
148 | 148 | |
|
|
149 | 149 | ProcessingUnit.__init__(self) |
|
|
150 | 150 | |
|
|
151 | 151 | def setup(self, **kwargs): |
|
|
152 | 152 | |
|
|
153 | 153 | self.connections = 0 |
|
|
154 | 154 | self.web_address = kwargs.get('web_server', False) |
|
|
155 | 155 | self.realtime = kwargs.get('realtime', False) |
|
|
156 | 156 | self.localtime = kwargs.get('localtime', True) |
|
|
157 | 157 | self.buffering = kwargs.get('buffering', True) |
|
|
158 | 158 | self.throttle = kwargs.get('throttle', 2) |
|
|
159 | 159 | self.exp_code = kwargs.get('exp_code', None) |
|
|
160 | 160 | self.set_ready = apply_throttle(self.throttle) |
|
|
161 | 161 | self.dates = [] |
|
|
162 | 162 | self.data = PlotterData( |
|
|
163 | 163 | self.plots, self.throttle, self.exp_code, self.buffering) |
|
|
164 | 164 | self.isConfig = True |
|
|
165 | 165 | |
|
|
166 | 166 | def ready(self): |
|
|
167 | 167 | ''' |
|
|
168 | 168 | Set dataOut ready |
|
|
169 | 169 | ''' |
|
|
170 | 170 | |
|
|
171 | 171 | self.data.ready = True |
|
|
172 | 172 | self.dataOut.data_plt = self.data |
|
|
173 | 173 | |
|
|
174 | 174 | def run(self, realtime=True, localtime=True, buffering=True, |
|
|
175 | 175 | throttle=2, exp_code=None, web_server=None): |
|
|
176 | 176 | |
|
|
177 | 177 | if not self.isConfig: |
|
|
178 | 178 | self.setup(realtime=realtime, localtime=localtime, |
|
|
179 | 179 | buffering=buffering, throttle=throttle, exp_code=exp_code, |
|
|
180 | 180 | web_server=web_server) |
|
|
181 | 181 | |
|
|
182 | 182 | if self.web_address: |
|
|
183 | 183 | log.success( |
|
|
184 | 184 | 'Sending to web: {}'.format(self.web_address), |
|
|
185 | 185 | self.name |
|
|
186 | 186 | ) |
|
|
187 | 187 | self.context = zmq.Context() |
|
|
188 | 188 | self.sender_web = self.context.socket(zmq.REQ) |
|
|
189 | 189 | self.sender_web.connect(self.web_address) |
|
|
190 | 190 | self.poll = zmq.Poller() |
|
|
191 | 191 | self.poll.register(self.sender_web, zmq.POLLIN) |
|
|
192 | 192 | time.sleep(1) |
|
|
193 | 193 | |
|
|
194 | 194 | # t = Thread(target=self.event_monitor, args=(monitor,)) |
|
|
195 | 195 | # t.start() |
|
|
196 | 196 | |
|
|
197 | 197 | self.dataOut = self.dataIn |
|
|
198 | 198 | self.data.ready = False |
|
|
199 | 199 | |
|
|
200 | 200 | if self.dataOut.flagNoData: |
|
|
201 | 201 | coerce = True |
|
|
202 | 202 | else: |
|
|
203 | 203 | coerce = False |
|
|
204 | 204 | |
|
|
205 | 205 | if self.dataOut.type == 'Parameters': |
|
|
206 | 206 | tm = self.dataOut.utctimeInit |
|
|
207 | 207 | else: |
|
|
208 | 208 | tm = self.dataOut.utctime |
|
|
209 | 209 | if self.dataOut.useLocalTime: |
|
|
210 | 210 | if not self.localtime: |
|
|
211 | 211 | tm += time.timezone |
|
|
212 | 212 | dt = datetime.datetime.fromtimestamp(tm).date() |
|
|
213 | 213 | else: |
|
|
214 | 214 | if self.localtime: |
|
|
215 | 215 | tm -= time.timezone |
|
|
216 | 216 | dt = datetime.datetime.utcfromtimestamp(tm).date() |
|
|
217 | 217 | if dt not in self.dates: |
|
|
218 | 218 | if self.data: |
|
|
219 | 219 | self.ready() |
|
|
220 | 220 | self.data.setup() |
|
|
221 | 221 | self.dates.append(dt) |
|
|
222 | 222 | |
|
|
223 | 223 | self.data.update(self.dataOut, tm) |
|
|
224 | 224 | |
|
|
225 | 225 | if False: # TODO check when publishers ends |
|
|
226 | 226 | self.connections -= 1 |
|
|
227 | 227 | if self.connections == 0 and dt in self.dates: |
|
|
228 | 228 | self.data.ended = True |
|
|
229 | 229 | self.ready() |
|
|
230 | 230 | time.sleep(1) |
|
|
231 | 231 | else: |
|
|
232 | 232 | if self.realtime: |
|
|
233 | 233 | self.ready() |
|
|
234 | 234 | if self.web_address: |
|
|
235 | 235 | retries = 5 |
|
|
236 | 236 | while True: |
|
|
237 | 237 | self.sender_web.send(self.data.jsonify()) |
|
|
238 | 238 | socks = dict(self.poll.poll(5000)) |
|
|
239 | 239 | if socks.get(self.sender_web) == zmq.POLLIN: |
|
|
240 | 240 | reply = self.sender_web.recv_string() |
|
|
241 | 241 | if reply == 'ok': |
|
|
242 | 242 | log.log("Response from server ok", self.name) |
|
|
243 | 243 | break |
|
|
244 | 244 | else: |
|
|
245 | 245 | log.warning( |
|
|
246 | 246 | "Malformed reply from server: {}".format(reply), self.name) |
|
|
247 | 247 | |
|
|
248 | 248 | else: |
|
|
249 | 249 | log.warning( |
|
|
250 | 250 | "No response from server, retrying...", self.name) |
|
|
251 | 251 | self.sender_web.setsockopt(zmq.LINGER, 0) |
|
|
252 | 252 | self.sender_web.close() |
|
|
253 | 253 | self.poll.unregister(self.sender_web) |
|
|
254 | 254 | retries -= 1 |
|
|
255 | 255 | if retries == 0: |
|
|
256 | 256 | log.error( |
|
|
257 | 257 | "Server seems to be offline, abandoning", self.name) |
|
|
258 | 258 | self.sender_web = self.context.socket(zmq.REQ) |
|
|
259 | 259 | self.sender_web.connect(self.web_address) |
|
|
260 | 260 | self.poll.register(self.sender_web, zmq.POLLIN) |
|
|
261 | 261 | time.sleep(1) |
|
|
262 | 262 | break |
|
|
263 | 263 | self.sender_web = self.context.socket(zmq.REQ) |
|
|
264 | 264 | self.sender_web.connect(self.web_address) |
|
|
265 | 265 | self.poll.register(self.sender_web, zmq.POLLIN) |
|
|
266 | 266 | time.sleep(1) |
|
|
267 | 267 | else: |
|
|
268 | 268 | self.set_ready(self.ready, coerce=coerce) |
|
|
269 | 269 | |
|
|
270 | 270 | return |
|
|
271 | 271 | |
|
|
272 | 272 | def close(self): |
|
|
273 | 273 | pass |
|
|
274 | 274 | |
|
|
275 | 275 | |
|
|
276 | 276 | @MPDecorator |
|
|
277 | 277 | class Plot(Operation): |
|
|
278 | 278 | ''' |
|
|
279 | 279 | Base class for Schain plotting operations |
|
|
280 | 280 | ''' |
|
|
281 | 281 | |
|
|
282 | 282 | CODE = 'Figure' |
|
|
283 | 283 | colormap = 'jro' |
|
|
284 | 284 | bgcolor = 'white' |
|
|
285 | 285 | __missing = 1E30 |
|
|
286 | 286 | |
|
|
287 | 287 | __attrs__ = ['show', 'save', 'xmin', 'xmax', 'ymin', 'ymax', 'zmin', 'zmax', |
|
|
288 | 288 | 'zlimits', 'xlabel', 'ylabel', 'xaxis', 'cb_label', 'title', |
|
|
289 | 289 | 'colorbar', 'bgcolor', 'width', 'height', 'localtime', 'oneFigure', |
|
|
290 | 290 | 'showprofile', 'decimation', 'pause'] |
|
|
291 | 291 | |
|
|
292 | 292 | def __init__(self): |
|
|
293 | 293 | |
|
|
294 | 294 | Operation.__init__(self) |
|
|
295 | 295 | self.isConfig = False |
|
|
296 | 296 | self.isPlotConfig = False |
|
|
297 | 297 | |
|
|
298 | 298 | def __fmtTime(self, x, pos): |
|
|
299 | 299 | ''' |
|
|
300 | 300 | ''' |
|
|
301 | 301 | |
|
|
302 | 302 | return '{}'.format(self.getDateTime(x).strftime('%H:%M')) |
|
|
303 | 303 | |
|
|
304 | 304 | def __setup(self, **kwargs): |
|
|
305 | 305 | ''' |
|
|
306 | 306 | Initialize variables |
|
|
307 | 307 | ''' |
|
|
308 | 308 | |
|
|
309 | 309 | self.figures = [] |
|
|
310 | 310 | self.axes = [] |
|
|
311 | 311 | self.cb_axes = [] |
|
|
312 | 312 | self.localtime = kwargs.pop('localtime', True) |
|
|
313 | 313 | self.show = kwargs.get('show', True) |
|
|
314 | 314 | self.save = kwargs.get('save', False) |
|
|
315 | 315 | self.ftp = kwargs.get('ftp', False) |
|
|
316 | 316 | self.colormap = kwargs.get('colormap', self.colormap) |
|
|
317 | 317 | self.colormap_coh = kwargs.get('colormap_coh', 'jet') |
|
|
318 | 318 | self.colormap_phase = kwargs.get('colormap_phase', 'RdBu_r') |
|
|
319 | 319 | self.colormaps = kwargs.get('colormaps', None) |
|
|
320 | 320 | self.bgcolor = kwargs.get('bgcolor', self.bgcolor) |
|
|
321 | 321 | self.showprofile = kwargs.get('showprofile', False) |
|
|
322 | 322 | self.title = kwargs.get('wintitle', self.CODE.upper()) |
|
|
323 | 323 | self.cb_label = kwargs.get('cb_label', None) |
|
|
324 | 324 | self.cb_labels = kwargs.get('cb_labels', None) |
|
|
325 | 325 | self.labels = kwargs.get('labels', None) |
|
|
326 | 326 | self.xaxis = kwargs.get('xaxis', 'frequency') |
|
|
327 | 327 | self.zmin = kwargs.get('zmin', None) |
|
|
328 | 328 | self.zmax = kwargs.get('zmax', None) |
|
|
329 | 329 | self.zlimits = kwargs.get('zlimits', None) |
|
|
330 | 330 | self.xmin = kwargs.get('xmin', None) |
|
|
331 | 331 | self.xmax = kwargs.get('xmax', None) |
|
|
332 | 332 | self.xrange = kwargs.get('xrange', 12) |
|
|
333 | 333 | self.xscale = kwargs.get('xscale', None) |
|
|
334 | 334 | self.ymin = kwargs.get('ymin', None) |
|
|
335 | 335 | self.ymax = kwargs.get('ymax', None) |
|
|
336 | 336 | self.yscale = kwargs.get('yscale', None) |
|
|
337 | 337 | self.xlabel = kwargs.get('xlabel', None) |
|
|
338 | 338 | self.decimation = kwargs.get('decimation', None) |
|
|
339 | 339 | self.showSNR = kwargs.get('showSNR', False) |
|
|
340 | 340 | self.oneFigure = kwargs.get('oneFigure', True) |
|
|
341 | 341 | self.width = kwargs.get('width', None) |
|
|
342 | 342 | self.height = kwargs.get('height', None) |
|
|
343 | 343 | self.colorbar = kwargs.get('colorbar', True) |
|
|
344 | 344 | self.factors = kwargs.get('factors', [1, 1, 1, 1, 1, 1, 1, 1]) |
|
|
345 | 345 | self.channels = kwargs.get('channels', None) |
|
|
346 | 346 | self.titles = kwargs.get('titles', []) |
|
|
347 | 347 | self.polar = False |
|
|
348 | 348 | self.grid = kwargs.get('grid', False) |
|
|
349 | 349 | self.pause = kwargs.get('pause', False) |
|
|
350 | 350 | self.save_labels = kwargs.get('save_labels', None) |
|
|
351 | 351 | self.realtime = kwargs.get('realtime', True) |
|
|
352 | 352 | self.buffering = kwargs.get('buffering', True) |
|
|
353 | 353 | self.throttle = kwargs.get('throttle', 2) |
|
|
354 | 354 | self.exp_code = kwargs.get('exp_code', None) |
|
|
355 | 355 | self.__throttle_plot = apply_throttle(self.throttle) |
|
|
356 | 356 | self.data = PlotterData( |
|
|
357 | 357 | self.CODE, self.throttle, self.exp_code, self.buffering) |
|
|
358 | 358 | |
|
|
359 | 359 | def __setup_plot(self): |
|
|
360 | 360 | ''' |
|
|
361 | 361 | Common setup for all figures, here figures and axes are created |
|
|
362 | 362 | ''' |
|
|
363 | 363 | |
|
|
364 | 364 | self.setup() |
|
|
365 | 365 | |
|
|
366 | 366 | self.time_label = 'LT' if self.localtime else 'UTC' |
|
|
367 | 367 | if self.data.localtime: |
|
|
368 | 368 | self.getDateTime = datetime.datetime.fromtimestamp |
|
|
369 | 369 | else: |
|
|
370 | 370 | self.getDateTime = datetime.datetime.utcfromtimestamp |
|
|
371 | 371 | |
|
|
372 | 372 | if self.width is None: |
|
|
373 | 373 | self.width = 8 |
|
|
374 | 374 | |
|
|
375 | 375 | self.figures = [] |
|
|
376 | 376 | self.axes = [] |
|
|
377 | 377 | self.cb_axes = [] |
|
|
378 | 378 | self.pf_axes = [] |
|
|
379 | 379 | self.cmaps = [] |
|
|
380 | 380 | |
|
|
381 | 381 | size = '15%' if self.ncols == 1 else '30%' |
|
|
382 | 382 | pad = '4%' if self.ncols == 1 else '8%' |
|
|
383 | 383 | |
|
|
384 | 384 | if self.oneFigure: |
|
|
385 | 385 | if self.height is None: |
|
|
386 | 386 | self.height = 1.4 * self.nrows + 1 |
|
|
387 | 387 | fig = plt.figure(figsize=(self.width, self.height), |
|
|
388 | 388 | edgecolor='k', |
|
|
389 | 389 | facecolor='w') |
|
|
390 | 390 | self.figures.append(fig) |
|
|
391 | 391 | for n in range(self.nplots): |
|
|
392 | 392 | ax = fig.add_subplot(self.nrows, self.ncols, |
|
|
393 | 393 | n + 1, polar=self.polar) |
|
|
394 | 394 | ax.tick_params(labelsize=8) |
|
|
395 | 395 | ax.firsttime = True |
|
|
396 | 396 | ax.index = 0 |
|
|
397 | 397 | ax.press = None |
|
|
398 | 398 | self.axes.append(ax) |
|
|
399 | 399 | if self.showprofile: |
|
|
400 | 400 | cax = self.__add_axes(ax, size=size, pad=pad) |
|
|
401 | 401 | cax.tick_params(labelsize=8) |
|
|
402 | 402 | self.pf_axes.append(cax) |
|
|
403 | 403 | else: |
|
|
404 | 404 | if self.height is None: |
|
|
405 | 405 | self.height = 3 |
|
|
406 | 406 | for n in range(self.nplots): |
|
|
407 | 407 | fig = plt.figure(figsize=(self.width, self.height), |
|
|
408 | 408 | edgecolor='k', |
|
|
409 | 409 | facecolor='w') |
|
|
410 | 410 | ax = fig.add_subplot(1, 1, 1, polar=self.polar) |
|
|
411 | 411 | ax.tick_params(labelsize=8) |
|
|
412 | 412 | ax.firsttime = True |
|
|
413 | 413 | ax.index = 0 |
|
|
414 | 414 | ax.press = None |
|
|
415 | 415 | self.figures.append(fig) |
|
|
416 | 416 | self.axes.append(ax) |
|
|
417 | 417 | if self.showprofile: |
|
|
418 | 418 | cax = self.__add_axes(ax, size=size, pad=pad) |
|
|
419 | 419 | cax.tick_params(labelsize=8) |
|
|
420 | 420 | self.pf_axes.append(cax) |
|
|
421 | 421 | |
|
|
422 | 422 | for n in range(self.nrows): |
|
|
423 | 423 | if self.colormaps is not None: |
|
|
424 | 424 | cmap = plt.get_cmap(self.colormaps[n]) |
|
|
425 | 425 | else: |
|
|
426 | 426 | cmap = plt.get_cmap(self.colormap) |
|
|
427 | 427 | cmap.set_bad(self.bgcolor, 1.) |
|
|
428 | 428 | self.cmaps.append(cmap) |
|
|
429 | 429 | |
|
|
430 | 430 | for fig in self.figures: |
|
|
431 | 431 | fig.canvas.mpl_connect('key_press_event', self.OnKeyPress) |
|
|
432 | 432 | fig.canvas.mpl_connect('scroll_event', self.OnBtnScroll) |
|
|
433 | 433 | fig.canvas.mpl_connect('button_press_event', self.onBtnPress) |
|
|
434 | 434 | fig.canvas.mpl_connect('motion_notify_event', self.onMotion) |
|
|
435 | 435 | fig.canvas.mpl_connect('button_release_event', self.onBtnRelease) |
|
|
436 | 436 | if self.show: |
|
|
437 | 437 | fig.show() |
|
|
438 | 438 | |
|
|
439 | 439 | def OnKeyPress(self, event): |
|
|
440 | 440 | ''' |
|
|
441 | 441 | Event for pressing keys (up, down) change colormap |
|
|
442 | 442 | ''' |
|
|
443 | 443 | ax = event.inaxes |
|
|
444 | 444 | if ax in self.axes: |
|
|
445 | 445 | if event.key == 'down': |
|
|
446 | 446 | ax.index += 1 |
|
|
447 | 447 | elif event.key == 'up': |
|
|
448 | 448 | ax.index -= 1 |
|
|
449 | 449 | if ax.index < 0: |
|
|
450 | 450 | ax.index = len(CMAPS) - 1 |
|
|
451 | 451 | elif ax.index == len(CMAPS): |
|
|
452 | 452 | ax.index = 0 |
|
|
453 | 453 | cmap = CMAPS[ax.index] |
|
|
454 | 454 | ax.cbar.set_cmap(cmap) |
|
|
455 | 455 | ax.cbar.draw_all() |
|
|
456 | 456 | ax.plt.set_cmap(cmap) |
|
|
457 | 457 | ax.cbar.patch.figure.canvas.draw() |
|
|
458 | 458 | self.colormap = cmap.name |
|
|
459 | 459 | |
|
|
460 | 460 | def OnBtnScroll(self, event): |
|
|
461 | 461 | ''' |
|
|
462 | 462 | Event for scrolling, scale figure |
|
|
463 | 463 | ''' |
|
|
464 | 464 | cb_ax = event.inaxes |
|
|
465 | 465 | if cb_ax in [ax.cbar.ax for ax in self.axes if ax.cbar]: |
|
|
466 | 466 | ax = [ax for ax in self.axes if cb_ax == ax.cbar.ax][0] |
|
|
467 | 467 | pt = ax.cbar.ax.bbox.get_points()[:, 1] |
|
|
468 | 468 | nrm = ax.cbar.norm |
|
|
469 | 469 | vmin, vmax, p0, p1, pS = ( |
|
|
470 | 470 | nrm.vmin, nrm.vmax, pt[0], pt[1], event.y) |
|
|
471 | 471 | scale = 2 if event.step == 1 else 0.5 |
|
|
472 | 472 | point = vmin + (vmax - vmin) / (p1 - p0) * (pS - p0) |
|
|
473 | 473 | ax.cbar.norm.vmin = point - scale * (point - vmin) |
|
|
474 | 474 | ax.cbar.norm.vmax = point - scale * (point - vmax) |
|
|
475 | 475 | ax.plt.set_norm(ax.cbar.norm) |
|
|
476 | 476 | ax.cbar.draw_all() |
|
|
477 | 477 | ax.cbar.patch.figure.canvas.draw() |
|
|
478 | 478 | |
|
|
479 | 479 | def onBtnPress(self, event): |
|
|
480 | 480 | ''' |
|
|
481 | 481 | Event for mouse button press |
|
|
482 | 482 | ''' |
|
|
483 | 483 | cb_ax = event.inaxes |
|
|
484 | 484 | if cb_ax is None: |
|
|
485 | 485 | return |
|
|
486 | 486 | |
|
|
487 | 487 | if cb_ax in [ax.cbar.ax for ax in self.axes if ax.cbar]: |
|
|
488 | 488 | cb_ax.press = event.x, event.y |
|
|
489 | 489 | else: |
|
|
490 | 490 | cb_ax.press = None |
|
|
491 | 491 | |
|
|
492 | 492 | def onMotion(self, event): |
|
|
493 | 493 | ''' |
|
|
494 | 494 | Event for move inside colorbar |
|
|
495 | 495 | ''' |
|
|
496 | 496 | cb_ax = event.inaxes |
|
|
497 | 497 | if cb_ax is None: |
|
|
498 | 498 | return |
|
|
499 | 499 | if cb_ax not in [ax.cbar.ax for ax in self.axes if ax.cbar]: |
|
|
500 | 500 | return |
|
|
501 | 501 | if cb_ax.press is None: |
|
|
502 | 502 | return |
|
|
503 | 503 | |
|
|
504 | 504 | ax = [ax for ax in self.axes if cb_ax == ax.cbar.ax][0] |
|
|
505 | 505 | xprev, yprev = cb_ax.press |
|
|
506 | 506 | dx = event.x - xprev |
|
|
507 | 507 | dy = event.y - yprev |
|
|
508 | 508 | cb_ax.press = event.x, event.y |
|
|
509 | 509 | scale = ax.cbar.norm.vmax - ax.cbar.norm.vmin |
|
|
510 | 510 | perc = 0.03 |
|
|
511 | 511 | |
|
|
512 | 512 | if event.button == 1: |
|
|
513 | 513 | ax.cbar.norm.vmin -= (perc * scale) * numpy.sign(dy) |
|
|
514 | 514 | ax.cbar.norm.vmax -= (perc * scale) * numpy.sign(dy) |
|
|
515 | 515 | elif event.button == 3: |
|
|
516 | 516 | ax.cbar.norm.vmin -= (perc * scale) * numpy.sign(dy) |
|
|
517 | 517 | ax.cbar.norm.vmax += (perc * scale) * numpy.sign(dy) |
|
|
518 | 518 | |
|
|
519 | 519 | ax.cbar.draw_all() |
|
|
520 | 520 | ax.plt.set_norm(ax.cbar.norm) |
|
|
521 | 521 | ax.cbar.patch.figure.canvas.draw() |
|
|
522 | 522 | |
|
|
523 | 523 | def onBtnRelease(self, event): |
|
|
524 | 524 | ''' |
|
|
525 | 525 | Event for mouse button release |
|
|
526 | 526 | ''' |
|
|
527 | 527 | cb_ax = event.inaxes |
|
|
528 | 528 | if cb_ax is not None: |
|
|
529 | 529 | cb_ax.press = None |
|
|
530 | 530 | |
|
|
531 | 531 | def __add_axes(self, ax, size='30%', pad='8%'): |
|
|
532 | 532 | ''' |
|
|
533 | 533 | Add new axes to the given figure |
|
|
534 | 534 | ''' |
|
|
535 | 535 | divider = make_axes_locatable(ax) |
|
|
536 | 536 | nax = divider.new_horizontal(size=size, pad=pad) |
|
|
537 | 537 | ax.figure.add_axes(nax) |
|
|
538 | 538 | return nax |
|
|
539 | 539 | |
|
|
540 | 540 | def setup(self): |
|
|
541 | 541 | ''' |
|
|
542 | 542 | This method should be implemented in the child class, the following |
|
|
543 | 543 | attributes should be set: |
|
|
544 | 544 | |
|
|
545 | 545 | self.nrows: number of rows |
|
|
546 | 546 | self.ncols: number of cols |
|
|
547 | 547 | self.nplots: number of plots (channels or pairs) |
|
|
548 | 548 | self.ylabel: label for Y axes |
|
|
549 | 549 | self.titles: list of axes title |
|
|
550 | 550 | |
|
|
551 | 551 | ''' |
|
|
552 | 552 | raise NotImplementedError |
|
|
553 | 553 | |
|
|
554 | 554 | def fill_gaps(self, x_buffer, y_buffer, z_buffer): |
|
|
555 | 555 | ''' |
|
|
556 | 556 | Create a masked array for missing data |
|
|
557 | 557 | ''' |
|
|
558 | 558 | if x_buffer.shape[0] < 2: |
|
|
559 | 559 | return x_buffer, y_buffer, z_buffer |
|
|
560 | 560 | |
|
|
561 | 561 | deltas = x_buffer[1:] - x_buffer[0:-1] |
|
|
562 | 562 | x_median = numpy.median(deltas) |
|
|
563 | 563 | |
|
|
564 | 564 | index = numpy.where(deltas > 5 * x_median) |
|
|
565 | 565 | |
|
|
566 | 566 | if len(index[0]) != 0: |
|
|
567 | 567 | z_buffer[::, index[0], ::] = self.__missing |
|
|
568 | 568 | z_buffer = numpy.ma.masked_inside(z_buffer, |
|
|
569 | 569 | 0.99 * self.__missing, |
|
|
570 | 570 | 1.01 * self.__missing) |
|
|
571 | 571 | |
|
|
572 | 572 | return x_buffer, y_buffer, z_buffer |
|
|
573 | 573 | |
|
|
574 | 574 | def decimate(self): |
|
|
575 | 575 | |
|
|
576 | 576 | # dx = int(len(self.x)/self.__MAXNUMX) + 1 |
|
|
577 | 577 | dy = int(len(self.y) / self.decimation) + 1 |
|
|
578 | 578 | |
|
|
579 | 579 | # x = self.x[::dx] |
|
|
580 | 580 | x = self.x |
|
|
581 | 581 | y = self.y[::dy] |
|
|
582 | 582 | z = self.z[::, ::, ::dy] |
|
|
583 | 583 | |
|
|
584 | 584 | return x, y, z |
|
|
585 | 585 | |
|
|
586 | 586 | def format(self): |
|
|
587 | 587 | ''' |
|
|
588 | 588 | Set min and max values, labels, ticks and titles |
|
|
589 | 589 | ''' |
|
|
590 | 590 | |
|
|
591 | 591 | if self.xmin is None: |
|
|
592 | 592 | xmin = self.data.min_time |
|
|
593 | 593 | else: |
|
|
594 | 594 | if self.xaxis is 'time': |
|
|
595 | 595 | dt = self.getDateTime(self.data.min_time) |
|
|
596 | 596 | xmin = (dt.replace(hour=int(self.xmin), minute=0, second=0) - |
|
|
597 | 597 | datetime.datetime(1970, 1, 1)).total_seconds() |
|
|
598 | 598 | if self.data.localtime: |
|
|
599 | 599 | xmin += time.timezone |
|
|
600 | 600 | else: |
|
|
601 | 601 | xmin = self.xmin |
|
|
602 | 602 | |
|
|
603 | 603 | if self.xmax is None: |
|
|
604 | 604 | xmax = xmin + self.xrange * 60 * 60 |
|
|
605 | 605 | else: |
|
|
606 | 606 | if self.xaxis is 'time': |
|
|
607 | 607 | dt = self.getDateTime(self.data.max_time) |
|
|
608 | 608 | xmax = (dt.replace(hour=int(self.xmax), minute=59, second=59) - |
|
|
609 | 609 | datetime.datetime(1970, 1, 1) + datetime.timedelta(seconds=1)).total_seconds() |
|
|
610 | 610 | if self.data.localtime: |
|
|
611 | 611 | xmax += time.timezone |
|
|
612 | 612 | else: |
|
|
613 | 613 | xmax = self.xmax |
|
|
614 | 614 | |
|
|
615 | 615 | ymin = self.ymin if self.ymin else numpy.nanmin(self.y) |
|
|
616 | 616 | ymax = self.ymax if self.ymax else numpy.nanmax(self.y) |
|
|
617 | 617 | |
|
|
618 | 618 | Y = numpy.array([1, 2, 5, 10, 20, 50, 100, 200, 500, 1000, 2000, 5000]) |
|
|
619 | 619 | i = 1 if numpy.where( |
|
|
620 | 620 | abs(ymax-ymin) <= Y)[0][0] < 0 else numpy.where(abs(ymax-ymin) <= Y)[0][0] |
|
|
621 | 621 | ystep = Y[i] / 10. |
|
|
622 | 622 | |
|
|
623 | 623 | if self.xaxis is not 'time': |
|
|
624 | 624 | X = numpy.array([1, 2, 5, 10, 20, 50, 100, |
|
|
625 | 625 | 200, 500, 1000, 2000, 5000])/2. |
|
|
626 | 626 | i = 1 if numpy.where( |
|
|
627 | 627 | abs(xmax-xmin) <= X)[0][0] < 0 else numpy.where(abs(xmax-xmin) <= X)[0][0] |
|
|
628 | 628 | xstep = X[i] / 10. |
|
|
629 | 629 | |
|
|
630 | 630 | for n, ax in enumerate(self.axes): |
|
|
631 | 631 | if ax.firsttime: |
|
|
632 | 632 | ax.set_facecolor(self.bgcolor) |
|
|
633 | 633 | ax.yaxis.set_major_locator(MultipleLocator(ystep)) |
|
|
634 | 634 | if self.xscale: |
|
|
635 | 635 | ax.xaxis.set_major_formatter(FuncFormatter( |
|
|
636 | 636 | lambda x, pos: '{0:g}'.format(x*self.xscale))) |
|
|
637 | 637 | if self.xscale: |
|
|
638 | 638 | ax.yaxis.set_major_formatter(FuncFormatter( |
|
|
639 | 639 | lambda x, pos: '{0:g}'.format(x*self.yscale))) |
|
|
640 | 640 | if self.xaxis is 'time': |
|
|
641 | 641 | ax.xaxis.set_major_formatter(FuncFormatter(self.__fmtTime)) |
|
|
642 | 642 | ax.xaxis.set_major_locator(LinearLocator(9)) |
|
|
643 | 643 | else: |
|
|
644 | 644 | ax.xaxis.set_major_locator(MultipleLocator(xstep)) |
|
|
645 | 645 | if self.xlabel is not None: |
|
|
646 | 646 | ax.set_xlabel(self.xlabel) |
|
|
647 | 647 | ax.set_ylabel(self.ylabel) |
|
|
648 | 648 | ax.firsttime = False |
|
|
649 | 649 | if self.showprofile: |
|
|
650 | 650 | self.pf_axes[n].set_ylim(ymin, ymax) |
|
|
651 | 651 | self.pf_axes[n].set_xlim(self.zmin, self.zmax) |
|
|
652 | 652 | self.pf_axes[n].set_xlabel('dB') |
|
|
653 | 653 | self.pf_axes[n].grid(b=True, axis='x') |
|
|
654 | 654 | [tick.set_visible(False) |
|
|
655 | 655 | for tick in self.pf_axes[n].get_yticklabels()] |
|
|
656 | 656 | if self.colorbar: |
|
|
657 | 657 | ax.cbar = plt.colorbar( |
|
|
658 | 658 | ax.plt, ax=ax, fraction=0.05, pad=0.02, aspect=10) |
|
|
659 | 659 | ax.cbar.ax.tick_params(labelsize=8) |
|
|
660 | 660 | ax.cbar.ax.press = None |
|
|
661 | 661 | if self.cb_label: |
|
|
662 | 662 | ax.cbar.set_label(self.cb_label, size=8) |
|
|
663 | 663 | elif self.cb_labels: |
|
|
664 | 664 | ax.cbar.set_label(self.cb_labels[n], size=8) |
|
|
665 | 665 | else: |
|
|
666 | 666 | ax.cbar = None |
|
|
667 | 667 | if self.grid: |
|
|
668 | 668 | ax.grid(True) |
|
|
669 | 669 | |
|
|
670 | 670 | if not self.polar: |
|
|
671 | 671 | ax.set_xlim(xmin, xmax) |
|
|
672 | 672 | ax.set_ylim(ymin, ymax) |
|
|
673 | 673 | ax.set_title('{} {} {}'.format( |
|
|
674 | 674 | self.titles[n], |
|
|
675 | 675 | self.getDateTime(self.data.max_time).strftime( |
|
|
676 | 676 | '%Y-%m-%dT%H:%M:%S'), |
|
|
677 | 677 | self.time_label), |
|
|
678 | 678 | size=8) |
|
|
679 | 679 | else: |
|
|
680 | 680 | ax.set_title('{}'.format(self.titles[n]), size=8) |
|
|
681 | 681 | ax.set_ylim(0, 90) |
|
|
682 | 682 | ax.set_yticks(numpy.arange(0, 90, 20)) |
|
|
683 | 683 | ax.yaxis.labelpad = 40 |
|
|
684 | 684 | |
|
|
685 | 685 | def clear_figures(self): |
|
|
686 | 686 | ''' |
|
|
687 | 687 | Reset axes for redraw plots |
|
|
688 | 688 | ''' |
|
|
689 | 689 | |
|
|
690 | 690 | for ax in self.axes: |
|
|
691 | 691 | ax.clear() |
|
|
692 | 692 | ax.firsttime = True |
|
|
693 | 693 | if ax.cbar: |
|
|
694 | 694 | ax.cbar.remove() |
|
|
695 | 695 | |
|
|
696 | 696 | def __plot(self): |
|
|
697 | 697 | ''' |
|
|
698 | 698 | Main function to plot, format and save figures |
|
|
699 | 699 | ''' |
|
|
700 | 700 | |
|
|
701 | 701 | #try: |
|
|
702 | 702 | self.plot() |
|
|
703 | 703 | self.format() |
|
|
704 | 704 | #except Exception as e: |
|
|
705 | 705 | # log.warning('{} Plot could not be updated... check data'.format( |
|
|
706 | 706 | # self.CODE), self.name) |
|
|
707 | 707 | # log.error(str(e), '') |
|
|
708 | 708 | # return |
|
|
709 | 709 | |
|
|
710 | 710 | for n, fig in enumerate(self.figures): |
|
|
711 | 711 | if self.nrows == 0 or self.nplots == 0: |
|
|
712 | 712 | log.warning('No data', self.name) |
|
|
713 | 713 | fig.text(0.5, 0.5, 'No Data', fontsize='large', ha='center') |
|
|
714 | 714 | fig.canvas.manager.set_window_title(self.CODE) |
|
|
715 | 715 | continue |
|
|
716 | 716 | |
|
|
717 | 717 | fig.tight_layout() |
|
|
718 | 718 | fig.canvas.manager.set_window_title('{} - {}'.format(self.title, |
|
|
719 | 719 | self.getDateTime(self.data.max_time).strftime('%Y/%m/%d'))) |
|
|
720 | 720 | fig.canvas.draw() |
|
|
721 | 721 | |
|
|
722 | 722 | if self.save: |
|
|
723 | 723 | |
|
|
724 | 724 | if self.save_labels: |
|
|
725 | 725 | labels = self.save_labels |
|
|
726 | 726 | else: |
|
|
727 | 727 | labels = list(range(self.nrows)) |
|
|
728 | 728 | |
|
|
729 | 729 | if self.oneFigure: |
|
|
730 | 730 | label = '' |
|
|
731 | 731 | else: |
|
|
732 | 732 | label = '-{}'.format(labels[n]) |
|
|
733 | 733 | figname = os.path.join( |
|
|
734 | 734 | self.save, |
|
|
735 | 735 | self.CODE, |
|
|
736 | 736 | '{}{}_{}.png'.format( |
|
|
737 | 737 | self.CODE, |
|
|
738 | 738 | label, |
|
|
739 | 739 | self.getDateTime(self.data.max_time).strftime( |
|
|
740 | 740 | '%Y%m%d_%H%M%S'), |
|
|
741 | 741 | ) |
|
|
742 | 742 | ) |
|
|
743 | 743 | log.log('Saving figure: {}'.format(figname), self.name) |
|
|
744 | 744 | if not os.path.isdir(os.path.dirname(figname)): |
|
|
745 | 745 | os.makedirs(os.path.dirname(figname)) |
|
|
746 | 746 | fig.savefig(figname) |
|
|
747 | 747 | |
|
|
748 | 748 | def plot(self): |
|
|
749 | 749 | ''' |
|
|
750 | 750 | Must be defined in the child class |
|
|
751 | 751 | ''' |
|
|
752 | 752 | raise NotImplementedError |
|
|
753 | 753 | |
|
|
754 | 754 | def run(self, dataOut, **kwargs): |
|
|
755 | 755 | |
|
|
756 | if dataOut.flagNoData and not dataOut.error: | |
|
|
757 | return dataOut | |
|
|
758 | ||
|
|
759 | 756 | if dataOut.error: |
|
|
760 | 757 | coerce = True |
|
|
761 | 758 | else: |
|
|
762 | 759 | coerce = False |
|
|
763 | 760 | |
|
|
764 | 761 | if self.isConfig is False: |
|
|
765 | 762 | self.__setup(**kwargs) |
|
|
766 | 763 | self.data.setup() |
|
|
767 | 764 | self.isConfig = True |
|
|
768 | 765 | |
|
|
769 | 766 | if dataOut.type == 'Parameters': |
|
|
770 | 767 | tm = dataOut.utctimeInit |
|
|
771 | 768 | else: |
|
|
772 | 769 | tm = dataOut.utctime |
|
|
773 | 770 | |
|
|
774 | 771 | if dataOut.useLocalTime: |
|
|
775 | 772 | if not self.localtime: |
|
|
776 | 773 | tm += time.timezone |
|
|
777 | 774 | else: |
|
|
778 | 775 | if self.localtime: |
|
|
779 | 776 | tm -= time.timezone |
|
|
780 | 777 | |
|
|
781 | 778 | if self.data and (tm - self.data.min_time) >= self.xrange*60*60: |
|
|
782 | 779 | self.__plot() |
|
|
783 | 780 | self.data.setup() |
|
|
784 | 781 | self.clear_figures() |
|
|
785 | 782 | |
|
|
786 | 783 | self.data.update(dataOut, tm) |
|
|
787 | 784 | |
|
|
788 | 785 | if self.isPlotConfig is False: |
|
|
789 | 786 | self.__setup_plot() |
|
|
790 | 787 | self.isPlotConfig = True |
|
|
791 | 788 | |
|
|
792 | 789 | if self.realtime: |
|
|
793 | 790 | self.__plot() |
|
|
794 | 791 | else: |
|
|
795 | 792 | self.__throttle_plot(self.__plot, coerce=coerce) |
|
|
796 | 793 | |
|
|
797 | 794 | figpause(0.001) |
|
|
798 | 795 | |
|
|
799 | 796 | def close(self): |
|
|
800 | 797 | |
|
|
801 | 798 | if self.data and self.pause: |
|
|
802 | 799 | figpause(10) |
|
|
803 | 800 | |
| @@ -1,368 +1,368 | |||
|
|
1 | 1 | ''' |
|
|
2 | 2 | Created on Nov 9, 2016 |
|
|
3 | 3 | |
|
|
4 | 4 | @author: roj- LouVD |
|
|
5 | 5 | ''' |
|
|
6 | 6 | |
|
|
7 | 7 | |
|
|
8 | 8 | import os |
|
|
9 | 9 | import sys |
|
|
10 | 10 | import time |
|
|
11 | 11 | import glob |
|
|
12 | 12 | import datetime |
|
|
13 | 13 | |
|
|
14 | 14 | import numpy |
|
|
15 | 15 | |
|
|
16 | 16 | from schainpy.model.proc.jroproc_base import ProcessingUnit, MPDecorator |
|
|
17 | 17 | from schainpy.model.data.jrodata import Parameters |
|
|
18 | 18 | from schainpy.model.io.jroIO_base import JRODataReader, isNumber |
|
|
19 | 19 | from schainpy.utils import log |
|
|
20 | 20 | |
|
|
21 | 21 | FILE_HEADER_STRUCTURE = numpy.dtype([ |
|
|
22 | 22 | ('FMN', '<u4'), |
|
|
23 | 23 | ('nrec', '<u4'), |
|
|
24 | 24 | ('fr_offset', '<u4'), |
|
|
25 | 25 | ('id', '<u4'), |
|
|
26 | 26 | ('site', 'u1', (32,)) |
|
|
27 | 27 | ]) |
|
|
28 | 28 | |
|
|
29 | 29 | REC_HEADER_STRUCTURE = numpy.dtype([ |
|
|
30 | 30 | ('rmn', '<u4'), |
|
|
31 | 31 | ('rcounter', '<u4'), |
|
|
32 | 32 | ('nr_offset', '<u4'), |
|
|
33 | 33 | ('tr_offset', '<u4'), |
|
|
34 | 34 | ('time', '<u4'), |
|
|
35 | 35 | ('time_msec', '<u4'), |
|
|
36 | 36 | ('tag', 'u1', (32,)), |
|
|
37 | 37 | ('comments', 'u1', (32,)), |
|
|
38 | 38 | ('lat', '<f4'), |
|
|
39 | 39 | ('lon', '<f4'), |
|
|
40 | 40 | ('gps_status', '<u4'), |
|
|
41 | 41 | ('freq', '<u4'), |
|
|
42 | 42 | ('freq0', '<u4'), |
|
|
43 | 43 | ('nchan', '<u4'), |
|
|
44 | 44 | ('delta_r', '<u4'), |
|
|
45 | 45 | ('nranges', '<u4'), |
|
|
46 | 46 | ('r0', '<u4'), |
|
|
47 | 47 | ('prf', '<u4'), |
|
|
48 | 48 | ('ncoh', '<u4'), |
|
|
49 | 49 | ('npoints', '<u4'), |
|
|
50 | 50 | ('polarization', '<i4'), |
|
|
51 | 51 | ('rx_filter', '<u4'), |
|
|
52 | 52 | ('nmodes', '<u4'), |
|
|
53 | 53 | ('dmode_index', '<u4'), |
|
|
54 | 54 | ('dmode_rngcorr', '<u4'), |
|
|
55 | 55 | ('nrxs', '<u4'), |
|
|
56 | 56 | ('acf_length', '<u4'), |
|
|
57 | 57 | ('acf_lags', '<u4'), |
|
|
58 | 58 | ('sea_to_atmos', '<f4'), |
|
|
59 | 59 | ('sea_notch', '<u4'), |
|
|
60 | 60 | ('lh_sea', '<u4'), |
|
|
61 | 61 | ('hh_sea', '<u4'), |
|
|
62 | 62 | ('nbins_sea', '<u4'), |
|
|
63 | 63 | ('min_snr', '<f4'), |
|
|
64 | 64 | ('min_cc', '<f4'), |
|
|
65 | 65 | ('max_time_diff', '<f4') |
|
|
66 | 66 | ]) |
|
|
67 | 67 | |
|
|
68 | 68 | DATA_STRUCTURE = numpy.dtype([ |
|
|
69 | 69 | ('range', '<u4'), |
|
|
70 | 70 | ('status', '<u4'), |
|
|
71 | 71 | ('zonal', '<f4'), |
|
|
72 | 72 | ('meridional', '<f4'), |
|
|
73 | 73 | ('vertical', '<f4'), |
|
|
74 | 74 | ('zonal_a', '<f4'), |
|
|
75 | 75 | ('meridional_a', '<f4'), |
|
|
76 | 76 | ('corrected_fading', '<f4'), # seconds |
|
|
77 | 77 | ('uncorrected_fading', '<f4'), # seconds |
|
|
78 | 78 | ('time_diff', '<f4'), |
|
|
79 | 79 | ('major_axis', '<f4'), |
|
|
80 | 80 | ('axial_ratio', '<f4'), |
|
|
81 | 81 | ('orientation', '<f4'), |
|
|
82 | 82 | ('sea_power', '<u4'), |
|
|
83 | 83 | ('sea_algorithm', '<u4') |
|
|
84 | 84 | ]) |
|
|
85 | 85 | |
|
|
86 | 86 | @MPDecorator |
|
|
87 | 87 | class BLTRParamReader(JRODataReader, ProcessingUnit): |
|
|
88 | 88 | ''' |
|
|
89 | 89 | Boundary Layer and Tropospheric Radar (BLTR) reader, Wind velocities and SNR from *.sswma files |
|
|
90 | 90 | ''' |
|
|
91 | 91 | |
|
|
92 | 92 | ext = '.sswma' |
|
|
93 | 93 | |
|
|
94 | 94 | def __init__(self): |
|
|
95 | 95 | |
|
|
96 | 96 | ProcessingUnit.__init__(self) |
|
|
97 | 97 | |
|
|
98 | 98 | self.dataOut = Parameters() |
|
|
99 | 99 | self.counter_records = 0 |
|
|
100 | 100 | self.flagNoMoreFiles = 0 |
|
|
101 | 101 | self.isConfig = False |
|
|
102 | 102 | self.filename = None |
|
|
103 | 103 | |
|
|
104 | 104 | def setup(self, |
|
|
105 | 105 | path=None, |
|
|
106 | 106 | startDate=None, |
|
|
107 | 107 | endDate=None, |
|
|
108 | 108 | ext=None, |
|
|
109 | 109 | startTime=datetime.time(0, 0, 0), |
|
|
110 | 110 | endTime=datetime.time(23, 59, 59), |
|
|
111 | 111 | timezone=0, |
|
|
112 | 112 | status_value=0, |
|
|
113 | 113 | **kwargs): |
|
|
114 | 114 | self.path = path |
|
|
115 | 115 | self.startDate = startDate |
|
|
116 | 116 | self.endDate = endDate |
|
|
117 | 117 | self.startTime = startTime |
|
|
118 | 118 | self.endTime = endTime |
|
|
119 | 119 | self.status_value = status_value |
|
|
120 | 120 | self.datatime = datetime.datetime(1900,1,1) |
|
|
121 | 121 | |
|
|
122 | 122 | if self.path is None: |
|
|
123 | 123 | raise ValueError("The path is not valid") |
|
|
124 | 124 | |
|
|
125 | 125 | if ext is None: |
|
|
126 | 126 | ext = self.ext |
|
|
127 | 127 | |
|
|
128 | 128 | self.search_files(self.path, startDate, endDate, ext) |
|
|
129 | 129 | self.timezone = timezone |
|
|
130 | 130 | self.fileIndex = 0 |
|
|
131 | 131 | |
|
|
132 | 132 | if not self.fileList: |
|
|
133 | 133 | raise Warning("There is no files matching these date in the folder: %s. \n Check 'startDate' and 'endDate' " % ( |
|
|
134 | 134 | path)) |
|
|
135 | 135 | |
|
|
136 | 136 | self.setNextFile() |
|
|
137 | 137 | |
|
|
138 | 138 | def search_files(self, path, startDate, endDate, ext): |
|
|
139 | 139 | ''' |
|
|
140 | 140 | Searching for BLTR rawdata file in path |
|
|
141 | 141 | Creating a list of file to proces included in [startDate,endDate] |
|
|
142 | 142 | |
|
|
143 | 143 | Input: |
|
|
144 | 144 | path - Path to find BLTR rawdata files |
|
|
145 | 145 | startDate - Select file from this date |
|
|
146 | 146 | enDate - Select file until this date |
|
|
147 | 147 | ext - Extension of the file to read |
|
|
148 | 148 | ''' |
|
|
149 | 149 | |
|
|
150 | 150 | log.success('Searching files in {} '.format(path), 'BLTRParamReader') |
|
|
151 | 151 | foldercounter = 0 |
|
|
152 | 152 | fileList0 = glob.glob1(path, "*%s" % ext) |
|
|
153 | 153 | fileList0.sort() |
|
|
154 | 154 | |
|
|
155 | 155 | self.fileList = [] |
|
|
156 | 156 | self.dateFileList = [] |
|
|
157 | 157 | |
|
|
158 | 158 | for thisFile in fileList0: |
|
|
159 | 159 | year = thisFile[-14:-10] |
|
|
160 | 160 | if not isNumber(year): |
|
|
161 | 161 | continue |
|
|
162 | 162 | |
|
|
163 | 163 | month = thisFile[-10:-8] |
|
|
164 | 164 | if not isNumber(month): |
|
|
165 | 165 | continue |
|
|
166 | 166 | |
|
|
167 | 167 | day = thisFile[-8:-6] |
|
|
168 | 168 | if not isNumber(day): |
|
|
169 | 169 | continue |
|
|
170 | 170 | |
|
|
171 | 171 | year, month, day = int(year), int(month), int(day) |
|
|
172 | 172 | dateFile = datetime.date(year, month, day) |
|
|
173 | 173 | |
|
|
174 | 174 | if (startDate > dateFile) or (endDate < dateFile): |
|
|
175 | 175 | continue |
|
|
176 | 176 | |
|
|
177 | 177 | self.fileList.append(thisFile) |
|
|
178 | 178 | self.dateFileList.append(dateFile) |
|
|
179 | 179 | |
|
|
180 | 180 | return |
|
|
181 | 181 | |
|
|
182 | 182 | def setNextFile(self): |
|
|
183 | 183 | |
|
|
184 | 184 | file_id = self.fileIndex |
|
|
185 | 185 | |
|
|
186 | 186 | if file_id == len(self.fileList): |
|
|
187 | 187 | self.flagNoMoreFiles = 1 |
|
|
188 | 188 | return 0 |
|
|
189 | 189 | |
|
|
190 | 190 | log.success('Opening {}'.format(self.fileList[file_id]), 'BLTRParamReader') |
|
|
191 | 191 | filename = os.path.join(self.path, self.fileList[file_id]) |
|
|
192 | 192 | |
|
|
193 | 193 | dirname, name = os.path.split(filename) |
|
|
194 | 194 | # 'peru2' ---> Piura - 'peru1' ---> Huancayo or Porcuya |
|
|
195 | 195 | self.siteFile = name.split('.')[0] |
|
|
196 | 196 | if self.filename is not None: |
|
|
197 | 197 | self.fp.close() |
|
|
198 | 198 | self.filename = filename |
|
|
199 | 199 | self.fp = open(self.filename, 'rb') |
|
|
200 | 200 | self.header_file = numpy.fromfile(self.fp, FILE_HEADER_STRUCTURE, 1) |
|
|
201 | 201 | self.nrecords = self.header_file['nrec'][0] |
|
|
202 | 202 | self.sizeOfFile = os.path.getsize(self.filename) |
|
|
203 | 203 | self.counter_records = 0 |
|
|
204 | 204 | self.flagIsNewFile = 0 |
|
|
205 | 205 | self.fileIndex += 1 |
|
|
206 | 206 | |
|
|
207 | 207 | return 1 |
|
|
208 | 208 | |
|
|
209 | 209 | def readNextBlock(self): |
|
|
210 | 210 | |
|
|
211 | 211 | while True: |
|
|
212 | 212 | if self.counter_records == self.nrecords: |
|
|
213 | 213 | self.flagIsNewFile = 1 |
|
|
214 | 214 | if not self.setNextFile(): |
|
|
215 | 215 | return 0 |
|
|
216 | 216 | |
|
|
217 | 217 | self.readBlock() |
|
|
218 | 218 | |
|
|
219 | 219 | if (self.datatime < datetime.datetime.combine(self.startDate, self.startTime)) or \ |
|
|
220 | 220 | (self.datatime > datetime.datetime.combine(self.endDate, self.endTime)): |
|
|
221 | 221 | log.warning( |
|
|
222 | 222 | 'Reading Record No. {}/{} -> {} [Skipping]'.format( |
|
|
223 | 223 | self.counter_records, |
|
|
224 | 224 | self.nrecords, |
|
|
225 | 225 | self.datatime.ctime()), |
|
|
226 | 226 | 'BLTRParamReader') |
|
|
227 | 227 | continue |
|
|
228 | 228 | break |
|
|
229 | 229 | |
|
|
230 | 230 | log.log('Reading Record No. {}/{} -> {}'.format( |
|
|
231 | 231 | self.counter_records, |
|
|
232 | 232 | self.nrecords, |
|
|
233 | 233 | self.datatime.ctime()), 'BLTRParamReader') |
|
|
234 | 234 | |
|
|
235 | 235 | return 1 |
|
|
236 | 236 | |
|
|
237 | 237 | def readBlock(self): |
|
|
238 | 238 | |
|
|
239 | 239 | pointer = self.fp.tell() |
|
|
240 | 240 | header_rec = numpy.fromfile(self.fp, REC_HEADER_STRUCTURE, 1) |
|
|
241 | 241 | self.nchannels = int(header_rec['nchan'][0] / 2) |
|
|
242 | 242 | self.kchan = header_rec['nrxs'][0] |
|
|
243 | 243 | self.nmodes = header_rec['nmodes'][0] |
|
|
244 | 244 | self.nranges = header_rec['nranges'][0] |
|
|
245 | 245 | self.fp.seek(pointer) |
|
|
246 | 246 | self.height = numpy.empty((self.nmodes, self.nranges)) |
|
|
247 | 247 | self.snr = numpy.empty((self.nmodes, int(self.nchannels), self.nranges)) |
|
|
248 | 248 | self.buffer = numpy.empty((self.nmodes, 3, self.nranges)) |
|
|
249 | 249 | self.flagDiscontinuousBlock = 0 |
|
|
250 | 250 | |
|
|
251 | 251 | for mode in range(self.nmodes): |
|
|
252 | 252 | self.readHeader() |
|
|
253 | 253 | data = self.readData() |
|
|
254 | 254 | self.height[mode] = (data[0] - self.correction) / 1000. |
|
|
255 | 255 | self.buffer[mode] = data[1] |
|
|
256 | 256 | self.snr[mode] = data[2] |
|
|
257 | 257 | |
|
|
258 | 258 | self.counter_records = self.counter_records + self.nmodes |
|
|
259 | 259 | |
|
|
260 | 260 | return |
|
|
261 | 261 | |
|
|
262 | 262 | def readHeader(self): |
|
|
263 | 263 | ''' |
|
|
264 | 264 | RecordHeader of BLTR rawdata file |
|
|
265 | 265 | ''' |
|
|
266 | 266 | |
|
|
267 | 267 | header_structure = numpy.dtype( |
|
|
268 | 268 | REC_HEADER_STRUCTURE.descr + [ |
|
|
269 | 269 | ('antenna_coord', 'f4', (2, int(self.nchannels))), |
|
|
270 | 270 | ('rx_gains', 'u4', (int(self.nchannels),)), |
|
|
271 | 271 | ('rx_analysis', 'u4', (int(self.nchannels),)) |
|
|
272 | 272 | ] |
|
|
273 | 273 | ) |
|
|
274 | 274 | |
|
|
275 | 275 | self.header_rec = numpy.fromfile(self.fp, header_structure, 1) |
|
|
276 | 276 | self.lat = self.header_rec['lat'][0] |
|
|
277 | 277 | self.lon = self.header_rec['lon'][0] |
|
|
278 | 278 | self.delta = self.header_rec['delta_r'][0] |
|
|
279 | 279 | self.correction = self.header_rec['dmode_rngcorr'][0] |
|
|
280 | 280 | self.imode = self.header_rec['dmode_index'][0] |
|
|
281 | 281 | self.antenna = self.header_rec['antenna_coord'] |
|
|
282 | 282 | self.rx_gains = self.header_rec['rx_gains'] |
|
|
283 | 283 | self.time = self.header_rec['time'][0] |
|
|
284 | 284 | dt = datetime.datetime.utcfromtimestamp(self.time) |
|
|
285 | 285 | if dt.date()>self.datatime.date(): |
|
|
286 | 286 | self.flagDiscontinuousBlock = 1 |
|
|
287 | 287 | self.datatime = dt |
|
|
288 | 288 | |
|
|
289 | 289 | def readData(self): |
|
|
290 | 290 | ''' |
|
|
291 | 291 | Reading and filtering data block record of BLTR rawdata file, filtering is according to status_value. |
|
|
292 | 292 | |
|
|
293 | 293 | Input: |
|
|
294 | 294 | status_value - Array data is set to NAN for values that are not equal to status_value |
|
|
295 | 295 | |
|
|
296 | 296 | ''' |
|
|
297 | 297 | self.nchannels = int(self.nchannels) |
|
|
298 | 298 | |
|
|
299 | 299 | data_structure = numpy.dtype( |
|
|
300 | 300 | DATA_STRUCTURE.descr + [ |
|
|
301 | 301 | ('rx_saturation', 'u4', (self.nchannels,)), |
|
|
302 | 302 | ('chan_offset', 'u4', (2 * self.nchannels,)), |
|
|
303 | 303 | ('rx_amp', 'u4', (self.nchannels,)), |
|
|
304 | 304 | ('rx_snr', 'f4', (self.nchannels,)), |
|
|
305 | 305 | ('cross_snr', 'f4', (self.kchan,)), |
|
|
306 | 306 | ('sea_power_relative', 'f4', (self.kchan,))] |
|
|
307 | 307 | ) |
|
|
308 | 308 | |
|
|
309 | 309 | data = numpy.fromfile(self.fp, data_structure, self.nranges) |
|
|
310 | 310 | |
|
|
311 | 311 | height = data['range'] |
|
|
312 | 312 | winds = numpy.array( |
|
|
313 | 313 | (data['zonal'], data['meridional'], data['vertical'])) |
|
|
314 | 314 | snr = data['rx_snr'].T |
|
|
315 | 315 | |
|
|
316 | 316 | winds[numpy.where(winds == -9999.)] = numpy.nan |
|
|
317 | 317 | winds[:, numpy.where(data['status'] != self.status_value)] = numpy.nan |
|
|
318 | 318 | snr[numpy.where(snr == -9999.)] = numpy.nan |
|
|
319 | 319 | snr[:, numpy.where(data['status'] != self.status_value)] = numpy.nan |
|
|
320 | 320 | snr = numpy.power(10, snr / 10) |
|
|
321 | 321 | |
|
|
322 | 322 | return height, winds, snr |
|
|
323 | 323 | |
|
|
324 | 324 | def set_output(self): |
|
|
325 | 325 | ''' |
|
|
326 | 326 | Storing data from databuffer to dataOut object |
|
|
327 | 327 | ''' |
|
|
328 | 328 | |
|
|
329 | 329 | self.dataOut.data_SNR = self.snr |
|
|
330 | 330 | self.dataOut.height = self.height |
|
|
331 | 331 | self.dataOut.data = self.buffer |
|
|
332 | 332 | self.dataOut.utctimeInit = self.time |
|
|
333 | 333 | self.dataOut.utctime = self.dataOut.utctimeInit |
|
|
334 | 334 | self.dataOut.useLocalTime = False |
|
|
335 | 335 | self.dataOut.paramInterval = 157 |
|
|
336 | 336 | self.dataOut.timezone = self.timezone |
|
|
337 | 337 | self.dataOut.site = self.siteFile |
|
|
338 | 338 | self.dataOut.nrecords = self.nrecords / self.nmodes |
|
|
339 | 339 | self.dataOut.sizeOfFile = self.sizeOfFile |
|
|
340 | 340 | self.dataOut.lat = self.lat |
|
|
341 | 341 | self.dataOut.lon = self.lon |
|
|
342 | 342 | self.dataOut.channelList = list(range(self.nchannels)) |
|
|
343 | 343 | self.dataOut.kchan = self.kchan |
|
|
344 | 344 | self.dataOut.delta = self.delta |
|
|
345 | 345 | self.dataOut.correction = self.correction |
|
|
346 | 346 | self.dataOut.nmodes = self.nmodes |
|
|
347 | 347 | self.dataOut.imode = self.imode |
|
|
348 | 348 | self.dataOut.antenna = self.antenna |
|
|
349 | 349 | self.dataOut.rx_gains = self.rx_gains |
|
|
350 | 350 | self.dataOut.flagNoData = False |
|
|
351 | 351 | self.dataOut.flagDiscontinuousBlock = self.flagDiscontinuousBlock |
|
|
352 | 352 | |
|
|
353 | 353 | def getData(self): |
|
|
354 | 354 | ''' |
|
|
355 | 355 | Storing data from databuffer to dataOut object |
|
|
356 | 356 | ''' |
|
|
357 | 357 | if self.flagNoMoreFiles: |
|
|
358 | 358 | self.dataOut.flagNoData = True |
|
|
359 |
self.dataOut.error = |
|
|
|
359 | self.dataOut.error = 'No More files to read' | |
|
|
360 | 360 | |
|
|
361 | 361 | if not self.readNextBlock(): |
|
|
362 | 362 | self.dataOut.flagNoData = True |
|
|
363 | 363 | return 0 |
|
|
364 | 364 | |
|
|
365 | 365 | self.set_output() |
|
|
366 | 366 | |
|
|
367 | 367 | return 1 |
|
|
368 | 368 | No newline at end of file |
| @@ -1,1828 +1,1828 | |||
|
|
1 | 1 | ''' |
|
|
2 | 2 | Created on Jul 2, 2014 |
|
|
3 | 3 | |
|
|
4 | 4 | @author: roj-idl71 |
|
|
5 | 5 | ''' |
|
|
6 | 6 | import os |
|
|
7 | 7 | import sys |
|
|
8 | 8 | import glob |
|
|
9 | 9 | import time |
|
|
10 | 10 | import numpy |
|
|
11 | 11 | import fnmatch |
|
|
12 | 12 | import inspect |
|
|
13 | 13 | import time |
|
|
14 | 14 | import datetime |
|
|
15 | 15 | import traceback |
|
|
16 | 16 | import zmq |
|
|
17 | 17 | |
|
|
18 | 18 | try: |
|
|
19 | 19 | from gevent import sleep |
|
|
20 | 20 | except: |
|
|
21 | 21 | from time import sleep |
|
|
22 | 22 | |
|
|
23 | 23 | from schainpy.model.data.jroheaderIO import PROCFLAG, BasicHeader, SystemHeader, RadarControllerHeader, ProcessingHeader |
|
|
24 | 24 | from schainpy.model.data.jroheaderIO import get_dtype_index, get_numpy_dtype, get_procflag_dtype, get_dtype_width |
|
|
25 | 25 | from schainpy.utils import log |
|
|
26 | 26 | import schainpy.admin |
|
|
27 | 27 | |
|
|
28 | 28 | LOCALTIME = True |
|
|
29 | 29 | |
|
|
30 | 30 | |
|
|
31 | 31 | def isNumber(cad): |
|
|
32 | 32 | """ |
|
|
33 | 33 | Chequea si el conjunto de caracteres que componen un string puede ser convertidos a un numero. |
|
|
34 | 34 | |
|
|
35 | 35 | Excepciones: |
|
|
36 | 36 | Si un determinado string no puede ser convertido a numero |
|
|
37 | 37 | Input: |
|
|
38 | 38 | str, string al cual se le analiza para determinar si convertible a un numero o no |
|
|
39 | 39 | |
|
|
40 | 40 | Return: |
|
|
41 | 41 | True : si el string es uno numerico |
|
|
42 | 42 | False : no es un string numerico |
|
|
43 | 43 | """ |
|
|
44 | 44 | try: |
|
|
45 | 45 | float(cad) |
|
|
46 | 46 | return True |
|
|
47 | 47 | except: |
|
|
48 | 48 | return False |
|
|
49 | 49 | |
|
|
50 | 50 | |
|
|
51 | 51 | def isFileInEpoch(filename, startUTSeconds, endUTSeconds): |
|
|
52 | 52 | """ |
|
|
53 | 53 | Esta funcion determina si un archivo de datos se encuentra o no dentro del rango de fecha especificado. |
|
|
54 | 54 | |
|
|
55 | 55 | Inputs: |
|
|
56 | 56 | filename : nombre completo del archivo de datos en formato Jicamarca (.r) |
|
|
57 | 57 | |
|
|
58 | 58 | startUTSeconds : fecha inicial del rango seleccionado. La fecha esta dada en |
|
|
59 | 59 | segundos contados desde 01/01/1970. |
|
|
60 | 60 | endUTSeconds : fecha final del rango seleccionado. La fecha esta dada en |
|
|
61 | 61 | segundos contados desde 01/01/1970. |
|
|
62 | 62 | |
|
|
63 | 63 | Return: |
|
|
64 | 64 | Boolean : Retorna True si el archivo de datos contiene datos en el rango de |
|
|
65 | 65 | fecha especificado, de lo contrario retorna False. |
|
|
66 | 66 | |
|
|
67 | 67 | Excepciones: |
|
|
68 | 68 | Si el archivo no existe o no puede ser abierto |
|
|
69 | 69 | Si la cabecera no puede ser leida. |
|
|
70 | 70 | |
|
|
71 | 71 | """ |
|
|
72 | 72 | basicHeaderObj = BasicHeader(LOCALTIME) |
|
|
73 | 73 | |
|
|
74 | 74 | try: |
|
|
75 | 75 | fp = open(filename, 'rb') |
|
|
76 | 76 | except IOError: |
|
|
77 | 77 | print("The file %s can't be opened" % (filename)) |
|
|
78 | 78 | return 0 |
|
|
79 | 79 | |
|
|
80 | 80 | sts = basicHeaderObj.read(fp) |
|
|
81 | 81 | fp.close() |
|
|
82 | 82 | |
|
|
83 | 83 | if not(sts): |
|
|
84 | 84 | print("Skipping the file %s because it has not a valid header" % (filename)) |
|
|
85 | 85 | return 0 |
|
|
86 | 86 | |
|
|
87 | 87 | if not ((startUTSeconds <= basicHeaderObj.utc) and (endUTSeconds > basicHeaderObj.utc)): |
|
|
88 | 88 | return 0 |
|
|
89 | 89 | |
|
|
90 | 90 | return 1 |
|
|
91 | 91 | |
|
|
92 | 92 | |
|
|
93 | 93 | def isTimeInRange(thisTime, startTime, endTime): |
|
|
94 | 94 | if endTime >= startTime: |
|
|
95 | 95 | if (thisTime < startTime) or (thisTime > endTime): |
|
|
96 | 96 | return 0 |
|
|
97 | 97 | return 1 |
|
|
98 | 98 | else: |
|
|
99 | 99 | if (thisTime < startTime) and (thisTime > endTime): |
|
|
100 | 100 | return 0 |
|
|
101 | 101 | return 1 |
|
|
102 | 102 | |
|
|
103 | 103 | |
|
|
104 | 104 | def isFileInTimeRange(filename, startDate, endDate, startTime, endTime): |
|
|
105 | 105 | """ |
|
|
106 | 106 | Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado. |
|
|
107 | 107 | |
|
|
108 | 108 | Inputs: |
|
|
109 | 109 | filename : nombre completo del archivo de datos en formato Jicamarca (.r) |
|
|
110 | 110 | |
|
|
111 | 111 | startDate : fecha inicial del rango seleccionado en formato datetime.date |
|
|
112 | 112 | |
|
|
113 | 113 | endDate : fecha final del rango seleccionado en formato datetime.date |
|
|
114 | 114 | |
|
|
115 | 115 | startTime : tiempo inicial del rango seleccionado en formato datetime.time |
|
|
116 | 116 | |
|
|
117 | 117 | endTime : tiempo final del rango seleccionado en formato datetime.time |
|
|
118 | 118 | |
|
|
119 | 119 | Return: |
|
|
120 | 120 | Boolean : Retorna True si el archivo de datos contiene datos en el rango de |
|
|
121 | 121 | fecha especificado, de lo contrario retorna False. |
|
|
122 | 122 | |
|
|
123 | 123 | Excepciones: |
|
|
124 | 124 | Si el archivo no existe o no puede ser abierto |
|
|
125 | 125 | Si la cabecera no puede ser leida. |
|
|
126 | 126 | |
|
|
127 | 127 | """ |
|
|
128 | 128 | |
|
|
129 | 129 | try: |
|
|
130 | 130 | fp = open(filename, 'rb') |
|
|
131 | 131 | except IOError: |
|
|
132 | 132 | print("The file %s can't be opened" % (filename)) |
|
|
133 | 133 | return None |
|
|
134 | 134 | |
|
|
135 | 135 | firstBasicHeaderObj = BasicHeader(LOCALTIME) |
|
|
136 | 136 | systemHeaderObj = SystemHeader() |
|
|
137 | 137 | radarControllerHeaderObj = RadarControllerHeader() |
|
|
138 | 138 | processingHeaderObj = ProcessingHeader() |
|
|
139 | 139 | |
|
|
140 | 140 | lastBasicHeaderObj = BasicHeader(LOCALTIME) |
|
|
141 | 141 | |
|
|
142 | 142 | sts = firstBasicHeaderObj.read(fp) |
|
|
143 | 143 | |
|
|
144 | 144 | if not(sts): |
|
|
145 | 145 | print("[Reading] Skipping the file %s because it has not a valid header" % (filename)) |
|
|
146 | 146 | return None |
|
|
147 | 147 | |
|
|
148 | 148 | if not systemHeaderObj.read(fp): |
|
|
149 | 149 | return None |
|
|
150 | 150 | |
|
|
151 | 151 | if not radarControllerHeaderObj.read(fp): |
|
|
152 | 152 | return None |
|
|
153 | 153 | |
|
|
154 | 154 | if not processingHeaderObj.read(fp): |
|
|
155 | 155 | return None |
|
|
156 | 156 | |
|
|
157 | 157 | filesize = os.path.getsize(filename) |
|
|
158 | 158 | |
|
|
159 | 159 | offset = processingHeaderObj.blockSize + 24 # header size |
|
|
160 | 160 | |
|
|
161 | 161 | if filesize <= offset: |
|
|
162 | 162 | print("[Reading] %s: This file has not enough data" % filename) |
|
|
163 | 163 | return None |
|
|
164 | 164 | |
|
|
165 | 165 | fp.seek(-offset, 2) |
|
|
166 | 166 | |
|
|
167 | 167 | sts = lastBasicHeaderObj.read(fp) |
|
|
168 | 168 | |
|
|
169 | 169 | fp.close() |
|
|
170 | 170 | |
|
|
171 | 171 | thisDatetime = lastBasicHeaderObj.datatime |
|
|
172 | 172 | thisTime_last_block = thisDatetime.time() |
|
|
173 | 173 | |
|
|
174 | 174 | thisDatetime = firstBasicHeaderObj.datatime |
|
|
175 | 175 | thisDate = thisDatetime.date() |
|
|
176 | 176 | thisTime_first_block = thisDatetime.time() |
|
|
177 | 177 | |
|
|
178 | 178 | # General case |
|
|
179 | 179 | # o>>>>>>>>>>>>>><<<<<<<<<<<<<<o |
|
|
180 | 180 | #-----------o----------------------------o----------- |
|
|
181 | 181 | # startTime endTime |
|
|
182 | 182 | |
|
|
183 | 183 | if endTime >= startTime: |
|
|
184 | 184 | if (thisTime_last_block < startTime) or (thisTime_first_block > endTime): |
|
|
185 | 185 | return None |
|
|
186 | 186 | |
|
|
187 | 187 | return thisDatetime |
|
|
188 | 188 | |
|
|
189 | 189 | # If endTime < startTime then endTime belongs to the next day |
|
|
190 | 190 | |
|
|
191 | 191 | #<<<<<<<<<<<o o>>>>>>>>>>> |
|
|
192 | 192 | #-----------o----------------------------o----------- |
|
|
193 | 193 | # endTime startTime |
|
|
194 | 194 | |
|
|
195 | 195 | if (thisDate == startDate) and (thisTime_last_block < startTime): |
|
|
196 | 196 | return None |
|
|
197 | 197 | |
|
|
198 | 198 | if (thisDate == endDate) and (thisTime_first_block > endTime): |
|
|
199 | 199 | return None |
|
|
200 | 200 | |
|
|
201 | 201 | if (thisTime_last_block < startTime) and (thisTime_first_block > endTime): |
|
|
202 | 202 | return None |
|
|
203 | 203 | |
|
|
204 | 204 | return thisDatetime |
|
|
205 | 205 | |
|
|
206 | 206 | |
|
|
207 | 207 | def isFolderInDateRange(folder, startDate=None, endDate=None): |
|
|
208 | 208 | """ |
|
|
209 | 209 | Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado. |
|
|
210 | 210 | |
|
|
211 | 211 | Inputs: |
|
|
212 | 212 | folder : nombre completo del directorio. |
|
|
213 | 213 | Su formato deberia ser "/path_root/?YYYYDDD" |
|
|
214 | 214 | |
|
|
215 | 215 | siendo: |
|
|
216 | 216 | YYYY : Anio (ejemplo 2015) |
|
|
217 | 217 | DDD : Dia del anio (ejemplo 305) |
|
|
218 | 218 | |
|
|
219 | 219 | startDate : fecha inicial del rango seleccionado en formato datetime.date |
|
|
220 | 220 | |
|
|
221 | 221 | endDate : fecha final del rango seleccionado en formato datetime.date |
|
|
222 | 222 | |
|
|
223 | 223 | Return: |
|
|
224 | 224 | Boolean : Retorna True si el archivo de datos contiene datos en el rango de |
|
|
225 | 225 | fecha especificado, de lo contrario retorna False. |
|
|
226 | 226 | Excepciones: |
|
|
227 | 227 | Si el directorio no tiene el formato adecuado |
|
|
228 | 228 | """ |
|
|
229 | 229 | |
|
|
230 | 230 | basename = os.path.basename(folder) |
|
|
231 | 231 | |
|
|
232 | 232 | if not isRadarFolder(basename): |
|
|
233 | 233 | print("The folder %s has not the rigth format" % folder) |
|
|
234 | 234 | return 0 |
|
|
235 | 235 | |
|
|
236 | 236 | if startDate and endDate: |
|
|
237 | 237 | thisDate = getDateFromRadarFolder(basename) |
|
|
238 | 238 | |
|
|
239 | 239 | if thisDate < startDate: |
|
|
240 | 240 | return 0 |
|
|
241 | 241 | |
|
|
242 | 242 | if thisDate > endDate: |
|
|
243 | 243 | return 0 |
|
|
244 | 244 | |
|
|
245 | 245 | return 1 |
|
|
246 | 246 | |
|
|
247 | 247 | |
|
|
248 | 248 | def isFileInDateRange(filename, startDate=None, endDate=None): |
|
|
249 | 249 | """ |
|
|
250 | 250 | Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado. |
|
|
251 | 251 | |
|
|
252 | 252 | Inputs: |
|
|
253 | 253 | filename : nombre completo del archivo de datos en formato Jicamarca (.r) |
|
|
254 | 254 | |
|
|
255 | 255 | Su formato deberia ser "?YYYYDDDsss" |
|
|
256 | 256 | |
|
|
257 | 257 | siendo: |
|
|
258 | 258 | YYYY : Anio (ejemplo 2015) |
|
|
259 | 259 | DDD : Dia del anio (ejemplo 305) |
|
|
260 | 260 | sss : set |
|
|
261 | 261 | |
|
|
262 | 262 | startDate : fecha inicial del rango seleccionado en formato datetime.date |
|
|
263 | 263 | |
|
|
264 | 264 | endDate : fecha final del rango seleccionado en formato datetime.date |
|
|
265 | 265 | |
|
|
266 | 266 | Return: |
|
|
267 | 267 | Boolean : Retorna True si el archivo de datos contiene datos en el rango de |
|
|
268 | 268 | fecha especificado, de lo contrario retorna False. |
|
|
269 | 269 | Excepciones: |
|
|
270 | 270 | Si el archivo no tiene el formato adecuado |
|
|
271 | 271 | """ |
|
|
272 | 272 | |
|
|
273 | 273 | basename = os.path.basename(filename) |
|
|
274 | 274 | |
|
|
275 | 275 | if not isRadarFile(basename): |
|
|
276 | 276 | print("The filename %s has not the rigth format" % filename) |
|
|
277 | 277 | return 0 |
|
|
278 | 278 | |
|
|
279 | 279 | if startDate and endDate: |
|
|
280 | 280 | thisDate = getDateFromRadarFile(basename) |
|
|
281 | 281 | |
|
|
282 | 282 | if thisDate < startDate: |
|
|
283 | 283 | return 0 |
|
|
284 | 284 | |
|
|
285 | 285 | if thisDate > endDate: |
|
|
286 | 286 | return 0 |
|
|
287 | 287 | |
|
|
288 | 288 | return 1 |
|
|
289 | 289 | |
|
|
290 | 290 | |
|
|
291 | 291 | def getFileFromSet(path, ext, set): |
|
|
292 | 292 | validFilelist = [] |
|
|
293 | 293 | fileList = os.listdir(path) |
|
|
294 | 294 | |
|
|
295 | 295 | # 0 1234 567 89A BCDE |
|
|
296 | 296 | # H YYYY DDD SSS .ext |
|
|
297 | 297 | |
|
|
298 | 298 | for thisFile in fileList: |
|
|
299 | 299 | try: |
|
|
300 | 300 | year = int(thisFile[1:5]) |
|
|
301 | 301 | doy = int(thisFile[5:8]) |
|
|
302 | 302 | except: |
|
|
303 | 303 | continue |
|
|
304 | 304 | |
|
|
305 | 305 | if (os.path.splitext(thisFile)[-1].lower() != ext.lower()): |
|
|
306 | 306 | continue |
|
|
307 | 307 | |
|
|
308 | 308 | validFilelist.append(thisFile) |
|
|
309 | 309 | |
|
|
310 | 310 | myfile = fnmatch.filter( |
|
|
311 | 311 | validFilelist, '*%4.4d%3.3d%3.3d*' % (year, doy, set)) |
|
|
312 | 312 | |
|
|
313 | 313 | if len(myfile) != 0: |
|
|
314 | 314 | return myfile[0] |
|
|
315 | 315 | else: |
|
|
316 | 316 | filename = '*%4.4d%3.3d%3.3d%s' % (year, doy, set, ext.lower()) |
|
|
317 | 317 | print('the filename %s does not exist' % filename) |
|
|
318 | 318 | print('...going to the last file: ') |
|
|
319 | 319 | |
|
|
320 | 320 | if validFilelist: |
|
|
321 | 321 | validFilelist = sorted(validFilelist, key=str.lower) |
|
|
322 | 322 | return validFilelist[-1] |
|
|
323 | 323 | |
|
|
324 | 324 | return None |
|
|
325 | 325 | |
|
|
326 | 326 | |
|
|
327 | 327 | def getlastFileFromPath(path, ext): |
|
|
328 | 328 | """ |
|
|
329 | 329 | Depura el fileList dejando solo los que cumplan el formato de "PYYYYDDDSSS.ext" |
|
|
330 | 330 | al final de la depuracion devuelve el ultimo file de la lista que quedo. |
|
|
331 | 331 | |
|
|
332 | 332 | Input: |
|
|
333 | 333 | fileList : lista conteniendo todos los files (sin path) que componen una determinada carpeta |
|
|
334 | 334 | ext : extension de los files contenidos en una carpeta |
|
|
335 | 335 | |
|
|
336 | 336 | Return: |
|
|
337 | 337 | El ultimo file de una determinada carpeta, no se considera el path. |
|
|
338 | 338 | """ |
|
|
339 | 339 | validFilelist = [] |
|
|
340 | 340 | fileList = os.listdir(path) |
|
|
341 | 341 | |
|
|
342 | 342 | # 0 1234 567 89A BCDE |
|
|
343 | 343 | # H YYYY DDD SSS .ext |
|
|
344 | 344 | |
|
|
345 | 345 | for thisFile in fileList: |
|
|
346 | 346 | |
|
|
347 | 347 | year = thisFile[1:5] |
|
|
348 | 348 | if not isNumber(year): |
|
|
349 | 349 | continue |
|
|
350 | 350 | |
|
|
351 | 351 | doy = thisFile[5:8] |
|
|
352 | 352 | if not isNumber(doy): |
|
|
353 | 353 | continue |
|
|
354 | 354 | |
|
|
355 | 355 | year = int(year) |
|
|
356 | 356 | doy = int(doy) |
|
|
357 | 357 | |
|
|
358 | 358 | if (os.path.splitext(thisFile)[-1].lower() != ext.lower()): |
|
|
359 | 359 | continue |
|
|
360 | 360 | |
|
|
361 | 361 | validFilelist.append(thisFile) |
|
|
362 | 362 | |
|
|
363 | 363 | if validFilelist: |
|
|
364 | 364 | validFilelist = sorted(validFilelist, key=str.lower) |
|
|
365 | 365 | return validFilelist[-1] |
|
|
366 | 366 | |
|
|
367 | 367 | return None |
|
|
368 | 368 | |
|
|
369 | 369 | |
|
|
370 | 370 | def checkForRealPath(path, foldercounter, year, doy, set, ext): |
|
|
371 | 371 | """ |
|
|
372 | 372 | Por ser Linux Case Sensitive entonces checkForRealPath encuentra el nombre correcto de un path, |
|
|
373 | 373 | Prueba por varias combinaciones de nombres entre mayusculas y minusculas para determinar |
|
|
374 | 374 | el path exacto de un determinado file. |
|
|
375 | 375 | |
|
|
376 | 376 | Example : |
|
|
377 | 377 | nombre correcto del file es .../.../D2009307/P2009307367.ext |
|
|
378 | 378 | |
|
|
379 | 379 | Entonces la funcion prueba con las siguientes combinaciones |
|
|
380 | 380 | .../.../y2009307367.ext |
|
|
381 | 381 | .../.../Y2009307367.ext |
|
|
382 | 382 | .../.../x2009307/y2009307367.ext |
|
|
383 | 383 | .../.../x2009307/Y2009307367.ext |
|
|
384 | 384 | .../.../X2009307/y2009307367.ext |
|
|
385 | 385 | .../.../X2009307/Y2009307367.ext |
|
|
386 | 386 | siendo para este caso, la ultima combinacion de letras, identica al file buscado |
|
|
387 | 387 | |
|
|
388 | 388 | Return: |
|
|
389 | 389 | Si encuentra la cobinacion adecuada devuelve el path completo y el nombre del file |
|
|
390 | 390 | caso contrario devuelve None como path y el la ultima combinacion de nombre en mayusculas |
|
|
391 | 391 | para el filename |
|
|
392 | 392 | """ |
|
|
393 | 393 | fullfilename = None |
|
|
394 | 394 | find_flag = False |
|
|
395 | 395 | filename = None |
|
|
396 | 396 | |
|
|
397 | 397 | prefixDirList = [None, 'd', 'D'] |
|
|
398 | 398 | if ext.lower() == ".r": # voltage |
|
|
399 | 399 | prefixFileList = ['d', 'D'] |
|
|
400 | 400 | elif ext.lower() == ".pdata": # spectra |
|
|
401 | 401 | prefixFileList = ['p', 'P'] |
|
|
402 | 402 | else: |
|
|
403 | 403 | return None, filename |
|
|
404 | 404 | |
|
|
405 | 405 | # barrido por las combinaciones posibles |
|
|
406 | 406 | for prefixDir in prefixDirList: |
|
|
407 | 407 | thispath = path |
|
|
408 | 408 | if prefixDir != None: |
|
|
409 | 409 | # formo el nombre del directorio xYYYYDDD (x=d o x=D) |
|
|
410 | 410 | if foldercounter == 0: |
|
|
411 | 411 | thispath = os.path.join(path, "%s%04d%03d" % |
|
|
412 | 412 | (prefixDir, year, doy)) |
|
|
413 | 413 | else: |
|
|
414 | 414 | thispath = os.path.join(path, "%s%04d%03d_%02d" % ( |
|
|
415 | 415 | prefixDir, year, doy, foldercounter)) |
|
|
416 | 416 | for prefixFile in prefixFileList: # barrido por las dos combinaciones posibles de "D" |
|
|
417 | 417 | # formo el nombre del file xYYYYDDDSSS.ext |
|
|
418 | 418 | filename = "%s%04d%03d%03d%s" % (prefixFile, year, doy, set, ext) |
|
|
419 | 419 | fullfilename = os.path.join( |
|
|
420 | 420 | thispath, filename) # formo el path completo |
|
|
421 | 421 | |
|
|
422 | 422 | if os.path.exists(fullfilename): # verifico que exista |
|
|
423 | 423 | find_flag = True |
|
|
424 | 424 | break |
|
|
425 | 425 | if find_flag: |
|
|
426 | 426 | break |
|
|
427 | 427 | |
|
|
428 | 428 | if not(find_flag): |
|
|
429 | 429 | return None, filename |
|
|
430 | 430 | |
|
|
431 | 431 | return fullfilename, filename |
|
|
432 | 432 | |
|
|
433 | 433 | |
|
|
434 | 434 | def isRadarFolder(folder): |
|
|
435 | 435 | try: |
|
|
436 | 436 | year = int(folder[1:5]) |
|
|
437 | 437 | doy = int(folder[5:8]) |
|
|
438 | 438 | except: |
|
|
439 | 439 | return 0 |
|
|
440 | 440 | |
|
|
441 | 441 | return 1 |
|
|
442 | 442 | |
|
|
443 | 443 | |
|
|
444 | 444 | def isRadarFile(file): |
|
|
445 | 445 | try: |
|
|
446 | 446 | year = int(file[1:5]) |
|
|
447 | 447 | doy = int(file[5:8]) |
|
|
448 | 448 | set = int(file[8:11]) |
|
|
449 | 449 | except: |
|
|
450 | 450 | return 0 |
|
|
451 | 451 | |
|
|
452 | 452 | return 1 |
|
|
453 | 453 | |
|
|
454 | 454 | |
|
|
455 | 455 | def getDateFromRadarFile(file): |
|
|
456 | 456 | try: |
|
|
457 | 457 | year = int(file[1:5]) |
|
|
458 | 458 | doy = int(file[5:8]) |
|
|
459 | 459 | set = int(file[8:11]) |
|
|
460 | 460 | except: |
|
|
461 | 461 | return None |
|
|
462 | 462 | |
|
|
463 | 463 | thisDate = datetime.date(year, 1, 1) + datetime.timedelta(doy - 1) |
|
|
464 | 464 | return thisDate |
|
|
465 | 465 | |
|
|
466 | 466 | |
|
|
467 | 467 | def getDateFromRadarFolder(folder): |
|
|
468 | 468 | try: |
|
|
469 | 469 | year = int(folder[1:5]) |
|
|
470 | 470 | doy = int(folder[5:8]) |
|
|
471 | 471 | except: |
|
|
472 | 472 | return None |
|
|
473 | 473 | |
|
|
474 | 474 | thisDate = datetime.date(year, 1, 1) + datetime.timedelta(doy - 1) |
|
|
475 | 475 | return thisDate |
|
|
476 | 476 | |
|
|
477 | 477 | |
|
|
478 | 478 | class JRODataIO: |
|
|
479 | 479 | |
|
|
480 | 480 | c = 3E8 |
|
|
481 | 481 | |
|
|
482 | 482 | isConfig = False |
|
|
483 | 483 | |
|
|
484 | 484 | basicHeaderObj = None |
|
|
485 | 485 | |
|
|
486 | 486 | systemHeaderObj = None |
|
|
487 | 487 | |
|
|
488 | 488 | radarControllerHeaderObj = None |
|
|
489 | 489 | |
|
|
490 | 490 | processingHeaderObj = None |
|
|
491 | 491 | |
|
|
492 | 492 | dtype = None |
|
|
493 | 493 | |
|
|
494 | 494 | pathList = [] |
|
|
495 | 495 | |
|
|
496 | 496 | filenameList = [] |
|
|
497 | 497 | |
|
|
498 | 498 | filename = None |
|
|
499 | 499 | |
|
|
500 | 500 | ext = None |
|
|
501 | 501 | |
|
|
502 | 502 | flagIsNewFile = 1 |
|
|
503 | 503 | |
|
|
504 | 504 | flagDiscontinuousBlock = 0 |
|
|
505 | 505 | |
|
|
506 | 506 | flagIsNewBlock = 0 |
|
|
507 | 507 | |
|
|
508 | 508 | fp = None |
|
|
509 | 509 | |
|
|
510 | 510 | firstHeaderSize = 0 |
|
|
511 | 511 | |
|
|
512 | 512 | basicHeaderSize = 24 |
|
|
513 | 513 | |
|
|
514 | 514 | versionFile = 1103 |
|
|
515 | 515 | |
|
|
516 | 516 | fileSize = None |
|
|
517 | 517 | |
|
|
518 | 518 | # ippSeconds = None |
|
|
519 | 519 | |
|
|
520 | 520 | fileSizeByHeader = None |
|
|
521 | 521 | |
|
|
522 | 522 | fileIndex = None |
|
|
523 | 523 | |
|
|
524 | 524 | profileIndex = None |
|
|
525 | 525 | |
|
|
526 | 526 | blockIndex = None |
|
|
527 | 527 | |
|
|
528 | 528 | nTotalBlocks = None |
|
|
529 | 529 | |
|
|
530 | 530 | maxTimeStep = 30 |
|
|
531 | 531 | |
|
|
532 | 532 | lastUTTime = None |
|
|
533 | 533 | |
|
|
534 | 534 | datablock = None |
|
|
535 | 535 | |
|
|
536 | 536 | dataOut = None |
|
|
537 | 537 | |
|
|
538 | 538 | blocksize = None |
|
|
539 | 539 | |
|
|
540 | 540 | getByBlock = False |
|
|
541 | 541 | |
|
|
542 | 542 | def __init__(self): |
|
|
543 | 543 | |
|
|
544 | 544 | raise NotImplementedError |
|
|
545 | 545 | |
|
|
546 | 546 | def run(self): |
|
|
547 | 547 | |
|
|
548 | 548 | raise NotImplementedError |
|
|
549 | 549 | |
|
|
550 | 550 | def getDtypeWidth(self): |
|
|
551 | 551 | |
|
|
552 | 552 | dtype_index = get_dtype_index(self.dtype) |
|
|
553 | 553 | dtype_width = get_dtype_width(dtype_index) |
|
|
554 | 554 | |
|
|
555 | 555 | return dtype_width |
|
|
556 | 556 | |
|
|
557 | 557 | def getAllowedArgs(self): |
|
|
558 | 558 | if hasattr(self, '__attrs__'): |
|
|
559 | 559 | return self.__attrs__ |
|
|
560 | 560 | else: |
|
|
561 | 561 | return inspect.getargspec(self.run).args |
|
|
562 | 562 | |
|
|
563 | 563 | |
|
|
564 | 564 | class JRODataReader(JRODataIO): |
|
|
565 | 565 | |
|
|
566 | 566 | online = 0 |
|
|
567 | 567 | |
|
|
568 | 568 | realtime = 0 |
|
|
569 | 569 | |
|
|
570 | 570 | nReadBlocks = 0 |
|
|
571 | 571 | |
|
|
572 | 572 | delay = 10 # number of seconds waiting a new file |
|
|
573 | 573 | |
|
|
574 | 574 | nTries = 3 # quantity tries |
|
|
575 | 575 | |
|
|
576 | 576 | nFiles = 3 # number of files for searching |
|
|
577 | 577 | |
|
|
578 | 578 | path = None |
|
|
579 | 579 | |
|
|
580 | 580 | foldercounter = 0 |
|
|
581 | 581 | |
|
|
582 | 582 | flagNoMoreFiles = 0 |
|
|
583 | 583 | |
|
|
584 | 584 | datetimeList = [] |
|
|
585 | 585 | |
|
|
586 | 586 | __isFirstTimeOnline = 1 |
|
|
587 | 587 | |
|
|
588 | 588 | __printInfo = True |
|
|
589 | 589 | |
|
|
590 | 590 | profileIndex = None |
|
|
591 | 591 | |
|
|
592 | 592 | nTxs = 1 |
|
|
593 | 593 | |
|
|
594 | 594 | txIndex = None |
|
|
595 | 595 | |
|
|
596 | 596 | # Added-------------------- |
|
|
597 | 597 | |
|
|
598 | 598 | selBlocksize = None |
|
|
599 | 599 | |
|
|
600 | 600 | selBlocktime = None |
|
|
601 | 601 | |
|
|
602 | 602 | def __init__(self): |
|
|
603 | 603 | """ |
|
|
604 | 604 | This class is used to find data files |
|
|
605 | 605 | |
|
|
606 | 606 | Example: |
|
|
607 | 607 | reader = JRODataReader() |
|
|
608 | 608 | fileList = reader.findDataFiles() |
|
|
609 | 609 | |
|
|
610 | 610 | """ |
|
|
611 | 611 | pass |
|
|
612 | 612 | |
|
|
613 | 613 | def createObjByDefault(self): |
|
|
614 | 614 | """ |
|
|
615 | 615 | |
|
|
616 | 616 | """ |
|
|
617 | 617 | raise NotImplementedError |
|
|
618 | 618 | |
|
|
619 | 619 | def getBlockDimension(self): |
|
|
620 | 620 | |
|
|
621 | 621 | raise NotImplementedError |
|
|
622 | 622 | |
|
|
623 | 623 | def searchFilesOffLine(self, |
|
|
624 | 624 | path, |
|
|
625 | 625 | startDate=None, |
|
|
626 | 626 | endDate=None, |
|
|
627 | 627 | startTime=datetime.time(0, 0, 0), |
|
|
628 | 628 | endTime=datetime.time(23, 59, 59), |
|
|
629 | 629 | set=None, |
|
|
630 | 630 | expLabel='', |
|
|
631 | 631 | ext='.r', |
|
|
632 | 632 | cursor=None, |
|
|
633 | 633 | skip=None, |
|
|
634 | 634 | walk=True): |
|
|
635 | 635 | |
|
|
636 | 636 | self.filenameList = [] |
|
|
637 | 637 | self.datetimeList = [] |
|
|
638 | 638 | |
|
|
639 | 639 | pathList = [] |
|
|
640 | 640 | |
|
|
641 | 641 | dateList, pathList = self.findDatafiles( |
|
|
642 | 642 | path, startDate, endDate, expLabel, ext, walk, include_path=True) |
|
|
643 | 643 | |
|
|
644 | 644 | if dateList == []: |
|
|
645 | 645 | return [], [] |
|
|
646 | 646 | |
|
|
647 | 647 | if len(dateList) > 1: |
|
|
648 | 648 | print("[Reading] Data found for date range [%s - %s]: total days = %d" % (startDate, endDate, len(dateList))) |
|
|
649 | 649 | else: |
|
|
650 | 650 | print("[Reading] Data found for date range [%s - %s]: date = %s" % (startDate, endDate, dateList[0])) |
|
|
651 | 651 | |
|
|
652 | 652 | filenameList = [] |
|
|
653 | 653 | datetimeList = [] |
|
|
654 | 654 | |
|
|
655 | 655 | for thisPath in pathList: |
|
|
656 | 656 | |
|
|
657 | 657 | fileList = glob.glob1(thisPath, "*%s" % ext) |
|
|
658 | 658 | fileList.sort() |
|
|
659 | 659 | |
|
|
660 | 660 | for file in fileList: |
|
|
661 | 661 | |
|
|
662 | 662 | filename = os.path.join(thisPath, file) |
|
|
663 | 663 | |
|
|
664 | 664 | if not isFileInDateRange(filename, startDate, endDate): |
|
|
665 | 665 | continue |
|
|
666 | 666 | |
|
|
667 | 667 | thisDatetime = isFileInTimeRange( |
|
|
668 | 668 | filename, startDate, endDate, startTime, endTime) |
|
|
669 | 669 | |
|
|
670 | 670 | if not(thisDatetime): |
|
|
671 | 671 | continue |
|
|
672 | 672 | |
|
|
673 | 673 | filenameList.append(filename) |
|
|
674 | 674 | datetimeList.append(thisDatetime) |
|
|
675 | 675 | |
|
|
676 | 676 | if cursor is not None and skip is not None: |
|
|
677 | 677 | filenameList = filenameList[cursor * skip:cursor * skip + skip] |
|
|
678 | 678 | datetimeList = datetimeList[cursor * skip:cursor * skip + skip] |
|
|
679 | 679 | |
|
|
680 | 680 | if not(filenameList): |
|
|
681 | 681 | print("[Reading] Time range selected invalid [%s - %s]: No *%s files in %s)" % (startTime, endTime, ext, path)) |
|
|
682 | 682 | return [], [] |
|
|
683 | 683 | |
|
|
684 | 684 | print("[Reading] %d file(s) was(were) found in time range: %s - %s" % (len(filenameList), startTime, endTime)) |
|
|
685 | 685 | |
|
|
686 | 686 | # for i in range(len(filenameList)): |
|
|
687 | 687 | # print "[Reading] %s -> [%s]" %(filenameList[i], datetimeList[i].ctime()) |
|
|
688 | 688 | |
|
|
689 | 689 | self.filenameList = filenameList |
|
|
690 | 690 | self.datetimeList = datetimeList |
|
|
691 | 691 | |
|
|
692 | 692 | return pathList, filenameList |
|
|
693 | 693 | |
|
|
694 | 694 | def __searchFilesOnLine(self, path, expLabel="", ext=None, walk=True, set=None): |
|
|
695 | 695 | """ |
|
|
696 | 696 | Busca el ultimo archivo de la ultima carpeta (determinada o no por startDateTime) y |
|
|
697 | 697 | devuelve el archivo encontrado ademas de otros datos. |
|
|
698 | 698 | |
|
|
699 | 699 | Input: |
|
|
700 | 700 | path : carpeta donde estan contenidos los files que contiene data |
|
|
701 | 701 | |
|
|
702 | 702 | expLabel : Nombre del subexperimento (subfolder) |
|
|
703 | 703 | |
|
|
704 | 704 | ext : extension de los files |
|
|
705 | 705 | |
|
|
706 | 706 | walk : Si es habilitado no realiza busquedas dentro de los ubdirectorios (doypath) |
|
|
707 | 707 | |
|
|
708 | 708 | Return: |
|
|
709 | 709 | directory : eL directorio donde esta el file encontrado |
|
|
710 | 710 | filename : el ultimo file de una determinada carpeta |
|
|
711 | 711 | year : el anho |
|
|
712 | 712 | doy : el numero de dia del anho |
|
|
713 | 713 | set : el set del archivo |
|
|
714 | 714 | |
|
|
715 | 715 | |
|
|
716 | 716 | """ |
|
|
717 | 717 | if not os.path.isdir(path): |
|
|
718 | 718 | return None, None, None, None, None, None |
|
|
719 | 719 | |
|
|
720 | 720 | dirList = [] |
|
|
721 | 721 | |
|
|
722 | 722 | if not walk: |
|
|
723 | 723 | fullpath = path |
|
|
724 | 724 | foldercounter = 0 |
|
|
725 | 725 | else: |
|
|
726 | 726 | # Filtra solo los directorios |
|
|
727 | 727 | for thisPath in os.listdir(path): |
|
|
728 | 728 | if not os.path.isdir(os.path.join(path, thisPath)): |
|
|
729 | 729 | continue |
|
|
730 | 730 | if not isRadarFolder(thisPath): |
|
|
731 | 731 | continue |
|
|
732 | 732 | |
|
|
733 | 733 | dirList.append(thisPath) |
|
|
734 | 734 | |
|
|
735 | 735 | if not(dirList): |
|
|
736 | 736 | return None, None, None, None, None, None |
|
|
737 | 737 | |
|
|
738 | 738 | dirList = sorted(dirList, key=str.lower) |
|
|
739 | 739 | |
|
|
740 | 740 | doypath = dirList[-1] |
|
|
741 | 741 | foldercounter = int(doypath.split('_')[1]) if len( |
|
|
742 | 742 | doypath.split('_')) > 1 else 0 |
|
|
743 | 743 | fullpath = os.path.join(path, doypath, expLabel) |
|
|
744 | 744 | |
|
|
745 | 745 | print("[Reading] %s folder was found: " % (fullpath)) |
|
|
746 | 746 | |
|
|
747 | 747 | if set == None: |
|
|
748 | 748 | filename = getlastFileFromPath(fullpath, ext) |
|
|
749 | 749 | else: |
|
|
750 | 750 | filename = getFileFromSet(fullpath, ext, set) |
|
|
751 | 751 | |
|
|
752 | 752 | if not(filename): |
|
|
753 | 753 | return None, None, None, None, None, None |
|
|
754 | 754 | |
|
|
755 | 755 | print("[Reading] %s file was found" % (filename)) |
|
|
756 | 756 | |
|
|
757 | 757 | if not(self.__verifyFile(os.path.join(fullpath, filename))): |
|
|
758 | 758 | return None, None, None, None, None, None |
|
|
759 | 759 | |
|
|
760 | 760 | year = int(filename[1:5]) |
|
|
761 | 761 | doy = int(filename[5:8]) |
|
|
762 | 762 | set = int(filename[8:11]) |
|
|
763 | 763 | |
|
|
764 | 764 | return fullpath, foldercounter, filename, year, doy, set |
|
|
765 | 765 | |
|
|
766 | 766 | def __setNextFileOffline(self): |
|
|
767 | 767 | |
|
|
768 | 768 | idFile = self.fileIndex |
|
|
769 | 769 | |
|
|
770 | 770 | while (True): |
|
|
771 | 771 | idFile += 1 |
|
|
772 | 772 | if not(idFile < len(self.filenameList)): |
|
|
773 | 773 | self.flagNoMoreFiles = 1 |
|
|
774 | 774 | # print "[Reading] No more Files" |
|
|
775 | 775 | return 0 |
|
|
776 | 776 | |
|
|
777 | 777 | filename = self.filenameList[idFile] |
|
|
778 | 778 | |
|
|
779 | 779 | if not(self.__verifyFile(filename)): |
|
|
780 | 780 | continue |
|
|
781 | 781 | |
|
|
782 | 782 | fileSize = os.path.getsize(filename) |
|
|
783 | 783 | fp = open(filename, 'rb') |
|
|
784 | 784 | break |
|
|
785 | 785 | |
|
|
786 | 786 | self.flagIsNewFile = 1 |
|
|
787 | 787 | self.fileIndex = idFile |
|
|
788 | 788 | self.filename = filename |
|
|
789 | 789 | self.fileSize = fileSize |
|
|
790 | 790 | self.fp = fp |
|
|
791 | 791 | |
|
|
792 | 792 | # print "[Reading] Setting the file: %s"%self.filename |
|
|
793 | 793 | |
|
|
794 | 794 | return 1 |
|
|
795 | 795 | |
|
|
796 | 796 | def __setNextFileOnline(self): |
|
|
797 | 797 | """ |
|
|
798 | 798 | Busca el siguiente file que tenga suficiente data para ser leida, dentro de un folder especifico, si |
|
|
799 | 799 | no encuentra un file valido espera un tiempo determinado y luego busca en los posibles n files |
|
|
800 | 800 | siguientes. |
|
|
801 | 801 | |
|
|
802 | 802 | Affected: |
|
|
803 | 803 | self.flagIsNewFile |
|
|
804 | 804 | self.filename |
|
|
805 | 805 | self.fileSize |
|
|
806 | 806 | self.fp |
|
|
807 | 807 | self.set |
|
|
808 | 808 | self.flagNoMoreFiles |
|
|
809 | 809 | |
|
|
810 | 810 | Return: |
|
|
811 | 811 | 0 : si luego de una busqueda del siguiente file valido este no pudo ser encontrado |
|
|
812 | 812 | 1 : si el file fue abierto con exito y esta listo a ser leido |
|
|
813 | 813 | |
|
|
814 | 814 | Excepciones: |
|
|
815 | 815 | Si un determinado file no puede ser abierto |
|
|
816 | 816 | """ |
|
|
817 | 817 | nFiles = 0 |
|
|
818 | 818 | fileOk_flag = False |
|
|
819 | 819 | firstTime_flag = True |
|
|
820 | 820 | |
|
|
821 | 821 | self.set += 1 |
|
|
822 | 822 | |
|
|
823 | 823 | if self.set > 999: |
|
|
824 | 824 | self.set = 0 |
|
|
825 | 825 | self.foldercounter += 1 |
|
|
826 | 826 | |
|
|
827 | 827 | # busca el 1er file disponible |
|
|
828 | 828 | fullfilename, filename = checkForRealPath( |
|
|
829 | 829 | self.path, self.foldercounter, self.year, self.doy, self.set, self.ext) |
|
|
830 | 830 | if fullfilename: |
|
|
831 | 831 | if self.__verifyFile(fullfilename, False): |
|
|
832 | 832 | fileOk_flag = True |
|
|
833 | 833 | |
|
|
834 | 834 | # si no encuentra un file entonces espera y vuelve a buscar |
|
|
835 | 835 | if not(fileOk_flag): |
|
|
836 | 836 | # busco en los siguientes self.nFiles+1 files posibles |
|
|
837 | 837 | for nFiles in range(self.nFiles + 1): |
|
|
838 | 838 | |
|
|
839 | 839 | if firstTime_flag: # si es la 1era vez entonces hace el for self.nTries veces |
|
|
840 | 840 | tries = self.nTries |
|
|
841 | 841 | else: |
|
|
842 | 842 | tries = 1 # si no es la 1era vez entonces solo lo hace una vez |
|
|
843 | 843 | |
|
|
844 | 844 | for nTries in range(tries): |
|
|
845 | 845 | if firstTime_flag: |
|
|
846 | 846 | print("\t[Reading] Waiting %0.2f sec for the next file: \"%s\" , try %03d ..." % (self.delay, filename, nTries + 1)) |
|
|
847 | 847 | sleep(self.delay) |
|
|
848 | 848 | else: |
|
|
849 | 849 | print("\t[Reading] Searching the next \"%s%04d%03d%03d%s\" file ..." % (self.optchar, self.year, self.doy, self.set, self.ext)) |
|
|
850 | 850 | |
|
|
851 | 851 | fullfilename, filename = checkForRealPath( |
|
|
852 | 852 | self.path, self.foldercounter, self.year, self.doy, self.set, self.ext) |
|
|
853 | 853 | if fullfilename: |
|
|
854 | 854 | if self.__verifyFile(fullfilename): |
|
|
855 | 855 | fileOk_flag = True |
|
|
856 | 856 | break |
|
|
857 | 857 | |
|
|
858 | 858 | if fileOk_flag: |
|
|
859 | 859 | break |
|
|
860 | 860 | |
|
|
861 | 861 | firstTime_flag = False |
|
|
862 | 862 | |
|
|
863 | 863 | log.warning('Skipping the file {} due to this file doesn\'t exist'.format(filename)) |
|
|
864 | 864 | self.set += 1 |
|
|
865 | 865 | |
|
|
866 | 866 | # si no encuentro el file buscado cambio de carpeta y busco en la siguiente carpeta |
|
|
867 | 867 | if nFiles == (self.nFiles - 1): |
|
|
868 | 868 | self.set = 0 |
|
|
869 | 869 | self.doy += 1 |
|
|
870 | 870 | self.foldercounter = 0 |
|
|
871 | 871 | |
|
|
872 | 872 | if fileOk_flag: |
|
|
873 | 873 | self.fileSize = os.path.getsize(fullfilename) |
|
|
874 | 874 | self.filename = fullfilename |
|
|
875 | 875 | self.flagIsNewFile = 1 |
|
|
876 | 876 | if self.fp != None: |
|
|
877 | 877 | self.fp.close() |
|
|
878 | 878 | self.fp = open(fullfilename, 'rb') |
|
|
879 | 879 | self.flagNoMoreFiles = 0 |
|
|
880 | 880 | # print '[Reading] Setting the file: %s' % fullfilename |
|
|
881 | 881 | else: |
|
|
882 | 882 | self.fileSize = 0 |
|
|
883 | 883 | self.filename = None |
|
|
884 | 884 | self.flagIsNewFile = 0 |
|
|
885 | 885 | self.fp = None |
|
|
886 | 886 | self.flagNoMoreFiles = 1 |
|
|
887 | 887 | # print '[Reading] No more files to read' |
|
|
888 | 888 | |
|
|
889 | 889 | return fileOk_flag |
|
|
890 | 890 | |
|
|
891 | 891 | def setNextFile(self): |
|
|
892 | 892 | if self.fp != None: |
|
|
893 | 893 | self.fp.close() |
|
|
894 | 894 | |
|
|
895 | 895 | if self.online: |
|
|
896 | 896 | newFile = self.__setNextFileOnline() |
|
|
897 | 897 | else: |
|
|
898 | 898 | newFile = self.__setNextFileOffline() |
|
|
899 | 899 | |
|
|
900 | 900 | if not(newFile): |
|
|
901 |
self.dataOut.error = |
|
|
|
901 | self.dataOut.error = 'No more files to read' | |
|
|
902 | 902 | return 0 |
|
|
903 | 903 | |
|
|
904 | 904 | if self.verbose: |
|
|
905 | 905 | print('[Reading] Setting the file: %s' % self.filename) |
|
|
906 | 906 | |
|
|
907 | 907 | self.__readFirstHeader() |
|
|
908 | 908 | self.nReadBlocks = 0 |
|
|
909 | 909 | return 1 |
|
|
910 | 910 | |
|
|
911 | 911 | def __waitNewBlock(self): |
|
|
912 | 912 | """ |
|
|
913 | 913 | Return 1 si se encontro un nuevo bloque de datos, 0 de otra forma. |
|
|
914 | 914 | |
|
|
915 | 915 | Si el modo de lectura es OffLine siempre retorn 0 |
|
|
916 | 916 | """ |
|
|
917 | 917 | if not self.online: |
|
|
918 | 918 | return 0 |
|
|
919 | 919 | |
|
|
920 | 920 | if (self.nReadBlocks >= self.processingHeaderObj.dataBlocksPerFile): |
|
|
921 | 921 | return 0 |
|
|
922 | 922 | |
|
|
923 | 923 | currentPointer = self.fp.tell() |
|
|
924 | 924 | |
|
|
925 | 925 | neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize |
|
|
926 | 926 | |
|
|
927 | 927 | for nTries in range(self.nTries): |
|
|
928 | 928 | |
|
|
929 | 929 | self.fp.close() |
|
|
930 | 930 | self.fp = open(self.filename, 'rb') |
|
|
931 | 931 | self.fp.seek(currentPointer) |
|
|
932 | 932 | |
|
|
933 | 933 | self.fileSize = os.path.getsize(self.filename) |
|
|
934 | 934 | currentSize = self.fileSize - currentPointer |
|
|
935 | 935 | |
|
|
936 | 936 | if (currentSize >= neededSize): |
|
|
937 | 937 | self.basicHeaderObj.read(self.fp) |
|
|
938 | 938 | return 1 |
|
|
939 | 939 | |
|
|
940 | 940 | if self.fileSize == self.fileSizeByHeader: |
|
|
941 | 941 | # self.flagEoF = True |
|
|
942 | 942 | return 0 |
|
|
943 | 943 | |
|
|
944 | 944 | print("[Reading] Waiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries + 1)) |
|
|
945 | 945 | sleep(self.delay) |
|
|
946 | 946 | |
|
|
947 | 947 | return 0 |
|
|
948 | 948 | |
|
|
949 | 949 | def waitDataBlock(self, pointer_location): |
|
|
950 | 950 | |
|
|
951 | 951 | currentPointer = pointer_location |
|
|
952 | 952 | |
|
|
953 | 953 | neededSize = self.processingHeaderObj.blockSize # + self.basicHeaderSize |
|
|
954 | 954 | |
|
|
955 | 955 | for nTries in range(self.nTries): |
|
|
956 | 956 | self.fp.close() |
|
|
957 | 957 | self.fp = open(self.filename, 'rb') |
|
|
958 | 958 | self.fp.seek(currentPointer) |
|
|
959 | 959 | |
|
|
960 | 960 | self.fileSize = os.path.getsize(self.filename) |
|
|
961 | 961 | currentSize = self.fileSize - currentPointer |
|
|
962 | 962 | |
|
|
963 | 963 | if (currentSize >= neededSize): |
|
|
964 | 964 | return 1 |
|
|
965 | 965 | |
|
|
966 | 966 | print("[Reading] Waiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries + 1)) |
|
|
967 | 967 | sleep(self.delay) |
|
|
968 | 968 | |
|
|
969 | 969 | return 0 |
|
|
970 | 970 | |
|
|
971 | 971 | def __jumpToLastBlock(self): |
|
|
972 | 972 | |
|
|
973 | 973 | if not(self.__isFirstTimeOnline): |
|
|
974 | 974 | return |
|
|
975 | 975 | |
|
|
976 | 976 | csize = self.fileSize - self.fp.tell() |
|
|
977 | 977 | blocksize = self.processingHeaderObj.blockSize |
|
|
978 | 978 | |
|
|
979 | 979 | # salta el primer bloque de datos |
|
|
980 | 980 | if csize > self.processingHeaderObj.blockSize: |
|
|
981 | 981 | self.fp.seek(self.fp.tell() + blocksize) |
|
|
982 | 982 | else: |
|
|
983 | 983 | return |
|
|
984 | 984 | |
|
|
985 | 985 | csize = self.fileSize - self.fp.tell() |
|
|
986 | 986 | neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize |
|
|
987 | 987 | while True: |
|
|
988 | 988 | |
|
|
989 | 989 | if self.fp.tell() < self.fileSize: |
|
|
990 | 990 | self.fp.seek(self.fp.tell() + neededsize) |
|
|
991 | 991 | else: |
|
|
992 | 992 | self.fp.seek(self.fp.tell() - neededsize) |
|
|
993 | 993 | break |
|
|
994 | 994 | |
|
|
995 | 995 | # csize = self.fileSize - self.fp.tell() |
|
|
996 | 996 | # neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize |
|
|
997 | 997 | # factor = int(csize/neededsize) |
|
|
998 | 998 | # if factor > 0: |
|
|
999 | 999 | # self.fp.seek(self.fp.tell() + factor*neededsize) |
|
|
1000 | 1000 | |
|
|
1001 | 1001 | self.flagIsNewFile = 0 |
|
|
1002 | 1002 | self.__isFirstTimeOnline = 0 |
|
|
1003 | 1003 | |
|
|
1004 | 1004 | def __setNewBlock(self): |
|
|
1005 | 1005 | # if self.server is None: |
|
|
1006 | 1006 | if self.fp == None: |
|
|
1007 | 1007 | return 0 |
|
|
1008 | 1008 | |
|
|
1009 | 1009 | # if self.online: |
|
|
1010 | 1010 | # self.__jumpToLastBlock() |
|
|
1011 | 1011 | |
|
|
1012 | 1012 | if self.flagIsNewFile: |
|
|
1013 | 1013 | self.lastUTTime = self.basicHeaderObj.utc |
|
|
1014 | 1014 | return 1 |
|
|
1015 | 1015 | |
|
|
1016 | 1016 | if self.realtime: |
|
|
1017 | 1017 | self.flagDiscontinuousBlock = 1 |
|
|
1018 | 1018 | if not(self.setNextFile()): |
|
|
1019 | 1019 | return 0 |
|
|
1020 | 1020 | else: |
|
|
1021 | 1021 | return 1 |
|
|
1022 | 1022 | # if self.server is None: |
|
|
1023 | 1023 | currentSize = self.fileSize - self.fp.tell() |
|
|
1024 | 1024 | neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize |
|
|
1025 | 1025 | if (currentSize >= neededSize): |
|
|
1026 | 1026 | self.basicHeaderObj.read(self.fp) |
|
|
1027 | 1027 | self.lastUTTime = self.basicHeaderObj.utc |
|
|
1028 | 1028 | return 1 |
|
|
1029 | 1029 | # else: |
|
|
1030 | 1030 | # self.basicHeaderObj.read(self.zHeader) |
|
|
1031 | 1031 | # self.lastUTTime = self.basicHeaderObj.utc |
|
|
1032 | 1032 | # return 1 |
|
|
1033 | 1033 | if self.__waitNewBlock(): |
|
|
1034 | 1034 | self.lastUTTime = self.basicHeaderObj.utc |
|
|
1035 | 1035 | return 1 |
|
|
1036 | 1036 | # if self.server is None: |
|
|
1037 | 1037 | if not(self.setNextFile()): |
|
|
1038 | 1038 | return 0 |
|
|
1039 | 1039 | |
|
|
1040 | 1040 | deltaTime = self.basicHeaderObj.utc - self.lastUTTime |
|
|
1041 | 1041 | self.lastUTTime = self.basicHeaderObj.utc |
|
|
1042 | 1042 | |
|
|
1043 | 1043 | self.flagDiscontinuousBlock = 0 |
|
|
1044 | 1044 | |
|
|
1045 | 1045 | if deltaTime > self.maxTimeStep: |
|
|
1046 | 1046 | self.flagDiscontinuousBlock = 1 |
|
|
1047 | 1047 | |
|
|
1048 | 1048 | return 1 |
|
|
1049 | 1049 | |
|
|
1050 | 1050 | def readNextBlock(self): |
|
|
1051 | 1051 | |
|
|
1052 | 1052 | # Skip block out of startTime and endTime |
|
|
1053 | 1053 | while True: |
|
|
1054 | 1054 | if not(self.__setNewBlock()): |
|
|
1055 |
self.dataOut.error = |
|
|
|
1055 | self.dataOut.error = 'No more files to read' | |
|
|
1056 | 1056 | return 0 |
|
|
1057 | 1057 | |
|
|
1058 | 1058 | if not(self.readBlock()): |
|
|
1059 | 1059 | return 0 |
|
|
1060 | 1060 | |
|
|
1061 | 1061 | self.getBasicHeader() |
|
|
1062 | 1062 | if (self.dataOut.datatime < datetime.datetime.combine(self.startDate, self.startTime)) or (self.dataOut.datatime > datetime.datetime.combine(self.endDate, self.endTime)): |
|
|
1063 | 1063 | print("[Reading] Block No. %d/%d -> %s [Skipping]" % (self.nReadBlocks, |
|
|
1064 | 1064 | self.processingHeaderObj.dataBlocksPerFile, |
|
|
1065 | 1065 | self.dataOut.datatime.ctime())) |
|
|
1066 | 1066 | continue |
|
|
1067 | 1067 | |
|
|
1068 | 1068 | break |
|
|
1069 | 1069 | |
|
|
1070 | 1070 | if self.verbose: |
|
|
1071 | 1071 | print("[Reading] Block No. %d/%d -> %s" % (self.nReadBlocks, |
|
|
1072 | 1072 | self.processingHeaderObj.dataBlocksPerFile, |
|
|
1073 | 1073 | self.dataOut.datatime.ctime())) |
|
|
1074 | 1074 | return 1 |
|
|
1075 | 1075 | |
|
|
1076 | 1076 | def __readFirstHeader(self): |
|
|
1077 | 1077 | |
|
|
1078 | 1078 | self.basicHeaderObj.read(self.fp) |
|
|
1079 | 1079 | self.systemHeaderObj.read(self.fp) |
|
|
1080 | 1080 | self.radarControllerHeaderObj.read(self.fp) |
|
|
1081 | 1081 | self.processingHeaderObj.read(self.fp) |
|
|
1082 | 1082 | |
|
|
1083 | 1083 | self.firstHeaderSize = self.basicHeaderObj.size |
|
|
1084 | 1084 | |
|
|
1085 | 1085 | datatype = int(numpy.log2((self.processingHeaderObj.processFlags & |
|
|
1086 | 1086 | PROCFLAG.DATATYPE_MASK)) - numpy.log2(PROCFLAG.DATATYPE_CHAR)) |
|
|
1087 | 1087 | if datatype == 0: |
|
|
1088 | 1088 | datatype_str = numpy.dtype([('real', '<i1'), ('imag', '<i1')]) |
|
|
1089 | 1089 | elif datatype == 1: |
|
|
1090 | 1090 | datatype_str = numpy.dtype([('real', '<i2'), ('imag', '<i2')]) |
|
|
1091 | 1091 | elif datatype == 2: |
|
|
1092 | 1092 | datatype_str = numpy.dtype([('real', '<i4'), ('imag', '<i4')]) |
|
|
1093 | 1093 | elif datatype == 3: |
|
|
1094 | 1094 | datatype_str = numpy.dtype([('real', '<i8'), ('imag', '<i8')]) |
|
|
1095 | 1095 | elif datatype == 4: |
|
|
1096 | 1096 | datatype_str = numpy.dtype([('real', '<f4'), ('imag', '<f4')]) |
|
|
1097 | 1097 | elif datatype == 5: |
|
|
1098 | 1098 | datatype_str = numpy.dtype([('real', '<f8'), ('imag', '<f8')]) |
|
|
1099 | 1099 | else: |
|
|
1100 | 1100 | raise ValueError('Data type was not defined') |
|
|
1101 | 1101 | |
|
|
1102 | 1102 | self.dtype = datatype_str |
|
|
1103 | 1103 | #self.ippSeconds = 2 * 1000 * self.radarControllerHeaderObj.ipp / self.c |
|
|
1104 | 1104 | self.fileSizeByHeader = self.processingHeaderObj.dataBlocksPerFile * self.processingHeaderObj.blockSize + \ |
|
|
1105 | 1105 | self.firstHeaderSize + self.basicHeaderSize * \ |
|
|
1106 | 1106 | (self.processingHeaderObj.dataBlocksPerFile - 1) |
|
|
1107 | 1107 | # self.dataOut.channelList = numpy.arange(self.systemHeaderObj.numChannels) |
|
|
1108 | 1108 | # self.dataOut.channelIndexList = numpy.arange(self.systemHeaderObj.numChannels) |
|
|
1109 | 1109 | self.getBlockDimension() |
|
|
1110 | 1110 | |
|
|
1111 | 1111 | def __verifyFile(self, filename, msgFlag=True): |
|
|
1112 | 1112 | |
|
|
1113 | 1113 | msg = None |
|
|
1114 | 1114 | |
|
|
1115 | 1115 | try: |
|
|
1116 | 1116 | fp = open(filename, 'rb') |
|
|
1117 | 1117 | except IOError: |
|
|
1118 | 1118 | |
|
|
1119 | 1119 | if msgFlag: |
|
|
1120 | 1120 | print("[Reading] File %s can't be opened" % (filename)) |
|
|
1121 | 1121 | |
|
|
1122 | 1122 | return False |
|
|
1123 | 1123 | |
|
|
1124 | 1124 | currentPosition = fp.tell() |
|
|
1125 | 1125 | neededSize = self.processingHeaderObj.blockSize + self.firstHeaderSize |
|
|
1126 | 1126 | |
|
|
1127 | 1127 | if neededSize == 0: |
|
|
1128 | 1128 | basicHeaderObj = BasicHeader(LOCALTIME) |
|
|
1129 | 1129 | systemHeaderObj = SystemHeader() |
|
|
1130 | 1130 | radarControllerHeaderObj = RadarControllerHeader() |
|
|
1131 | 1131 | processingHeaderObj = ProcessingHeader() |
|
|
1132 | 1132 | |
|
|
1133 | 1133 | if not(basicHeaderObj.read(fp)): |
|
|
1134 | 1134 | fp.close() |
|
|
1135 | 1135 | return False |
|
|
1136 | 1136 | |
|
|
1137 | 1137 | if not(systemHeaderObj.read(fp)): |
|
|
1138 | 1138 | fp.close() |
|
|
1139 | 1139 | return False |
|
|
1140 | 1140 | |
|
|
1141 | 1141 | if not(radarControllerHeaderObj.read(fp)): |
|
|
1142 | 1142 | fp.close() |
|
|
1143 | 1143 | return False |
|
|
1144 | 1144 | |
|
|
1145 | 1145 | if not(processingHeaderObj.read(fp)): |
|
|
1146 | 1146 | fp.close() |
|
|
1147 | 1147 | return False |
|
|
1148 | 1148 | |
|
|
1149 | 1149 | neededSize = processingHeaderObj.blockSize + basicHeaderObj.size |
|
|
1150 | 1150 | else: |
|
|
1151 | 1151 | msg = "[Reading] Skipping the file %s due to it hasn't enough data" % filename |
|
|
1152 | 1152 | |
|
|
1153 | 1153 | fp.close() |
|
|
1154 | 1154 | |
|
|
1155 | 1155 | fileSize = os.path.getsize(filename) |
|
|
1156 | 1156 | currentSize = fileSize - currentPosition |
|
|
1157 | 1157 | |
|
|
1158 | 1158 | if currentSize < neededSize: |
|
|
1159 | 1159 | if msgFlag and (msg != None): |
|
|
1160 | 1160 | print(msg) |
|
|
1161 | 1161 | return False |
|
|
1162 | 1162 | |
|
|
1163 | 1163 | return True |
|
|
1164 | 1164 | |
|
|
1165 | 1165 | def findDatafiles(self, path, startDate=None, endDate=None, expLabel='', ext='.r', walk=True, include_path=False): |
|
|
1166 | 1166 | |
|
|
1167 | 1167 | path_empty = True |
|
|
1168 | 1168 | |
|
|
1169 | 1169 | dateList = [] |
|
|
1170 | 1170 | pathList = [] |
|
|
1171 | 1171 | |
|
|
1172 | 1172 | multi_path = path.split(',') |
|
|
1173 | 1173 | |
|
|
1174 | 1174 | if not walk: |
|
|
1175 | 1175 | |
|
|
1176 | 1176 | for single_path in multi_path: |
|
|
1177 | 1177 | |
|
|
1178 | 1178 | if not os.path.isdir(single_path): |
|
|
1179 | 1179 | continue |
|
|
1180 | 1180 | |
|
|
1181 | 1181 | fileList = glob.glob1(single_path, "*" + ext) |
|
|
1182 | 1182 | |
|
|
1183 | 1183 | if not fileList: |
|
|
1184 | 1184 | continue |
|
|
1185 | 1185 | |
|
|
1186 | 1186 | path_empty = False |
|
|
1187 | 1187 | |
|
|
1188 | 1188 | fileList.sort() |
|
|
1189 | 1189 | |
|
|
1190 | 1190 | for thisFile in fileList: |
|
|
1191 | 1191 | |
|
|
1192 | 1192 | if not os.path.isfile(os.path.join(single_path, thisFile)): |
|
|
1193 | 1193 | continue |
|
|
1194 | 1194 | |
|
|
1195 | 1195 | if not isRadarFile(thisFile): |
|
|
1196 | 1196 | continue |
|
|
1197 | 1197 | |
|
|
1198 | 1198 | if not isFileInDateRange(thisFile, startDate, endDate): |
|
|
1199 | 1199 | continue |
|
|
1200 | 1200 | |
|
|
1201 | 1201 | thisDate = getDateFromRadarFile(thisFile) |
|
|
1202 | 1202 | |
|
|
1203 | 1203 | if thisDate in dateList: |
|
|
1204 | 1204 | continue |
|
|
1205 | 1205 | |
|
|
1206 | 1206 | dateList.append(thisDate) |
|
|
1207 | 1207 | pathList.append(single_path) |
|
|
1208 | 1208 | |
|
|
1209 | 1209 | else: |
|
|
1210 | 1210 | for single_path in multi_path: |
|
|
1211 | 1211 | |
|
|
1212 | 1212 | if not os.path.isdir(single_path): |
|
|
1213 | 1213 | continue |
|
|
1214 | 1214 | |
|
|
1215 | 1215 | dirList = [] |
|
|
1216 | 1216 | |
|
|
1217 | 1217 | for thisPath in os.listdir(single_path): |
|
|
1218 | 1218 | |
|
|
1219 | 1219 | if not os.path.isdir(os.path.join(single_path, thisPath)): |
|
|
1220 | 1220 | continue |
|
|
1221 | 1221 | |
|
|
1222 | 1222 | if not isRadarFolder(thisPath): |
|
|
1223 | 1223 | continue |
|
|
1224 | 1224 | |
|
|
1225 | 1225 | if not isFolderInDateRange(thisPath, startDate, endDate): |
|
|
1226 | 1226 | continue |
|
|
1227 | 1227 | |
|
|
1228 | 1228 | dirList.append(thisPath) |
|
|
1229 | 1229 | |
|
|
1230 | 1230 | if not dirList: |
|
|
1231 | 1231 | continue |
|
|
1232 | 1232 | |
|
|
1233 | 1233 | dirList.sort() |
|
|
1234 | 1234 | |
|
|
1235 | 1235 | for thisDir in dirList: |
|
|
1236 | 1236 | |
|
|
1237 | 1237 | datapath = os.path.join(single_path, thisDir, expLabel) |
|
|
1238 | 1238 | fileList = glob.glob1(datapath, "*" + ext) |
|
|
1239 | 1239 | |
|
|
1240 | 1240 | if not fileList: |
|
|
1241 | 1241 | continue |
|
|
1242 | 1242 | |
|
|
1243 | 1243 | path_empty = False |
|
|
1244 | 1244 | |
|
|
1245 | 1245 | thisDate = getDateFromRadarFolder(thisDir) |
|
|
1246 | 1246 | |
|
|
1247 | 1247 | pathList.append(datapath) |
|
|
1248 | 1248 | dateList.append(thisDate) |
|
|
1249 | 1249 | |
|
|
1250 | 1250 | dateList.sort() |
|
|
1251 | 1251 | |
|
|
1252 | 1252 | if walk: |
|
|
1253 | 1253 | pattern_path = os.path.join(multi_path[0], "[dYYYYDDD]", expLabel) |
|
|
1254 | 1254 | else: |
|
|
1255 | 1255 | pattern_path = multi_path[0] |
|
|
1256 | 1256 | |
|
|
1257 | 1257 | if path_empty: |
|
|
1258 | 1258 | print("[Reading] No *%s files in %s for %s to %s" % (ext, pattern_path, startDate, endDate)) |
|
|
1259 | 1259 | else: |
|
|
1260 | 1260 | if not dateList: |
|
|
1261 | 1261 | print("[Reading] Date range selected invalid [%s - %s]: No *%s files in %s)" % (startDate, endDate, ext, path)) |
|
|
1262 | 1262 | |
|
|
1263 | 1263 | if include_path: |
|
|
1264 | 1264 | return dateList, pathList |
|
|
1265 | 1265 | |
|
|
1266 | 1266 | return dateList |
|
|
1267 | 1267 | |
|
|
1268 | 1268 | def setup(self, |
|
|
1269 | 1269 | path=None, |
|
|
1270 | 1270 | startDate=None, |
|
|
1271 | 1271 | endDate=None, |
|
|
1272 | 1272 | startTime=datetime.time(0, 0, 0), |
|
|
1273 | 1273 | endTime=datetime.time(23, 59, 59), |
|
|
1274 | 1274 | set=None, |
|
|
1275 | 1275 | expLabel="", |
|
|
1276 | 1276 | ext=None, |
|
|
1277 | 1277 | online=False, |
|
|
1278 | 1278 | delay=60, |
|
|
1279 | 1279 | walk=True, |
|
|
1280 | 1280 | getblock=False, |
|
|
1281 | 1281 | nTxs=1, |
|
|
1282 | 1282 | realtime=False, |
|
|
1283 | 1283 | blocksize=None, |
|
|
1284 | 1284 | blocktime=None, |
|
|
1285 | 1285 | skip=None, |
|
|
1286 | 1286 | cursor=None, |
|
|
1287 | 1287 | warnings=True, |
|
|
1288 | 1288 | verbose=True, |
|
|
1289 | 1289 | server=None, |
|
|
1290 | 1290 | format=None, |
|
|
1291 | 1291 | oneDDict=None, |
|
|
1292 | 1292 | twoDDict=None, |
|
|
1293 | 1293 | ind2DList=None): |
|
|
1294 | 1294 | if server is not None: |
|
|
1295 | 1295 | if 'tcp://' in server: |
|
|
1296 | 1296 | address = server |
|
|
1297 | 1297 | else: |
|
|
1298 | 1298 | address = 'ipc:///tmp/%s' % server |
|
|
1299 | 1299 | self.server = address |
|
|
1300 | 1300 | self.context = zmq.Context() |
|
|
1301 | 1301 | self.receiver = self.context.socket(zmq.PULL) |
|
|
1302 | 1302 | self.receiver.connect(self.server) |
|
|
1303 | 1303 | time.sleep(0.5) |
|
|
1304 | 1304 | print('[Starting] ReceiverData from {}'.format(self.server)) |
|
|
1305 | 1305 | else: |
|
|
1306 | 1306 | self.server = None |
|
|
1307 | 1307 | if path == None: |
|
|
1308 | 1308 | raise ValueError("[Reading] The path is not valid") |
|
|
1309 | 1309 | |
|
|
1310 | 1310 | if ext == None: |
|
|
1311 | 1311 | ext = self.ext |
|
|
1312 | 1312 | |
|
|
1313 | 1313 | if online: |
|
|
1314 | 1314 | print("[Reading] Searching files in online mode...") |
|
|
1315 | 1315 | |
|
|
1316 | 1316 | for nTries in range(self.nTries): |
|
|
1317 | 1317 | fullpath, foldercounter, file, year, doy, set = self.__searchFilesOnLine( |
|
|
1318 | 1318 | path=path, expLabel=expLabel, ext=ext, walk=walk, set=set) |
|
|
1319 | 1319 | |
|
|
1320 | 1320 | if fullpath: |
|
|
1321 | 1321 | break |
|
|
1322 | 1322 | |
|
|
1323 | 1323 | print('[Reading] Waiting %0.2f sec for an valid file in %s: try %02d ...' % (self.delay, path, nTries + 1)) |
|
|
1324 | 1324 | sleep(self.delay) |
|
|
1325 | 1325 | |
|
|
1326 | 1326 | if not(fullpath): |
|
|
1327 |
self.dataOut.error = |
|
|
|
1327 | self.dataOut.error = 'There isn\'t any valid file in {}'.format(path) | |
|
|
1328 | 1328 | return |
|
|
1329 | 1329 | |
|
|
1330 | 1330 | self.year = year |
|
|
1331 | 1331 | self.doy = doy |
|
|
1332 | 1332 | self.set = set - 1 |
|
|
1333 | 1333 | self.path = path |
|
|
1334 | 1334 | self.foldercounter = foldercounter |
|
|
1335 | 1335 | last_set = None |
|
|
1336 | 1336 | else: |
|
|
1337 | 1337 | print("[Reading] Searching files in offline mode ...") |
|
|
1338 | 1338 | pathList, filenameList = self.searchFilesOffLine(path, startDate=startDate, endDate=endDate, |
|
|
1339 | 1339 | startTime=startTime, endTime=endTime, |
|
|
1340 | 1340 | set=set, expLabel=expLabel, ext=ext, |
|
|
1341 | 1341 | walk=walk, cursor=cursor, |
|
|
1342 | 1342 | skip=skip) |
|
|
1343 | 1343 | |
|
|
1344 | 1344 | if not(pathList): |
|
|
1345 | 1345 | self.fileIndex = -1 |
|
|
1346 | 1346 | self.pathList = [] |
|
|
1347 | 1347 | self.filenameList = [] |
|
|
1348 | 1348 | return |
|
|
1349 | 1349 | |
|
|
1350 | 1350 | self.fileIndex = -1 |
|
|
1351 | 1351 | self.pathList = pathList |
|
|
1352 | 1352 | self.filenameList = filenameList |
|
|
1353 | 1353 | file_name = os.path.basename(filenameList[-1]) |
|
|
1354 | 1354 | basename, ext = os.path.splitext(file_name) |
|
|
1355 | 1355 | last_set = int(basename[-3:]) |
|
|
1356 | 1356 | |
|
|
1357 | 1357 | self.online = online |
|
|
1358 | 1358 | self.realtime = realtime |
|
|
1359 | 1359 | self.delay = delay |
|
|
1360 | 1360 | ext = ext.lower() |
|
|
1361 | 1361 | self.ext = ext |
|
|
1362 | 1362 | self.getByBlock = getblock |
|
|
1363 | 1363 | self.nTxs = nTxs |
|
|
1364 | 1364 | self.startTime = startTime |
|
|
1365 | 1365 | self.endTime = endTime |
|
|
1366 | 1366 | self.endDate = endDate |
|
|
1367 | 1367 | self.startDate = startDate |
|
|
1368 | 1368 | # Added----------------- |
|
|
1369 | 1369 | self.selBlocksize = blocksize |
|
|
1370 | 1370 | self.selBlocktime = blocktime |
|
|
1371 | 1371 | |
|
|
1372 | 1372 | # Verbose----------- |
|
|
1373 | 1373 | self.verbose = verbose |
|
|
1374 | 1374 | self.warnings = warnings |
|
|
1375 | 1375 | |
|
|
1376 | 1376 | if not(self.setNextFile()): |
|
|
1377 | 1377 | if (startDate != None) and (endDate != None): |
|
|
1378 | 1378 | print("[Reading] No files in range: %s - %s" % (datetime.datetime.combine(startDate, startTime).ctime(), datetime.datetime.combine(endDate, endTime).ctime())) |
|
|
1379 | 1379 | elif startDate != None: |
|
|
1380 | 1380 | print("[Reading] No files in range: %s" % (datetime.datetime.combine(startDate, startTime).ctime())) |
|
|
1381 | 1381 | else: |
|
|
1382 | 1382 | print("[Reading] No files") |
|
|
1383 | 1383 | |
|
|
1384 | 1384 | self.fileIndex = -1 |
|
|
1385 | 1385 | self.pathList = [] |
|
|
1386 | 1386 | self.filenameList = [] |
|
|
1387 | 1387 | return |
|
|
1388 | 1388 | |
|
|
1389 | 1389 | # self.getBasicHeader() |
|
|
1390 | 1390 | |
|
|
1391 | 1391 | if last_set != None: |
|
|
1392 | 1392 | self.dataOut.last_block = last_set * \ |
|
|
1393 | 1393 | self.processingHeaderObj.dataBlocksPerFile + self.basicHeaderObj.dataBlock |
|
|
1394 | 1394 | return |
|
|
1395 | 1395 | |
|
|
1396 | 1396 | def getBasicHeader(self): |
|
|
1397 | 1397 | |
|
|
1398 | 1398 | self.dataOut.utctime = self.basicHeaderObj.utc + self.basicHeaderObj.miliSecond / \ |
|
|
1399 | 1399 | 1000. + self.profileIndex * self.radarControllerHeaderObj.ippSeconds |
|
|
1400 | 1400 | |
|
|
1401 | 1401 | self.dataOut.flagDiscontinuousBlock = self.flagDiscontinuousBlock |
|
|
1402 | 1402 | |
|
|
1403 | 1403 | self.dataOut.timeZone = self.basicHeaderObj.timeZone |
|
|
1404 | 1404 | |
|
|
1405 | 1405 | self.dataOut.dstFlag = self.basicHeaderObj.dstFlag |
|
|
1406 | 1406 | |
|
|
1407 | 1407 | self.dataOut.errorCount = self.basicHeaderObj.errorCount |
|
|
1408 | 1408 | |
|
|
1409 | 1409 | self.dataOut.useLocalTime = self.basicHeaderObj.useLocalTime |
|
|
1410 | 1410 | |
|
|
1411 | 1411 | self.dataOut.ippSeconds = self.radarControllerHeaderObj.ippSeconds / self.nTxs |
|
|
1412 | 1412 | |
|
|
1413 | 1413 | # self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock*self.nTxs |
|
|
1414 | 1414 | |
|
|
1415 | 1415 | def getFirstHeader(self): |
|
|
1416 | 1416 | |
|
|
1417 | 1417 | raise NotImplementedError |
|
|
1418 | 1418 | |
|
|
1419 | 1419 | def getData(self): |
|
|
1420 | 1420 | |
|
|
1421 | 1421 | raise NotImplementedError |
|
|
1422 | 1422 | |
|
|
1423 | 1423 | def hasNotDataInBuffer(self): |
|
|
1424 | 1424 | |
|
|
1425 | 1425 | raise NotImplementedError |
|
|
1426 | 1426 | |
|
|
1427 | 1427 | def readBlock(self): |
|
|
1428 | 1428 | |
|
|
1429 | 1429 | raise NotImplementedError |
|
|
1430 | 1430 | |
|
|
1431 | 1431 | def isEndProcess(self): |
|
|
1432 | 1432 | |
|
|
1433 | 1433 | return self.flagNoMoreFiles |
|
|
1434 | 1434 | |
|
|
1435 | 1435 | def printReadBlocks(self): |
|
|
1436 | 1436 | |
|
|
1437 | 1437 | print("[Reading] Number of read blocks per file %04d" % self.nReadBlocks) |
|
|
1438 | 1438 | |
|
|
1439 | 1439 | def printTotalBlocks(self): |
|
|
1440 | 1440 | |
|
|
1441 | 1441 | print("[Reading] Number of read blocks %04d" % self.nTotalBlocks) |
|
|
1442 | 1442 | |
|
|
1443 | 1443 | def printNumberOfBlock(self): |
|
|
1444 | 1444 | 'SPAM!' |
|
|
1445 | 1445 | |
|
|
1446 | 1446 | # if self.flagIsNewBlock: |
|
|
1447 | 1447 | # print "[Reading] Block No. %d/%d -> %s" %(self.nReadBlocks, |
|
|
1448 | 1448 | # self.processingHeaderObj.dataBlocksPerFile, |
|
|
1449 | 1449 | # self.dataOut.datatime.ctime()) |
|
|
1450 | 1450 | |
|
|
1451 | 1451 | def printInfo(self): |
|
|
1452 | 1452 | |
|
|
1453 | 1453 | if self.__printInfo == False: |
|
|
1454 | 1454 | return |
|
|
1455 | 1455 | |
|
|
1456 | 1456 | self.basicHeaderObj.printInfo() |
|
|
1457 | 1457 | self.systemHeaderObj.printInfo() |
|
|
1458 | 1458 | self.radarControllerHeaderObj.printInfo() |
|
|
1459 | 1459 | self.processingHeaderObj.printInfo() |
|
|
1460 | 1460 | |
|
|
1461 | 1461 | self.__printInfo = False |
|
|
1462 | 1462 | |
|
|
1463 | 1463 | def run(self, |
|
|
1464 | 1464 | path=None, |
|
|
1465 | 1465 | startDate=None, |
|
|
1466 | 1466 | endDate=None, |
|
|
1467 | 1467 | startTime=datetime.time(0, 0, 0), |
|
|
1468 | 1468 | endTime=datetime.time(23, 59, 59), |
|
|
1469 | 1469 | set=None, |
|
|
1470 | 1470 | expLabel="", |
|
|
1471 | 1471 | ext=None, |
|
|
1472 | 1472 | online=False, |
|
|
1473 | 1473 | delay=60, |
|
|
1474 | 1474 | walk=True, |
|
|
1475 | 1475 | getblock=False, |
|
|
1476 | 1476 | nTxs=1, |
|
|
1477 | 1477 | realtime=False, |
|
|
1478 | 1478 | blocksize=None, |
|
|
1479 | 1479 | blocktime=None, |
|
|
1480 | 1480 | skip=None, |
|
|
1481 | 1481 | cursor=None, |
|
|
1482 | 1482 | warnings=True, |
|
|
1483 | 1483 | server=None, |
|
|
1484 | 1484 | verbose=True, |
|
|
1485 | 1485 | format=None, |
|
|
1486 | 1486 | oneDDict=None, |
|
|
1487 | 1487 | twoDDict=None, |
|
|
1488 | 1488 | ind2DList=None, **kwargs): |
|
|
1489 | 1489 | |
|
|
1490 | 1490 | if not(self.isConfig): |
|
|
1491 | 1491 | self.setup(path=path, |
|
|
1492 | 1492 | startDate=startDate, |
|
|
1493 | 1493 | endDate=endDate, |
|
|
1494 | 1494 | startTime=startTime, |
|
|
1495 | 1495 | endTime=endTime, |
|
|
1496 | 1496 | set=set, |
|
|
1497 | 1497 | expLabel=expLabel, |
|
|
1498 | 1498 | ext=ext, |
|
|
1499 | 1499 | online=online, |
|
|
1500 | 1500 | delay=delay, |
|
|
1501 | 1501 | walk=walk, |
|
|
1502 | 1502 | getblock=getblock, |
|
|
1503 | 1503 | nTxs=nTxs, |
|
|
1504 | 1504 | realtime=realtime, |
|
|
1505 | 1505 | blocksize=blocksize, |
|
|
1506 | 1506 | blocktime=blocktime, |
|
|
1507 | 1507 | skip=skip, |
|
|
1508 | 1508 | cursor=cursor, |
|
|
1509 | 1509 | warnings=warnings, |
|
|
1510 | 1510 | server=server, |
|
|
1511 | 1511 | verbose=verbose, |
|
|
1512 | 1512 | format=format, |
|
|
1513 | 1513 | oneDDict=oneDDict, |
|
|
1514 | 1514 | twoDDict=twoDDict, |
|
|
1515 | 1515 | ind2DList=ind2DList) |
|
|
1516 | 1516 | self.isConfig = True |
|
|
1517 | 1517 | if server is None: |
|
|
1518 | 1518 | self.getData() |
|
|
1519 | 1519 | else: |
|
|
1520 | 1520 | self.getFromServer() |
|
|
1521 | 1521 | |
|
|
1522 | 1522 | |
|
|
1523 | 1523 | class JRODataWriter(JRODataIO): |
|
|
1524 | 1524 | |
|
|
1525 | 1525 | """ |
|
|
1526 | 1526 | Esta clase permite escribir datos a archivos procesados (.r o ,pdata). La escritura |
|
|
1527 | 1527 | de los datos siempre se realiza por bloques. |
|
|
1528 | 1528 | """ |
|
|
1529 | 1529 | |
|
|
1530 | 1530 | blockIndex = 0 |
|
|
1531 | 1531 | |
|
|
1532 | 1532 | path = None |
|
|
1533 | 1533 | |
|
|
1534 | 1534 | setFile = None |
|
|
1535 | 1535 | |
|
|
1536 | 1536 | profilesPerBlock = None |
|
|
1537 | 1537 | |
|
|
1538 | 1538 | blocksPerFile = None |
|
|
1539 | 1539 | |
|
|
1540 | 1540 | nWriteBlocks = 0 |
|
|
1541 | 1541 | |
|
|
1542 | 1542 | fileDate = None |
|
|
1543 | 1543 | |
|
|
1544 | 1544 | def __init__(self, dataOut=None): |
|
|
1545 | 1545 | raise NotImplementedError |
|
|
1546 | 1546 | |
|
|
1547 | 1547 | def hasAllDataInBuffer(self): |
|
|
1548 | 1548 | raise NotImplementedError |
|
|
1549 | 1549 | |
|
|
1550 | 1550 | def setBlockDimension(self): |
|
|
1551 | 1551 | raise NotImplementedError |
|
|
1552 | 1552 | |
|
|
1553 | 1553 | def writeBlock(self): |
|
|
1554 | 1554 | raise NotImplementedError |
|
|
1555 | 1555 | |
|
|
1556 | 1556 | def putData(self): |
|
|
1557 | 1557 | raise NotImplementedError |
|
|
1558 | 1558 | |
|
|
1559 | 1559 | def getProcessFlags(self): |
|
|
1560 | 1560 | |
|
|
1561 | 1561 | processFlags = 0 |
|
|
1562 | 1562 | |
|
|
1563 | 1563 | dtype_index = get_dtype_index(self.dtype) |
|
|
1564 | 1564 | procflag_dtype = get_procflag_dtype(dtype_index) |
|
|
1565 | 1565 | |
|
|
1566 | 1566 | processFlags += procflag_dtype |
|
|
1567 | 1567 | |
|
|
1568 | 1568 | if self.dataOut.flagDecodeData: |
|
|
1569 | 1569 | processFlags += PROCFLAG.DECODE_DATA |
|
|
1570 | 1570 | |
|
|
1571 | 1571 | if self.dataOut.flagDeflipData: |
|
|
1572 | 1572 | processFlags += PROCFLAG.DEFLIP_DATA |
|
|
1573 | 1573 | |
|
|
1574 | 1574 | if self.dataOut.code is not None: |
|
|
1575 | 1575 | processFlags += PROCFLAG.DEFINE_PROCESS_CODE |
|
|
1576 | 1576 | |
|
|
1577 | 1577 | if self.dataOut.nCohInt > 1: |
|
|
1578 | 1578 | processFlags += PROCFLAG.COHERENT_INTEGRATION |
|
|
1579 | 1579 | |
|
|
1580 | 1580 | if self.dataOut.type == "Spectra": |
|
|
1581 | 1581 | if self.dataOut.nIncohInt > 1: |
|
|
1582 | 1582 | processFlags += PROCFLAG.INCOHERENT_INTEGRATION |
|
|
1583 | 1583 | |
|
|
1584 | 1584 | if self.dataOut.data_dc is not None: |
|
|
1585 | 1585 | processFlags += PROCFLAG.SAVE_CHANNELS_DC |
|
|
1586 | 1586 | |
|
|
1587 | 1587 | if self.dataOut.flagShiftFFT: |
|
|
1588 | 1588 | processFlags += PROCFLAG.SHIFT_FFT_DATA |
|
|
1589 | 1589 | |
|
|
1590 | 1590 | return processFlags |
|
|
1591 | 1591 | |
|
|
1592 | 1592 | def setBasicHeader(self): |
|
|
1593 | 1593 | |
|
|
1594 | 1594 | self.basicHeaderObj.size = self.basicHeaderSize # bytes |
|
|
1595 | 1595 | self.basicHeaderObj.version = self.versionFile |
|
|
1596 | 1596 | self.basicHeaderObj.dataBlock = self.nTotalBlocks |
|
|
1597 | 1597 | |
|
|
1598 | 1598 | utc = numpy.floor(self.dataOut.utctime) |
|
|
1599 | 1599 | milisecond = (self.dataOut.utctime - utc) * 1000.0 |
|
|
1600 | 1600 | |
|
|
1601 | 1601 | self.basicHeaderObj.utc = utc |
|
|
1602 | 1602 | self.basicHeaderObj.miliSecond = milisecond |
|
|
1603 | 1603 | self.basicHeaderObj.timeZone = self.dataOut.timeZone |
|
|
1604 | 1604 | self.basicHeaderObj.dstFlag = self.dataOut.dstFlag |
|
|
1605 | 1605 | self.basicHeaderObj.errorCount = self.dataOut.errorCount |
|
|
1606 | 1606 | |
|
|
1607 | 1607 | def setFirstHeader(self): |
|
|
1608 | 1608 | """ |
|
|
1609 | 1609 | Obtiene una copia del First Header |
|
|
1610 | 1610 | |
|
|
1611 | 1611 | Affected: |
|
|
1612 | 1612 | |
|
|
1613 | 1613 | self.basicHeaderObj |
|
|
1614 | 1614 | self.systemHeaderObj |
|
|
1615 | 1615 | self.radarControllerHeaderObj |
|
|
1616 | 1616 | self.processingHeaderObj self. |
|
|
1617 | 1617 | |
|
|
1618 | 1618 | Return: |
|
|
1619 | 1619 | None |
|
|
1620 | 1620 | """ |
|
|
1621 | 1621 | |
|
|
1622 | 1622 | raise NotImplementedError |
|
|
1623 | 1623 | |
|
|
1624 | 1624 | def __writeFirstHeader(self): |
|
|
1625 | 1625 | """ |
|
|
1626 | 1626 | Escribe el primer header del file es decir el Basic header y el Long header (SystemHeader, RadarControllerHeader, ProcessingHeader) |
|
|
1627 | 1627 | |
|
|
1628 | 1628 | Affected: |
|
|
1629 | 1629 | __dataType |
|
|
1630 | 1630 | |
|
|
1631 | 1631 | Return: |
|
|
1632 | 1632 | None |
|
|
1633 | 1633 | """ |
|
|
1634 | 1634 | |
|
|
1635 | 1635 | # CALCULAR PARAMETROS |
|
|
1636 | 1636 | |
|
|
1637 | 1637 | sizeLongHeader = self.systemHeaderObj.size + \ |
|
|
1638 | 1638 | self.radarControllerHeaderObj.size + self.processingHeaderObj.size |
|
|
1639 | 1639 | self.basicHeaderObj.size = self.basicHeaderSize + sizeLongHeader |
|
|
1640 | 1640 | |
|
|
1641 | 1641 | self.basicHeaderObj.write(self.fp) |
|
|
1642 | 1642 | self.systemHeaderObj.write(self.fp) |
|
|
1643 | 1643 | self.radarControllerHeaderObj.write(self.fp) |
|
|
1644 | 1644 | self.processingHeaderObj.write(self.fp) |
|
|
1645 | 1645 | |
|
|
1646 | 1646 | def __setNewBlock(self): |
|
|
1647 | 1647 | """ |
|
|
1648 | 1648 | Si es un nuevo file escribe el First Header caso contrario escribe solo el Basic Header |
|
|
1649 | 1649 | |
|
|
1650 | 1650 | Return: |
|
|
1651 | 1651 | 0 : si no pudo escribir nada |
|
|
1652 | 1652 | 1 : Si escribio el Basic el First Header |
|
|
1653 | 1653 | """ |
|
|
1654 | 1654 | if self.fp == None: |
|
|
1655 | 1655 | self.setNextFile() |
|
|
1656 | 1656 | |
|
|
1657 | 1657 | if self.flagIsNewFile: |
|
|
1658 | 1658 | return 1 |
|
|
1659 | 1659 | |
|
|
1660 | 1660 | if self.blockIndex < self.processingHeaderObj.dataBlocksPerFile: |
|
|
1661 | 1661 | self.basicHeaderObj.write(self.fp) |
|
|
1662 | 1662 | return 1 |
|
|
1663 | 1663 | |
|
|
1664 | 1664 | if not(self.setNextFile()): |
|
|
1665 | 1665 | return 0 |
|
|
1666 | 1666 | |
|
|
1667 | 1667 | return 1 |
|
|
1668 | 1668 | |
|
|
1669 | 1669 | def writeNextBlock(self): |
|
|
1670 | 1670 | """ |
|
|
1671 | 1671 | Selecciona el bloque siguiente de datos y los escribe en un file |
|
|
1672 | 1672 | |
|
|
1673 | 1673 | Return: |
|
|
1674 | 1674 | 0 : Si no hizo pudo escribir el bloque de datos |
|
|
1675 | 1675 | 1 : Si no pudo escribir el bloque de datos |
|
|
1676 | 1676 | """ |
|
|
1677 | 1677 | if not(self.__setNewBlock()): |
|
|
1678 | 1678 | return 0 |
|
|
1679 | 1679 | |
|
|
1680 | 1680 | self.writeBlock() |
|
|
1681 | 1681 | |
|
|
1682 | 1682 | print("[Writing] Block No. %d/%d" % (self.blockIndex, |
|
|
1683 | 1683 | self.processingHeaderObj.dataBlocksPerFile)) |
|
|
1684 | 1684 | |
|
|
1685 | 1685 | return 1 |
|
|
1686 | 1686 | |
|
|
1687 | 1687 | def setNextFile(self): |
|
|
1688 | 1688 | """ |
|
|
1689 | 1689 | Determina el siguiente file que sera escrito |
|
|
1690 | 1690 | |
|
|
1691 | 1691 | Affected: |
|
|
1692 | 1692 | self.filename |
|
|
1693 | 1693 | self.subfolder |
|
|
1694 | 1694 | self.fp |
|
|
1695 | 1695 | self.setFile |
|
|
1696 | 1696 | self.flagIsNewFile |
|
|
1697 | 1697 | |
|
|
1698 | 1698 | Return: |
|
|
1699 | 1699 | 0 : Si el archivo no puede ser escrito |
|
|
1700 | 1700 | 1 : Si el archivo esta listo para ser escrito |
|
|
1701 | 1701 | """ |
|
|
1702 | 1702 | ext = self.ext |
|
|
1703 | 1703 | path = self.path |
|
|
1704 | 1704 | |
|
|
1705 | 1705 | if self.fp != None: |
|
|
1706 | 1706 | self.fp.close() |
|
|
1707 | 1707 | |
|
|
1708 | 1708 | timeTuple = time.localtime(self.dataOut.utctime) |
|
|
1709 | 1709 | subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year, timeTuple.tm_yday) |
|
|
1710 | 1710 | |
|
|
1711 | 1711 | fullpath = os.path.join(path, subfolder) |
|
|
1712 | 1712 | setFile = self.setFile |
|
|
1713 | 1713 | |
|
|
1714 | 1714 | if not(os.path.exists(fullpath)): |
|
|
1715 | 1715 | os.mkdir(fullpath) |
|
|
1716 | 1716 | setFile = -1 # inicializo mi contador de seteo |
|
|
1717 | 1717 | else: |
|
|
1718 | 1718 | filesList = os.listdir(fullpath) |
|
|
1719 | 1719 | if len(filesList) > 0: |
|
|
1720 | 1720 | filesList = sorted(filesList, key=str.lower) |
|
|
1721 | 1721 | filen = filesList[-1] |
|
|
1722 | 1722 | # el filename debera tener el siguiente formato |
|
|
1723 | 1723 | # 0 1234 567 89A BCDE (hex) |
|
|
1724 | 1724 | # x YYYY DDD SSS .ext |
|
|
1725 | 1725 | if isNumber(filen[8:11]): |
|
|
1726 | 1726 | # inicializo mi contador de seteo al seteo del ultimo file |
|
|
1727 | 1727 | setFile = int(filen[8:11]) |
|
|
1728 | 1728 | else: |
|
|
1729 | 1729 | setFile = -1 |
|
|
1730 | 1730 | else: |
|
|
1731 | 1731 | setFile = -1 # inicializo mi contador de seteo |
|
|
1732 | 1732 | |
|
|
1733 | 1733 | setFile += 1 |
|
|
1734 | 1734 | |
|
|
1735 | 1735 | # If this is a new day it resets some values |
|
|
1736 | 1736 | if self.dataOut.datatime.date() > self.fileDate: |
|
|
1737 | 1737 | setFile = 0 |
|
|
1738 | 1738 | self.nTotalBlocks = 0 |
|
|
1739 | 1739 | |
|
|
1740 | 1740 | filen = '{}{:04d}{:03d}{:03d}{}'.format( |
|
|
1741 | 1741 | self.optchar, timeTuple.tm_year, timeTuple.tm_yday, setFile, ext) |
|
|
1742 | 1742 | |
|
|
1743 | 1743 | filename = os.path.join(path, subfolder, filen) |
|
|
1744 | 1744 | |
|
|
1745 | 1745 | fp = open(filename, 'wb') |
|
|
1746 | 1746 | |
|
|
1747 | 1747 | self.blockIndex = 0 |
|
|
1748 | 1748 | |
|
|
1749 | 1749 | # guardando atributos |
|
|
1750 | 1750 | self.filename = filename |
|
|
1751 | 1751 | self.subfolder = subfolder |
|
|
1752 | 1752 | self.fp = fp |
|
|
1753 | 1753 | self.setFile = setFile |
|
|
1754 | 1754 | self.flagIsNewFile = 1 |
|
|
1755 | 1755 | self.fileDate = self.dataOut.datatime.date() |
|
|
1756 | 1756 | |
|
|
1757 | 1757 | self.setFirstHeader() |
|
|
1758 | 1758 | |
|
|
1759 | 1759 | print('[Writing] Opening file: %s' % self.filename) |
|
|
1760 | 1760 | |
|
|
1761 | 1761 | self.__writeFirstHeader() |
|
|
1762 | 1762 | |
|
|
1763 | 1763 | return 1 |
|
|
1764 | 1764 | |
|
|
1765 | 1765 | def setup(self, dataOut, path, blocksPerFile, profilesPerBlock=64, set=None, ext=None, datatype=4): |
|
|
1766 | 1766 | """ |
|
|
1767 | 1767 | Setea el tipo de formato en la cual sera guardada la data y escribe el First Header |
|
|
1768 | 1768 | |
|
|
1769 | 1769 | Inputs: |
|
|
1770 | 1770 | path : directory where data will be saved |
|
|
1771 | 1771 | profilesPerBlock : number of profiles per block |
|
|
1772 | 1772 | set : initial file set |
|
|
1773 | 1773 | datatype : An integer number that defines data type: |
|
|
1774 | 1774 | 0 : int8 (1 byte) |
|
|
1775 | 1775 | 1 : int16 (2 bytes) |
|
|
1776 | 1776 | 2 : int32 (4 bytes) |
|
|
1777 | 1777 | 3 : int64 (8 bytes) |
|
|
1778 | 1778 | 4 : float32 (4 bytes) |
|
|
1779 | 1779 | 5 : double64 (8 bytes) |
|
|
1780 | 1780 | |
|
|
1781 | 1781 | Return: |
|
|
1782 | 1782 | 0 : Si no realizo un buen seteo |
|
|
1783 | 1783 | 1 : Si realizo un buen seteo |
|
|
1784 | 1784 | """ |
|
|
1785 | 1785 | |
|
|
1786 | 1786 | if ext == None: |
|
|
1787 | 1787 | ext = self.ext |
|
|
1788 | 1788 | |
|
|
1789 | 1789 | self.ext = ext.lower() |
|
|
1790 | 1790 | |
|
|
1791 | 1791 | self.path = path |
|
|
1792 | 1792 | |
|
|
1793 | 1793 | if set is None: |
|
|
1794 | 1794 | self.setFile = -1 |
|
|
1795 | 1795 | else: |
|
|
1796 | 1796 | self.setFile = set - 1 |
|
|
1797 | 1797 | |
|
|
1798 | 1798 | self.blocksPerFile = blocksPerFile |
|
|
1799 | 1799 | |
|
|
1800 | 1800 | self.profilesPerBlock = profilesPerBlock |
|
|
1801 | 1801 | |
|
|
1802 | 1802 | self.dataOut = dataOut |
|
|
1803 | 1803 | self.fileDate = self.dataOut.datatime.date() |
|
|
1804 | 1804 | # By default |
|
|
1805 | 1805 | self.dtype = self.dataOut.dtype |
|
|
1806 | 1806 | |
|
|
1807 | 1807 | if datatype is not None: |
|
|
1808 | 1808 | self.dtype = get_numpy_dtype(datatype) |
|
|
1809 | 1809 | |
|
|
1810 | 1810 | if not(self.setNextFile()): |
|
|
1811 | 1811 | print("[Writing] There isn't a next file") |
|
|
1812 | 1812 | return 0 |
|
|
1813 | 1813 | |
|
|
1814 | 1814 | self.setBlockDimension() |
|
|
1815 | 1815 | |
|
|
1816 | 1816 | return 1 |
|
|
1817 | 1817 | |
|
|
1818 | 1818 | def run(self, dataOut, path, blocksPerFile=100, profilesPerBlock=64, set=None, ext=None, datatype=4, **kwargs): |
|
|
1819 | 1819 | |
|
|
1820 | 1820 | if not(self.isConfig): |
|
|
1821 | 1821 | |
|
|
1822 | 1822 | self.setup(dataOut, path, blocksPerFile, profilesPerBlock=profilesPerBlock, |
|
|
1823 | 1823 | set=set, ext=ext, datatype=datatype, **kwargs) |
|
|
1824 | 1824 | self.isConfig = True |
|
|
1825 | 1825 | |
|
|
1826 | 1826 | self.dataOut = dataOut |
|
|
1827 | 1827 | self.putData() |
|
|
1828 | 1828 | return self.dataOut No newline at end of file |
| @@ -1,797 +1,796 | |||
|
|
1 | 1 | |
|
|
2 | 2 | ''' |
|
|
3 | 3 | Created on Jul 3, 2014 |
|
|
4 | 4 | |
|
|
5 | 5 | @author: roj-idl71 |
|
|
6 | 6 | ''' |
|
|
7 | 7 | # SUBCHANNELS EN VEZ DE CHANNELS |
|
|
8 | 8 | # BENCHMARKS -> PROBLEMAS CON ARCHIVOS GRANDES -> INCONSTANTE EN EL TIEMPO |
|
|
9 | 9 | # ACTUALIZACION DE VERSION |
|
|
10 | 10 | # HEADERS |
|
|
11 | 11 | # MODULO DE ESCRITURA |
|
|
12 | 12 | # METADATA |
|
|
13 | 13 | |
|
|
14 | 14 | import os |
|
|
15 | 15 | import datetime |
|
|
16 | 16 | import numpy |
|
|
17 | 17 | import timeit |
|
|
18 | 18 | from fractions import Fraction |
|
|
19 | 19 | |
|
|
20 | 20 | try: |
|
|
21 | 21 | from gevent import sleep |
|
|
22 | 22 | except: |
|
|
23 | 23 | from time import sleep |
|
|
24 | 24 | |
|
|
25 | 25 | from schainpy.model.data.jroheaderIO import RadarControllerHeader, SystemHeader |
|
|
26 | 26 | from schainpy.model.data.jrodata import Voltage |
|
|
27 | 27 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator |
|
|
28 | 28 | from time import time |
|
|
29 | 29 | |
|
|
30 | 30 | import pickle |
|
|
31 | 31 | try: |
|
|
32 | 32 | import digital_rf |
|
|
33 | 33 | except: |
|
|
34 | 34 | print('You should install "digital_rf" module if you want to read Digital RF data') |
|
|
35 | 35 | |
|
|
36 | 36 | @MPDecorator |
|
|
37 | 37 | class DigitalRFReader(ProcessingUnit): |
|
|
38 | 38 | ''' |
|
|
39 | 39 | classdocs |
|
|
40 | 40 | ''' |
|
|
41 | 41 | |
|
|
42 | 42 | def __init__(self): |
|
|
43 | 43 | ''' |
|
|
44 | 44 | Constructor |
|
|
45 | 45 | ''' |
|
|
46 | 46 | |
|
|
47 | 47 | ProcessingUnit.__init__(self) |
|
|
48 | 48 | |
|
|
49 | 49 | self.dataOut = Voltage() |
|
|
50 | 50 | self.__printInfo = True |
|
|
51 | 51 | self.__flagDiscontinuousBlock = False |
|
|
52 | 52 | self.__bufferIndex = 9999999 |
|
|
53 | 53 | self.__ippKm = None |
|
|
54 | 54 | self.__codeType = 0 |
|
|
55 | 55 | self.__nCode = None |
|
|
56 | 56 | self.__nBaud = None |
|
|
57 | 57 | self.__code = None |
|
|
58 | 58 | self.dtype = None |
|
|
59 | 59 | self.oldAverage = None |
|
|
60 | 60 | |
|
|
61 | 61 | def close(self): |
|
|
62 | 62 | print('Average of writing to digital rf format is ', self.oldAverage * 1000) |
|
|
63 | 63 | return |
|
|
64 | 64 | |
|
|
65 | 65 | def __getCurrentSecond(self): |
|
|
66 | 66 | |
|
|
67 | 67 | return self.__thisUnixSample / self.__sample_rate |
|
|
68 | 68 | |
|
|
69 | 69 | thisSecond = property(__getCurrentSecond, "I'm the 'thisSecond' property.") |
|
|
70 | 70 | |
|
|
71 | 71 | def __setFileHeader(self): |
|
|
72 | 72 | ''' |
|
|
73 | 73 | In this method will be initialized every parameter of dataOut object (header, no data) |
|
|
74 | 74 | ''' |
|
|
75 | 75 | ippSeconds = 1.0 * self.__nSamples / self.__sample_rate |
|
|
76 | 76 | |
|
|
77 | 77 | nProfiles = 1.0 / ippSeconds # Number of profiles in one second |
|
|
78 | 78 | |
|
|
79 | 79 | try: |
|
|
80 | 80 | self.dataOut.radarControllerHeaderObj = RadarControllerHeader( |
|
|
81 | 81 | self.__radarControllerHeader) |
|
|
82 | 82 | except: |
|
|
83 | 83 | self.dataOut.radarControllerHeaderObj = RadarControllerHeader( |
|
|
84 | 84 | txA=0, |
|
|
85 | 85 | txB=0, |
|
|
86 | 86 | nWindows=1, |
|
|
87 | 87 | nHeights=self.__nSamples, |
|
|
88 | 88 | firstHeight=self.__firstHeigth, |
|
|
89 | 89 | deltaHeight=self.__deltaHeigth, |
|
|
90 | 90 | codeType=self.__codeType, |
|
|
91 | 91 | nCode=self.__nCode, nBaud=self.__nBaud, |
|
|
92 | 92 | code=self.__code) |
|
|
93 | 93 | |
|
|
94 | 94 | try: |
|
|
95 | 95 | self.dataOut.systemHeaderObj = SystemHeader(self.__systemHeader) |
|
|
96 | 96 | except: |
|
|
97 | 97 | self.dataOut.systemHeaderObj = SystemHeader(nSamples=self.__nSamples, |
|
|
98 | 98 | nProfiles=nProfiles, |
|
|
99 | 99 | nChannels=len( |
|
|
100 | 100 | self.__channelList), |
|
|
101 | 101 | adcResolution=14) |
|
|
102 | 102 | self.dataOut.type = "Voltage" |
|
|
103 | 103 | |
|
|
104 | 104 | self.dataOut.data = None |
|
|
105 | 105 | |
|
|
106 | 106 | self.dataOut.dtype = self.dtype |
|
|
107 | 107 | |
|
|
108 | 108 | # self.dataOut.nChannels = 0 |
|
|
109 | 109 | |
|
|
110 | 110 | # self.dataOut.nHeights = 0 |
|
|
111 | 111 | |
|
|
112 | 112 | self.dataOut.nProfiles = int(nProfiles) |
|
|
113 | 113 | |
|
|
114 | 114 | self.dataOut.heightList = self.__firstHeigth + \ |
|
|
115 | 115 | numpy.arange(self.__nSamples, dtype=numpy.float) * \ |
|
|
116 | 116 | self.__deltaHeigth |
|
|
117 | 117 | |
|
|
118 | 118 | self.dataOut.channelList = list(range(self.__num_subchannels)) |
|
|
119 | 119 | |
|
|
120 | 120 | self.dataOut.blocksize = self.dataOut.getNChannels() * self.dataOut.getNHeights() |
|
|
121 | 121 | |
|
|
122 | 122 | # self.dataOut.channelIndexList = None |
|
|
123 | 123 | |
|
|
124 | 124 | self.dataOut.flagNoData = True |
|
|
125 | 125 | |
|
|
126 | 126 | self.dataOut.flagDataAsBlock = False |
|
|
127 | 127 | # Set to TRUE if the data is discontinuous |
|
|
128 | 128 | self.dataOut.flagDiscontinuousBlock = False |
|
|
129 | 129 | |
|
|
130 | 130 | self.dataOut.utctime = None |
|
|
131 | 131 | |
|
|
132 | 132 | # timezone like jroheader, difference in minutes between UTC and localtime |
|
|
133 | 133 | self.dataOut.timeZone = self.__timezone / 60 |
|
|
134 | 134 | |
|
|
135 | 135 | self.dataOut.dstFlag = 0 |
|
|
136 | 136 | |
|
|
137 | 137 | self.dataOut.errorCount = 0 |
|
|
138 | 138 | |
|
|
139 | 139 | try: |
|
|
140 | 140 | self.dataOut.nCohInt = self.fixed_metadata_dict.get( |
|
|
141 | 141 | 'nCohInt', self.nCohInt) |
|
|
142 | 142 | |
|
|
143 | 143 | # asumo que la data esta decodificada |
|
|
144 | 144 | self.dataOut.flagDecodeData = self.fixed_metadata_dict.get( |
|
|
145 | 145 | 'flagDecodeData', self.flagDecodeData) |
|
|
146 | 146 | |
|
|
147 | 147 | # asumo que la data esta sin flip |
|
|
148 | 148 | self.dataOut.flagDeflipData = self.fixed_metadata_dict['flagDeflipData'] |
|
|
149 | 149 | |
|
|
150 | 150 | self.dataOut.flagShiftFFT = self.fixed_metadata_dict['flagShiftFFT'] |
|
|
151 | 151 | |
|
|
152 | 152 | self.dataOut.useLocalTime = self.fixed_metadata_dict['useLocalTime'] |
|
|
153 | 153 | except: |
|
|
154 | 154 | pass |
|
|
155 | 155 | |
|
|
156 | 156 | self.dataOut.ippSeconds = ippSeconds |
|
|
157 | 157 | |
|
|
158 | 158 | # Time interval between profiles |
|
|
159 | 159 | # self.dataOut.timeInterval = self.dataOut.ippSeconds * self.dataOut.nCohInt |
|
|
160 | 160 | |
|
|
161 | 161 | self.dataOut.frequency = self.__frequency |
|
|
162 | 162 | |
|
|
163 | 163 | self.dataOut.realtime = self.__online |
|
|
164 | 164 | |
|
|
165 | 165 | def findDatafiles(self, path, startDate=None, endDate=None): |
|
|
166 | 166 | |
|
|
167 | 167 | if not os.path.isdir(path): |
|
|
168 | 168 | return [] |
|
|
169 | 169 | |
|
|
170 | 170 | try: |
|
|
171 | 171 | digitalReadObj = digital_rf.DigitalRFReader( |
|
|
172 | 172 | path, load_all_metadata=True) |
|
|
173 | 173 | except: |
|
|
174 | 174 | digitalReadObj = digital_rf.DigitalRFReader(path) |
|
|
175 | 175 | |
|
|
176 | 176 | channelNameList = digitalReadObj.get_channels() |
|
|
177 | 177 | |
|
|
178 | 178 | if not channelNameList: |
|
|
179 | 179 | return [] |
|
|
180 | 180 | |
|
|
181 | 181 | metadata_dict = digitalReadObj.get_rf_file_metadata(channelNameList[0]) |
|
|
182 | 182 | |
|
|
183 | 183 | sample_rate = metadata_dict['sample_rate'][0] |
|
|
184 | 184 | |
|
|
185 | 185 | this_metadata_file = digitalReadObj.get_metadata(channelNameList[0]) |
|
|
186 | 186 | |
|
|
187 | 187 | try: |
|
|
188 | 188 | timezone = this_metadata_file['timezone'].value |
|
|
189 | 189 | except: |
|
|
190 | 190 | timezone = 0 |
|
|
191 | 191 | |
|
|
192 | 192 | startUTCSecond, endUTCSecond = digitalReadObj.get_bounds( |
|
|
193 | 193 | channelNameList[0]) / sample_rate - timezone |
|
|
194 | 194 | |
|
|
195 | 195 | startDatetime = datetime.datetime.utcfromtimestamp(startUTCSecond) |
|
|
196 | 196 | endDatatime = datetime.datetime.utcfromtimestamp(endUTCSecond) |
|
|
197 | 197 | |
|
|
198 | 198 | if not startDate: |
|
|
199 | 199 | startDate = startDatetime.date() |
|
|
200 | 200 | |
|
|
201 | 201 | if not endDate: |
|
|
202 | 202 | endDate = endDatatime.date() |
|
|
203 | 203 | |
|
|
204 | 204 | dateList = [] |
|
|
205 | 205 | |
|
|
206 | 206 | thisDatetime = startDatetime |
|
|
207 | 207 | |
|
|
208 | 208 | while(thisDatetime <= endDatatime): |
|
|
209 | 209 | |
|
|
210 | 210 | thisDate = thisDatetime.date() |
|
|
211 | 211 | |
|
|
212 | 212 | if thisDate < startDate: |
|
|
213 | 213 | continue |
|
|
214 | 214 | |
|
|
215 | 215 | if thisDate > endDate: |
|
|
216 | 216 | break |
|
|
217 | 217 | |
|
|
218 | 218 | dateList.append(thisDate) |
|
|
219 | 219 | thisDatetime += datetime.timedelta(1) |
|
|
220 | 220 | |
|
|
221 | 221 | return dateList |
|
|
222 | 222 | |
|
|
223 | 223 | def setup(self, path=None, |
|
|
224 | 224 | startDate=None, |
|
|
225 | 225 | endDate=None, |
|
|
226 | 226 | startTime=datetime.time(0, 0, 0), |
|
|
227 | 227 | endTime=datetime.time(23, 59, 59), |
|
|
228 | 228 | channelList=None, |
|
|
229 | 229 | nSamples=None, |
|
|
230 | 230 | online=False, |
|
|
231 | 231 | delay=60, |
|
|
232 | 232 | buffer_size=1024, |
|
|
233 | 233 | ippKm=None, |
|
|
234 | 234 | nCohInt=1, |
|
|
235 | 235 | nCode=1, |
|
|
236 | 236 | nBaud=1, |
|
|
237 | 237 | flagDecodeData=False, |
|
|
238 | 238 | code=numpy.ones((1, 1), dtype=numpy.int), |
|
|
239 | 239 | **kwargs): |
|
|
240 | 240 | ''' |
|
|
241 | 241 | In this method we should set all initial parameters. |
|
|
242 | 242 | |
|
|
243 | 243 | Inputs: |
|
|
244 | 244 | path |
|
|
245 | 245 | startDate |
|
|
246 | 246 | endDate |
|
|
247 | 247 | startTime |
|
|
248 | 248 | endTime |
|
|
249 | 249 | set |
|
|
250 | 250 | expLabel |
|
|
251 | 251 | ext |
|
|
252 | 252 | online |
|
|
253 | 253 | delay |
|
|
254 | 254 | ''' |
|
|
255 | 255 | self.nCohInt = nCohInt |
|
|
256 | 256 | self.flagDecodeData = flagDecodeData |
|
|
257 | 257 | self.i = 0 |
|
|
258 | 258 | if not os.path.isdir(path): |
|
|
259 | 259 | raise ValueError("[Reading] Directory %s does not exist" % path) |
|
|
260 | 260 | |
|
|
261 | 261 | try: |
|
|
262 | 262 | self.digitalReadObj = digital_rf.DigitalRFReader( |
|
|
263 | 263 | path, load_all_metadata=True) |
|
|
264 | 264 | except: |
|
|
265 | 265 | self.digitalReadObj = digital_rf.DigitalRFReader(path) |
|
|
266 | 266 | |
|
|
267 | 267 | channelNameList = self.digitalReadObj.get_channels() |
|
|
268 | 268 | |
|
|
269 | 269 | if not channelNameList: |
|
|
270 | 270 | raise ValueError("[Reading] Directory %s does not have any files" % path) |
|
|
271 | 271 | |
|
|
272 | 272 | if not channelList: |
|
|
273 | 273 | channelList = list(range(len(channelNameList))) |
|
|
274 | 274 | |
|
|
275 | 275 | ########## Reading metadata ###################### |
|
|
276 | 276 | |
|
|
277 | 277 | top_properties = self.digitalReadObj.get_properties( |
|
|
278 | 278 | channelNameList[channelList[0]]) |
|
|
279 | 279 | |
|
|
280 | 280 | self.__num_subchannels = top_properties['num_subchannels'] |
|
|
281 | 281 | self.__sample_rate = 1.0 * \ |
|
|
282 | 282 | top_properties['sample_rate_numerator'] / \ |
|
|
283 | 283 | top_properties['sample_rate_denominator'] |
|
|
284 | 284 | # self.__samples_per_file = top_properties['samples_per_file'][0] |
|
|
285 | 285 | self.__deltaHeigth = 1e6 * 0.15 / self.__sample_rate # why 0.15? |
|
|
286 | 286 | |
|
|
287 | 287 | this_metadata_file = self.digitalReadObj.get_digital_metadata( |
|
|
288 | 288 | channelNameList[channelList[0]]) |
|
|
289 | 289 | metadata_bounds = this_metadata_file.get_bounds() |
|
|
290 | 290 | self.fixed_metadata_dict = this_metadata_file.read( |
|
|
291 | 291 | metadata_bounds[0])[metadata_bounds[0]] # GET FIRST HEADER |
|
|
292 | 292 | |
|
|
293 | 293 | try: |
|
|
294 | 294 | self.__processingHeader = self.fixed_metadata_dict['processingHeader'] |
|
|
295 | 295 | self.__radarControllerHeader = self.fixed_metadata_dict['radarControllerHeader'] |
|
|
296 | 296 | self.__systemHeader = self.fixed_metadata_dict['systemHeader'] |
|
|
297 | 297 | self.dtype = pickle.loads(self.fixed_metadata_dict['dtype']) |
|
|
298 | 298 | except: |
|
|
299 | 299 | pass |
|
|
300 | 300 | |
|
|
301 | 301 | self.__frequency = None |
|
|
302 | 302 | |
|
|
303 | 303 | self.__frequency = self.fixed_metadata_dict.get('frequency', 1) |
|
|
304 | 304 | |
|
|
305 | 305 | self.__timezone = self.fixed_metadata_dict.get('timezone', 300) |
|
|
306 | 306 | |
|
|
307 | 307 | try: |
|
|
308 | 308 | nSamples = self.fixed_metadata_dict['nSamples'] |
|
|
309 | 309 | except: |
|
|
310 | 310 | nSamples = None |
|
|
311 | 311 | |
|
|
312 | 312 | self.__firstHeigth = 0 |
|
|
313 | 313 | |
|
|
314 | 314 | try: |
|
|
315 | 315 | codeType = self.__radarControllerHeader['codeType'] |
|
|
316 | 316 | except: |
|
|
317 | 317 | codeType = 0 |
|
|
318 | 318 | |
|
|
319 | 319 | try: |
|
|
320 | 320 | if codeType: |
|
|
321 | 321 | nCode = self.__radarControllerHeader['nCode'] |
|
|
322 | 322 | nBaud = self.__radarControllerHeader['nBaud'] |
|
|
323 | 323 | code = self.__radarControllerHeader['code'] |
|
|
324 | 324 | except: |
|
|
325 | 325 | pass |
|
|
326 | 326 | |
|
|
327 | 327 | if not ippKm: |
|
|
328 | 328 | try: |
|
|
329 | 329 | # seconds to km |
|
|
330 | 330 | ippKm = self.__radarControllerHeader['ipp'] |
|
|
331 | 331 | except: |
|
|
332 | 332 | ippKm = None |
|
|
333 | 333 | #################################################### |
|
|
334 | 334 | self.__ippKm = ippKm |
|
|
335 | 335 | startUTCSecond = None |
|
|
336 | 336 | endUTCSecond = None |
|
|
337 | 337 | |
|
|
338 | 338 | if startDate: |
|
|
339 | 339 | startDatetime = datetime.datetime.combine(startDate, startTime) |
|
|
340 | 340 | startUTCSecond = ( |
|
|
341 | 341 | startDatetime - datetime.datetime(1970, 1, 1)).total_seconds() + self.__timezone |
|
|
342 | 342 | |
|
|
343 | 343 | if endDate: |
|
|
344 | 344 | endDatetime = datetime.datetime.combine(endDate, endTime) |
|
|
345 | 345 | endUTCSecond = (endDatetime - datetime.datetime(1970, |
|
|
346 | 346 | 1, 1)).total_seconds() + self.__timezone |
|
|
347 | 347 | |
|
|
348 | 348 | start_index, end_index = self.digitalReadObj.get_bounds( |
|
|
349 | 349 | channelNameList[channelList[0]]) |
|
|
350 | 350 | |
|
|
351 | 351 | if not startUTCSecond: |
|
|
352 | 352 | startUTCSecond = start_index / self.__sample_rate |
|
|
353 | 353 | |
|
|
354 | 354 | if start_index > startUTCSecond * self.__sample_rate: |
|
|
355 | 355 | startUTCSecond = start_index / self.__sample_rate |
|
|
356 | 356 | |
|
|
357 | 357 | if not endUTCSecond: |
|
|
358 | 358 | endUTCSecond = end_index / self.__sample_rate |
|
|
359 | 359 | |
|
|
360 | 360 | if end_index < endUTCSecond * self.__sample_rate: |
|
|
361 | 361 | endUTCSecond = end_index / self.__sample_rate |
|
|
362 | 362 | if not nSamples: |
|
|
363 | 363 | if not ippKm: |
|
|
364 | 364 | raise ValueError("[Reading] nSamples or ippKm should be defined") |
|
|
365 | 365 | nSamples = int(ippKm / (1e6 * 0.15 / self.__sample_rate)) |
|
|
366 | 366 | channelBoundList = [] |
|
|
367 | 367 | channelNameListFiltered = [] |
|
|
368 | 368 | |
|
|
369 | 369 | for thisIndexChannel in channelList: |
|
|
370 | 370 | thisChannelName = channelNameList[thisIndexChannel] |
|
|
371 | 371 | start_index, end_index = self.digitalReadObj.get_bounds( |
|
|
372 | 372 | thisChannelName) |
|
|
373 | 373 | channelBoundList.append((start_index, end_index)) |
|
|
374 | 374 | channelNameListFiltered.append(thisChannelName) |
|
|
375 | 375 | |
|
|
376 | 376 | self.profileIndex = 0 |
|
|
377 | 377 | self.i = 0 |
|
|
378 | 378 | self.__delay = delay |
|
|
379 | 379 | |
|
|
380 | 380 | self.__codeType = codeType |
|
|
381 | 381 | self.__nCode = nCode |
|
|
382 | 382 | self.__nBaud = nBaud |
|
|
383 | 383 | self.__code = code |
|
|
384 | 384 | |
|
|
385 | 385 | self.__datapath = path |
|
|
386 | 386 | self.__online = online |
|
|
387 | 387 | self.__channelList = channelList |
|
|
388 | 388 | self.__channelNameList = channelNameListFiltered |
|
|
389 | 389 | self.__channelBoundList = channelBoundList |
|
|
390 | 390 | self.__nSamples = nSamples |
|
|
391 | 391 | self.__samples_to_read = int(nSamples) # FIJO: AHORA 40 |
|
|
392 | 392 | self.__nChannels = len(self.__channelList) |
|
|
393 | 393 | |
|
|
394 | 394 | self.__startUTCSecond = startUTCSecond |
|
|
395 | 395 | self.__endUTCSecond = endUTCSecond |
|
|
396 | 396 | |
|
|
397 | 397 | self.__timeInterval = 1.0 * self.__samples_to_read / \ |
|
|
398 | 398 | self.__sample_rate # Time interval |
|
|
399 | 399 | |
|
|
400 | 400 | if online: |
|
|
401 | 401 | # self.__thisUnixSample = int(endUTCSecond*self.__sample_rate - 4*self.__samples_to_read) |
|
|
402 | 402 | startUTCSecond = numpy.floor(endUTCSecond) |
|
|
403 | 403 | |
|
|
404 | 404 | # por que en el otro metodo lo primero q se hace es sumar samplestoread |
|
|
405 | 405 | self.__thisUnixSample = int( |
|
|
406 | 406 | startUTCSecond * self.__sample_rate) - self.__samples_to_read |
|
|
407 | 407 | |
|
|
408 | 408 | self.__data_buffer = numpy.zeros( |
|
|
409 | 409 | (self.__num_subchannels, self.__samples_to_read), dtype=numpy.complex) |
|
|
410 | 410 | |
|
|
411 | 411 | self.__setFileHeader() |
|
|
412 | 412 | self.isConfig = True |
|
|
413 | 413 | |
|
|
414 | 414 | print("[Reading] Digital RF Data was found from %s to %s " % ( |
|
|
415 | 415 | datetime.datetime.utcfromtimestamp( |
|
|
416 | 416 | self.__startUTCSecond - self.__timezone), |
|
|
417 | 417 | datetime.datetime.utcfromtimestamp( |
|
|
418 | 418 | self.__endUTCSecond - self.__timezone) |
|
|
419 | 419 | )) |
|
|
420 | 420 | |
|
|
421 | 421 | print("[Reading] Starting process from %s to %s" % (datetime.datetime.utcfromtimestamp(startUTCSecond - self.__timezone), |
|
|
422 | 422 | datetime.datetime.utcfromtimestamp( |
|
|
423 | 423 | endUTCSecond - self.__timezone) |
|
|
424 | 424 | )) |
|
|
425 | 425 | self.oldAverage = None |
|
|
426 | 426 | self.count = 0 |
|
|
427 | 427 | self.executionTime = 0 |
|
|
428 | 428 | |
|
|
429 | 429 | def __reload(self): |
|
|
430 | 430 | |
|
|
431 | 431 | # print "%s not in range [%s, %s]" %( |
|
|
432 | 432 | # datetime.datetime.utcfromtimestamp(self.thisSecond - self.__timezone), |
|
|
433 | 433 | # datetime.datetime.utcfromtimestamp(self.__startUTCSecond - self.__timezone), |
|
|
434 | 434 | # datetime.datetime.utcfromtimestamp(self.__endUTCSecond - self.__timezone) |
|
|
435 | 435 | # ) |
|
|
436 | 436 | print("[Reading] reloading metadata ...") |
|
|
437 | 437 | |
|
|
438 | 438 | try: |
|
|
439 | 439 | self.digitalReadObj.reload(complete_update=True) |
|
|
440 | 440 | except: |
|
|
441 | 441 | self.digitalReadObj.reload() |
|
|
442 | 442 | |
|
|
443 | 443 | start_index, end_index = self.digitalReadObj.get_bounds( |
|
|
444 | 444 | self.__channelNameList[self.__channelList[0]]) |
|
|
445 | 445 | |
|
|
446 | 446 | if start_index > self.__startUTCSecond * self.__sample_rate: |
|
|
447 | 447 | self.__startUTCSecond = 1.0 * start_index / self.__sample_rate |
|
|
448 | 448 | |
|
|
449 | 449 | if end_index > self.__endUTCSecond * self.__sample_rate: |
|
|
450 | 450 | self.__endUTCSecond = 1.0 * end_index / self.__sample_rate |
|
|
451 | 451 | print() |
|
|
452 | 452 | print("[Reading] New timerange found [%s, %s] " % ( |
|
|
453 | 453 | datetime.datetime.utcfromtimestamp( |
|
|
454 | 454 | self.__startUTCSecond - self.__timezone), |
|
|
455 | 455 | datetime.datetime.utcfromtimestamp( |
|
|
456 | 456 | self.__endUTCSecond - self.__timezone) |
|
|
457 | 457 | )) |
|
|
458 | 458 | |
|
|
459 | 459 | return True |
|
|
460 | 460 | |
|
|
461 | 461 | return False |
|
|
462 | 462 | |
|
|
463 | 463 | def timeit(self, toExecute): |
|
|
464 | 464 | t0 = time() |
|
|
465 | 465 | toExecute() |
|
|
466 | 466 | self.executionTime = time() - t0 |
|
|
467 | 467 | if self.oldAverage is None: |
|
|
468 | 468 | self.oldAverage = self.executionTime |
|
|
469 | 469 | self.oldAverage = (self.executionTime + self.count * |
|
|
470 | 470 | self.oldAverage) / (self.count + 1.0) |
|
|
471 | 471 | self.count = self.count + 1.0 |
|
|
472 | 472 | return |
|
|
473 | 473 | |
|
|
474 | 474 | def __readNextBlock(self, seconds=30, volt_scale=1): |
|
|
475 | 475 | ''' |
|
|
476 | 476 | ''' |
|
|
477 | 477 | |
|
|
478 | 478 | # Set the next data |
|
|
479 | 479 | self.__flagDiscontinuousBlock = False |
|
|
480 | 480 | self.__thisUnixSample += self.__samples_to_read |
|
|
481 | 481 | |
|
|
482 | 482 | if self.__thisUnixSample + 2 * self.__samples_to_read > self.__endUTCSecond * self.__sample_rate: |
|
|
483 | 483 | print("[Reading] There are no more data into selected time-range") |
|
|
484 | 484 | if self.__online: |
|
|
485 | 485 | self.__reload() |
|
|
486 | 486 | else: |
|
|
487 | 487 | return False |
|
|
488 | 488 | |
|
|
489 | 489 | if self.__thisUnixSample + 2 * self.__samples_to_read > self.__endUTCSecond * self.__sample_rate: |
|
|
490 | 490 | return False |
|
|
491 | 491 | self.__thisUnixSample -= self.__samples_to_read |
|
|
492 | 492 | |
|
|
493 | 493 | indexChannel = 0 |
|
|
494 | 494 | |
|
|
495 | 495 | dataOk = False |
|
|
496 | 496 | for thisChannelName in self.__channelNameList: # TODO VARIOS CHANNELS? |
|
|
497 | 497 | for indexSubchannel in range(self.__num_subchannels): |
|
|
498 | 498 | try: |
|
|
499 | 499 | t0 = time() |
|
|
500 | 500 | result = self.digitalReadObj.read_vector_c81d(self.__thisUnixSample, |
|
|
501 | 501 | self.__samples_to_read, |
|
|
502 | 502 | thisChannelName, sub_channel=indexSubchannel) |
|
|
503 | 503 | self.executionTime = time() - t0 |
|
|
504 | 504 | if self.oldAverage is None: |
|
|
505 | 505 | self.oldAverage = self.executionTime |
|
|
506 | 506 | self.oldAverage = ( |
|
|
507 | 507 | self.executionTime + self.count * self.oldAverage) / (self.count + 1.0) |
|
|
508 | 508 | self.count = self.count + 1.0 |
|
|
509 | 509 | |
|
|
510 | 510 | except IOError as e: |
|
|
511 | 511 | # read next profile |
|
|
512 | 512 | self.__flagDiscontinuousBlock = True |
|
|
513 | 513 | print("[Reading] %s" % datetime.datetime.utcfromtimestamp(self.thisSecond - self.__timezone), e) |
|
|
514 | 514 | break |
|
|
515 | 515 | |
|
|
516 | 516 | if result.shape[0] != self.__samples_to_read: |
|
|
517 | 517 | self.__flagDiscontinuousBlock = True |
|
|
518 | 518 | print("[Reading] %s: Too few samples were found, just %d/%d samples" % (datetime.datetime.utcfromtimestamp(self.thisSecond - self.__timezone), |
|
|
519 | 519 | result.shape[0], |
|
|
520 | 520 | self.__samples_to_read)) |
|
|
521 | 521 | break |
|
|
522 | 522 | |
|
|
523 | 523 | self.__data_buffer[indexSubchannel, :] = result * volt_scale |
|
|
524 | 524 | |
|
|
525 | 525 | indexChannel += 1 |
|
|
526 | 526 | |
|
|
527 | 527 | dataOk = True |
|
|
528 | 528 | |
|
|
529 | 529 | self.__utctime = self.__thisUnixSample / self.__sample_rate |
|
|
530 | 530 | |
|
|
531 | 531 | if not dataOk: |
|
|
532 | 532 | return False |
|
|
533 | 533 | |
|
|
534 | 534 | print("[Reading] %s: %d samples <> %f sec" % (datetime.datetime.utcfromtimestamp(self.thisSecond - self.__timezone), |
|
|
535 | 535 | self.__samples_to_read, |
|
|
536 | 536 | self.__timeInterval)) |
|
|
537 | 537 | |
|
|
538 | 538 | self.__bufferIndex = 0 |
|
|
539 | 539 | |
|
|
540 | 540 | return True |
|
|
541 | 541 | |
|
|
542 | 542 | def __isBufferEmpty(self): |
|
|
543 | 543 | return self.__bufferIndex > self.__samples_to_read - self.__nSamples # 40960 - 40 |
|
|
544 | 544 | |
|
|
545 | 545 | def getData(self, seconds=30, nTries=5): |
|
|
546 | 546 | ''' |
|
|
547 | 547 | This method gets the data from files and put the data into the dataOut object |
|
|
548 | 548 | |
|
|
549 | 549 | In addition, increase el the buffer counter in one. |
|
|
550 | 550 | |
|
|
551 | 551 | Return: |
|
|
552 | 552 | data : retorna un perfil de voltages (alturas * canales) copiados desde el |
|
|
553 | 553 | buffer. Si no hay mas archivos a leer retorna None. |
|
|
554 | 554 | |
|
|
555 | 555 | Affected: |
|
|
556 | 556 | self.dataOut |
|
|
557 | 557 | self.profileIndex |
|
|
558 | 558 | self.flagDiscontinuousBlock |
|
|
559 | 559 | self.flagIsNewBlock |
|
|
560 | 560 | ''' |
|
|
561 | 561 | |
|
|
562 | 562 | err_counter = 0 |
|
|
563 | 563 | self.dataOut.flagNoData = True |
|
|
564 | 564 | |
|
|
565 | 565 | if self.__isBufferEmpty(): |
|
|
566 | 566 | self.__flagDiscontinuousBlock = False |
|
|
567 | 567 | |
|
|
568 | 568 | while True: |
|
|
569 | 569 | if self.__readNextBlock(): |
|
|
570 | 570 | break |
|
|
571 | 571 | if self.__thisUnixSample > self.__endUTCSecond * self.__sample_rate: |
|
|
572 |
self.dataOut.error = |
|
|
|
572 | self.dataOut.error = 'Error' | |
|
|
573 | 573 | return |
|
|
574 | 574 | |
|
|
575 | 575 | if self.__flagDiscontinuousBlock: |
|
|
576 | print('[Reading] discontinuous block found ... continue with the next block') | |
|
|
577 | self.dataOut.error = (1, '') | |
|
|
576 | self.dataOut.error = 'discontinuous block found' | |
|
|
578 | 577 | return |
|
|
579 | 578 | |
|
|
580 | 579 | if not self.__online: |
|
|
581 |
self.dataOut.error = |
|
|
|
580 | self.dataOut.error = 'Online?' | |
|
|
582 | 581 | return |
|
|
583 | 582 | |
|
|
584 | 583 | err_counter += 1 |
|
|
585 | 584 | if err_counter > nTries: |
|
|
586 |
self.dataOut.error = |
|
|
|
585 | self.dataOut.error = 'Max retrys reach' | |
|
|
587 | 586 | return |
|
|
588 | 587 | |
|
|
589 | 588 | print('[Reading] waiting %d seconds to read a new block' % seconds) |
|
|
590 | 589 | sleep(seconds) |
|
|
591 | 590 | |
|
|
592 | 591 | self.dataOut.data = self.__data_buffer[:, |
|
|
593 | 592 | self.__bufferIndex:self.__bufferIndex + self.__nSamples] |
|
|
594 | 593 | self.dataOut.utctime = ( |
|
|
595 | 594 | self.__thisUnixSample + self.__bufferIndex) / self.__sample_rate |
|
|
596 | 595 | self.dataOut.flagNoData = False |
|
|
597 | 596 | self.dataOut.flagDiscontinuousBlock = self.__flagDiscontinuousBlock |
|
|
598 | 597 | self.dataOut.profileIndex = self.profileIndex |
|
|
599 | 598 | |
|
|
600 | 599 | self.__bufferIndex += self.__nSamples |
|
|
601 | 600 | self.profileIndex += 1 |
|
|
602 | 601 | |
|
|
603 | 602 | if self.profileIndex == self.dataOut.nProfiles: |
|
|
604 | 603 | self.profileIndex = 0 |
|
|
605 | 604 | |
|
|
606 | 605 | return |
|
|
607 | 606 | |
|
|
608 | 607 | def printInfo(self): |
|
|
609 | 608 | ''' |
|
|
610 | 609 | ''' |
|
|
611 | 610 | if self.__printInfo == False: |
|
|
612 | 611 | return |
|
|
613 | 612 | |
|
|
614 | 613 | # self.systemHeaderObj.printInfo() |
|
|
615 | 614 | # self.radarControllerHeaderObj.printInfo() |
|
|
616 | 615 | |
|
|
617 | 616 | self.__printInfo = False |
|
|
618 | 617 | |
|
|
619 | 618 | def printNumberOfBlock(self): |
|
|
620 | 619 | ''' |
|
|
621 | 620 | ''' |
|
|
622 | 621 | return |
|
|
623 | 622 | # print self.profileIndex |
|
|
624 | 623 | |
|
|
625 | 624 | def run(self, **kwargs): |
|
|
626 | 625 | ''' |
|
|
627 | 626 | This method will be called many times so here you should put all your code |
|
|
628 | 627 | ''' |
|
|
629 | 628 | |
|
|
630 | 629 | if not self.isConfig: |
|
|
631 | 630 | self.setup(**kwargs) |
|
|
632 | 631 | #self.i = self.i+1 |
|
|
633 | 632 | self.getData(seconds=self.__delay) |
|
|
634 | 633 | |
|
|
635 | 634 | return |
|
|
636 | 635 | |
|
|
637 | 636 | |
|
|
638 | 637 | class DigitalRFWriter(Operation): |
|
|
639 | 638 | ''' |
|
|
640 | 639 | classdocs |
|
|
641 | 640 | ''' |
|
|
642 | 641 | |
|
|
643 | 642 | def __init__(self, **kwargs): |
|
|
644 | 643 | ''' |
|
|
645 | 644 | Constructor |
|
|
646 | 645 | ''' |
|
|
647 | 646 | Operation.__init__(self, **kwargs) |
|
|
648 | 647 | self.metadata_dict = {} |
|
|
649 | 648 | self.dataOut = None |
|
|
650 | 649 | self.dtype = None |
|
|
651 | 650 | self.oldAverage = 0 |
|
|
652 | 651 | |
|
|
653 | 652 | def setHeader(self): |
|
|
654 | 653 | |
|
|
655 | 654 | self.metadata_dict['frequency'] = self.dataOut.frequency |
|
|
656 | 655 | self.metadata_dict['timezone'] = self.dataOut.timeZone |
|
|
657 | 656 | self.metadata_dict['dtype'] = pickle.dumps(self.dataOut.dtype) |
|
|
658 | 657 | self.metadata_dict['nProfiles'] = self.dataOut.nProfiles |
|
|
659 | 658 | self.metadata_dict['heightList'] = self.dataOut.heightList |
|
|
660 | 659 | self.metadata_dict['channelList'] = self.dataOut.channelList |
|
|
661 | 660 | self.metadata_dict['flagDecodeData'] = self.dataOut.flagDecodeData |
|
|
662 | 661 | self.metadata_dict['flagDeflipData'] = self.dataOut.flagDeflipData |
|
|
663 | 662 | self.metadata_dict['flagShiftFFT'] = self.dataOut.flagShiftFFT |
|
|
664 | 663 | self.metadata_dict['useLocalTime'] = self.dataOut.useLocalTime |
|
|
665 | 664 | self.metadata_dict['nCohInt'] = self.dataOut.nCohInt |
|
|
666 | 665 | self.metadata_dict['type'] = self.dataOut.type |
|
|
667 | 666 | self.metadata_dict['flagDataAsBlock'] = getattr( |
|
|
668 | 667 | self.dataOut, 'flagDataAsBlock', None) # chequear |
|
|
669 | 668 | |
|
|
670 | 669 | def setup(self, dataOut, path, frequency, fileCadence, dirCadence, metadataCadence, set=0, metadataFile='metadata', ext='.h5'): |
|
|
671 | 670 | ''' |
|
|
672 | 671 | In this method we should set all initial parameters. |
|
|
673 | 672 | Input: |
|
|
674 | 673 | dataOut: Input data will also be outputa data |
|
|
675 | 674 | ''' |
|
|
676 | 675 | self.setHeader() |
|
|
677 | 676 | self.__ippSeconds = dataOut.ippSeconds |
|
|
678 | 677 | self.__deltaH = dataOut.getDeltaH() |
|
|
679 | 678 | self.__sample_rate = 1e6 * 0.15 / self.__deltaH |
|
|
680 | 679 | self.__dtype = dataOut.dtype |
|
|
681 | 680 | if len(dataOut.dtype) == 2: |
|
|
682 | 681 | self.__dtype = dataOut.dtype[0] |
|
|
683 | 682 | self.__nSamples = dataOut.systemHeaderObj.nSamples |
|
|
684 | 683 | self.__nProfiles = dataOut.nProfiles |
|
|
685 | 684 | |
|
|
686 | 685 | if self.dataOut.type != 'Voltage': |
|
|
687 | 686 | raise 'Digital RF cannot be used with this data type' |
|
|
688 | 687 | self.arr_data = numpy.ones((1, dataOut.nFFTPoints * len( |
|
|
689 | 688 | self.dataOut.channelList)), dtype=[('r', self.__dtype), ('i', self.__dtype)]) |
|
|
690 | 689 | else: |
|
|
691 | 690 | self.arr_data = numpy.ones((self.__nSamples, len( |
|
|
692 | 691 | self.dataOut.channelList)), dtype=[('r', self.__dtype), ('i', self.__dtype)]) |
|
|
693 | 692 | |
|
|
694 | 693 | file_cadence_millisecs = 1000 |
|
|
695 | 694 | |
|
|
696 | 695 | sample_rate_fraction = Fraction(self.__sample_rate).limit_denominator() |
|
|
697 | 696 | sample_rate_numerator = int(sample_rate_fraction.numerator) |
|
|
698 | 697 | sample_rate_denominator = int(sample_rate_fraction.denominator) |
|
|
699 | 698 | start_global_index = dataOut.utctime * self.__sample_rate |
|
|
700 | 699 | |
|
|
701 | 700 | uuid = 'prueba' |
|
|
702 | 701 | compression_level = 0 |
|
|
703 | 702 | checksum = False |
|
|
704 | 703 | is_complex = True |
|
|
705 | 704 | num_subchannels = len(dataOut.channelList) |
|
|
706 | 705 | is_continuous = True |
|
|
707 | 706 | marching_periods = False |
|
|
708 | 707 | |
|
|
709 | 708 | self.digitalWriteObj = digital_rf.DigitalRFWriter(path, self.__dtype, dirCadence, |
|
|
710 | 709 | fileCadence, start_global_index, |
|
|
711 | 710 | sample_rate_numerator, sample_rate_denominator, uuid, compression_level, checksum, |
|
|
712 | 711 | is_complex, num_subchannels, is_continuous, marching_periods) |
|
|
713 | 712 | metadata_dir = os.path.join(path, 'metadata') |
|
|
714 | 713 | os.system('mkdir %s' % (metadata_dir)) |
|
|
715 | 714 | self.digitalMetadataWriteObj = digital_rf.DigitalMetadataWriter(metadata_dir, dirCadence, 1, # 236, file_cadence_millisecs / 1000 |
|
|
716 | 715 | sample_rate_numerator, sample_rate_denominator, |
|
|
717 | 716 | metadataFile) |
|
|
718 | 717 | self.isConfig = True |
|
|
719 | 718 | self.currentSample = 0 |
|
|
720 | 719 | self.oldAverage = 0 |
|
|
721 | 720 | self.count = 0 |
|
|
722 | 721 | return |
|
|
723 | 722 | |
|
|
724 | 723 | def writeMetadata(self): |
|
|
725 | 724 | start_idx = self.__sample_rate * self.dataOut.utctime |
|
|
726 | 725 | |
|
|
727 | 726 | self.metadata_dict['processingHeader'] = self.dataOut.processingHeaderObj.getAsDict( |
|
|
728 | 727 | ) |
|
|
729 | 728 | self.metadata_dict['radarControllerHeader'] = self.dataOut.radarControllerHeaderObj.getAsDict( |
|
|
730 | 729 | ) |
|
|
731 | 730 | self.metadata_dict['systemHeader'] = self.dataOut.systemHeaderObj.getAsDict( |
|
|
732 | 731 | ) |
|
|
733 | 732 | self.digitalMetadataWriteObj.write(start_idx, self.metadata_dict) |
|
|
734 | 733 | return |
|
|
735 | 734 | |
|
|
736 | 735 | def timeit(self, toExecute): |
|
|
737 | 736 | t0 = time() |
|
|
738 | 737 | toExecute() |
|
|
739 | 738 | self.executionTime = time() - t0 |
|
|
740 | 739 | if self.oldAverage is None: |
|
|
741 | 740 | self.oldAverage = self.executionTime |
|
|
742 | 741 | self.oldAverage = (self.executionTime + self.count * |
|
|
743 | 742 | self.oldAverage) / (self.count + 1.0) |
|
|
744 | 743 | self.count = self.count + 1.0 |
|
|
745 | 744 | return |
|
|
746 | 745 | |
|
|
747 | 746 | def writeData(self): |
|
|
748 | 747 | if self.dataOut.type != 'Voltage': |
|
|
749 | 748 | raise 'Digital RF cannot be used with this data type' |
|
|
750 | 749 | for channel in self.dataOut.channelList: |
|
|
751 | 750 | for i in range(self.dataOut.nFFTPoints): |
|
|
752 | 751 | self.arr_data[1][channel * self.dataOut.nFFTPoints + |
|
|
753 | 752 | i]['r'] = self.dataOut.data[channel][i].real |
|
|
754 | 753 | self.arr_data[1][channel * self.dataOut.nFFTPoints + |
|
|
755 | 754 | i]['i'] = self.dataOut.data[channel][i].imag |
|
|
756 | 755 | else: |
|
|
757 | 756 | for i in range(self.dataOut.systemHeaderObj.nSamples): |
|
|
758 | 757 | for channel in self.dataOut.channelList: |
|
|
759 | 758 | self.arr_data[i][channel]['r'] = self.dataOut.data[channel][i].real |
|
|
760 | 759 | self.arr_data[i][channel]['i'] = self.dataOut.data[channel][i].imag |
|
|
761 | 760 | |
|
|
762 | 761 | def f(): return self.digitalWriteObj.rf_write(self.arr_data) |
|
|
763 | 762 | self.timeit(f) |
|
|
764 | 763 | |
|
|
765 | 764 | return |
|
|
766 | 765 | |
|
|
767 | 766 | def run(self, dataOut, frequency=49.92e6, path=None, fileCadence=1000, dirCadence=36000, metadataCadence=1, **kwargs): |
|
|
768 | 767 | ''' |
|
|
769 | 768 | This method will be called many times so here you should put all your code |
|
|
770 | 769 | Inputs: |
|
|
771 | 770 | dataOut: object with the data |
|
|
772 | 771 | ''' |
|
|
773 | 772 | # print dataOut.__dict__ |
|
|
774 | 773 | self.dataOut = dataOut |
|
|
775 | 774 | if not self.isConfig: |
|
|
776 | 775 | self.setup(dataOut, path, frequency, fileCadence, |
|
|
777 | 776 | dirCadence, metadataCadence, **kwargs) |
|
|
778 | 777 | self.writeMetadata() |
|
|
779 | 778 | |
|
|
780 | 779 | self.writeData() |
|
|
781 | 780 | |
|
|
782 | 781 | ## self.currentSample += 1 |
|
|
783 | 782 | # if self.dataOut.flagDataAsBlock or self.currentSample == 1: |
|
|
784 | 783 | # self.writeMetadata() |
|
|
785 | 784 | ## if self.currentSample == self.__nProfiles: self.currentSample = 0 |
|
|
786 | 785 | |
|
|
787 | 786 | return dataOut |
|
|
788 | 787 | |
|
|
789 | 788 | def close(self): |
|
|
790 | 789 | print('[Writing] - Closing files ') |
|
|
791 | 790 | print('Average of writing to digital rf format is ', self.oldAverage * 1000) |
|
|
792 | 791 | try: |
|
|
793 | 792 | self.digitalWriteObj.close() |
|
|
794 | 793 | except: |
|
|
795 | 794 | pass |
|
|
796 | 795 | |
|
|
797 | 796 | |
| @@ -1,642 +1,642 | |||
|
|
1 | 1 | ''' |
|
|
2 | 2 | Created on Aug 1, 2017 |
|
|
3 | 3 | |
|
|
4 | 4 | @author: Juan C. Espinoza |
|
|
5 | 5 | ''' |
|
|
6 | 6 | |
|
|
7 | 7 | import os |
|
|
8 | 8 | import sys |
|
|
9 | 9 | import time |
|
|
10 | 10 | import json |
|
|
11 | 11 | import glob |
|
|
12 | 12 | import datetime |
|
|
13 | 13 | |
|
|
14 | 14 | import numpy |
|
|
15 | 15 | import h5py |
|
|
16 | 16 | |
|
|
17 | 17 | from schainpy.model.io.jroIO_base import JRODataReader |
|
|
18 | 18 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator |
|
|
19 | 19 | from schainpy.model.data.jrodata import Parameters |
|
|
20 | 20 | from schainpy.utils import log |
|
|
21 | 21 | |
|
|
22 | 22 | try: |
|
|
23 | 23 | import madrigal.cedar |
|
|
24 | 24 | except: |
|
|
25 | 25 | log.warning( |
|
|
26 | 26 | 'You should install "madrigal library" module if you want to read/write Madrigal data' |
|
|
27 | 27 | ) |
|
|
28 | 28 | |
|
|
29 | 29 | DEF_CATALOG = { |
|
|
30 | 30 | 'principleInvestigator': 'Marco Milla', |
|
|
31 | 31 | 'expPurpose': None, |
|
|
32 | 32 | 'cycleTime': None, |
|
|
33 | 33 | 'correlativeExp': None, |
|
|
34 | 34 | 'sciRemarks': None, |
|
|
35 | 35 | 'instRemarks': None |
|
|
36 | 36 | } |
|
|
37 | 37 | DEF_HEADER = { |
|
|
38 | 38 | 'kindatDesc': None, |
|
|
39 | 39 | 'analyst': 'Jicamarca User', |
|
|
40 | 40 | 'comments': None, |
|
|
41 | 41 | 'history': None |
|
|
42 | 42 | } |
|
|
43 | 43 | MNEMONICS = { |
|
|
44 | 44 | 10: 'jro', |
|
|
45 | 45 | 11: 'jbr', |
|
|
46 | 46 | 840: 'jul', |
|
|
47 | 47 | 13: 'jas', |
|
|
48 | 48 | 1000: 'pbr', |
|
|
49 | 49 | 1001: 'hbr', |
|
|
50 | 50 | 1002: 'obr', |
|
|
51 | 51 | } |
|
|
52 | 52 | |
|
|
53 | 53 | UT1970 = datetime.datetime(1970, 1, 1) - datetime.timedelta(seconds=time.timezone) |
|
|
54 | 54 | |
|
|
55 | 55 | def load_json(obj): |
|
|
56 | 56 | ''' |
|
|
57 | 57 | Parse json as string instead of unicode |
|
|
58 | 58 | ''' |
|
|
59 | 59 | |
|
|
60 | 60 | if isinstance(obj, str): |
|
|
61 | 61 | iterable = json.loads(obj) |
|
|
62 | 62 | else: |
|
|
63 | 63 | iterable = obj |
|
|
64 | 64 | |
|
|
65 | 65 | if isinstance(iterable, dict): |
|
|
66 | 66 | return {str(k): load_json(v) if isinstance(v, dict) else str(v) if isinstance(v, str) else v |
|
|
67 | 67 | for k, v in list(iterable.items())} |
|
|
68 | 68 | elif isinstance(iterable, (list, tuple)): |
|
|
69 | 69 | return [str(v) if isinstance(v, str) else v for v in iterable] |
|
|
70 | 70 | |
|
|
71 | 71 | return iterable |
|
|
72 | 72 | |
|
|
73 | 73 | @MPDecorator |
|
|
74 | 74 | class MADReader(JRODataReader, ProcessingUnit): |
|
|
75 | 75 | |
|
|
76 | 76 | def __init__(self): |
|
|
77 | 77 | |
|
|
78 | 78 | ProcessingUnit.__init__(self) |
|
|
79 | 79 | |
|
|
80 | 80 | self.dataOut = Parameters() |
|
|
81 | 81 | self.counter_records = 0 |
|
|
82 | 82 | self.nrecords = None |
|
|
83 | 83 | self.flagNoMoreFiles = 0 |
|
|
84 | 84 | self.isConfig = False |
|
|
85 | 85 | self.filename = None |
|
|
86 | 86 | self.intervals = set() |
|
|
87 | 87 | |
|
|
88 | 88 | def setup(self, |
|
|
89 | 89 | path=None, |
|
|
90 | 90 | startDate=None, |
|
|
91 | 91 | endDate=None, |
|
|
92 | 92 | format=None, |
|
|
93 | 93 | startTime=datetime.time(0, 0, 0), |
|
|
94 | 94 | endTime=datetime.time(23, 59, 59), |
|
|
95 | 95 | **kwargs): |
|
|
96 | 96 | |
|
|
97 | 97 | self.path = path |
|
|
98 | 98 | self.startDate = startDate |
|
|
99 | 99 | self.endDate = endDate |
|
|
100 | 100 | self.startTime = startTime |
|
|
101 | 101 | self.endTime = endTime |
|
|
102 | 102 | self.datatime = datetime.datetime(1900,1,1) |
|
|
103 | 103 | self.oneDDict = load_json(kwargs.get('oneDDict', |
|
|
104 | 104 | "{\"GDLATR\":\"lat\", \"GDLONR\":\"lon\"}")) |
|
|
105 | 105 | self.twoDDict = load_json(kwargs.get('twoDDict', |
|
|
106 | 106 | "{\"GDALT\": \"heightList\"}")) |
|
|
107 | 107 | self.ind2DList = load_json(kwargs.get('ind2DList', |
|
|
108 | 108 | "[\"GDALT\"]")) |
|
|
109 | 109 | if self.path is None: |
|
|
110 | 110 | raise ValueError('The path is not valid') |
|
|
111 | 111 | |
|
|
112 | 112 | if format is None: |
|
|
113 | 113 | raise ValueError('The format is not valid choose simple or hdf5') |
|
|
114 | 114 | elif format.lower() in ('simple', 'txt'): |
|
|
115 | 115 | self.ext = '.txt' |
|
|
116 | 116 | elif format.lower() in ('cedar',): |
|
|
117 | 117 | self.ext = '.001' |
|
|
118 | 118 | else: |
|
|
119 | 119 | self.ext = '.hdf5' |
|
|
120 | 120 | |
|
|
121 | 121 | self.search_files(self.path) |
|
|
122 | 122 | self.fileId = 0 |
|
|
123 | 123 | |
|
|
124 | 124 | if not self.fileList: |
|
|
125 | 125 | raise Warning('There is no files matching these date in the folder: {}. \n Check startDate and endDate'.format(path)) |
|
|
126 | 126 | |
|
|
127 | 127 | self.setNextFile() |
|
|
128 | 128 | |
|
|
129 | 129 | def search_files(self, path): |
|
|
130 | 130 | ''' |
|
|
131 | 131 | Searching for madrigal files in path |
|
|
132 | 132 | Creating a list of files to procces included in [startDate,endDate] |
|
|
133 | 133 | |
|
|
134 | 134 | Input: |
|
|
135 | 135 | path - Path to find files |
|
|
136 | 136 | ''' |
|
|
137 | 137 | |
|
|
138 | 138 | log.log('Searching files {} in {} '.format(self.ext, path), 'MADReader') |
|
|
139 | 139 | foldercounter = 0 |
|
|
140 | 140 | fileList0 = glob.glob1(path, '*{}'.format(self.ext)) |
|
|
141 | 141 | fileList0.sort() |
|
|
142 | 142 | |
|
|
143 | 143 | self.fileList = [] |
|
|
144 | 144 | self.dateFileList = [] |
|
|
145 | 145 | |
|
|
146 | 146 | startDate = self.startDate - datetime.timedelta(1) |
|
|
147 | 147 | endDate = self.endDate + datetime.timedelta(1) |
|
|
148 | 148 | |
|
|
149 | 149 | for thisFile in fileList0: |
|
|
150 | 150 | year = thisFile[3:7] |
|
|
151 | 151 | if not year.isdigit(): |
|
|
152 | 152 | continue |
|
|
153 | 153 | |
|
|
154 | 154 | month = thisFile[7:9] |
|
|
155 | 155 | if not month.isdigit(): |
|
|
156 | 156 | continue |
|
|
157 | 157 | |
|
|
158 | 158 | day = thisFile[9:11] |
|
|
159 | 159 | if not day.isdigit(): |
|
|
160 | 160 | continue |
|
|
161 | 161 | |
|
|
162 | 162 | year, month, day = int(year), int(month), int(day) |
|
|
163 | 163 | dateFile = datetime.date(year, month, day) |
|
|
164 | 164 | |
|
|
165 | 165 | if (startDate > dateFile) or (endDate < dateFile): |
|
|
166 | 166 | continue |
|
|
167 | 167 | |
|
|
168 | 168 | self.fileList.append(thisFile) |
|
|
169 | 169 | self.dateFileList.append(dateFile) |
|
|
170 | 170 | |
|
|
171 | 171 | return |
|
|
172 | 172 | |
|
|
173 | 173 | def parseHeader(self): |
|
|
174 | 174 | ''' |
|
|
175 | 175 | ''' |
|
|
176 | 176 | |
|
|
177 | 177 | self.output = {} |
|
|
178 | 178 | self.version = '2' |
|
|
179 | 179 | s_parameters = None |
|
|
180 | 180 | if self.ext == '.txt': |
|
|
181 | 181 | self.parameters = [s.strip().lower() for s in self.fp.readline().strip().split(' ') if s] |
|
|
182 | 182 | elif self.ext == '.hdf5': |
|
|
183 | 183 | metadata = self.fp['Metadata'] |
|
|
184 | 184 | data = self.fp['Data']['Array Layout'] |
|
|
185 | 185 | if 'Independent Spatial Parameters' in metadata: |
|
|
186 | 186 | s_parameters = [s[0].lower() for s in metadata['Independent Spatial Parameters']] |
|
|
187 | 187 | self.version = '3' |
|
|
188 | 188 | one = [s[0].lower() for s in data['1D Parameters']['Data Parameters']] |
|
|
189 | 189 | one_d = [1 for s in one] |
|
|
190 | 190 | two = [s[0].lower() for s in data['2D Parameters']['Data Parameters']] |
|
|
191 | 191 | two_d = [2 for s in two] |
|
|
192 | 192 | self.parameters = one + two |
|
|
193 | 193 | self.parameters_d = one_d + two_d |
|
|
194 | 194 | |
|
|
195 | 195 | log.success('Parameters found: {}'.format(','.join(self.parameters)), |
|
|
196 | 196 | 'MADReader') |
|
|
197 | 197 | if s_parameters: |
|
|
198 | 198 | log.success('Spatial parameters: {}'.format(','.join(s_parameters)), |
|
|
199 | 199 | 'MADReader') |
|
|
200 | 200 | |
|
|
201 | 201 | for param in list(self.oneDDict.keys()): |
|
|
202 | 202 | if param.lower() not in self.parameters: |
|
|
203 | 203 | log.warning( |
|
|
204 | 204 | 'Parameter {} not found will be ignored'.format( |
|
|
205 | 205 | param), |
|
|
206 | 206 | 'MADReader') |
|
|
207 | 207 | self.oneDDict.pop(param, None) |
|
|
208 | 208 | |
|
|
209 | 209 | for param, value in list(self.twoDDict.items()): |
|
|
210 | 210 | if param.lower() not in self.parameters: |
|
|
211 | 211 | log.warning( |
|
|
212 | 212 | 'Parameter {} not found, it will be ignored'.format( |
|
|
213 | 213 | param), |
|
|
214 | 214 | 'MADReader') |
|
|
215 | 215 | self.twoDDict.pop(param, None) |
|
|
216 | 216 | continue |
|
|
217 | 217 | if isinstance(value, list): |
|
|
218 | 218 | if value[0] not in self.output: |
|
|
219 | 219 | self.output[value[0]] = [] |
|
|
220 | 220 | self.output[value[0]].append(None) |
|
|
221 | 221 | |
|
|
222 | 222 | def parseData(self): |
|
|
223 | 223 | ''' |
|
|
224 | 224 | ''' |
|
|
225 | 225 | |
|
|
226 | 226 | if self.ext == '.txt': |
|
|
227 | 227 | self.data = numpy.genfromtxt(self.fp, missing_values=('missing')) |
|
|
228 | 228 | self.nrecords = self.data.shape[0] |
|
|
229 | 229 | self.ranges = numpy.unique(self.data[:,self.parameters.index(self.ind2DList[0].lower())]) |
|
|
230 | 230 | elif self.ext == '.hdf5': |
|
|
231 | 231 | self.data = self.fp['Data']['Array Layout'] |
|
|
232 | 232 | self.nrecords = len(self.data['timestamps'].value) |
|
|
233 | 233 | self.ranges = self.data['range'].value |
|
|
234 | 234 | |
|
|
235 | 235 | def setNextFile(self): |
|
|
236 | 236 | ''' |
|
|
237 | 237 | ''' |
|
|
238 | 238 | |
|
|
239 | 239 | file_id = self.fileId |
|
|
240 | 240 | |
|
|
241 | 241 | if file_id == len(self.fileList): |
|
|
242 | 242 | log.success('No more files', 'MADReader') |
|
|
243 | 243 | self.flagNoMoreFiles = 1 |
|
|
244 | 244 | return 0 |
|
|
245 | 245 | |
|
|
246 | 246 | log.success( |
|
|
247 | 247 | 'Opening: {}'.format(self.fileList[file_id]), |
|
|
248 | 248 | 'MADReader' |
|
|
249 | 249 | ) |
|
|
250 | 250 | |
|
|
251 | 251 | filename = os.path.join(self.path, self.fileList[file_id]) |
|
|
252 | 252 | |
|
|
253 | 253 | if self.filename is not None: |
|
|
254 | 254 | self.fp.close() |
|
|
255 | 255 | |
|
|
256 | 256 | self.filename = filename |
|
|
257 | 257 | self.filedate = self.dateFileList[file_id] |
|
|
258 | 258 | |
|
|
259 | 259 | if self.ext=='.hdf5': |
|
|
260 | 260 | self.fp = h5py.File(self.filename, 'r') |
|
|
261 | 261 | else: |
|
|
262 | 262 | self.fp = open(self.filename, 'rb') |
|
|
263 | 263 | |
|
|
264 | 264 | self.parseHeader() |
|
|
265 | 265 | self.parseData() |
|
|
266 | 266 | self.sizeOfFile = os.path.getsize(self.filename) |
|
|
267 | 267 | self.counter_records = 0 |
|
|
268 | 268 | self.flagIsNewFile = 0 |
|
|
269 | 269 | self.fileId += 1 |
|
|
270 | 270 | |
|
|
271 | 271 | return 1 |
|
|
272 | 272 | |
|
|
273 | 273 | def readNextBlock(self): |
|
|
274 | 274 | |
|
|
275 | 275 | while True: |
|
|
276 | 276 | self.flagDiscontinuousBlock = 0 |
|
|
277 | 277 | if self.flagIsNewFile: |
|
|
278 | 278 | if not self.setNextFile(): |
|
|
279 | 279 | return 0 |
|
|
280 | 280 | |
|
|
281 | 281 | self.readBlock() |
|
|
282 | 282 | |
|
|
283 | 283 | if (self.datatime < datetime.datetime.combine(self.startDate, self.startTime)) or \ |
|
|
284 | 284 | (self.datatime > datetime.datetime.combine(self.endDate, self.endTime)): |
|
|
285 | 285 | log.warning( |
|
|
286 | 286 | 'Reading Record No. {}/{} -> {} [Skipping]'.format( |
|
|
287 | 287 | self.counter_records, |
|
|
288 | 288 | self.nrecords, |
|
|
289 | 289 | self.datatime.ctime()), |
|
|
290 | 290 | 'MADReader') |
|
|
291 | 291 | continue |
|
|
292 | 292 | break |
|
|
293 | 293 | |
|
|
294 | 294 | log.log( |
|
|
295 | 295 | 'Reading Record No. {}/{} -> {}'.format( |
|
|
296 | 296 | self.counter_records, |
|
|
297 | 297 | self.nrecords, |
|
|
298 | 298 | self.datatime.ctime()), |
|
|
299 | 299 | 'MADReader') |
|
|
300 | 300 | |
|
|
301 | 301 | return 1 |
|
|
302 | 302 | |
|
|
303 | 303 | def readBlock(self): |
|
|
304 | 304 | ''' |
|
|
305 | 305 | ''' |
|
|
306 | 306 | dum = [] |
|
|
307 | 307 | if self.ext == '.txt': |
|
|
308 | 308 | dt = self.data[self.counter_records][:6].astype(int) |
|
|
309 | 309 | if datetime.datetime(dt[0], dt[1], dt[2], dt[3], dt[4], dt[5]).date() > self.datatime.date(): |
|
|
310 | 310 | self.flagDiscontinuousBlock = 1 |
|
|
311 | 311 | self.datatime = datetime.datetime(dt[0], dt[1], dt[2], dt[3], dt[4], dt[5]) |
|
|
312 | 312 | while True: |
|
|
313 | 313 | dt = self.data[self.counter_records][:6].astype(int) |
|
|
314 | 314 | datatime = datetime.datetime(dt[0], dt[1], dt[2], dt[3], dt[4], dt[5]) |
|
|
315 | 315 | if datatime == self.datatime: |
|
|
316 | 316 | dum.append(self.data[self.counter_records]) |
|
|
317 | 317 | self.counter_records += 1 |
|
|
318 | 318 | if self.counter_records == self.nrecords: |
|
|
319 | 319 | self.flagIsNewFile = True |
|
|
320 | 320 | break |
|
|
321 | 321 | continue |
|
|
322 | 322 | self.intervals.add((datatime-self.datatime).seconds) |
|
|
323 | 323 | break |
|
|
324 | 324 | elif self.ext == '.hdf5': |
|
|
325 | 325 | datatime = datetime.datetime.utcfromtimestamp( |
|
|
326 | 326 | self.data['timestamps'][self.counter_records]) |
|
|
327 | 327 | nHeights = len(self.ranges) |
|
|
328 | 328 | for n, param in enumerate(self.parameters): |
|
|
329 | 329 | if self.parameters_d[n] == 1: |
|
|
330 | 330 | dum.append(numpy.ones(nHeights)*self.data['1D Parameters'][param][self.counter_records]) |
|
|
331 | 331 | else: |
|
|
332 | 332 | if self.version == '2': |
|
|
333 | 333 | dum.append(self.data['2D Parameters'][param][self.counter_records]) |
|
|
334 | 334 | else: |
|
|
335 | 335 | tmp = self.data['2D Parameters'][param].value.T |
|
|
336 | 336 | dum.append(tmp[self.counter_records]) |
|
|
337 | 337 | self.intervals.add((datatime-self.datatime).seconds) |
|
|
338 | 338 | if datatime.date()>self.datatime.date(): |
|
|
339 | 339 | self.flagDiscontinuousBlock = 1 |
|
|
340 | 340 | self.datatime = datatime |
|
|
341 | 341 | self.counter_records += 1 |
|
|
342 | 342 | if self.counter_records == self.nrecords: |
|
|
343 | 343 | self.flagIsNewFile = True |
|
|
344 | 344 | |
|
|
345 | 345 | self.buffer = numpy.array(dum) |
|
|
346 | 346 | return |
|
|
347 | 347 | |
|
|
348 | 348 | def set_output(self): |
|
|
349 | 349 | ''' |
|
|
350 | 350 | Storing data from buffer to dataOut object |
|
|
351 | 351 | ''' |
|
|
352 | 352 | |
|
|
353 | 353 | parameters = [None for __ in self.parameters] |
|
|
354 | 354 | |
|
|
355 | 355 | for param, attr in list(self.oneDDict.items()): |
|
|
356 | 356 | x = self.parameters.index(param.lower()) |
|
|
357 | 357 | setattr(self.dataOut, attr, self.buffer[0][x]) |
|
|
358 | 358 | |
|
|
359 | 359 | for param, value in list(self.twoDDict.items()): |
|
|
360 | 360 | x = self.parameters.index(param.lower()) |
|
|
361 | 361 | if self.ext == '.txt': |
|
|
362 | 362 | y = self.parameters.index(self.ind2DList[0].lower()) |
|
|
363 | 363 | ranges = self.buffer[:,y] |
|
|
364 | 364 | if self.ranges.size == ranges.size: |
|
|
365 | 365 | continue |
|
|
366 | 366 | index = numpy.where(numpy.in1d(self.ranges, ranges))[0] |
|
|
367 | 367 | dummy = numpy.zeros(self.ranges.shape) + numpy.nan |
|
|
368 | 368 | dummy[index] = self.buffer[:,x] |
|
|
369 | 369 | else: |
|
|
370 | 370 | dummy = self.buffer[x] |
|
|
371 | 371 | |
|
|
372 | 372 | if isinstance(value, str): |
|
|
373 | 373 | if value not in self.ind2DList: |
|
|
374 | 374 | setattr(self.dataOut, value, dummy.reshape(1,-1)) |
|
|
375 | 375 | elif isinstance(value, list): |
|
|
376 | 376 | self.output[value[0]][value[1]] = dummy |
|
|
377 | 377 | parameters[value[1]] = param |
|
|
378 | 378 | |
|
|
379 | 379 | for key, value in list(self.output.items()): |
|
|
380 | 380 | setattr(self.dataOut, key, numpy.array(value)) |
|
|
381 | 381 | |
|
|
382 | 382 | self.dataOut.parameters = [s for s in parameters if s] |
|
|
383 | 383 | self.dataOut.heightList = self.ranges |
|
|
384 | 384 | self.dataOut.utctime = (self.datatime - datetime.datetime(1970, 1, 1)).total_seconds() |
|
|
385 | 385 | self.dataOut.utctimeInit = self.dataOut.utctime |
|
|
386 | 386 | self.dataOut.paramInterval = min(self.intervals) |
|
|
387 | 387 | self.dataOut.useLocalTime = False |
|
|
388 | 388 | self.dataOut.flagNoData = False |
|
|
389 | 389 | self.dataOut.nrecords = self.nrecords |
|
|
390 | 390 | self.dataOut.flagDiscontinuousBlock = self.flagDiscontinuousBlock |
|
|
391 | 391 | |
|
|
392 | 392 | def getData(self): |
|
|
393 | 393 | ''' |
|
|
394 | 394 | Storing data from databuffer to dataOut object |
|
|
395 | 395 | ''' |
|
|
396 | 396 | if self.flagNoMoreFiles: |
|
|
397 | 397 | self.dataOut.flagNoData = True |
|
|
398 |
|
|
|
|
398 | self.dataOut.error = 'No file left to process' | |
|
|
399 | 399 | return 0 |
|
|
400 | 400 | |
|
|
401 | 401 | if not self.readNextBlock(): |
|
|
402 | 402 | self.dataOut.flagNoData = True |
|
|
403 | 403 | return 0 |
|
|
404 | 404 | |
|
|
405 | 405 | self.set_output() |
|
|
406 | 406 | |
|
|
407 | 407 | return 1 |
|
|
408 | 408 | |
|
|
409 | 409 | |
|
|
410 | 410 | class MADWriter(Operation): |
|
|
411 | 411 | |
|
|
412 | 412 | missing = -32767 |
|
|
413 | 413 | |
|
|
414 | 414 | def __init__(self, **kwargs): |
|
|
415 | 415 | |
|
|
416 | 416 | Operation.__init__(self, **kwargs) |
|
|
417 | 417 | self.dataOut = Parameters() |
|
|
418 | 418 | self.counter = 0 |
|
|
419 | 419 | self.path = None |
|
|
420 | 420 | self.fp = None |
|
|
421 | 421 | |
|
|
422 | 422 | def run(self, dataOut, path, oneDDict, ind2DList='[]', twoDDict='{}', |
|
|
423 | 423 | metadata='{}', format='cedar', **kwargs): |
|
|
424 | 424 | ''' |
|
|
425 | 425 | Inputs: |
|
|
426 | 426 | path - path where files will be created |
|
|
427 | 427 | oneDDict - json of one-dimensional parameters in record where keys |
|
|
428 | 428 | are Madrigal codes (integers or mnemonics) and values the corresponding |
|
|
429 | 429 | dataOut attribute e.g: { |
|
|
430 | 430 | 'gdlatr': 'lat', |
|
|
431 | 431 | 'gdlonr': 'lon', |
|
|
432 | 432 | 'gdlat2':'lat', |
|
|
433 | 433 | 'glon2':'lon'} |
|
|
434 | 434 | ind2DList - list of independent spatial two-dimensional parameters e.g: |
|
|
435 | 435 | ['heighList'] |
|
|
436 | 436 | twoDDict - json of two-dimensional parameters in record where keys |
|
|
437 | 437 | are Madrigal codes (integers or mnemonics) and values the corresponding |
|
|
438 | 438 | dataOut attribute if multidimensional array specify as tupple |
|
|
439 | 439 | ('attr', pos) e.g: { |
|
|
440 | 440 | 'gdalt': 'heightList', |
|
|
441 | 441 | 'vn1p2': ('data_output', 0), |
|
|
442 | 442 | 'vn2p2': ('data_output', 1), |
|
|
443 | 443 | 'vn3': ('data_output', 2), |
|
|
444 | 444 | 'snl': ('data_SNR', 'db') |
|
|
445 | 445 | } |
|
|
446 | 446 | metadata - json of madrigal metadata (kinst, kindat, catalog and header) |
|
|
447 | 447 | ''' |
|
|
448 | 448 | if not self.isConfig: |
|
|
449 | 449 | self.setup(path, oneDDict, ind2DList, twoDDict, metadata, format, **kwargs) |
|
|
450 | 450 | self.isConfig = True |
|
|
451 | 451 | |
|
|
452 | 452 | self.dataOut = dataOut |
|
|
453 | 453 | self.putData() |
|
|
454 | 454 | return |
|
|
455 | 455 | |
|
|
456 | 456 | def setup(self, path, oneDDict, ind2DList, twoDDict, metadata, format, **kwargs): |
|
|
457 | 457 | ''' |
|
|
458 | 458 | Configure Operation |
|
|
459 | 459 | ''' |
|
|
460 | 460 | |
|
|
461 | 461 | self.path = path |
|
|
462 | 462 | self.blocks = kwargs.get('blocks', None) |
|
|
463 | 463 | self.counter = 0 |
|
|
464 | 464 | self.oneDDict = load_json(oneDDict) |
|
|
465 | 465 | self.twoDDict = load_json(twoDDict) |
|
|
466 | 466 | self.ind2DList = load_json(ind2DList) |
|
|
467 | 467 | meta = load_json(metadata) |
|
|
468 | 468 | self.kinst = meta.get('kinst') |
|
|
469 | 469 | self.kindat = meta.get('kindat') |
|
|
470 | 470 | self.catalog = meta.get('catalog', DEF_CATALOG) |
|
|
471 | 471 | self.header = meta.get('header', DEF_HEADER) |
|
|
472 | 472 | if format == 'cedar': |
|
|
473 | 473 | self.ext = '.dat' |
|
|
474 | 474 | self.extra_args = {} |
|
|
475 | 475 | elif format == 'hdf5': |
|
|
476 | 476 | self.ext = '.hdf5' |
|
|
477 | 477 | self.extra_args = {'ind2DList': self.ind2DList} |
|
|
478 | 478 | |
|
|
479 | 479 | self.keys = [k.lower() for k in self.twoDDict] |
|
|
480 | 480 | if 'range' in self.keys: |
|
|
481 | 481 | self.keys.remove('range') |
|
|
482 | 482 | if 'gdalt' in self.keys: |
|
|
483 | 483 | self.keys.remove('gdalt') |
|
|
484 | 484 | |
|
|
485 | 485 | def setFile(self): |
|
|
486 | 486 | ''' |
|
|
487 | 487 | Create new cedar file object |
|
|
488 | 488 | ''' |
|
|
489 | 489 | |
|
|
490 | 490 | self.mnemonic = MNEMONICS[self.kinst] #TODO get mnemonic from madrigal |
|
|
491 | 491 | date = datetime.datetime.utcfromtimestamp(self.dataOut.utctime) |
|
|
492 | 492 | |
|
|
493 | 493 | filename = '{}{}{}'.format(self.mnemonic, |
|
|
494 | 494 | date.strftime('%Y%m%d_%H%M%S'), |
|
|
495 | 495 | self.ext) |
|
|
496 | 496 | |
|
|
497 | 497 | self.fullname = os.path.join(self.path, filename) |
|
|
498 | 498 | |
|
|
499 | 499 | if os.path.isfile(self.fullname) : |
|
|
500 | 500 | log.warning( |
|
|
501 | 501 | 'Destination file {} already exists, previous file deleted.'.format( |
|
|
502 | 502 | self.fullname), |
|
|
503 | 503 | 'MADWriter') |
|
|
504 | 504 | os.remove(self.fullname) |
|
|
505 | 505 | |
|
|
506 | 506 | try: |
|
|
507 | 507 | log.success( |
|
|
508 | 508 | 'Creating file: {}'.format(self.fullname), |
|
|
509 | 509 | 'MADWriter') |
|
|
510 | 510 | self.fp = madrigal.cedar.MadrigalCedarFile(self.fullname, True) |
|
|
511 | 511 | except ValueError as e: |
|
|
512 | 512 | log.error( |
|
|
513 | 513 | 'Impossible to create a cedar object with "madrigal.cedar.MadrigalCedarFile"', |
|
|
514 | 514 | 'MADWriter') |
|
|
515 | 515 | return |
|
|
516 | 516 | |
|
|
517 | 517 | return 1 |
|
|
518 | 518 | |
|
|
519 | 519 | def writeBlock(self): |
|
|
520 | 520 | ''' |
|
|
521 | 521 | Add data records to cedar file taking data from oneDDict and twoDDict |
|
|
522 | 522 | attributes. |
|
|
523 | 523 | Allowed parameters in: parcodes.tab |
|
|
524 | 524 | ''' |
|
|
525 | 525 | |
|
|
526 | 526 | startTime = datetime.datetime.utcfromtimestamp(self.dataOut.utctime) |
|
|
527 | 527 | endTime = startTime + datetime.timedelta(seconds=self.dataOut.paramInterval) |
|
|
528 | 528 | heights = self.dataOut.heightList |
|
|
529 | 529 | |
|
|
530 | 530 | if self.ext == '.dat': |
|
|
531 | 531 | for key, value in list(self.twoDDict.items()): |
|
|
532 | 532 | if isinstance(value, str): |
|
|
533 | 533 | data = getattr(self.dataOut, value) |
|
|
534 | 534 | invalid = numpy.isnan(data) |
|
|
535 | 535 | data[invalid] = self.missing |
|
|
536 | 536 | elif isinstance(value, (tuple, list)): |
|
|
537 | 537 | attr, key = value |
|
|
538 | 538 | data = getattr(self.dataOut, attr) |
|
|
539 | 539 | invalid = numpy.isnan(data) |
|
|
540 | 540 | data[invalid] = self.missing |
|
|
541 | 541 | |
|
|
542 | 542 | out = {} |
|
|
543 | 543 | for key, value in list(self.twoDDict.items()): |
|
|
544 | 544 | key = key.lower() |
|
|
545 | 545 | if isinstance(value, str): |
|
|
546 | 546 | if 'db' in value.lower(): |
|
|
547 | 547 | tmp = getattr(self.dataOut, value.replace('_db', '')) |
|
|
548 | 548 | SNRavg = numpy.average(tmp, axis=0) |
|
|
549 | 549 | tmp = 10*numpy.log10(SNRavg) |
|
|
550 | 550 | else: |
|
|
551 | 551 | tmp = getattr(self.dataOut, value) |
|
|
552 | 552 | out[key] = tmp.flatten() |
|
|
553 | 553 | elif isinstance(value, (tuple, list)): |
|
|
554 | 554 | attr, x = value |
|
|
555 | 555 | data = getattr(self.dataOut, attr) |
|
|
556 | 556 | out[key] = data[int(x)] |
|
|
557 | 557 | |
|
|
558 | 558 | a = numpy.array([out[k] for k in self.keys]) |
|
|
559 | 559 | nrows = numpy.array([numpy.isnan(a[:, x]).all() for x in range(len(heights))]) |
|
|
560 | 560 | index = numpy.where(nrows == False)[0] |
|
|
561 | 561 | |
|
|
562 | 562 | rec = madrigal.cedar.MadrigalDataRecord( |
|
|
563 | 563 | self.kinst, |
|
|
564 | 564 | self.kindat, |
|
|
565 | 565 | startTime.year, |
|
|
566 | 566 | startTime.month, |
|
|
567 | 567 | startTime.day, |
|
|
568 | 568 | startTime.hour, |
|
|
569 | 569 | startTime.minute, |
|
|
570 | 570 | startTime.second, |
|
|
571 | 571 | startTime.microsecond/10000, |
|
|
572 | 572 | endTime.year, |
|
|
573 | 573 | endTime.month, |
|
|
574 | 574 | endTime.day, |
|
|
575 | 575 | endTime.hour, |
|
|
576 | 576 | endTime.minute, |
|
|
577 | 577 | endTime.second, |
|
|
578 | 578 | endTime.microsecond/10000, |
|
|
579 | 579 | list(self.oneDDict.keys()), |
|
|
580 | 580 | list(self.twoDDict.keys()), |
|
|
581 | 581 | len(index), |
|
|
582 | 582 | **self.extra_args |
|
|
583 | 583 | ) |
|
|
584 | 584 | |
|
|
585 | 585 | # Setting 1d values |
|
|
586 | 586 | for key in self.oneDDict: |
|
|
587 | 587 | rec.set1D(key, getattr(self.dataOut, self.oneDDict[key])) |
|
|
588 | 588 | |
|
|
589 | 589 | # Setting 2d values |
|
|
590 | 590 | nrec = 0 |
|
|
591 | 591 | for n in index: |
|
|
592 | 592 | for key in out: |
|
|
593 | 593 | rec.set2D(key, nrec, out[key][n]) |
|
|
594 | 594 | nrec += 1 |
|
|
595 | 595 | |
|
|
596 | 596 | self.fp.append(rec) |
|
|
597 | 597 | if self.ext == '.hdf5' and self.counter % 500 == 0 and self.counter > 0: |
|
|
598 | 598 | self.fp.dump() |
|
|
599 | 599 | if self.counter % 100 == 0 and self.counter > 0: |
|
|
600 | 600 | log.log( |
|
|
601 | 601 | 'Writing {} records'.format( |
|
|
602 | 602 | self.counter), |
|
|
603 | 603 | 'MADWriter') |
|
|
604 | 604 | |
|
|
605 | 605 | def setHeader(self): |
|
|
606 | 606 | ''' |
|
|
607 | 607 | Create an add catalog and header to cedar file |
|
|
608 | 608 | ''' |
|
|
609 | 609 | |
|
|
610 | 610 | log.success('Closing file {}'.format(self.fullname), 'MADWriter') |
|
|
611 | 611 | |
|
|
612 | 612 | if self.ext == '.dat': |
|
|
613 | 613 | self.fp.write() |
|
|
614 | 614 | else: |
|
|
615 | 615 | self.fp.dump() |
|
|
616 | 616 | self.fp.close() |
|
|
617 | 617 | |
|
|
618 | 618 | header = madrigal.cedar.CatalogHeaderCreator(self.fullname) |
|
|
619 | 619 | header.createCatalog(**self.catalog) |
|
|
620 | 620 | header.createHeader(**self.header) |
|
|
621 | 621 | header.write() |
|
|
622 | 622 | |
|
|
623 | 623 | def putData(self): |
|
|
624 | 624 | |
|
|
625 | 625 | if self.dataOut.flagNoData: |
|
|
626 | 626 | return 0 |
|
|
627 | 627 | |
|
|
628 | 628 | if self.dataOut.flagDiscontinuousBlock or self.counter == self.blocks: |
|
|
629 | 629 | if self.counter > 0: |
|
|
630 | 630 | self.setHeader() |
|
|
631 | 631 | self.counter = 0 |
|
|
632 | 632 | |
|
|
633 | 633 | if self.counter == 0: |
|
|
634 | 634 | self.setFile() |
|
|
635 | 635 | |
|
|
636 | 636 | self.writeBlock() |
|
|
637 | 637 | self.counter += 1 |
|
|
638 | 638 | |
|
|
639 | 639 | def close(self): |
|
|
640 | 640 | |
|
|
641 | 641 | if self.counter > 0: |
|
|
642 | 642 | self.setHeader() No newline at end of file |
| @@ -1,1093 +1,1036 | |||
|
|
1 | 1 | import numpy |
|
|
2 | 2 | import time |
|
|
3 | 3 | import os |
|
|
4 | 4 | import h5py |
|
|
5 | 5 | import re |
|
|
6 | 6 | import datetime |
|
|
7 | 7 | |
|
|
8 | 8 | from schainpy.model.data.jrodata import * |
|
|
9 | 9 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator |
|
|
10 | 10 | # from .jroIO_base import * |
|
|
11 | 11 | from schainpy.model.io.jroIO_base import * |
|
|
12 | 12 | import schainpy |
|
|
13 | 13 | from schainpy.utils import log |
|
|
14 | 14 | |
|
|
15 | 15 | @MPDecorator |
|
|
16 | 16 | class ParamReader(JRODataReader,ProcessingUnit): |
|
|
17 | 17 | ''' |
|
|
18 | 18 | Reads HDF5 format files |
|
|
19 | 19 | |
|
|
20 | 20 | path |
|
|
21 | 21 | |
|
|
22 | 22 | startDate |
|
|
23 | 23 | |
|
|
24 | 24 | endDate |
|
|
25 | 25 | |
|
|
26 | 26 | startTime |
|
|
27 | 27 | |
|
|
28 | 28 | endTime |
|
|
29 | 29 | ''' |
|
|
30 | 30 | |
|
|
31 | 31 | ext = ".hdf5" |
|
|
32 | 32 | |
|
|
33 | 33 | optchar = "D" |
|
|
34 | 34 | |
|
|
35 | 35 | timezone = None |
|
|
36 | 36 | |
|
|
37 | 37 | startTime = None |
|
|
38 | 38 | |
|
|
39 | 39 | endTime = None |
|
|
40 | 40 | |
|
|
41 | 41 | fileIndex = None |
|
|
42 | 42 | |
|
|
43 | 43 | utcList = None #To select data in the utctime list |
|
|
44 | 44 | |
|
|
45 | 45 | blockList = None #List to blocks to be read from the file |
|
|
46 | 46 | |
|
|
47 | 47 | blocksPerFile = None #Number of blocks to be read |
|
|
48 | 48 | |
|
|
49 | 49 | blockIndex = None |
|
|
50 | 50 | |
|
|
51 | 51 | path = None |
|
|
52 | 52 | |
|
|
53 | 53 | #List of Files |
|
|
54 | 54 | |
|
|
55 | 55 | filenameList = None |
|
|
56 | 56 | |
|
|
57 | 57 | datetimeList = None |
|
|
58 | 58 | |
|
|
59 | 59 | #Hdf5 File |
|
|
60 | 60 | |
|
|
61 | 61 | listMetaname = None |
|
|
62 | 62 | |
|
|
63 | 63 | listMeta = None |
|
|
64 | 64 | |
|
|
65 | 65 | listDataname = None |
|
|
66 | 66 | |
|
|
67 | 67 | listData = None |
|
|
68 | 68 | |
|
|
69 | 69 | listShapes = None |
|
|
70 | 70 | |
|
|
71 | 71 | fp = None |
|
|
72 | 72 | |
|
|
73 | 73 | #dataOut reconstruction |
|
|
74 | 74 | |
|
|
75 | 75 | dataOut = None |
|
|
76 | 76 | |
|
|
77 | 77 | |
|
|
78 | 78 | def __init__(self):#, **kwargs): |
|
|
79 | 79 | ProcessingUnit.__init__(self) #, **kwargs) |
|
|
80 | 80 | self.dataOut = Parameters() |
|
|
81 | 81 | return |
|
|
82 | 82 | |
|
|
83 | 83 | def setup(self, **kwargs): |
|
|
84 | 84 | |
|
|
85 | 85 | path = kwargs['path'] |
|
|
86 | 86 | startDate = kwargs['startDate'] |
|
|
87 | 87 | endDate = kwargs['endDate'] |
|
|
88 | 88 | startTime = kwargs['startTime'] |
|
|
89 | 89 | endTime = kwargs['endTime'] |
|
|
90 | 90 | walk = kwargs['walk'] |
|
|
91 | 91 | if 'ext' in kwargs: |
|
|
92 | 92 | ext = kwargs['ext'] |
|
|
93 | 93 | else: |
|
|
94 | 94 | ext = '.hdf5' |
|
|
95 | 95 | if 'timezone' in kwargs: |
|
|
96 | 96 | self.timezone = kwargs['timezone'] |
|
|
97 | 97 | else: |
|
|
98 | 98 | self.timezone = 'lt' |
|
|
99 | 99 | |
|
|
100 | 100 | print("[Reading] Searching files in offline mode ...") |
|
|
101 | 101 | pathList, filenameList = self.searchFilesOffLine(path, startDate=startDate, endDate=endDate, |
|
|
102 | 102 | startTime=startTime, endTime=endTime, |
|
|
103 | 103 | ext=ext, walk=walk) |
|
|
104 | 104 | |
|
|
105 | 105 | if not(filenameList): |
|
|
106 | 106 | print("There is no files into the folder: %s"%(path)) |
|
|
107 | 107 | sys.exit(-1) |
|
|
108 | 108 | |
|
|
109 | 109 | self.fileIndex = -1 |
|
|
110 | 110 | self.startTime = startTime |
|
|
111 | 111 | self.endTime = endTime |
|
|
112 | 112 | |
|
|
113 | 113 | self.__readMetadata() |
|
|
114 | 114 | |
|
|
115 | 115 | self.__setNextFileOffline() |
|
|
116 | 116 | |
|
|
117 | 117 | return |
|
|
118 | 118 | |
|
|
119 | 119 | def searchFilesOffLine(self, |
|
|
120 | 120 | path, |
|
|
121 | 121 | startDate=None, |
|
|
122 | 122 | endDate=None, |
|
|
123 | 123 | startTime=datetime.time(0,0,0), |
|
|
124 | 124 | endTime=datetime.time(23,59,59), |
|
|
125 | 125 | ext='.hdf5', |
|
|
126 | 126 | walk=True): |
|
|
127 | 127 | |
|
|
128 | 128 | expLabel = '' |
|
|
129 | 129 | self.filenameList = [] |
|
|
130 | 130 | self.datetimeList = [] |
|
|
131 | 131 | |
|
|
132 | 132 | pathList = [] |
|
|
133 | 133 | |
|
|
134 | 134 | JRODataObj = JRODataReader() |
|
|
135 | 135 | dateList, pathList = JRODataObj.findDatafiles(path, startDate, endDate, expLabel, ext, walk, include_path=True) |
|
|
136 | 136 | |
|
|
137 | 137 | if dateList == []: |
|
|
138 | 138 | print("[Reading] No *%s files in %s from %s to %s)"%(ext, path, |
|
|
139 | 139 | datetime.datetime.combine(startDate,startTime).ctime(), |
|
|
140 | 140 | datetime.datetime.combine(endDate,endTime).ctime())) |
|
|
141 | 141 | |
|
|
142 | 142 | return None, None |
|
|
143 | 143 | |
|
|
144 | 144 | if len(dateList) > 1: |
|
|
145 | 145 | print("[Reading] %d days were found in date range: %s - %s" %(len(dateList), startDate, endDate)) |
|
|
146 | 146 | else: |
|
|
147 | 147 | print("[Reading] data was found for the date %s" %(dateList[0])) |
|
|
148 | 148 | |
|
|
149 | 149 | filenameList = [] |
|
|
150 | 150 | datetimeList = [] |
|
|
151 | 151 | |
|
|
152 | 152 | #---------------------------------------------------------------------------------- |
|
|
153 | 153 | |
|
|
154 | 154 | for thisPath in pathList: |
|
|
155 | # thisPath = pathList[pathDict[file]] | |
|
|
155 | # thisPath = pathList[pathDict[file]] | |
|
|
156 | 156 | |
|
|
157 | 157 | fileList = glob.glob1(thisPath, "*%s" %ext) |
|
|
158 | 158 | fileList.sort() |
|
|
159 | 159 | |
|
|
160 | 160 | for file in fileList: |
|
|
161 | 161 | |
|
|
162 | 162 | filename = os.path.join(thisPath,file) |
|
|
163 | 163 | |
|
|
164 | 164 | if not isFileInDateRange(filename, startDate, endDate): |
|
|
165 | 165 | continue |
|
|
166 | 166 | |
|
|
167 | 167 | thisDatetime = self.__isFileInTimeRange(filename, startDate, endDate, startTime, endTime) |
|
|
168 | 168 | |
|
|
169 | 169 | if not(thisDatetime): |
|
|
170 | 170 | continue |
|
|
171 | 171 | |
|
|
172 | 172 | filenameList.append(filename) |
|
|
173 | 173 | datetimeList.append(thisDatetime) |
|
|
174 | 174 | |
|
|
175 | 175 | if not(filenameList): |
|
|
176 | 176 | print("[Reading] Any file was found int time range %s - %s" %(datetime.datetime.combine(startDate,startTime).ctime(), datetime.datetime.combine(endDate,endTime).ctime())) |
|
|
177 | 177 | return None, None |
|
|
178 | 178 | |
|
|
179 | 179 | print("[Reading] %d file(s) was(were) found in time range: %s - %s" %(len(filenameList), startTime, endTime)) |
|
|
180 | 180 | print() |
|
|
181 | 181 | |
|
|
182 | 182 | self.filenameList = filenameList |
|
|
183 | 183 | self.datetimeList = datetimeList |
|
|
184 | 184 | |
|
|
185 | 185 | return pathList, filenameList |
|
|
186 | 186 | |
|
|
187 | 187 | def __isFileInTimeRange(self,filename, startDate, endDate, startTime, endTime): |
|
|
188 | 188 | |
|
|
189 | 189 | """ |
|
|
190 | 190 | Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado. |
|
|
191 | 191 | |
|
|
192 | 192 | Inputs: |
|
|
193 | 193 | filename : nombre completo del archivo de datos en formato Jicamarca (.r) |
|
|
194 | 194 | |
|
|
195 | 195 | startDate : fecha inicial del rango seleccionado en formato datetime.date |
|
|
196 | 196 | |
|
|
197 | 197 | endDate : fecha final del rango seleccionado en formato datetime.date |
|
|
198 | 198 | |
|
|
199 | 199 | startTime : tiempo inicial del rango seleccionado en formato datetime.time |
|
|
200 | 200 | |
|
|
201 | 201 | endTime : tiempo final del rango seleccionado en formato datetime.time |
|
|
202 | 202 | |
|
|
203 | 203 | Return: |
|
|
204 | 204 | Boolean : Retorna True si el archivo de datos contiene datos en el rango de |
|
|
205 | 205 | fecha especificado, de lo contrario retorna False. |
|
|
206 | 206 | |
|
|
207 | 207 | Excepciones: |
|
|
208 | 208 | Si el archivo no existe o no puede ser abierto |
|
|
209 | 209 | Si la cabecera no puede ser leida. |
|
|
210 | 210 | |
|
|
211 | 211 | """ |
|
|
212 | 212 | |
|
|
213 | 213 | try: |
|
|
214 | 214 | fp = h5py.File(filename,'r') |
|
|
215 | 215 | grp1 = fp['Data'] |
|
|
216 | 216 | |
|
|
217 | 217 | except IOError: |
|
|
218 | 218 | traceback.print_exc() |
|
|
219 | 219 | raise IOError("The file %s can't be opened" %(filename)) |
|
|
220 | 220 | #chino rata |
|
|
221 | 221 | #In case has utctime attribute |
|
|
222 | 222 | grp2 = grp1['utctime'] |
|
|
223 | # thisUtcTime = grp2.value[0] - 5*3600 #To convert to local time | |
|
|
223 | # thisUtcTime = grp2.value[0] - 5*3600 #To convert to local time | |
|
|
224 | 224 | thisUtcTime = grp2.value[0] |
|
|
225 | 225 | |
|
|
226 | 226 | fp.close() |
|
|
227 | 227 | |
|
|
228 | 228 | if self.timezone == 'lt': |
|
|
229 | 229 | thisUtcTime -= 5*3600 |
|
|
230 | 230 | |
|
|
231 | 231 | thisDatetime = datetime.datetime.fromtimestamp(thisUtcTime[0] + 5*3600) |
|
|
232 | # thisDatetime = datetime.datetime.fromtimestamp(thisUtcTime[0]) | |
|
|
232 | # thisDatetime = datetime.datetime.fromtimestamp(thisUtcTime[0]) | |
|
|
233 | 233 | thisDate = thisDatetime.date() |
|
|
234 | 234 | thisTime = thisDatetime.time() |
|
|
235 | 235 | |
|
|
236 | 236 | startUtcTime = (datetime.datetime.combine(thisDate,startTime)- datetime.datetime(1970, 1, 1)).total_seconds() |
|
|
237 | 237 | endUtcTime = (datetime.datetime.combine(thisDate,endTime)- datetime.datetime(1970, 1, 1)).total_seconds() |
|
|
238 | 238 | |
|
|
239 | 239 | #General case |
|
|
240 | 240 | # o>>>>>>>>>>>>>><<<<<<<<<<<<<<o |
|
|
241 | 241 | #-----------o----------------------------o----------- |
|
|
242 | 242 | # startTime endTime |
|
|
243 | 243 | |
|
|
244 | 244 | if endTime >= startTime: |
|
|
245 | 245 | thisUtcLog = numpy.logical_and(thisUtcTime > startUtcTime, thisUtcTime < endUtcTime) |
|
|
246 | 246 | if numpy.any(thisUtcLog): #If there is one block between the hours mentioned |
|
|
247 | 247 | return thisDatetime |
|
|
248 | 248 | return None |
|
|
249 | 249 | |
|
|
250 | 250 | #If endTime < startTime then endTime belongs to the next day |
|
|
251 | 251 | #<<<<<<<<<<<o o>>>>>>>>>>> |
|
|
252 | 252 | #-----------o----------------------------o----------- |
|
|
253 | 253 | # endTime startTime |
|
|
254 | 254 | |
|
|
255 | 255 | if (thisDate == startDate) and numpy.all(thisUtcTime < startUtcTime): |
|
|
256 | 256 | return None |
|
|
257 | 257 | |
|
|
258 | 258 | if (thisDate == endDate) and numpy.all(thisUtcTime > endUtcTime): |
|
|
259 | 259 | return None |
|
|
260 | 260 | |
|
|
261 | 261 | if numpy.all(thisUtcTime < startUtcTime) and numpy.all(thisUtcTime > endUtcTime): |
|
|
262 | 262 | return None |
|
|
263 | 263 | |
|
|
264 | 264 | return thisDatetime |
|
|
265 | 265 | |
|
|
266 | 266 | def __setNextFileOffline(self): |
|
|
267 | 267 | |
|
|
268 | 268 | self.fileIndex += 1 |
|
|
269 | 269 | idFile = self.fileIndex |
|
|
270 | 270 | |
|
|
271 | 271 | if not(idFile < len(self.filenameList)): |
|
|
272 | 272 | print("No more Files") |
|
|
273 | 273 | return 0 |
|
|
274 | 274 | |
|
|
275 | 275 | filename = self.filenameList[idFile] |
|
|
276 | 276 | |
|
|
277 | 277 | filePointer = h5py.File(filename,'r') |
|
|
278 | 278 | |
|
|
279 | 279 | self.filename = filename |
|
|
280 | 280 | |
|
|
281 | 281 | self.fp = filePointer |
|
|
282 | 282 | |
|
|
283 | 283 | print("Setting the file: %s"%self.filename) |
|
|
284 | 284 | |
|
|
285 | # self.__readMetadata() | |
|
|
285 | # self.__readMetadata() | |
|
|
286 | 286 | self.__setBlockList() |
|
|
287 | 287 | self.__readData() |
|
|
288 | # self.nRecords = self.fp['Data'].attrs['blocksPerFile'] | |
|
|
289 | # self.nRecords = self.fp['Data'].attrs['nRecords'] | |
|
|
288 | # self.nRecords = self.fp['Data'].attrs['blocksPerFile'] | |
|
|
289 | # self.nRecords = self.fp['Data'].attrs['nRecords'] | |
|
|
290 | 290 | self.blockIndex = 0 |
|
|
291 | 291 | return 1 |
|
|
292 | 292 | |
|
|
293 | 293 | def __setBlockList(self): |
|
|
294 | 294 | ''' |
|
|
295 | 295 | Selects the data within the times defined |
|
|
296 | 296 | |
|
|
297 | 297 | self.fp |
|
|
298 | 298 | self.startTime |
|
|
299 | 299 | self.endTime |
|
|
300 | 300 | |
|
|
301 | 301 | self.blockList |
|
|
302 | 302 | self.blocksPerFile |
|
|
303 | 303 | |
|
|
304 | 304 | ''' |
|
|
305 | 305 | fp = self.fp |
|
|
306 | 306 | startTime = self.startTime |
|
|
307 | 307 | endTime = self.endTime |
|
|
308 | 308 | |
|
|
309 | 309 | grp = fp['Data'] |
|
|
310 | 310 | thisUtcTime = grp['utctime'].value.astype(numpy.float)[0] |
|
|
311 | 311 | |
|
|
312 | 312 | #ERROOOOR |
|
|
313 | 313 | if self.timezone == 'lt': |
|
|
314 | 314 | thisUtcTime -= 5*3600 |
|
|
315 | 315 | |
|
|
316 | 316 | thisDatetime = datetime.datetime.fromtimestamp(thisUtcTime[0] + 5*3600) |
|
|
317 | 317 | |
|
|
318 | 318 | thisDate = thisDatetime.date() |
|
|
319 | 319 | thisTime = thisDatetime.time() |
|
|
320 | 320 | |
|
|
321 | 321 | startUtcTime = (datetime.datetime.combine(thisDate,startTime) - datetime.datetime(1970, 1, 1)).total_seconds() |
|
|
322 | 322 | endUtcTime = (datetime.datetime.combine(thisDate,endTime) - datetime.datetime(1970, 1, 1)).total_seconds() |
|
|
323 | 323 | |
|
|
324 | 324 | ind = numpy.where(numpy.logical_and(thisUtcTime >= startUtcTime, thisUtcTime < endUtcTime))[0] |
|
|
325 | 325 | |
|
|
326 | 326 | self.blockList = ind |
|
|
327 | 327 | self.blocksPerFile = len(ind) |
|
|
328 | 328 | |
|
|
329 | 329 | return |
|
|
330 | 330 | |
|
|
331 | 331 | def __readMetadata(self): |
|
|
332 | 332 | ''' |
|
|
333 | 333 | Reads Metadata |
|
|
334 | 334 | |
|
|
335 | 335 | self.pathMeta |
|
|
336 | 336 | |
|
|
337 | 337 | self.listShapes |
|
|
338 | 338 | self.listMetaname |
|
|
339 | 339 | self.listMeta |
|
|
340 | 340 | |
|
|
341 | 341 | ''' |
|
|
342 | 342 | |
|
|
343 | # grp = self.fp['Data'] | |
|
|
344 | # pathMeta = os.path.join(self.path, grp.attrs['metadata']) | |
|
|
345 | # | |
|
|
346 | # if pathMeta == self.pathMeta: | |
|
|
347 | # return | |
|
|
348 | # else: | |
|
|
349 | # self.pathMeta = pathMeta | |
|
|
350 | # | |
|
|
351 | # filePointer = h5py.File(self.pathMeta,'r') | |
|
|
352 | # groupPointer = filePointer['Metadata'] | |
|
|
343 | # grp = self.fp['Data'] | |
|
|
344 | # pathMeta = os.path.join(self.path, grp.attrs['metadata']) | |
|
|
345 | # | |
|
|
346 | # if pathMeta == self.pathMeta: | |
|
|
347 | # return | |
|
|
348 | # else: | |
|
|
349 | # self.pathMeta = pathMeta | |
|
|
350 | # | |
|
|
351 | # filePointer = h5py.File(self.pathMeta,'r') | |
|
|
352 | # groupPointer = filePointer['Metadata'] | |
|
|
353 | 353 | |
|
|
354 | 354 | filename = self.filenameList[0] |
|
|
355 | 355 | |
|
|
356 | 356 | fp = h5py.File(filename,'r') |
|
|
357 | 357 | |
|
|
358 | 358 | gp = fp['Metadata'] |
|
|
359 | 359 | |
|
|
360 | 360 | listMetaname = [] |
|
|
361 | 361 | listMetadata = [] |
|
|
362 | 362 | for item in list(gp.items()): |
|
|
363 | 363 | name = item[0] |
|
|
364 | 364 | |
|
|
365 | 365 | if name=='array dimensions': |
|
|
366 | 366 | table = gp[name][:] |
|
|
367 | 367 | listShapes = {} |
|
|
368 | 368 | for shapes in table: |
|
|
369 | 369 | listShapes[shapes[0]] = numpy.array([shapes[1],shapes[2],shapes[3],shapes[4],shapes[5]]) |
|
|
370 | 370 | else: |
|
|
371 | 371 | data = gp[name].value |
|
|
372 | 372 | listMetaname.append(name) |
|
|
373 | 373 | listMetadata.append(data) |
|
|
374 | 374 | |
|
|
375 | # if name=='type': | |
|
|
376 | # self.__initDataOut(data) | |
|
|
375 | # if name=='type': | |
|
|
376 | # self.__initDataOut(data) | |
|
|
377 | 377 | |
|
|
378 | 378 | self.listShapes = listShapes |
|
|
379 | 379 | self.listMetaname = listMetaname |
|
|
380 | 380 | self.listMeta = listMetadata |
|
|
381 | 381 | |
|
|
382 | 382 | fp.close() |
|
|
383 | 383 | return |
|
|
384 | 384 | |
|
|
385 | 385 | def __readData(self): |
|
|
386 | 386 | grp = self.fp['Data'] |
|
|
387 | 387 | listdataname = [] |
|
|
388 | 388 | listdata = [] |
|
|
389 | 389 | |
|
|
390 | 390 | for item in list(grp.items()): |
|
|
391 | 391 | name = item[0] |
|
|
392 | 392 | listdataname.append(name) |
|
|
393 | 393 | |
|
|
394 | 394 | array = self.__setDataArray(grp[name],self.listShapes[name]) |
|
|
395 | 395 | listdata.append(array) |
|
|
396 | 396 | |
|
|
397 | 397 | self.listDataname = listdataname |
|
|
398 | 398 | self.listData = listdata |
|
|
399 | 399 | return |
|
|
400 | 400 | |
|
|
401 | 401 | def __setDataArray(self, dataset, shapes): |
|
|
402 | 402 | |
|
|
403 | 403 | nDims = shapes[0] |
|
|
404 | 404 | |
|
|
405 | 405 | nDim2 = shapes[1] #Dimension 0 |
|
|
406 | 406 | |
|
|
407 | 407 | nDim1 = shapes[2] #Dimension 1, number of Points or Parameters |
|
|
408 | 408 | |
|
|
409 | 409 | nDim0 = shapes[3] #Dimension 2, number of samples or ranges |
|
|
410 | 410 | |
|
|
411 | 411 | mode = shapes[4] #Mode of storing |
|
|
412 | 412 | |
|
|
413 | 413 | blockList = self.blockList |
|
|
414 | 414 | |
|
|
415 | 415 | blocksPerFile = self.blocksPerFile |
|
|
416 | 416 | |
|
|
417 | 417 | #Depending on what mode the data was stored |
|
|
418 | 418 | if mode == 0: #Divided in channels |
|
|
419 | 419 | arrayData = dataset.value.astype(numpy.float)[0][blockList] |
|
|
420 | 420 | if mode == 1: #Divided in parameter |
|
|
421 | 421 | strds = 'table' |
|
|
422 | 422 | nDatas = nDim1 |
|
|
423 | 423 | newShapes = (blocksPerFile,nDim2,nDim0) |
|
|
424 | 424 | elif mode==2: #Concatenated in a table |
|
|
425 | 425 | strds = 'table0' |
|
|
426 | 426 | arrayData = dataset[strds].value |
|
|
427 | 427 | #Selecting part of the dataset |
|
|
428 | 428 | utctime = arrayData[:,0] |
|
|
429 | 429 | u, indices = numpy.unique(utctime, return_index=True) |
|
|
430 | 430 | |
|
|
431 | 431 | if blockList.size != indices.size: |
|
|
432 | 432 | indMin = indices[blockList[0]] |
|
|
433 | 433 | if blockList[1] + 1 >= indices.size: |
|
|
434 | 434 | arrayData = arrayData[indMin:,:] |
|
|
435 | 435 | else: |
|
|
436 | 436 | indMax = indices[blockList[1] + 1] |
|
|
437 | 437 | arrayData = arrayData[indMin:indMax,:] |
|
|
438 | 438 | return arrayData |
|
|
439 | 439 | |
|
|
440 | 440 | # One dimension |
|
|
441 | 441 | if nDims == 0: |
|
|
442 | 442 | arrayData = dataset.value.astype(numpy.float)[0][blockList] |
|
|
443 | 443 | |
|
|
444 | 444 | # Two dimensions |
|
|
445 | 445 | elif nDims == 2: |
|
|
446 | 446 | arrayData = numpy.zeros((blocksPerFile,nDim1,nDim0)) |
|
|
447 | 447 | newShapes = (blocksPerFile,nDim0) |
|
|
448 | 448 | nDatas = nDim1 |
|
|
449 | 449 | |
|
|
450 | 450 | for i in range(nDatas): |
|
|
451 | 451 | data = dataset[strds + str(i)].value |
|
|
452 | 452 | arrayData[:,i,:] = data[blockList,:] |
|
|
453 | 453 | |
|
|
454 | 454 | # Three dimensions |
|
|
455 | 455 | else: |
|
|
456 | 456 | arrayData = numpy.zeros((blocksPerFile,nDim2,nDim1,nDim0)) |
|
|
457 | 457 | for i in range(nDatas): |
|
|
458 | 458 | |
|
|
459 | 459 | data = dataset[strds + str(i)].value |
|
|
460 | 460 | |
|
|
461 | 461 | for b in range(blockList.size): |
|
|
462 | 462 | arrayData[b,:,i,:] = data[:,:,blockList[b]] |
|
|
463 | 463 | |
|
|
464 | 464 | return arrayData |
|
|
465 | 465 | |
|
|
466 | 466 | def __setDataOut(self): |
|
|
467 | 467 | listMeta = self.listMeta |
|
|
468 | 468 | listMetaname = self.listMetaname |
|
|
469 | 469 | listDataname = self.listDataname |
|
|
470 | 470 | listData = self.listData |
|
|
471 | 471 | listShapes = self.listShapes |
|
|
472 | 472 | |
|
|
473 | 473 | blockIndex = self.blockIndex |
|
|
474 | # blockList = self.blockList | |
|
|
474 | # blockList = self.blockList | |
|
|
475 | 475 | |
|
|
476 | 476 | for i in range(len(listMeta)): |
|
|
477 | 477 | setattr(self.dataOut,listMetaname[i],listMeta[i]) |
|
|
478 | 478 | |
|
|
479 | 479 | for j in range(len(listData)): |
|
|
480 | 480 | nShapes = listShapes[listDataname[j]][0] |
|
|
481 | 481 | mode = listShapes[listDataname[j]][4] |
|
|
482 | 482 | if nShapes == 1: |
|
|
483 | 483 | setattr(self.dataOut,listDataname[j],listData[j][blockIndex]) |
|
|
484 | 484 | elif nShapes > 1: |
|
|
485 | 485 | setattr(self.dataOut,listDataname[j],listData[j][blockIndex,:]) |
|
|
486 | 486 | elif mode==0: |
|
|
487 | 487 | setattr(self.dataOut,listDataname[j],listData[j][blockIndex]) |
|
|
488 | 488 | #Mode Meteors |
|
|
489 | 489 | elif mode ==2: |
|
|
490 | 490 | selectedData = self.__selectDataMode2(listData[j], blockIndex) |
|
|
491 | 491 | setattr(self.dataOut, listDataname[j], selectedData) |
|
|
492 | 492 | return |
|
|
493 | 493 | |
|
|
494 | 494 | def __selectDataMode2(self, data, blockIndex): |
|
|
495 | 495 | utctime = data[:,0] |
|
|
496 | 496 | aux, indices = numpy.unique(utctime, return_inverse=True) |
|
|
497 | 497 | selInd = numpy.where(indices == blockIndex)[0] |
|
|
498 | 498 | selData = data[selInd,:] |
|
|
499 | 499 | |
|
|
500 | 500 | return selData |
|
|
501 | 501 | |
|
|
502 | 502 | def getData(self): |
|
|
503 | 503 | |
|
|
504 | 504 | if self.blockIndex==self.blocksPerFile: |
|
|
505 | 505 | if not( self.__setNextFileOffline() ): |
|
|
506 | 506 | self.dataOut.flagNoData = True |
|
|
507 | 507 | return 0 |
|
|
508 | 508 | |
|
|
509 | 509 | self.__setDataOut() |
|
|
510 | 510 | self.dataOut.flagNoData = False |
|
|
511 | 511 | |
|
|
512 | 512 | self.blockIndex += 1 |
|
|
513 | 513 | |
|
|
514 | 514 | return |
|
|
515 | 515 | |
|
|
516 | 516 | def run(self, **kwargs): |
|
|
517 | 517 | |
|
|
518 | 518 | if not(self.isConfig): |
|
|
519 | 519 | self.setup(**kwargs) |
|
|
520 | # self.setObjProperties() | |
|
|
520 | # self.setObjProperties() | |
|
|
521 | 521 | self.isConfig = True |
|
|
522 | 522 | |
|
|
523 | 523 | self.getData() |
|
|
524 | 524 | |
|
|
525 | 525 | return |
|
|
526 | ||
|
|
526 | 527 | @MPDecorator |
|
|
527 | 528 | class ParamWriter(Operation): |
|
|
528 | 529 | ''' |
|
|
529 | 530 | HDF5 Writer, stores parameters data in HDF5 format files |
|
|
530 | 531 | |
|
|
531 | 532 | path: path where the files will be stored |
|
|
532 | 533 | |
|
|
533 | 534 | blocksPerFile: number of blocks that will be saved in per HDF5 format file |
|
|
534 | 535 | |
|
|
535 | 536 | mode: selects the data stacking mode: '0' channels, '1' parameters, '3' table (for meteors) |
|
|
536 | 537 | |
|
|
537 | 538 | metadataList: list of attributes that will be stored as metadata |
|
|
538 | 539 | |
|
|
539 | 540 | dataList: list of attributes that will be stores as data |
|
|
540 | 541 | |
|
|
541 | 542 | ''' |
|
|
542 | 543 | |
|
|
543 | 544 | |
|
|
544 | 545 | ext = ".hdf5" |
|
|
545 | ||
|
|
546 | 546 | optchar = "D" |
|
|
547 | ||
|
|
548 | 547 | metaoptchar = "M" |
|
|
549 | ||
|
|
550 | 548 | metaFile = None |
|
|
551 | ||
|
|
552 | 549 | filename = None |
|
|
553 | ||
|
|
554 | 550 | path = None |
|
|
555 | ||
|
|
556 | 551 | setFile = None |
|
|
557 | ||
|
|
558 | 552 | fp = None |
|
|
559 | ||
|
|
560 | 553 | grp = None |
|
|
561 | ||
|
|
562 | 554 | ds = None |
|
|
563 | ||
|
|
564 | 555 | firsttime = True |
|
|
565 | ||
|
|
566 | 556 | #Configurations |
|
|
567 | ||
|
|
568 | 557 | blocksPerFile = None |
|
|
569 | ||
|
|
570 | 558 | blockIndex = None |
|
|
571 | ||
|
|
572 | 559 | dataOut = None |
|
|
573 | ||
|
|
574 | 560 | #Data Arrays |
|
|
575 | ||
|
|
576 | 561 | dataList = None |
|
|
577 | ||
|
|
578 | 562 | metadataList = None |
|
|
579 | ||
|
|
580 | # arrayDim = None | |
|
|
581 | ||
|
|
582 | 563 | dsList = None #List of dictionaries with dataset properties |
|
|
583 | ||
|
|
584 | 564 | tableDim = None |
|
|
585 | ||
|
|
586 | # dtype = [('arrayName', 'S20'),('nChannels', 'i'), ('nPoints', 'i'), ('nSamples', 'i'),('mode', 'b')] | |
|
|
587 | ||
|
|
588 | 565 | dtype = [('arrayName', 'S20'),('nDimensions', 'i'), ('dim2', 'i'), ('dim1', 'i'),('dim0', 'i'),('mode', 'b')] |
|
|
589 | ||
|
|
590 | 566 | currentDay = None |
|
|
591 | ||
|
|
592 | 567 | lastTime = None |
|
|
593 | 568 | |
|
|
594 |
def __init__(self): |
|
|
|
595 | Operation.__init__(self)#, **kwargs) | |
|
|
596 | #self.isConfig = False | |
|
|
569 | def __init__(self): | |
|
|
570 | ||
|
|
571 | Operation.__init__(self) | |
|
|
597 | 572 | return |
|
|
598 | 573 | |
|
|
599 |
def setup(self, dataOut, path=None, blocksPerFile=10, metadataList=None, dataList=None, mode=None, |
|
|
|
574 | def setup(self, dataOut, path=None, blocksPerFile=10, metadataList=None, dataList=None, mode=None, setType=None): | |
|
|
600 | 575 | self.path = path |
|
|
601 | 576 | self.blocksPerFile = blocksPerFile |
|
|
602 | 577 | self.metadataList = metadataList |
|
|
603 | 578 | self.dataList = dataList |
|
|
604 | 579 | self.dataOut = dataOut |
|
|
605 | 580 | self.mode = mode |
|
|
606 | 581 | if self.mode is not None: |
|
|
607 | 582 | self.mode = numpy.zeros(len(self.dataList)) + mode |
|
|
608 | 583 | else: |
|
|
609 | #self.mode = numpy.ones(len(self.dataList),int) | |
|
|
610 | 584 | self.mode = numpy.ones(len(self.dataList)) |
|
|
611 | log.error(self.mode)#yong | |
|
|
585 | ||
|
|
586 | self.setType = setType | |
|
|
612 | 587 | |
|
|
613 | 588 | arrayDim = numpy.zeros((len(self.dataList),5)) |
|
|
614 | 589 | |
|
|
615 | 590 | #Table dimensions |
|
|
616 | 591 | dtype0 = self.dtype |
|
|
617 | 592 | tableList = [] |
|
|
618 | 593 | |
|
|
619 | 594 | #Dictionary and list of tables |
|
|
620 | 595 | dsList = [] |
|
|
621 | 596 | |
|
|
622 | 597 | for i in range(len(self.dataList)): |
|
|
623 | 598 | dsDict = {} |
|
|
624 | 599 | dataAux = getattr(self.dataOut, self.dataList[i]) |
|
|
625 | 600 | dsDict['variable'] = self.dataList[i] |
|
|
626 | 601 | #--------------------- Conditionals ------------------------ |
|
|
627 | 602 | #There is no data |
|
|
628 | 603 | |
|
|
629 | 604 | |
|
|
630 | 605 | if dataAux is None: |
|
|
631 | 606 | |
|
|
632 | 607 | return 0 |
|
|
633 | 608 | |
|
|
634 | #Not array, just a number | |
|
|
635 | #Mode 0 | |
|
|
636 | #log.error(mode)#yong | |
|
|
637 | #log.error(len(mode))#yong | |
|
|
638 | #log.error(type(mode))#yong | |
|
|
639 | 609 | if type(dataAux)==float or type(dataAux)==int: |
|
|
640 | 610 | dsDict['mode'] = 0 |
|
|
641 | 611 | dsDict['nDim'] = 0 |
|
|
642 | 612 | arrayDim[i,0] = 0 |
|
|
643 | 613 | dsList.append(dsDict) |
|
|
644 | 614 | |
|
|
645 | 615 | #Mode 2: meteors |
|
|
646 | 616 | elif self.mode[i] == 2: |
|
|
647 | # dsDict['nDim'] = 0 | |
|
|
648 | 617 | dsDict['dsName'] = 'table0' |
|
|
649 | 618 | dsDict['mode'] = 2 # Mode meteors |
|
|
650 | 619 | dsDict['shape'] = dataAux.shape[-1] |
|
|
651 | 620 | dsDict['nDim'] = 0 |
|
|
652 | 621 | dsDict['dsNumber'] = 1 |
|
|
653 | ||
|
|
654 | 622 | arrayDim[i,3] = dataAux.shape[-1] |
|
|
655 | 623 | arrayDim[i,4] = self.mode[i] #Mode the data was stored |
|
|
656 | ||
|
|
657 | 624 | dsList.append(dsDict) |
|
|
658 | 625 | |
|
|
659 | 626 | #Mode 1 |
|
|
660 | 627 | else: |
|
|
661 | 628 | arrayDim0 = dataAux.shape #Data dimensions |
|
|
662 | 629 | arrayDim[i,0] = len(arrayDim0) #Number of array dimensions |
|
|
663 | 630 | arrayDim[i,4] = self.mode[i] #Mode the data was stored |
|
|
664 | ||
|
|
665 | 631 | strtable = 'table' |
|
|
666 | 632 | dsDict['mode'] = 1 # Mode parameters |
|
|
667 | 633 | |
|
|
668 | 634 | # Three-dimension arrays |
|
|
669 | 635 | if len(arrayDim0) == 3: |
|
|
670 | 636 | arrayDim[i,1:-1] = numpy.array(arrayDim0) |
|
|
671 | 637 | nTables = int(arrayDim[i,2]) |
|
|
672 | 638 | dsDict['dsNumber'] = nTables |
|
|
673 | 639 | dsDict['shape'] = arrayDim[i,2:4] |
|
|
674 | 640 | dsDict['nDim'] = 3 |
|
|
675 | 641 | |
|
|
676 | 642 | for j in range(nTables): |
|
|
677 | 643 | dsDict = dsDict.copy() |
|
|
678 | 644 | dsDict['dsName'] = strtable + str(j) |
|
|
679 | 645 | dsList.append(dsDict) |
|
|
680 | 646 | |
|
|
681 | 647 | # Two-dimension arrays |
|
|
682 | 648 | elif len(arrayDim0) == 2: |
|
|
683 | 649 | arrayDim[i,2:-1] = numpy.array(arrayDim0) |
|
|
684 | 650 | nTables = int(arrayDim[i,2]) |
|
|
685 | 651 | dsDict['dsNumber'] = nTables |
|
|
686 | 652 | dsDict['shape'] = arrayDim[i,3] |
|
|
687 | 653 | dsDict['nDim'] = 2 |
|
|
688 | 654 | |
|
|
689 | 655 | for j in range(nTables): |
|
|
690 | 656 | dsDict = dsDict.copy() |
|
|
691 | 657 | dsDict['dsName'] = strtable + str(j) |
|
|
692 | 658 | dsList.append(dsDict) |
|
|
693 | 659 | |
|
|
694 | 660 | # One-dimension arrays |
|
|
695 | 661 | elif len(arrayDim0) == 1: |
|
|
696 | 662 | arrayDim[i,3] = arrayDim0[0] |
|
|
697 | 663 | dsDict['shape'] = arrayDim0[0] |
|
|
698 | 664 | dsDict['dsNumber'] = 1 |
|
|
699 | 665 | dsDict['dsName'] = strtable + str(0) |
|
|
700 | 666 | dsDict['nDim'] = 1 |
|
|
701 | 667 | dsList.append(dsDict) |
|
|
702 | 668 | |
|
|
703 | 669 | table = numpy.array((self.dataList[i],) + tuple(arrayDim[i,:]),dtype = dtype0) |
|
|
704 | 670 | tableList.append(table) |
|
|
705 | 671 | |
|
|
706 | # self.arrayDim = arrayDim | |
|
|
707 | 672 | self.dsList = dsList |
|
|
708 | 673 | self.tableDim = numpy.array(tableList, dtype = dtype0) |
|
|
709 | 674 | self.blockIndex = 0 |
|
|
710 | ||
|
|
711 | 675 | timeTuple = time.localtime(dataOut.utctime) |
|
|
712 | 676 | self.currentDay = timeTuple.tm_yday |
|
|
713 | return 1 | |
|
|
714 | 677 | |
|
|
715 | 678 | def putMetadata(self): |
|
|
716 | 679 | |
|
|
717 | 680 | fp = self.createMetadataFile() |
|
|
718 | 681 | self.writeMetadata(fp) |
|
|
719 | 682 | fp.close() |
|
|
720 | 683 | return |
|
|
721 | 684 | |
|
|
722 | 685 | def createMetadataFile(self): |
|
|
723 | 686 | ext = self.ext |
|
|
724 | 687 | path = self.path |
|
|
725 | 688 | setFile = self.setFile |
|
|
726 | 689 | |
|
|
727 | 690 | timeTuple = time.localtime(self.dataOut.utctime) |
|
|
728 | 691 | |
|
|
729 | 692 | subfolder = '' |
|
|
730 | 693 | fullpath = os.path.join( path, subfolder ) |
|
|
731 | 694 | |
|
|
732 | 695 | if not( os.path.exists(fullpath) ): |
|
|
733 | 696 | os.mkdir(fullpath) |
|
|
734 | 697 | setFile = -1 #inicializo mi contador de seteo |
|
|
735 | 698 | |
|
|
736 | 699 | subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday) |
|
|
737 | 700 | fullpath = os.path.join( path, subfolder ) |
|
|
738 | 701 | |
|
|
739 | 702 | if not( os.path.exists(fullpath) ): |
|
|
740 | 703 | os.mkdir(fullpath) |
|
|
741 | 704 | setFile = -1 #inicializo mi contador de seteo |
|
|
742 | 705 | |
|
|
743 | 706 | else: |
|
|
744 | 707 | filesList = os.listdir( fullpath ) |
|
|
745 | 708 | filesList = sorted( filesList, key=str.lower ) |
|
|
746 | 709 | if len( filesList ) > 0: |
|
|
747 |
filesList = [k for k in filesList if |
|
|
|
710 | filesList = [k for k in filesList if k.startswith(self.metaoptchar)] | |
|
|
748 | 711 | filen = filesList[-1] |
|
|
749 | 712 | # el filename debera tener el siguiente formato |
|
|
750 | 713 | # 0 1234 567 89A BCDE (hex) |
|
|
751 | 714 | # x YYYY DDD SSS .ext |
|
|
752 | 715 | if isNumber( filen[8:11] ): |
|
|
753 | 716 | setFile = int( filen[8:11] ) #inicializo mi contador de seteo al seteo del ultimo file |
|
|
754 | 717 | else: |
|
|
755 | 718 | setFile = -1 |
|
|
756 | 719 | else: |
|
|
757 | 720 | setFile = -1 #inicializo mi contador de seteo |
|
|
758 | 721 | |
|
|
759 | 722 | if self.setType is None: |
|
|
760 | 723 | setFile += 1 |
|
|
761 | 724 | file = '%s%4.4d%3.3d%03d%s' % (self.metaoptchar, |
|
|
762 | 725 | timeTuple.tm_year, |
|
|
763 | 726 | timeTuple.tm_yday, |
|
|
764 | 727 | setFile, |
|
|
765 | 728 | ext ) |
|
|
766 | 729 | else: |
|
|
767 | 730 | setFile = timeTuple.tm_hour*60+timeTuple.tm_min |
|
|
768 | 731 | file = '%s%4.4d%3.3d%04d%s' % (self.metaoptchar, |
|
|
769 | 732 | timeTuple.tm_year, |
|
|
770 | 733 | timeTuple.tm_yday, |
|
|
771 | 734 | setFile, |
|
|
772 | 735 | ext ) |
|
|
773 | 736 | |
|
|
774 | 737 | filename = os.path.join( path, subfolder, file ) |
|
|
775 | 738 | self.metaFile = file |
|
|
776 | 739 | #Setting HDF5 File |
|
|
777 | 740 | fp = h5py.File(filename,'w') |
|
|
778 | 741 | |
|
|
779 | 742 | return fp |
|
|
780 | 743 | |
|
|
781 | 744 | def writeMetadata(self, fp): |
|
|
782 | 745 | |
|
|
783 | 746 | grp = fp.create_group("Metadata") |
|
|
784 | 747 | grp.create_dataset('array dimensions', data = self.tableDim, dtype = self.dtype) |
|
|
785 | 748 | |
|
|
786 | 749 | for i in range(len(self.metadataList)): |
|
|
787 | 750 | grp.create_dataset(self.metadataList[i], data=getattr(self.dataOut, self.metadataList[i])) |
|
|
788 | 751 | return |
|
|
789 | 752 | |
|
|
790 | 753 | def timeFlag(self): |
|
|
791 | 754 | currentTime = self.dataOut.utctime |
|
|
792 | 755 | |
|
|
793 | 756 | if self.lastTime is None: |
|
|
794 | 757 | self.lastTime = currentTime |
|
|
795 | 758 | |
|
|
796 | 759 | #Day |
|
|
797 | 760 | timeTuple = time.localtime(currentTime) |
|
|
798 | 761 | dataDay = timeTuple.tm_yday |
|
|
799 | 762 | |
|
|
800 | 763 | #Time |
|
|
801 | 764 | timeDiff = currentTime - self.lastTime |
|
|
802 | 765 | |
|
|
803 | 766 | #Si el dia es diferente o si la diferencia entre un dato y otro supera la hora |
|
|
804 | 767 | if dataDay != self.currentDay: |
|
|
805 | 768 | self.currentDay = dataDay |
|
|
806 | 769 | return True |
|
|
807 | 770 | elif timeDiff > 3*60*60: |
|
|
808 | 771 | self.lastTime = currentTime |
|
|
809 | 772 | return True |
|
|
810 | 773 | else: |
|
|
811 | 774 | self.lastTime = currentTime |
|
|
812 | 775 | return False |
|
|
813 | 776 | |
|
|
814 | 777 | def setNextFile(self): |
|
|
815 | 778 | |
|
|
816 | 779 | ext = self.ext |
|
|
817 | 780 | path = self.path |
|
|
818 | 781 | setFile = self.setFile |
|
|
819 | 782 | mode = self.mode |
|
|
820 | 783 | |
|
|
821 | 784 | timeTuple = time.localtime(self.dataOut.utctime) |
|
|
822 | 785 | subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday) |
|
|
823 | 786 | |
|
|
824 | 787 | fullpath = os.path.join( path, subfolder ) |
|
|
825 | 788 | |
|
|
826 | 789 | if os.path.exists(fullpath): |
|
|
827 | 790 | filesList = os.listdir( fullpath ) |
|
|
828 |
filesList = [k for k in filesList if |
|
|
|
791 | filesList = [k for k in filesList if k.startswith(self.optchar)] | |
|
|
829 | 792 | if len( filesList ) > 0: |
|
|
830 | 793 | filesList = sorted( filesList, key=str.lower ) |
|
|
831 | 794 | filen = filesList[-1] |
|
|
832 | 795 | # el filename debera tener el siguiente formato |
|
|
833 | 796 | # 0 1234 567 89A BCDE (hex) |
|
|
834 | 797 | # x YYYY DDD SSS .ext |
|
|
835 | 798 | if isNumber( filen[8:11] ): |
|
|
836 | 799 | setFile = int( filen[8:11] ) #inicializo mi contador de seteo al seteo del ultimo file |
|
|
837 | 800 | else: |
|
|
838 | 801 | setFile = -1 |
|
|
839 | 802 | else: |
|
|
840 | 803 | setFile = -1 #inicializo mi contador de seteo |
|
|
841 | 804 | else: |
|
|
842 | 805 | os.makedirs(fullpath) |
|
|
843 | 806 | setFile = -1 #inicializo mi contador de seteo |
|
|
844 | 807 | |
|
|
845 |
if |
|
|
|
808 | if self.setType is None: | |
|
|
846 | 809 | setFile += 1 |
|
|
847 |
file = '%s%4.4d%3.3d%03d%s' % (self. |
|
|
|
810 | file = '%s%4.4d%3.3d%03d%s' % (self.optchar, | |
|
|
848 | 811 | timeTuple.tm_year, |
|
|
849 | 812 | timeTuple.tm_yday, |
|
|
850 | 813 | setFile, |
|
|
851 | 814 | ext ) |
|
|
852 | 815 | else: |
|
|
853 | 816 | setFile = timeTuple.tm_hour*60+timeTuple.tm_min |
|
|
854 |
file = '%s%4.4d%3.3d%04d%s' % (self. |
|
|
|
817 | file = '%s%4.4d%3.3d%04d%s' % (self.optchar, | |
|
|
855 | 818 | timeTuple.tm_year, |
|
|
856 | 819 | timeTuple.tm_yday, |
|
|
857 | 820 | setFile, |
|
|
858 | 821 | ext ) |
|
|
859 | 822 | |
|
|
860 | 823 | filename = os.path.join( path, subfolder, file ) |
|
|
861 | 824 | |
|
|
862 | 825 | #Setting HDF5 File |
|
|
863 | 826 | fp = h5py.File(filename,'w') |
|
|
864 | 827 | #write metadata |
|
|
865 | 828 | self.writeMetadata(fp) |
|
|
866 | 829 | #Write data |
|
|
867 | 830 | grp = fp.create_group("Data") |
|
|
868 | # grp.attrs['metadata'] = self.metaFile | |
|
|
869 | ||
|
|
870 | # grp.attrs['blocksPerFile'] = 0 | |
|
|
871 | 831 | ds = [] |
|
|
872 | 832 | data = [] |
|
|
873 | 833 | dsList = self.dsList |
|
|
874 | 834 | i = 0 |
|
|
875 | 835 | while i < len(dsList): |
|
|
876 | 836 | dsInfo = dsList[i] |
|
|
877 | 837 | #One-dimension data |
|
|
878 | 838 | if dsInfo['mode'] == 0: |
|
|
879 | # ds0 = grp.create_dataset(self.dataList[i], (1,1), maxshape=(1,self.blocksPerFile) , chunks = True, dtype='S20') | |
|
|
880 | 839 | ds0 = grp.create_dataset(dsInfo['variable'], (1,1), maxshape=(1,self.blocksPerFile) , chunks = True, dtype=numpy.float64) |
|
|
881 | 840 | ds.append(ds0) |
|
|
882 | 841 | data.append([]) |
|
|
883 | 842 | i += 1 |
|
|
884 | 843 | continue |
|
|
885 | # nDimsForDs.append(nDims[i]) | |
|
|
886 | 844 | |
|
|
887 | 845 | elif dsInfo['mode'] == 2: |
|
|
888 | 846 | grp0 = grp.create_group(dsInfo['variable']) |
|
|
889 | 847 | ds0 = grp0.create_dataset(dsInfo['dsName'], (1,dsInfo['shape']), data = numpy.zeros((1,dsInfo['shape'])) , maxshape=(None,dsInfo['shape']), chunks=True) |
|
|
890 | 848 | ds.append(ds0) |
|
|
891 | 849 | data.append([]) |
|
|
892 | 850 | i += 1 |
|
|
893 | 851 | continue |
|
|
894 | 852 | |
|
|
895 | 853 | elif dsInfo['mode'] == 1: |
|
|
896 | 854 | grp0 = grp.create_group(dsInfo['variable']) |
|
|
897 | 855 | |
|
|
898 | 856 | for j in range(dsInfo['dsNumber']): |
|
|
899 | 857 | dsInfo = dsList[i] |
|
|
900 | 858 | tableName = dsInfo['dsName'] |
|
|
901 | 859 | |
|
|
902 | 860 | |
|
|
903 | 861 | if dsInfo['nDim'] == 3: |
|
|
904 | 862 | shape = dsInfo['shape'].astype(int) |
|
|
905 | 863 | ds0 = grp0.create_dataset(tableName, (shape[0],shape[1],1) , data = numpy.zeros((shape[0],shape[1],1)), maxshape = (None,shape[1],None), chunks=True) |
|
|
906 | 864 | else: |
|
|
907 | 865 | shape = int(dsInfo['shape']) |
|
|
908 | 866 | ds0 = grp0.create_dataset(tableName, (1,shape), data = numpy.zeros((1,shape)) , maxshape=(None,shape), chunks=True) |
|
|
909 | 867 | |
|
|
910 | 868 | ds.append(ds0) |
|
|
911 | 869 | data.append([]) |
|
|
912 | 870 | i += 1 |
|
|
913 | # nDimsForDs.append(nDims[i]) | |
|
|
914 | 871 | |
|
|
915 | 872 | fp.flush() |
|
|
916 | 873 | fp.close() |
|
|
917 | 874 | |
|
|
918 | # self.nDatas = nDatas | |
|
|
919 | # self.nDims = nDims | |
|
|
920 | # self.nDimsForDs = nDimsForDs | |
|
|
921 | #Saving variables | |
|
|
922 | print('Writing the file: %s'%filename) | |
|
|
875 | log.log('creating file: {}'.format(filename), 'Writing') | |
|
|
923 | 876 | self.filename = filename |
|
|
924 | # self.fp = fp | |
|
|
925 | # self.grp = grp | |
|
|
926 | # self.grp.attrs.modify('nRecords', 1) | |
|
|
927 | 877 | self.ds = ds |
|
|
928 | 878 | self.data = data |
|
|
929 | # self.setFile = setFile | |
|
|
930 | 879 | self.firsttime = True |
|
|
931 | 880 | self.blockIndex = 0 |
|
|
932 | 881 | return |
|
|
933 | 882 | |
|
|
934 | 883 | def putData(self): |
|
|
935 | 884 | |
|
|
936 | 885 | if self.blockIndex == self.blocksPerFile or self.timeFlag(): |
|
|
937 | 886 | self.setNextFile() |
|
|
938 | 887 | |
|
|
939 | # if not self.firsttime: | |
|
|
940 | 888 | self.readBlock() |
|
|
941 | 889 | self.setBlock() #Prepare data to be written |
|
|
942 | 890 | self.writeBlock() #Write data |
|
|
943 | 891 | |
|
|
944 | 892 | return |
|
|
945 | 893 | |
|
|
946 | 894 | def readBlock(self): |
|
|
947 | 895 | |
|
|
948 | 896 | ''' |
|
|
949 | 897 | data Array configured |
|
|
950 | 898 | |
|
|
951 | 899 | |
|
|
952 | 900 | self.data |
|
|
953 | 901 | ''' |
|
|
954 | 902 | dsList = self.dsList |
|
|
955 | 903 | ds = self.ds |
|
|
956 | 904 | #Setting HDF5 File |
|
|
957 | 905 | fp = h5py.File(self.filename,'r+') |
|
|
958 | 906 | grp = fp["Data"] |
|
|
959 | 907 | ind = 0 |
|
|
960 | 908 | |
|
|
961 | # grp.attrs['blocksPerFile'] = 0 | |
|
|
962 | 909 | while ind < len(dsList): |
|
|
963 | 910 | dsInfo = dsList[ind] |
|
|
964 | 911 | |
|
|
965 | 912 | if dsInfo['mode'] == 0: |
|
|
966 | 913 | ds0 = grp[dsInfo['variable']] |
|
|
967 | 914 | ds[ind] = ds0 |
|
|
968 | 915 | ind += 1 |
|
|
969 | 916 | else: |
|
|
970 | 917 | |
|
|
971 | 918 | grp0 = grp[dsInfo['variable']] |
|
|
972 | 919 | |
|
|
973 | 920 | for j in range(dsInfo['dsNumber']): |
|
|
974 | 921 | dsInfo = dsList[ind] |
|
|
975 | 922 | ds0 = grp0[dsInfo['dsName']] |
|
|
976 | 923 | ds[ind] = ds0 |
|
|
977 | 924 | ind += 1 |
|
|
978 | 925 | |
|
|
979 | 926 | self.fp = fp |
|
|
980 | 927 | self.grp = grp |
|
|
981 | 928 | self.ds = ds |
|
|
982 | 929 | |
|
|
983 | 930 | return |
|
|
984 | 931 | |
|
|
985 | 932 | def setBlock(self): |
|
|
986 | 933 | ''' |
|
|
987 | 934 | data Array configured |
|
|
988 | 935 | |
|
|
989 | 936 | |
|
|
990 | 937 | self.data |
|
|
991 | 938 | ''' |
|
|
992 | 939 | #Creating Arrays |
|
|
993 | 940 | dsList = self.dsList |
|
|
994 | 941 | data = self.data |
|
|
995 | 942 | ind = 0 |
|
|
996 | 943 | |
|
|
997 | 944 | while ind < len(dsList): |
|
|
998 | 945 | dsInfo = dsList[ind] |
|
|
999 | 946 | dataAux = getattr(self.dataOut, dsInfo['variable']) |
|
|
1000 | 947 | |
|
|
1001 | 948 | mode = dsInfo['mode'] |
|
|
1002 | 949 | nDim = dsInfo['nDim'] |
|
|
1003 | 950 | |
|
|
1004 | 951 | if mode == 0 or mode == 2 or nDim == 1: |
|
|
1005 | 952 | data[ind] = dataAux |
|
|
1006 | 953 | ind += 1 |
|
|
1007 | # elif nDim == 1: | |
|
|
1008 | # data[ind] = numpy.reshape(dataAux,(numpy.size(dataAux),1)) | |
|
|
1009 | # ind += 1 | |
|
|
954 | # elif nDim == 1: | |
|
|
955 | # data[ind] = numpy.reshape(dataAux,(numpy.size(dataAux),1)) | |
|
|
956 | # ind += 1 | |
|
|
1010 | 957 | elif nDim == 2: |
|
|
1011 | 958 | for j in range(dsInfo['dsNumber']): |
|
|
1012 | 959 | data[ind] = dataAux[j,:] |
|
|
1013 | 960 | ind += 1 |
|
|
1014 | 961 | elif nDim == 3: |
|
|
1015 | 962 | for j in range(dsInfo['dsNumber']): |
|
|
1016 | 963 | data[ind] = dataAux[:,j,:] |
|
|
1017 | 964 | ind += 1 |
|
|
1018 | 965 | |
|
|
1019 | 966 | self.data = data |
|
|
1020 | 967 | return |
|
|
1021 | 968 | |
|
|
1022 | 969 | def writeBlock(self): |
|
|
1023 | 970 | ''' |
|
|
1024 | 971 | Saves the block in the HDF5 file |
|
|
1025 | 972 | ''' |
|
|
1026 | 973 | dsList = self.dsList |
|
|
1027 | 974 | |
|
|
1028 | 975 | for i in range(len(self.ds)): |
|
|
1029 | 976 | dsInfo = dsList[i] |
|
|
1030 | 977 | nDim = dsInfo['nDim'] |
|
|
1031 | 978 | mode = dsInfo['mode'] |
|
|
1032 | 979 | |
|
|
1033 | 980 | # First time |
|
|
1034 | 981 | if self.firsttime: |
|
|
1035 | # self.ds[i].resize(self.data[i].shape) | |
|
|
1036 | # self.ds[i][self.blockIndex,:] = self.data[i] | |
|
|
1037 | 982 | if type(self.data[i]) == numpy.ndarray: |
|
|
1038 | 983 | |
|
|
1039 | 984 | if nDim == 3: |
|
|
1040 | 985 | self.data[i] = self.data[i].reshape((self.data[i].shape[0],self.data[i].shape[1],1)) |
|
|
1041 | 986 | self.ds[i].resize(self.data[i].shape) |
|
|
1042 | 987 | if mode == 2: |
|
|
1043 | 988 | self.ds[i].resize(self.data[i].shape) |
|
|
1044 | 989 | self.ds[i][:] = self.data[i] |
|
|
1045 | 990 | else: |
|
|
1046 | 991 | |
|
|
1047 | 992 | # From second time |
|
|
1048 | 993 | # Meteors! |
|
|
1049 | 994 | if mode == 2: |
|
|
1050 | 995 | dataShape = self.data[i].shape |
|
|
1051 | 996 | dsShape = self.ds[i].shape |
|
|
1052 | 997 | self.ds[i].resize((self.ds[i].shape[0] + dataShape[0],self.ds[i].shape[1])) |
|
|
1053 | 998 | self.ds[i][dsShape[0]:,:] = self.data[i] |
|
|
1054 | 999 | # No dimension |
|
|
1055 | 1000 | elif mode == 0: |
|
|
1056 | 1001 | self.ds[i].resize((self.ds[i].shape[0], self.ds[i].shape[1] + 1)) |
|
|
1057 | 1002 | self.ds[i][0,-1] = self.data[i] |
|
|
1058 | 1003 | # One dimension |
|
|
1059 | 1004 | elif nDim == 1: |
|
|
1060 | 1005 | self.ds[i].resize((self.ds[i].shape[0] + 1, self.ds[i].shape[1])) |
|
|
1061 | 1006 | self.ds[i][-1,:] = self.data[i] |
|
|
1062 | 1007 | # Two dimension |
|
|
1063 | 1008 | elif nDim == 2: |
|
|
1064 | 1009 | self.ds[i].resize((self.ds[i].shape[0] + 1,self.ds[i].shape[1])) |
|
|
1065 | 1010 | self.ds[i][self.blockIndex,:] = self.data[i] |
|
|
1066 | 1011 | # Three dimensions |
|
|
1067 | 1012 | elif nDim == 3: |
|
|
1068 | 1013 | self.ds[i].resize((self.ds[i].shape[0],self.ds[i].shape[1],self.ds[i].shape[2]+1)) |
|
|
1069 | 1014 | self.ds[i][:,:,-1] = self.data[i] |
|
|
1070 | 1015 | |
|
|
1071 | 1016 | self.firsttime = False |
|
|
1072 | 1017 | self.blockIndex += 1 |
|
|
1073 | 1018 | |
|
|
1074 | 1019 | #Close to save changes |
|
|
1075 | 1020 | self.fp.flush() |
|
|
1076 | 1021 | self.fp.close() |
|
|
1077 | 1022 | return |
|
|
1078 | 1023 | |
|
|
1079 |
def run(self, dataOut, path, blocksPerFile=10, metadataList=None, dataList=None, mode=None, |
|
|
|
1024 | def run(self, dataOut, path, blocksPerFile=10, metadataList=None, dataList=None, mode=None, setType=None): | |
|
|
1080 | 1025 | |
|
|
1081 | 1026 | if not(self.isConfig): |
|
|
1082 |
|
|
|
|
1083 |
|
|
|
|
1084 | ||
|
|
1085 | if not(flagdata): | |
|
|
1086 | return | |
|
|
1027 | self.setup(dataOut, path=path, blocksPerFile=blocksPerFile, | |
|
|
1028 | metadataList=metadataList, dataList=dataList, mode=mode, | |
|
|
1029 | setType=setType) | |
|
|
1087 | 1030 | |
|
|
1088 | 1031 | self.isConfig = True |
|
|
1089 | 1032 | self.setNextFile() |
|
|
1090 | 1033 | |
|
|
1091 | 1034 | self.putData() |
|
|
1092 | 1035 | return |
|
|
1093 | 1036 | No newline at end of file |
| @@ -1,380 +1,382 | |||
|
|
1 | 1 | ''' |
|
|
2 | 2 | Updated for multiprocessing |
|
|
3 | 3 | Author : Sergio Cortez |
|
|
4 | 4 | Jan 2018 |
|
|
5 | 5 | Abstract: |
|
|
6 | 6 | Base class for processing units and operations. A decorator provides multiprocessing features and interconnect the processes created. |
|
|
7 | 7 | The argument (kwargs) sent from the controller is parsed and filtered via the decorator for each processing unit or operation instantiated. |
|
|
8 | 8 | The decorator handle also the methods inside the processing unit to be called from the main script (not as operations) (OPERATION -> type ='self'). |
|
|
9 | 9 | |
|
|
10 | 10 | Based on: |
|
|
11 | 11 | $Author: murco $ |
|
|
12 | 12 | $Id: jroproc_base.py 1 2012-11-12 18:56:07Z murco $ |
|
|
13 | 13 | ''' |
|
|
14 | 14 | |
|
|
15 | 15 | import inspect |
|
|
16 | 16 | import zmq |
|
|
17 | 17 | import time |
|
|
18 | 18 | import pickle |
|
|
19 | 19 | import os |
|
|
20 | 20 | from multiprocessing import Process |
|
|
21 | 21 | from zmq.utils.monitor import recv_monitor_message |
|
|
22 | 22 | |
|
|
23 | 23 | from schainpy.utils import log |
|
|
24 | 24 | |
|
|
25 | 25 | |
|
|
26 | 26 | class ProcessingUnit(object): |
|
|
27 | 27 | |
|
|
28 | 28 | """ |
|
|
29 | 29 | Update - Jan 2018 - MULTIPROCESSING |
|
|
30 | 30 | All the "call" methods present in the previous base were removed. |
|
|
31 | 31 | The majority of operations are independant processes, thus |
|
|
32 | 32 | the decorator is in charge of communicate the operation processes |
|
|
33 | 33 | with the proccessing unit via IPC. |
|
|
34 | 34 | |
|
|
35 | 35 | The constructor does not receive any argument. The remaining methods |
|
|
36 | 36 | are related with the operations to execute. |
|
|
37 | 37 | |
|
|
38 | 38 | |
|
|
39 | 39 | """ |
|
|
40 | 40 | |
|
|
41 | 41 | def __init__(self): |
|
|
42 | 42 | |
|
|
43 | 43 | self.dataIn = None |
|
|
44 | 44 | self.dataOut = None |
|
|
45 | 45 | self.isConfig = False |
|
|
46 | 46 | self.operations = [] |
|
|
47 | 47 | self.plots = [] |
|
|
48 | 48 | |
|
|
49 | 49 | def getAllowedArgs(self): |
|
|
50 | 50 | if hasattr(self, '__attrs__'): |
|
|
51 | 51 | return self.__attrs__ |
|
|
52 | 52 | else: |
|
|
53 | 53 | return inspect.getargspec(self.run).args |
|
|
54 | 54 | |
|
|
55 | 55 | def addOperation(self, conf, operation): |
|
|
56 | 56 | """ |
|
|
57 | 57 | This method is used in the controller, and update the dictionary containing the operations to execute. The dict |
|
|
58 | 58 | posses the id of the operation process (IPC purposes) |
|
|
59 | 59 | |
|
|
60 | 60 | Agrega un objeto del tipo "Operation" (opObj) a la lista de objetos "self.objectList" y retorna el |
|
|
61 | 61 | identificador asociado a este objeto. |
|
|
62 | 62 | |
|
|
63 | 63 | Input: |
|
|
64 | 64 | |
|
|
65 | 65 | object : objeto de la clase "Operation" |
|
|
66 | 66 | |
|
|
67 | 67 | Return: |
|
|
68 | 68 | |
|
|
69 | 69 | objId : identificador del objeto, necesario para comunicar con master(procUnit) |
|
|
70 | 70 | """ |
|
|
71 | 71 | |
|
|
72 | 72 | self.operations.append( |
|
|
73 | 73 | (operation, conf.type, conf.id, conf.getKwargs())) |
|
|
74 | 74 | |
|
|
75 | 75 | if 'plot' in self.name.lower(): |
|
|
76 | 76 | self.plots.append(operation.CODE) |
|
|
77 | 77 | |
|
|
78 | 78 | def getOperationObj(self, objId): |
|
|
79 | 79 | |
|
|
80 | 80 | if objId not in list(self.operations.keys()): |
|
|
81 | 81 | return None |
|
|
82 | 82 | |
|
|
83 | 83 | return self.operations[objId] |
|
|
84 | 84 | |
|
|
85 | 85 | def operation(self, **kwargs): |
|
|
86 | 86 | """ |
|
|
87 | 87 | Operacion directa sobre la data (dataOut.data). Es necesario actualizar los valores de los |
|
|
88 | 88 | atributos del objeto dataOut |
|
|
89 | 89 | |
|
|
90 | 90 | Input: |
|
|
91 | 91 | |
|
|
92 | 92 | **kwargs : Diccionario de argumentos de la funcion a ejecutar |
|
|
93 | 93 | """ |
|
|
94 | 94 | |
|
|
95 | 95 | raise NotImplementedError |
|
|
96 | 96 | |
|
|
97 | 97 | def setup(self): |
|
|
98 | 98 | |
|
|
99 | 99 | raise NotImplementedError |
|
|
100 | 100 | |
|
|
101 | 101 | def run(self): |
|
|
102 | 102 | |
|
|
103 | 103 | raise NotImplementedError |
|
|
104 | 104 | |
|
|
105 | 105 | def close(self): |
|
|
106 | 106 | |
|
|
107 | 107 | return |
|
|
108 | 108 | |
|
|
109 | 109 | |
|
|
110 | 110 | class Operation(object): |
|
|
111 | 111 | |
|
|
112 | 112 | """ |
|
|
113 | 113 | Update - Jan 2018 - MULTIPROCESSING |
|
|
114 | 114 | |
|
|
115 | 115 | Most of the methods remained the same. The decorator parse the arguments and executed the run() method for each process. |
|
|
116 | 116 | The constructor doe snot receive any argument, neither the baseclass. |
|
|
117 | 117 | |
|
|
118 | 118 | |
|
|
119 | 119 | Clase base para definir las operaciones adicionales que se pueden agregar a la clase ProcessingUnit |
|
|
120 | 120 | y necesiten acumular informacion previa de los datos a procesar. De preferencia usar un buffer de |
|
|
121 | 121 | acumulacion dentro de esta clase |
|
|
122 | 122 | |
|
|
123 | 123 | Ejemplo: Integraciones coherentes, necesita la informacion previa de los n perfiles anteriores (bufffer) |
|
|
124 | 124 | |
|
|
125 | 125 | """ |
|
|
126 | 126 | |
|
|
127 | 127 | def __init__(self): |
|
|
128 | 128 | |
|
|
129 | 129 | self.id = None |
|
|
130 | 130 | self.isConfig = False |
|
|
131 | 131 | |
|
|
132 | 132 | if not hasattr(self, 'name'): |
|
|
133 | 133 | self.name = self.__class__.__name__ |
|
|
134 | 134 | |
|
|
135 | 135 | def getAllowedArgs(self): |
|
|
136 | 136 | if hasattr(self, '__attrs__'): |
|
|
137 | 137 | return self.__attrs__ |
|
|
138 | 138 | else: |
|
|
139 | 139 | return inspect.getargspec(self.run).args |
|
|
140 | 140 | |
|
|
141 | 141 | def setup(self): |
|
|
142 | 142 | |
|
|
143 | 143 | self.isConfig = True |
|
|
144 | 144 | |
|
|
145 | 145 | raise NotImplementedError |
|
|
146 | 146 | |
|
|
147 | 147 | def run(self, dataIn, **kwargs): |
|
|
148 | 148 | """ |
|
|
149 | 149 | Realiza las operaciones necesarias sobre la dataIn.data y actualiza los |
|
|
150 | 150 | atributos del objeto dataIn. |
|
|
151 | 151 | |
|
|
152 | 152 | Input: |
|
|
153 | 153 | |
|
|
154 | 154 | dataIn : objeto del tipo JROData |
|
|
155 | 155 | |
|
|
156 | 156 | Return: |
|
|
157 | 157 | |
|
|
158 | 158 | None |
|
|
159 | 159 | |
|
|
160 | 160 | Affected: |
|
|
161 | 161 | __buffer : buffer de recepcion de datos. |
|
|
162 | 162 | |
|
|
163 | 163 | """ |
|
|
164 | 164 | if not self.isConfig: |
|
|
165 | 165 | self.setup(**kwargs) |
|
|
166 | 166 | |
|
|
167 | 167 | raise NotImplementedError |
|
|
168 | 168 | |
|
|
169 | 169 | def close(self): |
|
|
170 | 170 | |
|
|
171 | 171 | return |
|
|
172 | 172 | |
|
|
173 | 173 | |
|
|
174 | 174 | def MPDecorator(BaseClass): |
|
|
175 | 175 | """ |
|
|
176 | 176 | Multiprocessing class decorator |
|
|
177 | 177 | |
|
|
178 | 178 | This function add multiprocessing features to a BaseClass. Also, it handle |
|
|
179 | 179 | the communication beetween processes (readers, procUnits and operations). |
|
|
180 | 180 | """ |
|
|
181 | 181 | |
|
|
182 | 182 | class MPClass(BaseClass, Process): |
|
|
183 | 183 | |
|
|
184 | 184 | def __init__(self, *args, **kwargs): |
|
|
185 | 185 | super(MPClass, self).__init__() |
|
|
186 | 186 | Process.__init__(self) |
|
|
187 | 187 | self.operationKwargs = {} |
|
|
188 | 188 | self.args = args |
|
|
189 | 189 | self.kwargs = kwargs |
|
|
190 | 190 | self.sender = None |
|
|
191 | 191 | self.receiver = None |
|
|
192 | 192 | self.name = BaseClass.__name__ |
|
|
193 | if 'plot' in self.name.lower(): | |
|
|
194 | self.name = '{}{}'.format(self.CODE.upper(), 'Plot') | |
|
|
193 | 195 | self.start_time = time.time() |
|
|
194 | 196 | |
|
|
195 | 197 | if len(self.args) is 3: |
|
|
196 | 198 | self.typeProc = "ProcUnit" |
|
|
197 | 199 | self.id = args[0] |
|
|
198 | 200 | self.inputId = args[1] |
|
|
199 | 201 | self.project_id = args[2] |
|
|
200 | 202 | elif len(self.args) is 2: |
|
|
201 | 203 | self.id = args[0] |
|
|
202 | 204 | self.inputId = args[0] |
|
|
203 | 205 | self.project_id = args[1] |
|
|
204 | 206 | self.typeProc = "Operation" |
|
|
205 | 207 | |
|
|
206 | 208 | def subscribe(self): |
|
|
207 | 209 | ''' |
|
|
208 | 210 | This function create a socket to receive objects from the |
|
|
209 | 211 | topic `inputId`. |
|
|
210 | 212 | ''' |
|
|
211 | 213 | |
|
|
212 | 214 | c = zmq.Context() |
|
|
213 | 215 | self.receiver = c.socket(zmq.SUB) |
|
|
214 | 216 | self.receiver.connect( |
|
|
215 | 217 | 'ipc:///tmp/schain/{}_pub'.format(self.project_id)) |
|
|
216 | 218 | self.receiver.setsockopt(zmq.SUBSCRIBE, self.inputId.encode()) |
|
|
217 | 219 | |
|
|
218 | 220 | def listen(self): |
|
|
219 | 221 | ''' |
|
|
220 | 222 | This function waits for objects and deserialize using pickle |
|
|
221 | 223 | ''' |
|
|
222 | 224 | |
|
|
223 | 225 | data = pickle.loads(self.receiver.recv_multipart()[1]) |
|
|
224 | 226 | |
|
|
225 | 227 | return data |
|
|
226 | 228 | |
|
|
227 | 229 | def set_publisher(self): |
|
|
228 | 230 | ''' |
|
|
229 | 231 | This function create a socket for publishing purposes. |
|
|
230 | 232 | ''' |
|
|
231 | 233 | |
|
|
232 | 234 | time.sleep(1) |
|
|
233 | 235 | c = zmq.Context() |
|
|
234 | 236 | self.sender = c.socket(zmq.PUB) |
|
|
235 | 237 | self.sender.connect( |
|
|
236 | 238 | 'ipc:///tmp/schain/{}_sub'.format(self.project_id)) |
|
|
237 | 239 | |
|
|
238 | 240 | def publish(self, data, id): |
|
|
239 | 241 | ''' |
|
|
240 | 242 | This function publish an object, to a specific topic. |
|
|
241 | 243 | ''' |
|
|
242 | 244 | self.sender.send_multipart([str(id).encode(), pickle.dumps(data)]) |
|
|
243 | 245 | |
|
|
244 | 246 | def runReader(self): |
|
|
245 | 247 | ''' |
|
|
246 | 248 | Run fuction for read units |
|
|
247 | 249 | ''' |
|
|
248 | 250 | while True: |
|
|
249 | 251 | |
|
|
250 | 252 | BaseClass.run(self, **self.kwargs) |
|
|
251 | 253 | |
|
|
252 | 254 | for op, optype, opId, kwargs in self.operations: |
|
|
253 | 255 | if optype == 'self': |
|
|
254 | 256 | op(**kwargs) |
|
|
255 | 257 | elif optype == 'other': |
|
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256 | 258 | self.dataOut = op.run(self.dataOut, **self.kwargs) |
|
|
257 | 259 | elif optype == 'external': |
|
|
258 | 260 | self.publish(self.dataOut, opId) |
|
|
259 | 261 | |
|
|
260 |
if self.dataOut.flagNoData and self.dataOut.error |
|
|
|
262 | if self.dataOut.flagNoData and not self.dataOut.error: | |
|
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261 | 263 | continue |
|
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262 | 264 | |
|
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263 | 265 | self.publish(self.dataOut, self.id) |
|
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264 | 266 | |
|
|
265 | 267 | if self.dataOut.error: |
|
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266 |
|
|
|
|
267 | log.error(self.dataOut.error[1], self.name) | |
|
|
268 | if self.dataOut.error[0] == 1: | |
|
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269 | log.success(self.dataOut.error[1], self.name) | |
|
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268 | log.error(self.dataOut.error, self.name) | |
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270 | 269 | # self.sender.send_multipart([str(self.project_id).encode(), 'end'.encode()]) |
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271 | 270 | break |
|
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272 | 271 | |
|
|
273 | 272 | time.sleep(1) |
|
|
274 | 273 | |
|
|
275 | 274 | def runProc(self): |
|
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276 | 275 | ''' |
|
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277 | 276 | Run function for proccessing units |
|
|
278 | 277 | ''' |
|
|
279 | 278 | |
|
|
280 | 279 | while True: |
|
|
281 | 280 | self.dataIn = self.listen() |
|
|
282 | 281 | |
|
|
283 | 282 | if self.dataIn.flagNoData and self.dataIn.error is None: |
|
|
284 | 283 | continue |
|
|
285 | 284 | |
|
|
286 | 285 | BaseClass.run(self, **self.kwargs) |
|
|
287 | 286 | |
|
|
288 |
if self.data |
|
|
|
289 | continue | |
|
|
287 | if self.dataIn.error: | |
|
|
288 | self.dataOut.error = self.dataIn.error | |
|
|
289 | self.dataOut.flagNoData = True | |
|
|
290 | 290 | |
|
|
291 | 291 | for op, optype, opId, kwargs in self.operations: |
|
|
292 | 292 | if optype == 'self': |
|
|
293 | 293 | op(**kwargs) |
|
|
294 | 294 | elif optype == 'other': |
|
|
295 | 295 | self.dataOut = op.run(self.dataOut, **kwargs) |
|
|
296 | 296 | elif optype == 'external': |
|
|
297 |
|
|
|
|
297 | if not self.dataOut.flagNoData or self.dataOut.error: | |
|
|
298 | self.publish(self.dataOut, opId) | |
|
|
298 | 299 | |
|
|
299 | 300 | self.publish(self.dataOut, self.id) |
|
|
300 | 301 | if self.dataIn.error: |
|
|
301 | 302 | break |
|
|
302 | 303 | |
|
|
303 | 304 | time.sleep(1) |
|
|
304 | 305 | |
|
|
305 | 306 | def runOp(self): |
|
|
306 | 307 | ''' |
|
|
307 | 308 | Run function for external operations (this operations just receive data |
|
|
308 | 309 | ex: plots, writers, publishers) |
|
|
309 | 310 | ''' |
|
|
310 | 311 | |
|
|
311 | 312 | while True: |
|
|
312 | 313 | |
|
|
313 | 314 | dataOut = self.listen() |
|
|
314 | 315 | |
|
|
315 | 316 | BaseClass.run(self, dataOut, **self.kwargs) |
|
|
316 | 317 | |
|
|
317 | 318 | if dataOut.error: |
|
|
318 | 319 | break |
|
|
320 | ||
|
|
319 | 321 | time.sleep(1) |
|
|
320 | 322 | |
|
|
321 | 323 | def run(self): |
|
|
322 | 324 | if self.typeProc is "ProcUnit": |
|
|
323 | 325 | |
|
|
324 | 326 | if self.inputId is not None: |
|
|
325 | 327 | |
|
|
326 | 328 | self.subscribe() |
|
|
327 | 329 | |
|
|
328 | 330 | self.set_publisher() |
|
|
329 | 331 | |
|
|
330 | 332 | if 'Reader' not in BaseClass.__name__: |
|
|
331 | 333 | self.runProc() |
|
|
332 | 334 | else: |
|
|
333 | 335 | self.runReader() |
|
|
334 | 336 | |
|
|
335 | 337 | elif self.typeProc is "Operation": |
|
|
336 | 338 | |
|
|
337 | 339 | self.subscribe() |
|
|
338 | 340 | self.runOp() |
|
|
339 | 341 | |
|
|
340 | 342 | else: |
|
|
341 | 343 | raise ValueError("Unknown type") |
|
|
342 | 344 | |
|
|
343 | 345 | self.close() |
|
|
344 | 346 | |
|
|
345 | 347 | def event_monitor(self, monitor): |
|
|
346 | 348 | |
|
|
347 | 349 | events = {} |
|
|
348 | 350 | |
|
|
349 | 351 | for name in dir(zmq): |
|
|
350 | 352 | if name.startswith('EVENT_'): |
|
|
351 | 353 | value = getattr(zmq, name) |
|
|
352 | 354 | events[value] = name |
|
|
353 | 355 | |
|
|
354 | 356 | while monitor.poll(): |
|
|
355 | 357 | evt = recv_monitor_message(monitor) |
|
|
356 | 358 | if evt['event'] == 32: |
|
|
357 | 359 | self.connections += 1 |
|
|
358 | 360 | if evt['event'] == 512: |
|
|
359 | 361 | pass |
|
|
360 | 362 | |
|
|
361 | 363 | evt.update({'description': events[evt['event']]}) |
|
|
362 | 364 | |
|
|
363 | 365 | if evt['event'] == zmq.EVENT_MONITOR_STOPPED: |
|
|
364 | 366 | break |
|
|
365 | 367 | monitor.close() |
|
|
366 | 368 | print('event monitor thread done!') |
|
|
367 | 369 | |
|
|
368 | 370 | def close(self): |
|
|
369 | 371 | |
|
|
370 | 372 | BaseClass.close(self) |
|
|
371 | 373 | |
|
|
372 | 374 | if self.sender: |
|
|
373 | 375 | self.sender.close() |
|
|
374 | 376 | |
|
|
375 | 377 | if self.receiver: |
|
|
376 | 378 | self.receiver.close() |
|
|
377 | 379 | |
|
|
378 | 380 | log.success('Done...(Time:{:4.2f} secs)'.format(time.time()-self.start_time), self.name) |
|
|
379 | 381 | |
|
|
380 | 382 | return MPClass |
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