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schain-jc
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Fix setup and update readme
Juan C. Espinoza -
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1 1 # Signal Chain
2 2
3 3 ## Introduction
4 4
5 5 Signal Chain (SCh) is a radar data processing library developed using [Python](www.python.org) at JRO. SCh provides modules to read, write, process and plot data.
6 6
7 7 ## Installation
8 8
9 Install system dependencies, clone the latest version from [git](http://jro-dev.igp.gob.pe/rhodecode/schain/) and install it as a normal python package.
9 Install system dependencies, clone the latest version from [here](http://jro-dev.igp.gob.pe/rhodecode/schain/) and install it as a normal python package.
10 10
11 11 ### Linux based system
12 12 ```
13 13 $ sudo apt-get install python-pip python-dev gfortran libpng-dev freetype* libblas-dev liblapack-dev libatlas-base-dev python-qt4 python-tk libssl-dev libhdf5-dev
14 14 $ git clone http://jro-dev.igp.gob.pe/rhodecode/schain/
15 15 $ cd schain
16 16 $ sudo pip install ./
17 17
18 18 ```
19 **It is recommended to install schain in a virtual environment**
20 ```
21 $ sudo pip install virtualenv
22 $ virtualenv /path/to/virtual --system-site-packages
23 $ source /path/to/virtual/bin/activate
24 (virtual) $ cd schain
25 (virtual) $ pip install ./
26
27 ```
28 19
29 20 ### MAC Os
30 21 ```
22 $ brew install python
31 23 $ brew install cartr/qt4/pyqt
32 24 $ git clone http://jro-dev.igp.gob.pe/rhodecode/schain/
33 25 $ cd schain
34 26 $ pip install ./
35 27 ```
36 28
37 if ```pip install ./``` does not work, install a proper python enviroment, and repeat the steps.
38 ```
39 $ brew install python
40 ```
41
42 ### GUI Installation
43
29 **It is recommended to install schain in a virtual environment**
44 30 ```
45 $ sudo apt-get install python-pip python-dev gfortran libpng-dev freetype* libblas-dev liblapack-dev libatlas-base-dev python-qt4 python-tk libssl-dev libhdf5-dev
46 $ (virtual) bash link_PyQt4.sh
31 $ virtualenv /path/to/virtual
32 $ source /path/to/virtual/bin/activate
33 (virtual) $ cd schain
34 (virtual) $ pip install ./
35 (virtual) $ bash link_PyQt4.sh
47 36 ```
48 37
49
50 38 ## First Script
51 39
52 40 Read Spectra data (.pdata) - remove dc - plot spectra & RTI
53 41
54 42 Import SCh and creating a project
55 43
56 44 ```python
57 45 #!/usr/bin/python
58 46
59 47 from schainpy.controller import Project
60 48
61 49 controller = Project()
62 50 controller.setup(id = '100',
63 51 name='test',
64 52 description='Basic experiment')
65 53
66 54
67 55 ```
68 56
69 57 Adding read unit and operations
70 58
71 59 ```python
72 60 read_unit = controller.addReadUnit(datatype='Spectra',
73 61 path='/path/to/pdata/',
74 62 startDate='2014/01/31',
75 63 endDate='2014/03/31',
76 64 startTime='00:00:00',
77 65 endTime='23:59:59',
78 66 online=0,
79 67 walk=0)
80 68
81 69 proc_unit = controller.addProcUnit(datatype='Spectra',
82 70 inputId=read_unit.getId())
83 71
84 72 op = proc_unit.addOperation(name='selectChannels')
85 73 op.addParameter(name='channelList', value='0,1', format='intlist')
86 74
87 75 op = proc_unit.addOperation(name='selectHeights')
88 76 op.addParameter(name='minHei', value='80', format='float')
89 77 op.addParameter(name='maxHei', value='200', format='float')
90 78
91 79 op = proc_unit.addOperation(name='removeDC')
92 80
93 81 ```
94 82
95 83 Plotting data & start project
96 84
97 85 ```python
98 86 op = proc_unit.addOperation(name='SpectraPlot', optype='other')
99 87 op.addParameter(name='id', value='1', format='int')
100 88 op.addParameter(name='wintitle', value='Spectra', format='str')
101 89
102 90 op = procUnitConfObj1.addOperation(name='RTIPlot', optype='other')
103 91 op.addParameter(name='id', value='2', format='int')
104 92 op.addParameter(name='wintitle', value='RTI', format='str')
105 93
106 94 controller.start()
107 95
108 96 ```
109 97
110 98 Full script
111 99
112 100
113 101 ```python
114 102 #!/usr/bin/python
115 103
116 104 from schainpy.controller import Project
117 105
118 106 controller = Project()
119 107 controller.setup(id = '100',
120 108 name='test',
121 109 description='Basic experiment')
122 110 read_unit = controller.addReadUnit(datatype='Spectra',
123 111 path='/path/to/pdata/',
124 112 startDate='2014/01/31',
125 113 endDate='2014/03/31',
126 114 startTime='00:00:00',
127 115 endTime='23:59:59',
128 116 online=0,
129 117 walk=0)
130 118
131 119 proc_unit = controller.addProcUnit(datatype='Spectra',
132 120 inputId=read_unit.getId())
133 121
134 122 op = proc_unit.addOperation(name='selectChannels')
135 123 op.addParameter(name='channelList', value='0,1', format='intlist')
136 124
137 125 op = proc_unit.addOperation(name='selectHeights')
138 126 op.addParameter(name='minHei', value='80', format='float')
139 127 op.addParameter(name='maxHei', value='200', format='float')
140 128
141 129 op = proc_unit.addOperation(name='removeDC')
142 130
143 131 op = proc_unit.addOperation(name='SpectraPlot', optype='other')
144 132 op.addParameter(name='id', value='6', format='int')
145 133 op.addParameter(name='wintitle', value='Spectra', format='str')
146 134
147 135 op = procUnitConfObj1.addOperation(name='RTIPlot', optype='other')
148 136 op.addParameter(name='id', value='2', format='int')
149 137 op.addParameter(name='wintitle', value='RTI', format='str')
150 138
151 139 controller.start()
152 140
153 141 ``` No newline at end of file
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1 1 #!/bin/bash
2 2 # This hook is run after a new virtualenv is activated.
3 # ~/.virtualenvs/postmkvirtualenv
4
5 libs=( PyQt4 sip.so )
6 3
7 4 python_version=python$(python -c "import sys; print (str(sys.version_info[0])+'.'+str(sys.version_info[1]))")
8 5 var=( $(which -a $python_version) )
9 6
10 7 get_python_lib_cmd="from distutils.sysconfig import get_python_lib; print (get_python_lib())"
11 8 lib_virtualenv_path=$(python -c "$get_python_lib_cmd")
12 9 lib_system_path=$(${var[-1]} -c "$get_python_lib_cmd")
10 sip_path=$(ls $lib_system_path/sip*.so)
13 11
14 for lib in ${libs[@]}
15 do
16 ln -s $lib_system_path/$lib $lib_virtualenv_path/$lib
17 done
12 echo "Linking Qt4..."
13 ln -s $lib_system_path/PyQt4 $lib_virtualenv_path/PyQt4
14 echo "Linking SIP..."
15 ln -s $sip_path $lib_virtualenv_path/sip.so
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@@ -1,40 +1,40
1 1 #!/usr/bin/env python
2 2 import os
3 3 import sys
4 4 from schainpy.utils import log
5 5
6 6 try:
7 7 from PyQt4 import QtCore, QtGui
8 8 from PyQt4.QtGui import QApplication
9 9 except:
10 10 log.error(
11 'You should install PtQt4 module in order to run the GUI. See the README.')
11 'You should install PyQt4 module in order to run the GUI. See the README.')
12 12 sys.exit()
13 13
14 14
15 15 from schainpy.gui.viewcontroller.initwindow import InitWindow
16 16 from schainpy.gui.viewcontroller.basicwindow import BasicWindow
17 17 from schainpy.gui.viewcontroller.workspace import Workspace
18 18
19 19
20 20 def main():
21 21
22 22 app = QtGui.QApplication(sys.argv)
23 23
24 24 Welcome = InitWindow()
25 25
26 26 if not Welcome.exec_():
27 27 sys.exit(-1)
28 28
29 29 WorkPathspace = Workspace()
30 30 if not WorkPathspace.exec_():
31 31 sys.exit(-1)
32 32
33 33 MainGUI = BasicWindow()
34 34 MainGUI.setWorkSpaceGUI(WorkPathspace.dirComBox.currentText())
35 35 MainGUI.show()
36 36 sys.exit(app.exec_())
37 37
38 38
39 39 if __name__ == "__main__":
40 40 main()
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@@ -1,79 +1,68
1 1 '''
2 2 Created on Jul 16, 2014
3 3
4 4 @author: Miguel Urco
5 5 '''
6 6
7 7 import os
8 8 from setuptools import setup, Extension
9 9 from setuptools.command.build_ext import build_ext as _build_ext
10 10 from schainpy import __version__
11 from schainpy.utils import log
12
13 11
14 12 class build_ext(_build_ext):
15 13 def finalize_options(self):
16 14 _build_ext.finalize_options(self)
17 15 # Prevent numpy from thinking it is still in its setup process:
18 16 __builtins__.__NUMPY_SETUP__ = False
19 17 import numpy
20 18 self.include_dirs.append(numpy.get_include())
21 19
22
23 try:
24 from PyQt4 import QtCore, QtGui
25 from PyQt4.QtGui import QApplication
26 except:
27 log.warning(
28 'You should install PyQt4 module in order to run the GUI. See the README.')
29
30
31 20 setup(name="schainpy",
32 21 version=__version__,
33 22 description="Python tools to read, write and process Jicamarca data",
34 23 author="Miguel Urco",
35 24 author_email="miguel.urco@jro.igp.gob.pe",
36 25 url="http://jro.igp.gob.pe",
37 26 packages={'schainpy',
38 27 'schainpy.model',
39 28 'schainpy.model.data',
40 29 'schainpy.model.graphics',
41 30 'schainpy.model.io',
42 31 'schainpy.model.proc',
43 32 'schainpy.model.serializer',
44 33 'schainpy.model.utils',
45 34 'schainpy.gui',
46 35 'schainpy.gui.figures',
47 36 'schainpy.gui.viewcontroller',
48 37 'schainpy.gui.viewer',
49 38 'schainpy.gui.viewer.windows'},
50 39 ext_package='schainpy',
51 40 py_modules=[''],
52 41 package_data={'': ['schain.conf.template'],
53 42 'schainpy.gui.figures': ['*.png', '*.jpg'],
54 43 },
55 44 include_package_data=False,
56 45 scripts=['schainpy/gui/schainGUI'],
57 46 ext_modules=[
58 47 Extension("cSchain", ["schainpy/model/proc/extensions.c"]
59 48 )],
60 49 entry_points={
61 50 'console_scripts': [
62 51 'schain = schaincli.cli:main',
63 52 ],
64 53 },
65 54 cmdclass={'build_ext': build_ext},
66 55 setup_requires=["numpy >= 1.11.2"],
67 56 install_requires=[
68 57 "scipy >= 0.14.0",
69 58 "h5py >= 2.2.1",
70 59 "matplotlib >= 1.4.2",
71 60 "pyfits >= 3.4",
72 61 "paramiko >= 2.1.2",
73 62 "paho-mqtt >= 1.2",
74 63 "zmq",
75 64 "fuzzywuzzy",
76 65 "click",
77 66 "python-Levenshtein"
78 67 ],
79 68 )
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