@@ -1,824 +1,783 | |||||
1 |
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1 | |||
2 | import os |
|
2 | import os | |
3 | import sys |
|
3 | import sys | |
4 | import zmq |
|
4 | import zmq | |
5 | import time |
|
5 | import time | |
|
6 | import numpy | |||
6 | import datetime |
|
7 | import datetime | |
7 | from functools import wraps |
|
8 | from functools import wraps | |
8 | import numpy |
|
9 | from threading import Thread | |
9 | import matplotlib |
|
10 | import matplotlib | |
10 |
|
11 | |||
11 | if 'BACKEND' in os.environ: |
|
12 | if 'BACKEND' in os.environ: | |
12 | matplotlib.use(os.environ['BACKEND']) |
|
13 | matplotlib.use(os.environ['BACKEND']) | |
13 | elif 'linux' in sys.platform: |
|
14 | elif 'linux' in sys.platform: | |
14 | matplotlib.use("TkAgg") |
|
15 | matplotlib.use("TkAgg") | |
15 | elif 'darwin' in sys.platform: |
|
16 | elif 'darwin' in sys.platform: | |
16 |
matplotlib.use(' |
|
17 | matplotlib.use('WxAgg') | |
17 | else: |
|
18 | else: | |
18 | from schainpy.utils import log |
|
19 | from schainpy.utils import log | |
19 | log.warning('Using default Backend="Agg"', 'INFO') |
|
20 | log.warning('Using default Backend="Agg"', 'INFO') | |
20 | matplotlib.use('Agg') |
|
21 | matplotlib.use('Agg') | |
21 |
|
22 | |||
22 | import matplotlib.pyplot as plt |
|
23 | import matplotlib.pyplot as plt | |
23 | from matplotlib.patches import Polygon |
|
24 | from matplotlib.patches import Polygon | |
24 | from mpl_toolkits.axes_grid1 import make_axes_locatable |
|
25 | from mpl_toolkits.axes_grid1 import make_axes_locatable | |
25 | from matplotlib.ticker import FuncFormatter, LinearLocator, MultipleLocator |
|
26 | from matplotlib.ticker import FuncFormatter, LinearLocator, MultipleLocator | |
26 |
|
27 | |||
27 | from schainpy.model.data.jrodata import PlotterData |
|
28 | from schainpy.model.data.jrodata import PlotterData | |
28 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator |
|
29 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation, MPDecorator | |
29 | from schainpy.utils import log |
|
30 | from schainpy.utils import log | |
30 |
|
31 | |||
31 | jet_values = matplotlib.pyplot.get_cmap('jet', 100)(numpy.arange(100))[10:90] |
|
32 | jet_values = matplotlib.pyplot.get_cmap('jet', 100)(numpy.arange(100))[10:90] | |
32 | blu_values = matplotlib.pyplot.get_cmap( |
|
33 | blu_values = matplotlib.pyplot.get_cmap( | |
33 | 'seismic_r', 20)(numpy.arange(20))[10:15] |
|
34 | 'seismic_r', 20)(numpy.arange(20))[10:15] | |
34 | ncmap = matplotlib.colors.LinearSegmentedColormap.from_list( |
|
35 | ncmap = matplotlib.colors.LinearSegmentedColormap.from_list( | |
35 | 'jro', numpy.vstack((blu_values, jet_values))) |
|
36 | 'jro', numpy.vstack((blu_values, jet_values))) | |
36 | matplotlib.pyplot.register_cmap(cmap=ncmap) |
|
37 | matplotlib.pyplot.register_cmap(cmap=ncmap) | |
37 |
|
38 | |||
38 | CMAPS = [plt.get_cmap(s) for s in ('jro', 'jet', 'viridis', |
|
39 | CMAPS = [plt.get_cmap(s) for s in ('jro', 'jet', 'viridis', | |
39 | 'plasma', 'inferno', 'Greys', 'seismic', 'bwr', 'coolwarm')] |
|
40 | 'plasma', 'inferno', 'Greys', 'seismic', 'bwr', 'coolwarm')] | |
40 |
|
41 | |||
41 | EARTH_RADIUS = 6.3710e3 |
|
42 | EARTH_RADIUS = 6.3710e3 | |
42 |
|
43 | |||
43 |
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||||
44 | def ll2xy(lat1, lon1, lat2, lon2): |
|
44 | def ll2xy(lat1, lon1, lat2, lon2): | |
45 |
|
45 | |||
46 | p = 0.017453292519943295 |
|
46 | p = 0.017453292519943295 | |
47 | a = 0.5 - numpy.cos((lat2 - lat1) * p)/2 + numpy.cos(lat1 * p) * \ |
|
47 | a = 0.5 - numpy.cos((lat2 - lat1) * p)/2 + numpy.cos(lat1 * p) * \ | |
48 | numpy.cos(lat2 * p) * (1 - numpy.cos((lon2 - lon1) * p)) / 2 |
|
48 | numpy.cos(lat2 * p) * (1 - numpy.cos((lon2 - lon1) * p)) / 2 | |
49 | r = 12742 * numpy.arcsin(numpy.sqrt(a)) |
|
49 | r = 12742 * numpy.arcsin(numpy.sqrt(a)) | |
50 | theta = numpy.arctan2(numpy.sin((lon2-lon1)*p)*numpy.cos(lat2*p), numpy.cos(lat1*p) |
|
50 | theta = numpy.arctan2(numpy.sin((lon2-lon1)*p)*numpy.cos(lat2*p), numpy.cos(lat1*p) | |
51 | * numpy.sin(lat2*p)-numpy.sin(lat1*p)*numpy.cos(lat2*p)*numpy.cos((lon2-lon1)*p)) |
|
51 | * numpy.sin(lat2*p)-numpy.sin(lat1*p)*numpy.cos(lat2*p)*numpy.cos((lon2-lon1)*p)) | |
52 | theta = -theta + numpy.pi/2 |
|
52 | theta = -theta + numpy.pi/2 | |
53 | return r*numpy.cos(theta), r*numpy.sin(theta) |
|
53 | return r*numpy.cos(theta), r*numpy.sin(theta) | |
54 |
|
54 | |||
55 |
|
55 | |||
56 | def km2deg(km): |
|
56 | def km2deg(km): | |
57 | ''' |
|
57 | ''' | |
58 | Convert distance in km to degrees |
|
58 | Convert distance in km to degrees | |
59 | ''' |
|
59 | ''' | |
60 |
|
60 | |||
61 | return numpy.rad2deg(km/EARTH_RADIUS) |
|
61 | return numpy.rad2deg(km/EARTH_RADIUS) | |
62 |
|
62 | |||
63 |
|
63 | |||
64 | def figpause(interval): |
|
64 | def figpause(interval): | |
65 | backend = plt.rcParams['backend'] |
|
65 | backend = plt.rcParams['backend'] | |
66 | if backend in matplotlib.rcsetup.interactive_bk: |
|
66 | if backend in matplotlib.rcsetup.interactive_bk: | |
67 | figManager = matplotlib._pylab_helpers.Gcf.get_active() |
|
67 | figManager = matplotlib._pylab_helpers.Gcf.get_active() | |
68 | if figManager is not None: |
|
68 | if figManager is not None: | |
69 | canvas = figManager.canvas |
|
69 | canvas = figManager.canvas | |
70 | if canvas.figure.stale: |
|
70 | if canvas.figure.stale: | |
71 | canvas.draw() |
|
71 | canvas.draw() | |
72 | try: |
|
72 | try: | |
73 | canvas.start_event_loop(interval) |
|
73 | canvas.start_event_loop(interval) | |
74 | except: |
|
74 | except: | |
75 | pass |
|
75 | pass | |
76 | return |
|
76 | return | |
77 |
|
77 | |||
78 |
|
78 | |||
79 | def popup(message): |
|
79 | def popup(message): | |
80 | ''' |
|
80 | ''' | |
81 | ''' |
|
81 | ''' | |
82 |
|
82 | |||
83 | fig = plt.figure(figsize=(12, 8), facecolor='r') |
|
83 | fig = plt.figure(figsize=(12, 8), facecolor='r') | |
84 | text = '\n'.join([s.strip() for s in message.split(':')]) |
|
84 | text = '\n'.join([s.strip() for s in message.split(':')]) | |
85 | fig.text(0.01, 0.5, text, ha='left', va='center', |
|
85 | fig.text(0.01, 0.5, text, ha='left', va='center', | |
86 | size='20', weight='heavy', color='w') |
|
86 | size='20', weight='heavy', color='w') | |
87 | fig.show() |
|
87 | fig.show() | |
88 | figpause(1000) |
|
88 | figpause(1000) | |
89 |
|
89 | |||
90 |
|
90 | |||
91 | class Throttle(object): |
|
91 | class Throttle(object): | |
92 | ''' |
|
92 | ''' | |
93 | Decorator that prevents a function from being called more than once every |
|
93 | Decorator that prevents a function from being called more than once every | |
94 | time period. |
|
94 | time period. | |
95 | To create a function that cannot be called more than once a minute, but |
|
95 | To create a function that cannot be called more than once a minute, but | |
96 | will sleep until it can be called: |
|
96 | will sleep until it can be called: | |
97 | @Throttle(minutes=1) |
|
97 | @Throttle(minutes=1) | |
98 | def foo(): |
|
98 | def foo(): | |
99 | pass |
|
99 | pass | |
100 |
|
100 | |||
101 | for i in range(10): |
|
101 | for i in range(10): | |
102 | foo() |
|
102 | foo() | |
103 | print "This function has run %s times." % i |
|
103 | print "This function has run %s times." % i | |
104 | ''' |
|
104 | ''' | |
105 |
|
105 | |||
106 | def __init__(self, seconds=0, minutes=0, hours=0): |
|
106 | def __init__(self, seconds=0, minutes=0, hours=0): | |
107 | self.throttle_period = datetime.timedelta( |
|
107 | self.throttle_period = datetime.timedelta( | |
108 | seconds=seconds, minutes=minutes, hours=hours |
|
108 | seconds=seconds, minutes=minutes, hours=hours | |
109 | ) |
|
109 | ) | |
110 |
|
110 | |||
111 | self.time_of_last_call = datetime.datetime.min |
|
111 | self.time_of_last_call = datetime.datetime.min | |
112 |
|
112 | |||
113 | def __call__(self, fn): |
|
113 | def __call__(self, fn): | |
114 | @wraps(fn) |
|
114 | @wraps(fn) | |
115 | def wrapper(*args, **kwargs): |
|
115 | def wrapper(*args, **kwargs): | |
116 | coerce = kwargs.pop('coerce', None) |
|
116 | coerce = kwargs.pop('coerce', None) | |
117 | if coerce: |
|
117 | if coerce: | |
118 | self.time_of_last_call = datetime.datetime.now() |
|
118 | self.time_of_last_call = datetime.datetime.now() | |
119 | return fn(*args, **kwargs) |
|
119 | return fn(*args, **kwargs) | |
120 | else: |
|
120 | else: | |
121 | now = datetime.datetime.now() |
|
121 | now = datetime.datetime.now() | |
122 | time_since_last_call = now - self.time_of_last_call |
|
122 | time_since_last_call = now - self.time_of_last_call | |
123 | time_left = self.throttle_period - time_since_last_call |
|
123 | time_left = self.throttle_period - time_since_last_call | |
124 |
|
124 | |||
125 | if time_left > datetime.timedelta(seconds=0): |
|
125 | if time_left > datetime.timedelta(seconds=0): | |
126 | return |
|
126 | return | |
127 |
|
127 | |||
128 | self.time_of_last_call = datetime.datetime.now() |
|
128 | self.time_of_last_call = datetime.datetime.now() | |
129 | return fn(*args, **kwargs) |
|
129 | return fn(*args, **kwargs) | |
130 |
|
130 | |||
131 | return wrapper |
|
131 | return wrapper | |
132 |
|
132 | |||
133 | def apply_throttle(value): |
|
133 | def apply_throttle(value): | |
134 |
|
134 | |||
135 | @Throttle(seconds=value) |
|
135 | @Throttle(seconds=value) | |
136 | def fnThrottled(fn): |
|
136 | def fnThrottled(fn): | |
137 | fn() |
|
137 | fn() | |
138 |
|
138 | |||
139 | return fnThrottled |
|
139 | return fnThrottled | |
140 |
|
140 | |||
141 | @MPDecorator |
|
|||
142 | class Plotter(ProcessingUnit): |
|
|||
143 | ''' |
|
|||
144 | Proccessing unit to handle plot operations |
|
|||
145 | ''' |
|
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146 |
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||||
147 | def __init__(self): |
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148 |
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149 | ProcessingUnit.__init__(self) |
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150 |
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151 | def setup(self, **kwargs): |
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152 |
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153 | self.connections = 0 |
|
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154 | self.web_address = kwargs.get('web_server', False) |
|
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155 | self.realtime = kwargs.get('realtime', False) |
|
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156 | self.localtime = kwargs.get('localtime', True) |
|
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157 | self.buffering = kwargs.get('buffering', True) |
|
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158 | self.throttle = kwargs.get('throttle', 2) |
|
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159 | self.exp_code = kwargs.get('exp_code', None) |
|
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160 | self.set_ready = apply_throttle(self.throttle) |
|
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161 | self.dates = [] |
|
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162 | self.data = PlotterData( |
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163 | self.plots, self.throttle, self.exp_code, self.buffering) |
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164 | self.isConfig = True |
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165 |
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166 | def ready(self): |
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167 | ''' |
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168 | Set dataOut ready |
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|||
169 | ''' |
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170 |
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171 | self.data.ready = True |
|
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172 | self.dataOut.data_plt = self.data |
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173 |
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174 | def run(self, realtime=True, localtime=True, buffering=True, |
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175 | throttle=2, exp_code=None, web_server=None): |
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176 |
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177 | if not self.isConfig: |
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178 | self.setup(realtime=realtime, localtime=localtime, |
|
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179 | buffering=buffering, throttle=throttle, exp_code=exp_code, |
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180 | web_server=web_server) |
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181 |
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182 | if self.web_address: |
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183 | log.success( |
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184 | 'Sending to web: {}'.format(self.web_address), |
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185 | self.name |
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186 | ) |
|
|||
187 | self.context = zmq.Context() |
|
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188 | self.sender_web = self.context.socket(zmq.REQ) |
|
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189 | self.sender_web.connect(self.web_address) |
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190 | self.poll = zmq.Poller() |
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191 | self.poll.register(self.sender_web, zmq.POLLIN) |
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192 | time.sleep(1) |
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193 |
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194 | # t = Thread(target=self.event_monitor, args=(monitor,)) |
|
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195 | # t.start() |
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196 |
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197 | self.dataOut = self.dataIn |
|
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198 | self.data.ready = False |
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199 |
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200 | if self.dataOut.flagNoData: |
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201 | coerce = True |
|
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202 | else: |
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203 | coerce = False |
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204 |
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205 | if self.dataOut.type == 'Parameters': |
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206 | tm = self.dataOut.utctimeInit |
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207 | else: |
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208 | tm = self.dataOut.utctime |
|
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209 | if self.dataOut.useLocalTime: |
|
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210 | if not self.localtime: |
|
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211 | tm += time.timezone |
|
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212 | dt = datetime.datetime.fromtimestamp(tm).date() |
|
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213 | else: |
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214 | if self.localtime: |
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215 | tm -= time.timezone |
|
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216 | dt = datetime.datetime.utcfromtimestamp(tm).date() |
|
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217 | if dt not in self.dates: |
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218 | if self.data: |
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219 | self.ready() |
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220 | self.data.setup() |
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221 | self.dates.append(dt) |
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222 |
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223 | self.data.update(self.dataOut, tm) |
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224 |
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225 | if False: # TODO check when publishers ends |
|
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226 | self.connections -= 1 |
|
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227 | if self.connections == 0 and dt in self.dates: |
|
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228 | self.data.ended = True |
|
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229 | self.ready() |
|
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230 | time.sleep(1) |
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231 | else: |
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232 | if self.realtime: |
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233 | self.ready() |
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234 | if self.web_address: |
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235 | retries = 5 |
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236 | while True: |
|
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237 | self.sender_web.send(self.data.jsonify()) |
|
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238 | socks = dict(self.poll.poll(5000)) |
|
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239 | if socks.get(self.sender_web) == zmq.POLLIN: |
|
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240 | reply = self.sender_web.recv_string() |
|
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241 | if reply == 'ok': |
|
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242 | log.log("Response from server ok", self.name) |
|
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243 | break |
|
|||
244 | else: |
|
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245 | log.warning( |
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246 | "Malformed reply from server: {}".format(reply), self.name) |
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247 |
|
||||
248 | else: |
|
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249 | log.warning( |
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250 | "No response from server, retrying...", self.name) |
|
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251 | self.sender_web.setsockopt(zmq.LINGER, 0) |
|
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252 | self.sender_web.close() |
|
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253 | self.poll.unregister(self.sender_web) |
|
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254 | retries -= 1 |
|
|||
255 | if retries == 0: |
|
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256 | log.error( |
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257 | "Server seems to be offline, abandoning", self.name) |
|
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258 | self.sender_web = self.context.socket(zmq.REQ) |
|
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259 | self.sender_web.connect(self.web_address) |
|
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260 | self.poll.register(self.sender_web, zmq.POLLIN) |
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261 | time.sleep(1) |
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262 | break |
|
|||
263 | self.sender_web = self.context.socket(zmq.REQ) |
|
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264 | self.sender_web.connect(self.web_address) |
|
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265 | self.poll.register(self.sender_web, zmq.POLLIN) |
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266 | time.sleep(1) |
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267 | else: |
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268 | self.set_ready(self.ready, coerce=coerce) |
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269 |
|
||||
270 | return |
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271 |
|
||||
272 | def close(self): |
|
|||
273 | pass |
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274 |
|
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275 |
|
141 | |||
276 | @MPDecorator |
|
142 | @MPDecorator | |
277 | class Plot(Operation): |
|
143 | class Plot(Operation): | |
278 | ''' |
|
144 | ''' | |
279 | Base class for Schain plotting operations |
|
145 | Base class for Schain plotting operations | |
280 | ''' |
|
146 | ''' | |
281 |
|
147 | |||
282 | CODE = 'Figure' |
|
148 | CODE = 'Figure' | |
283 |
colormap = 'j |
|
149 | colormap = 'jet' | |
284 | bgcolor = 'white' |
|
150 | bgcolor = 'white' | |
285 | __missing = 1E30 |
|
151 | __missing = 1E30 | |
286 |
|
152 | |||
287 | __attrs__ = ['show', 'save', 'xmin', 'xmax', 'ymin', 'ymax', 'zmin', 'zmax', |
|
153 | __attrs__ = ['show', 'save', 'xmin', 'xmax', 'ymin', 'ymax', 'zmin', 'zmax', | |
288 | 'zlimits', 'xlabel', 'ylabel', 'xaxis', 'cb_label', 'title', |
|
154 | 'zlimits', 'xlabel', 'ylabel', 'xaxis', 'cb_label', 'title', | |
289 | 'colorbar', 'bgcolor', 'width', 'height', 'localtime', 'oneFigure', |
|
155 | 'colorbar', 'bgcolor', 'width', 'height', 'localtime', 'oneFigure', | |
290 | 'showprofile', 'decimation', 'pause'] |
|
156 | 'showprofile', 'decimation', 'pause'] | |
291 |
|
157 | |||
292 | def __init__(self): |
|
158 | def __init__(self): | |
293 |
|
159 | |||
294 | Operation.__init__(self) |
|
160 | Operation.__init__(self) | |
295 | self.isConfig = False |
|
161 | self.isConfig = False | |
296 | self.isPlotConfig = False |
|
162 | self.isPlotConfig = False | |
|
163 | self.save_counter = 1 | |||
|
164 | self.sender_counter = 1 | |||
297 |
|
165 | |||
298 | def __fmtTime(self, x, pos): |
|
166 | def __fmtTime(self, x, pos): | |
299 | ''' |
|
167 | ''' | |
300 | ''' |
|
168 | ''' | |
301 |
|
169 | |||
302 | return '{}'.format(self.getDateTime(x).strftime('%H:%M')) |
|
170 | return '{}'.format(self.getDateTime(x).strftime('%H:%M')) | |
303 |
|
171 | |||
304 | def __setup(self, **kwargs): |
|
172 | def __setup(self, **kwargs): | |
305 | ''' |
|
173 | ''' | |
306 | Initialize variables |
|
174 | Initialize variables | |
307 | ''' |
|
175 | ''' | |
308 |
|
176 | |||
309 | self.figures = [] |
|
177 | self.figures = [] | |
310 | self.axes = [] |
|
178 | self.axes = [] | |
311 | self.cb_axes = [] |
|
179 | self.cb_axes = [] | |
312 | self.localtime = kwargs.pop('localtime', True) |
|
180 | self.localtime = kwargs.pop('localtime', True) | |
313 | self.show = kwargs.get('show', True) |
|
181 | self.show = kwargs.get('show', True) | |
314 | self.save = kwargs.get('save', False) |
|
182 | self.save = kwargs.get('save', False) | |
|
183 | self.save_period = kwargs.get('save_period', 2) | |||
315 | self.ftp = kwargs.get('ftp', False) |
|
184 | self.ftp = kwargs.get('ftp', False) | |
316 | self.colormap = kwargs.get('colormap', self.colormap) |
|
185 | self.colormap = kwargs.get('colormap', self.colormap) | |
317 | self.colormap_coh = kwargs.get('colormap_coh', 'jet') |
|
186 | self.colormap_coh = kwargs.get('colormap_coh', 'jet') | |
318 | self.colormap_phase = kwargs.get('colormap_phase', 'RdBu_r') |
|
187 | self.colormap_phase = kwargs.get('colormap_phase', 'RdBu_r') | |
319 | self.colormaps = kwargs.get('colormaps', None) |
|
188 | self.colormaps = kwargs.get('colormaps', None) | |
320 | self.bgcolor = kwargs.get('bgcolor', self.bgcolor) |
|
189 | self.bgcolor = kwargs.get('bgcolor', self.bgcolor) | |
321 | self.showprofile = kwargs.get('showprofile', False) |
|
190 | self.showprofile = kwargs.get('showprofile', False) | |
322 | self.title = kwargs.get('wintitle', self.CODE.upper()) |
|
191 | self.title = kwargs.get('wintitle', self.CODE.upper()) | |
323 | self.cb_label = kwargs.get('cb_label', None) |
|
192 | self.cb_label = kwargs.get('cb_label', None) | |
324 | self.cb_labels = kwargs.get('cb_labels', None) |
|
193 | self.cb_labels = kwargs.get('cb_labels', None) | |
325 | self.labels = kwargs.get('labels', None) |
|
194 | self.labels = kwargs.get('labels', None) | |
326 | self.xaxis = kwargs.get('xaxis', 'frequency') |
|
195 | self.xaxis = kwargs.get('xaxis', 'frequency') | |
327 | self.zmin = kwargs.get('zmin', None) |
|
196 | self.zmin = kwargs.get('zmin', None) | |
328 | self.zmax = kwargs.get('zmax', None) |
|
197 | self.zmax = kwargs.get('zmax', None) | |
329 | self.zlimits = kwargs.get('zlimits', None) |
|
198 | self.zlimits = kwargs.get('zlimits', None) | |
330 | self.xmin = kwargs.get('xmin', None) |
|
199 | self.xmin = kwargs.get('xmin', None) | |
331 | self.xmax = kwargs.get('xmax', None) |
|
200 | self.xmax = kwargs.get('xmax', None) | |
332 | self.xrange = kwargs.get('xrange', 12) |
|
201 | self.xrange = kwargs.get('xrange', 12) | |
333 | self.xscale = kwargs.get('xscale', None) |
|
202 | self.xscale = kwargs.get('xscale', None) | |
334 | self.ymin = kwargs.get('ymin', None) |
|
203 | self.ymin = kwargs.get('ymin', None) | |
335 | self.ymax = kwargs.get('ymax', None) |
|
204 | self.ymax = kwargs.get('ymax', None) | |
336 | self.yscale = kwargs.get('yscale', None) |
|
205 | self.yscale = kwargs.get('yscale', None) | |
337 | self.xlabel = kwargs.get('xlabel', None) |
|
206 | self.xlabel = kwargs.get('xlabel', None) | |
338 | self.decimation = kwargs.get('decimation', None) |
|
207 | self.decimation = kwargs.get('decimation', None) | |
339 | self.showSNR = kwargs.get('showSNR', False) |
|
208 | self.showSNR = kwargs.get('showSNR', False) | |
340 | self.oneFigure = kwargs.get('oneFigure', True) |
|
209 | self.oneFigure = kwargs.get('oneFigure', True) | |
341 | self.width = kwargs.get('width', None) |
|
210 | self.width = kwargs.get('width', None) | |
342 | self.height = kwargs.get('height', None) |
|
211 | self.height = kwargs.get('height', None) | |
343 | self.colorbar = kwargs.get('colorbar', True) |
|
212 | self.colorbar = kwargs.get('colorbar', True) | |
344 | self.factors = kwargs.get('factors', [1, 1, 1, 1, 1, 1, 1, 1]) |
|
213 | self.factors = kwargs.get('factors', [1, 1, 1, 1, 1, 1, 1, 1]) | |
345 | self.channels = kwargs.get('channels', None) |
|
214 | self.channels = kwargs.get('channels', None) | |
346 | self.titles = kwargs.get('titles', []) |
|
215 | self.titles = kwargs.get('titles', []) | |
347 | self.polar = False |
|
216 | self.polar = False | |
348 | self.type = kwargs.get('type', 'iq') |
|
217 | self.type = kwargs.get('type', 'iq') | |
349 | self.grid = kwargs.get('grid', False) |
|
218 | self.grid = kwargs.get('grid', False) | |
350 | self.pause = kwargs.get('pause', False) |
|
219 | self.pause = kwargs.get('pause', False) | |
351 | self.save_labels = kwargs.get('save_labels', None) |
|
220 | self.save_labels = kwargs.get('save_labels', None) | |
352 | self.realtime = kwargs.get('realtime', True) |
|
221 | self.realtime = kwargs.get('realtime', True) | |
353 | self.buffering = kwargs.get('buffering', True) |
|
222 | self.buffering = kwargs.get('buffering', True) | |
354 | self.throttle = kwargs.get('throttle', 2) |
|
223 | self.throttle = kwargs.get('throttle', 2) | |
355 | self.exp_code = kwargs.get('exp_code', None) |
|
224 | self.exp_code = kwargs.get('exp_code', None) | |
|
225 | self.plot_server = kwargs.get('plot_server', False) | |||
|
226 | self.sender_period = kwargs.get('sender_period', 2) | |||
356 | self.__throttle_plot = apply_throttle(self.throttle) |
|
227 | self.__throttle_plot = apply_throttle(self.throttle) | |
357 | self.data = PlotterData( |
|
228 | self.data = PlotterData( | |
358 | self.CODE, self.throttle, self.exp_code, self.buffering) |
|
229 | self.CODE, self.throttle, self.exp_code, self.buffering) | |
|
230 | ||||
|
231 | if self.plot_server: | |||
|
232 | if not self.plot_server.startswith('tcp://'): | |||
|
233 | self.plot_server = 'tcp://{}'.format(self.plot_server) | |||
|
234 | log.success( | |||
|
235 | 'Sending to server: {}'.format(self.plot_server), | |||
|
236 | self.name | |||
|
237 | ) | |||
359 |
|
238 | |||
360 | def __setup_plot(self): |
|
239 | def __setup_plot(self): | |
361 | ''' |
|
240 | ''' | |
362 | Common setup for all figures, here figures and axes are created |
|
241 | Common setup for all figures, here figures and axes are created | |
363 | ''' |
|
242 | ''' | |
364 |
|
243 | |||
365 | self.setup() |
|
244 | self.setup() | |
366 |
|
245 | |||
367 | self.time_label = 'LT' if self.localtime else 'UTC' |
|
246 | self.time_label = 'LT' if self.localtime else 'UTC' | |
368 | if self.data.localtime: |
|
247 | if self.data.localtime: | |
369 | self.getDateTime = datetime.datetime.fromtimestamp |
|
248 | self.getDateTime = datetime.datetime.fromtimestamp | |
370 | else: |
|
249 | else: | |
371 | self.getDateTime = datetime.datetime.utcfromtimestamp |
|
250 | self.getDateTime = datetime.datetime.utcfromtimestamp | |
372 |
|
251 | |||
373 | if self.width is None: |
|
252 | if self.width is None: | |
374 | self.width = 8 |
|
253 | self.width = 8 | |
375 |
|
254 | |||
376 | self.figures = [] |
|
255 | self.figures = [] | |
377 | self.axes = [] |
|
256 | self.axes = [] | |
378 | self.cb_axes = [] |
|
257 | self.cb_axes = [] | |
379 | self.pf_axes = [] |
|
258 | self.pf_axes = [] | |
380 | self.cmaps = [] |
|
259 | self.cmaps = [] | |
381 |
|
260 | |||
382 | size = '15%' if self.ncols == 1 else '30%' |
|
261 | size = '15%' if self.ncols == 1 else '30%' | |
383 | pad = '4%' if self.ncols == 1 else '8%' |
|
262 | pad = '4%' if self.ncols == 1 else '8%' | |
384 |
|
263 | |||
385 | if self.oneFigure: |
|
264 | if self.oneFigure: | |
386 | if self.height is None: |
|
265 | if self.height is None: | |
387 | self.height = 1.4 * self.nrows + 1 |
|
266 | self.height = 1.4 * self.nrows + 1 | |
388 | fig = plt.figure(figsize=(self.width, self.height), |
|
267 | fig = plt.figure(figsize=(self.width, self.height), | |
389 | edgecolor='k', |
|
268 | edgecolor='k', | |
390 | facecolor='w') |
|
269 | facecolor='w') | |
391 | self.figures.append(fig) |
|
270 | self.figures.append(fig) | |
392 | for n in range(self.nplots): |
|
271 | for n in range(self.nplots): | |
393 | ax = fig.add_subplot(self.nrows, self.ncols, |
|
272 | ax = fig.add_subplot(self.nrows, self.ncols, | |
394 | n + 1, polar=self.polar) |
|
273 | n + 1, polar=self.polar) | |
395 | ax.tick_params(labelsize=8) |
|
274 | ax.tick_params(labelsize=8) | |
396 | ax.firsttime = True |
|
275 | ax.firsttime = True | |
397 | ax.index = 0 |
|
276 | ax.index = 0 | |
398 | ax.press = None |
|
277 | ax.press = None | |
399 | self.axes.append(ax) |
|
278 | self.axes.append(ax) | |
400 | if self.showprofile: |
|
279 | if self.showprofile: | |
401 | cax = self.__add_axes(ax, size=size, pad=pad) |
|
280 | cax = self.__add_axes(ax, size=size, pad=pad) | |
402 | cax.tick_params(labelsize=8) |
|
281 | cax.tick_params(labelsize=8) | |
403 | self.pf_axes.append(cax) |
|
282 | self.pf_axes.append(cax) | |
404 | else: |
|
283 | else: | |
405 | if self.height is None: |
|
284 | if self.height is None: | |
406 | self.height = 3 |
|
285 | self.height = 3 | |
407 | for n in range(self.nplots): |
|
286 | for n in range(self.nplots): | |
408 | fig = plt.figure(figsize=(self.width, self.height), |
|
287 | fig = plt.figure(figsize=(self.width, self.height), | |
409 | edgecolor='k', |
|
288 | edgecolor='k', | |
410 | facecolor='w') |
|
289 | facecolor='w') | |
411 | ax = fig.add_subplot(1, 1, 1, polar=self.polar) |
|
290 | ax = fig.add_subplot(1, 1, 1, polar=self.polar) | |
412 | ax.tick_params(labelsize=8) |
|
291 | ax.tick_params(labelsize=8) | |
413 | ax.firsttime = True |
|
292 | ax.firsttime = True | |
414 | ax.index = 0 |
|
293 | ax.index = 0 | |
415 | ax.press = None |
|
294 | ax.press = None | |
416 | self.figures.append(fig) |
|
295 | self.figures.append(fig) | |
417 | self.axes.append(ax) |
|
296 | self.axes.append(ax) | |
418 | if self.showprofile: |
|
297 | if self.showprofile: | |
419 | cax = self.__add_axes(ax, size=size, pad=pad) |
|
298 | cax = self.__add_axes(ax, size=size, pad=pad) | |
420 | cax.tick_params(labelsize=8) |
|
299 | cax.tick_params(labelsize=8) | |
421 | self.pf_axes.append(cax) |
|
300 | self.pf_axes.append(cax) | |
422 |
|
301 | |||
423 | for n in range(self.nrows): |
|
302 | for n in range(self.nrows): | |
424 | if self.colormaps is not None: |
|
303 | if self.colormaps is not None: | |
425 | cmap = plt.get_cmap(self.colormaps[n]) |
|
304 | cmap = plt.get_cmap(self.colormaps[n]) | |
426 | else: |
|
305 | else: | |
427 | cmap = plt.get_cmap(self.colormap) |
|
306 | cmap = plt.get_cmap(self.colormap) | |
428 | cmap.set_bad(self.bgcolor, 1.) |
|
307 | cmap.set_bad(self.bgcolor, 1.) | |
429 | self.cmaps.append(cmap) |
|
308 | self.cmaps.append(cmap) | |
430 |
|
309 | |||
431 | for fig in self.figures: |
|
310 | for fig in self.figures: | |
432 | fig.canvas.mpl_connect('key_press_event', self.OnKeyPress) |
|
311 | fig.canvas.mpl_connect('key_press_event', self.OnKeyPress) | |
433 | fig.canvas.mpl_connect('scroll_event', self.OnBtnScroll) |
|
312 | fig.canvas.mpl_connect('scroll_event', self.OnBtnScroll) | |
434 | fig.canvas.mpl_connect('button_press_event', self.onBtnPress) |
|
313 | fig.canvas.mpl_connect('button_press_event', self.onBtnPress) | |
435 | fig.canvas.mpl_connect('motion_notify_event', self.onMotion) |
|
314 | fig.canvas.mpl_connect('motion_notify_event', self.onMotion) | |
436 | fig.canvas.mpl_connect('button_release_event', self.onBtnRelease) |
|
315 | fig.canvas.mpl_connect('button_release_event', self.onBtnRelease) | |
437 | if self.show: |
|
316 | if self.show: | |
438 | fig.show() |
|
317 | fig.show() | |
439 |
|
318 | |||
440 | def OnKeyPress(self, event): |
|
319 | def OnKeyPress(self, event): | |
441 | ''' |
|
320 | ''' | |
442 | Event for pressing keys (up, down) change colormap |
|
321 | Event for pressing keys (up, down) change colormap | |
443 | ''' |
|
322 | ''' | |
444 | ax = event.inaxes |
|
323 | ax = event.inaxes | |
445 | if ax in self.axes: |
|
324 | if ax in self.axes: | |
446 | if event.key == 'down': |
|
325 | if event.key == 'down': | |
447 | ax.index += 1 |
|
326 | ax.index += 1 | |
448 | elif event.key == 'up': |
|
327 | elif event.key == 'up': | |
449 | ax.index -= 1 |
|
328 | ax.index -= 1 | |
450 | if ax.index < 0: |
|
329 | if ax.index < 0: | |
451 | ax.index = len(CMAPS) - 1 |
|
330 | ax.index = len(CMAPS) - 1 | |
452 | elif ax.index == len(CMAPS): |
|
331 | elif ax.index == len(CMAPS): | |
453 | ax.index = 0 |
|
332 | ax.index = 0 | |
454 | cmap = CMAPS[ax.index] |
|
333 | cmap = CMAPS[ax.index] | |
455 | ax.cbar.set_cmap(cmap) |
|
334 | ax.cbar.set_cmap(cmap) | |
456 | ax.cbar.draw_all() |
|
335 | ax.cbar.draw_all() | |
457 | ax.plt.set_cmap(cmap) |
|
336 | ax.plt.set_cmap(cmap) | |
458 | ax.cbar.patch.figure.canvas.draw() |
|
337 | ax.cbar.patch.figure.canvas.draw() | |
459 | self.colormap = cmap.name |
|
338 | self.colormap = cmap.name | |
460 |
|
339 | |||
461 | def OnBtnScroll(self, event): |
|
340 | def OnBtnScroll(self, event): | |
462 | ''' |
|
341 | ''' | |
463 | Event for scrolling, scale figure |
|
342 | Event for scrolling, scale figure | |
464 | ''' |
|
343 | ''' | |
465 | cb_ax = event.inaxes |
|
344 | cb_ax = event.inaxes | |
466 | if cb_ax in [ax.cbar.ax for ax in self.axes if ax.cbar]: |
|
345 | if cb_ax in [ax.cbar.ax for ax in self.axes if ax.cbar]: | |
467 | ax = [ax for ax in self.axes if cb_ax == ax.cbar.ax][0] |
|
346 | ax = [ax for ax in self.axes if cb_ax == ax.cbar.ax][0] | |
468 | pt = ax.cbar.ax.bbox.get_points()[:, 1] |
|
347 | pt = ax.cbar.ax.bbox.get_points()[:, 1] | |
469 | nrm = ax.cbar.norm |
|
348 | nrm = ax.cbar.norm | |
470 | vmin, vmax, p0, p1, pS = ( |
|
349 | vmin, vmax, p0, p1, pS = ( | |
471 | nrm.vmin, nrm.vmax, pt[0], pt[1], event.y) |
|
350 | nrm.vmin, nrm.vmax, pt[0], pt[1], event.y) | |
472 | scale = 2 if event.step == 1 else 0.5 |
|
351 | scale = 2 if event.step == 1 else 0.5 | |
473 | point = vmin + (vmax - vmin) / (p1 - p0) * (pS - p0) |
|
352 | point = vmin + (vmax - vmin) / (p1 - p0) * (pS - p0) | |
474 | ax.cbar.norm.vmin = point - scale * (point - vmin) |
|
353 | ax.cbar.norm.vmin = point - scale * (point - vmin) | |
475 | ax.cbar.norm.vmax = point - scale * (point - vmax) |
|
354 | ax.cbar.norm.vmax = point - scale * (point - vmax) | |
476 | ax.plt.set_norm(ax.cbar.norm) |
|
355 | ax.plt.set_norm(ax.cbar.norm) | |
477 | ax.cbar.draw_all() |
|
356 | ax.cbar.draw_all() | |
478 | ax.cbar.patch.figure.canvas.draw() |
|
357 | ax.cbar.patch.figure.canvas.draw() | |
479 |
|
358 | |||
480 | def onBtnPress(self, event): |
|
359 | def onBtnPress(self, event): | |
481 | ''' |
|
360 | ''' | |
482 | Event for mouse button press |
|
361 | Event for mouse button press | |
483 | ''' |
|
362 | ''' | |
484 | cb_ax = event.inaxes |
|
363 | cb_ax = event.inaxes | |
485 | if cb_ax is None: |
|
364 | if cb_ax is None: | |
486 | return |
|
365 | return | |
487 |
|
366 | |||
488 | if cb_ax in [ax.cbar.ax for ax in self.axes if ax.cbar]: |
|
367 | if cb_ax in [ax.cbar.ax for ax in self.axes if ax.cbar]: | |
489 | cb_ax.press = event.x, event.y |
|
368 | cb_ax.press = event.x, event.y | |
490 | else: |
|
369 | else: | |
491 | cb_ax.press = None |
|
370 | cb_ax.press = None | |
492 |
|
371 | |||
493 | def onMotion(self, event): |
|
372 | def onMotion(self, event): | |
494 | ''' |
|
373 | ''' | |
495 | Event for move inside colorbar |
|
374 | Event for move inside colorbar | |
496 | ''' |
|
375 | ''' | |
497 | cb_ax = event.inaxes |
|
376 | cb_ax = event.inaxes | |
498 | if cb_ax is None: |
|
377 | if cb_ax is None: | |
499 | return |
|
378 | return | |
500 | if cb_ax not in [ax.cbar.ax for ax in self.axes if ax.cbar]: |
|
379 | if cb_ax not in [ax.cbar.ax for ax in self.axes if ax.cbar]: | |
501 | return |
|
380 | return | |
502 | if cb_ax.press is None: |
|
381 | if cb_ax.press is None: | |
503 | return |
|
382 | return | |
504 |
|
383 | |||
505 | ax = [ax for ax in self.axes if cb_ax == ax.cbar.ax][0] |
|
384 | ax = [ax for ax in self.axes if cb_ax == ax.cbar.ax][0] | |
506 | xprev, yprev = cb_ax.press |
|
385 | xprev, yprev = cb_ax.press | |
507 | dx = event.x - xprev |
|
386 | dx = event.x - xprev | |
508 | dy = event.y - yprev |
|
387 | dy = event.y - yprev | |
509 | cb_ax.press = event.x, event.y |
|
388 | cb_ax.press = event.x, event.y | |
510 | scale = ax.cbar.norm.vmax - ax.cbar.norm.vmin |
|
389 | scale = ax.cbar.norm.vmax - ax.cbar.norm.vmin | |
511 | perc = 0.03 |
|
390 | perc = 0.03 | |
512 |
|
391 | |||
513 | if event.button == 1: |
|
392 | if event.button == 1: | |
514 | ax.cbar.norm.vmin -= (perc * scale) * numpy.sign(dy) |
|
393 | ax.cbar.norm.vmin -= (perc * scale) * numpy.sign(dy) | |
515 | ax.cbar.norm.vmax -= (perc * scale) * numpy.sign(dy) |
|
394 | ax.cbar.norm.vmax -= (perc * scale) * numpy.sign(dy) | |
516 | elif event.button == 3: |
|
395 | elif event.button == 3: | |
517 | ax.cbar.norm.vmin -= (perc * scale) * numpy.sign(dy) |
|
396 | ax.cbar.norm.vmin -= (perc * scale) * numpy.sign(dy) | |
518 | ax.cbar.norm.vmax += (perc * scale) * numpy.sign(dy) |
|
397 | ax.cbar.norm.vmax += (perc * scale) * numpy.sign(dy) | |
519 |
|
398 | |||
520 | ax.cbar.draw_all() |
|
399 | ax.cbar.draw_all() | |
521 | ax.plt.set_norm(ax.cbar.norm) |
|
400 | ax.plt.set_norm(ax.cbar.norm) | |
522 | ax.cbar.patch.figure.canvas.draw() |
|
401 | ax.cbar.patch.figure.canvas.draw() | |
523 |
|
402 | |||
524 | def onBtnRelease(self, event): |
|
403 | def onBtnRelease(self, event): | |
525 | ''' |
|
404 | ''' | |
526 | Event for mouse button release |
|
405 | Event for mouse button release | |
527 | ''' |
|
406 | ''' | |
528 | cb_ax = event.inaxes |
|
407 | cb_ax = event.inaxes | |
529 | if cb_ax is not None: |
|
408 | if cb_ax is not None: | |
530 | cb_ax.press = None |
|
409 | cb_ax.press = None | |
531 |
|
410 | |||
532 | def __add_axes(self, ax, size='30%', pad='8%'): |
|
411 | def __add_axes(self, ax, size='30%', pad='8%'): | |
533 | ''' |
|
412 | ''' | |
534 | Add new axes to the given figure |
|
413 | Add new axes to the given figure | |
535 | ''' |
|
414 | ''' | |
536 | divider = make_axes_locatable(ax) |
|
415 | divider = make_axes_locatable(ax) | |
537 | nax = divider.new_horizontal(size=size, pad=pad) |
|
416 | nax = divider.new_horizontal(size=size, pad=pad) | |
538 | ax.figure.add_axes(nax) |
|
417 | ax.figure.add_axes(nax) | |
539 | return nax |
|
418 | return nax | |
540 |
|
419 | |||
541 | def setup(self): |
|
|||
542 | ''' |
|
|||
543 | This method should be implemented in the child class, the following |
|
|||
544 | attributes should be set: |
|
|||
545 |
|
||||
546 | self.nrows: number of rows |
|
|||
547 | self.ncols: number of cols |
|
|||
548 | self.nplots: number of plots (channels or pairs) |
|
|||
549 | self.ylabel: label for Y axes |
|
|||
550 | self.titles: list of axes title |
|
|||
551 |
|
||||
552 | ''' |
|
|||
553 | raise NotImplementedError |
|
|||
554 |
|
||||
555 | def fill_gaps(self, x_buffer, y_buffer, z_buffer): |
|
420 | def fill_gaps(self, x_buffer, y_buffer, z_buffer): | |
556 | ''' |
|
421 | ''' | |
557 | Create a masked array for missing data |
|
422 | Create a masked array for missing data | |
558 | ''' |
|
423 | ''' | |
559 | if x_buffer.shape[0] < 2: |
|
424 | if x_buffer.shape[0] < 2: | |
560 | return x_buffer, y_buffer, z_buffer |
|
425 | return x_buffer, y_buffer, z_buffer | |
561 |
|
426 | |||
562 | deltas = x_buffer[1:] - x_buffer[0:-1] |
|
427 | deltas = x_buffer[1:] - x_buffer[0:-1] | |
563 | x_median = numpy.median(deltas) |
|
428 | x_median = numpy.median(deltas) | |
564 |
|
429 | |||
565 | index = numpy.where(deltas > 5 * x_median) |
|
430 | index = numpy.where(deltas > 5 * x_median) | |
566 |
|
431 | |||
567 | if len(index[0]) != 0: |
|
432 | if len(index[0]) != 0: | |
568 | z_buffer[::, index[0], ::] = self.__missing |
|
433 | z_buffer[::, index[0], ::] = self.__missing | |
569 | z_buffer = numpy.ma.masked_inside(z_buffer, |
|
434 | z_buffer = numpy.ma.masked_inside(z_buffer, | |
570 | 0.99 * self.__missing, |
|
435 | 0.99 * self.__missing, | |
571 | 1.01 * self.__missing) |
|
436 | 1.01 * self.__missing) | |
572 |
|
437 | |||
573 | return x_buffer, y_buffer, z_buffer |
|
438 | return x_buffer, y_buffer, z_buffer | |
574 |
|
439 | |||
575 | def decimate(self): |
|
440 | def decimate(self): | |
576 |
|
441 | |||
577 | # dx = int(len(self.x)/self.__MAXNUMX) + 1 |
|
442 | # dx = int(len(self.x)/self.__MAXNUMX) + 1 | |
578 | dy = int(len(self.y) / self.decimation) + 1 |
|
443 | dy = int(len(self.y) / self.decimation) + 1 | |
579 |
|
444 | |||
580 | # x = self.x[::dx] |
|
445 | # x = self.x[::dx] | |
581 | x = self.x |
|
446 | x = self.x | |
582 | y = self.y[::dy] |
|
447 | y = self.y[::dy] | |
583 | z = self.z[::, ::, ::dy] |
|
448 | z = self.z[::, ::, ::dy] | |
584 |
|
449 | |||
585 | return x, y, z |
|
450 | return x, y, z | |
586 |
|
451 | |||
587 | def format(self): |
|
452 | def format(self): | |
588 | ''' |
|
453 | ''' | |
589 | Set min and max values, labels, ticks and titles |
|
454 | Set min and max values, labels, ticks and titles | |
590 | ''' |
|
455 | ''' | |
591 |
|
456 | |||
592 | if self.xmin is None: |
|
457 | if self.xmin is None: | |
593 | xmin = self.data.min_time |
|
458 | xmin = self.data.min_time | |
594 | else: |
|
459 | else: | |
595 | if self.xaxis is 'time': |
|
460 | if self.xaxis is 'time': | |
596 | dt = self.getDateTime(self.data.min_time) |
|
461 | dt = self.getDateTime(self.data.min_time) | |
597 | xmin = (dt.replace(hour=int(self.xmin), minute=0, second=0) - |
|
462 | xmin = (dt.replace(hour=int(self.xmin), minute=0, second=0) - | |
598 | datetime.datetime(1970, 1, 1)).total_seconds() |
|
463 | datetime.datetime(1970, 1, 1)).total_seconds() | |
599 | if self.data.localtime: |
|
464 | if self.data.localtime: | |
600 | xmin += time.timezone |
|
465 | xmin += time.timezone | |
601 | else: |
|
466 | else: | |
602 | xmin = self.xmin |
|
467 | xmin = self.xmin | |
603 |
|
468 | |||
604 | if self.xmax is None: |
|
469 | if self.xmax is None: | |
605 | xmax = xmin + self.xrange * 60 * 60 |
|
470 | xmax = xmin + self.xrange * 60 * 60 | |
606 | else: |
|
471 | else: | |
607 | if self.xaxis is 'time': |
|
472 | if self.xaxis is 'time': | |
608 | dt = self.getDateTime(self.data.max_time) |
|
473 | dt = self.getDateTime(self.data.max_time) | |
609 | xmax = (dt.replace(hour=int(self.xmax), minute=59, second=59) - |
|
474 | xmax = (dt.replace(hour=int(self.xmax), minute=59, second=59) - | |
610 | datetime.datetime(1970, 1, 1) + datetime.timedelta(seconds=1)).total_seconds() |
|
475 | datetime.datetime(1970, 1, 1) + datetime.timedelta(seconds=1)).total_seconds() | |
611 | if self.data.localtime: |
|
476 | if self.data.localtime: | |
612 | xmax += time.timezone |
|
477 | xmax += time.timezone | |
613 | else: |
|
478 | else: | |
614 | xmax = self.xmax |
|
479 | xmax = self.xmax | |
615 |
|
480 | |||
616 | ymin = self.ymin if self.ymin else numpy.nanmin(self.y) |
|
481 | ymin = self.ymin if self.ymin else numpy.nanmin(self.y) | |
617 | ymax = self.ymax if self.ymax else numpy.nanmax(self.y) |
|
482 | ymax = self.ymax if self.ymax else numpy.nanmax(self.y) | |
618 | #Y = numpy.array([1, 2, 5, 10, 20, 50, 100, 200, 500, 1000, 2000, 5000, 10000, 20000, 50000]) |
|
483 | #Y = numpy.array([1, 2, 5, 10, 20, 50, 100, 200, 500, 1000, 2000, 5000, 10000, 20000, 50000]) | |
619 |
|
484 | |||
620 | #i = 1 if numpy.where( |
|
485 | #i = 1 if numpy.where( | |
621 | # abs(ymax-ymin) <= Y)[0][0] < 0 else numpy.where(abs(ymax-ymin) <= Y)[0][0] |
|
486 | # abs(ymax-ymin) <= Y)[0][0] < 0 else numpy.where(abs(ymax-ymin) <= Y)[0][0] | |
622 | #ystep = Y[i] / 10. |
|
487 | #ystep = Y[i] / 10. | |
623 | dig = int(numpy.log10(ymax)) |
|
488 | dig = int(numpy.log10(ymax)) | |
624 | if dig == 0: |
|
489 | if dig == 0: | |
625 | digD = len(str(ymax)) - 2 |
|
490 | digD = len(str(ymax)) - 2 | |
626 | ydec = ymax*(10**digD) |
|
491 | ydec = ymax*(10**digD) | |
627 |
|
492 | |||
628 | dig = int(numpy.log10(ydec)) |
|
493 | dig = int(numpy.log10(ydec)) | |
629 | ystep = ((ydec + (10**(dig)))//10**(dig))*(10**(dig)) |
|
494 | ystep = ((ydec + (10**(dig)))//10**(dig))*(10**(dig)) | |
630 | ystep = ystep/5 |
|
495 | ystep = ystep/5 | |
631 | ystep = ystep/(10**digD) |
|
496 | ystep = ystep/(10**digD) | |
632 |
|
497 | |||
633 | else: |
|
498 | else: | |
634 | ystep = ((ymax + (10**(dig)))//10**(dig))*(10**(dig)) |
|
499 | ystep = ((ymax + (10**(dig)))//10**(dig))*(10**(dig)) | |
635 | ystep = ystep/5 |
|
500 | ystep = ystep/5 | |
636 |
|
501 | |||
637 | if self.xaxis is not 'time': |
|
502 | if self.xaxis is not 'time': | |
638 |
|
503 | |||
639 | dig = int(numpy.log10(xmax)) |
|
504 | dig = int(numpy.log10(xmax)) | |
640 |
|
505 | |||
641 | if dig <= 0: |
|
506 | if dig <= 0: | |
642 | digD = len(str(xmax)) - 2 |
|
507 | digD = len(str(xmax)) - 2 | |
643 | xdec = xmax*(10**digD) |
|
508 | xdec = xmax*(10**digD) | |
644 |
|
509 | |||
645 | dig = int(numpy.log10(xdec)) |
|
510 | dig = int(numpy.log10(xdec)) | |
646 | xstep = ((xdec + (10**(dig)))//10**(dig))*(10**(dig)) |
|
511 | xstep = ((xdec + (10**(dig)))//10**(dig))*(10**(dig)) | |
647 | xstep = xstep*0.5 |
|
512 | xstep = xstep*0.5 | |
648 | xstep = xstep/(10**digD) |
|
513 | xstep = xstep/(10**digD) | |
649 |
|
514 | |||
650 | else: |
|
515 | else: | |
651 | xstep = ((xmax + (10**(dig)))//10**(dig))*(10**(dig)) |
|
516 | xstep = ((xmax + (10**(dig)))//10**(dig))*(10**(dig)) | |
652 | xstep = xstep/5 |
|
517 | xstep = xstep/5 | |
653 |
|
518 | |||
654 | for n, ax in enumerate(self.axes): |
|
519 | for n, ax in enumerate(self.axes): | |
655 | if ax.firsttime: |
|
520 | if ax.firsttime: | |
656 | ax.set_facecolor(self.bgcolor) |
|
521 | ax.set_facecolor(self.bgcolor) | |
657 | ax.yaxis.set_major_locator(MultipleLocator(ystep)) |
|
522 | ax.yaxis.set_major_locator(MultipleLocator(ystep)) | |
658 | if self.xscale: |
|
523 | if self.xscale: | |
659 | ax.xaxis.set_major_formatter(FuncFormatter( |
|
524 | ax.xaxis.set_major_formatter(FuncFormatter( | |
660 | lambda x, pos: '{0:g}'.format(x*self.xscale))) |
|
525 | lambda x, pos: '{0:g}'.format(x*self.xscale))) | |
661 | if self.xscale: |
|
526 | if self.xscale: | |
662 | ax.yaxis.set_major_formatter(FuncFormatter( |
|
527 | ax.yaxis.set_major_formatter(FuncFormatter( | |
663 | lambda x, pos: '{0:g}'.format(x*self.yscale))) |
|
528 | lambda x, pos: '{0:g}'.format(x*self.yscale))) | |
664 | if self.xaxis is 'time': |
|
529 | if self.xaxis is 'time': | |
665 | ax.xaxis.set_major_formatter(FuncFormatter(self.__fmtTime)) |
|
530 | ax.xaxis.set_major_formatter(FuncFormatter(self.__fmtTime)) | |
666 | ax.xaxis.set_major_locator(LinearLocator(9)) |
|
531 | ax.xaxis.set_major_locator(LinearLocator(9)) | |
667 | else: |
|
532 | else: | |
668 | ax.xaxis.set_major_locator(MultipleLocator(xstep)) |
|
533 | ax.xaxis.set_major_locator(MultipleLocator(xstep)) | |
669 | if self.xlabel is not None: |
|
534 | if self.xlabel is not None: | |
670 | ax.set_xlabel(self.xlabel) |
|
535 | ax.set_xlabel(self.xlabel) | |
671 | ax.set_ylabel(self.ylabel) |
|
536 | ax.set_ylabel(self.ylabel) | |
672 | ax.firsttime = False |
|
537 | ax.firsttime = False | |
673 | if self.showprofile: |
|
538 | if self.showprofile: | |
674 | self.pf_axes[n].set_ylim(ymin, ymax) |
|
539 | self.pf_axes[n].set_ylim(ymin, ymax) | |
675 | self.pf_axes[n].set_xlim(self.zmin, self.zmax) |
|
540 | self.pf_axes[n].set_xlim(self.zmin, self.zmax) | |
676 | self.pf_axes[n].set_xlabel('dB') |
|
541 | self.pf_axes[n].set_xlabel('dB') | |
677 | self.pf_axes[n].grid(b=True, axis='x') |
|
542 | self.pf_axes[n].grid(b=True, axis='x') | |
678 | [tick.set_visible(False) |
|
543 | [tick.set_visible(False) | |
679 | for tick in self.pf_axes[n].get_yticklabels()] |
|
544 | for tick in self.pf_axes[n].get_yticklabels()] | |
680 | if self.colorbar: |
|
545 | if self.colorbar: | |
681 | ax.cbar = plt.colorbar( |
|
546 | ax.cbar = plt.colorbar( | |
682 | ax.plt, ax=ax, fraction=0.05, pad=0.02, aspect=10) |
|
547 | ax.plt, ax=ax, fraction=0.05, pad=0.02, aspect=10) | |
683 | ax.cbar.ax.tick_params(labelsize=8) |
|
548 | ax.cbar.ax.tick_params(labelsize=8) | |
684 | ax.cbar.ax.press = None |
|
549 | ax.cbar.ax.press = None | |
685 | if self.cb_label: |
|
550 | if self.cb_label: | |
686 | ax.cbar.set_label(self.cb_label, size=8) |
|
551 | ax.cbar.set_label(self.cb_label, size=8) | |
687 | elif self.cb_labels: |
|
552 | elif self.cb_labels: | |
688 | ax.cbar.set_label(self.cb_labels[n], size=8) |
|
553 | ax.cbar.set_label(self.cb_labels[n], size=8) | |
689 | else: |
|
554 | else: | |
690 | ax.cbar = None |
|
555 | ax.cbar = None | |
691 | if self.grid: |
|
556 | if self.grid: | |
692 | ax.grid(True) |
|
557 | ax.grid(True) | |
693 |
|
558 | |||
694 | if not self.polar: |
|
559 | if not self.polar: | |
695 | ax.set_xlim(xmin, xmax) |
|
560 | ax.set_xlim(xmin, xmax) | |
696 | ax.set_ylim(ymin, ymax) |
|
561 | ax.set_ylim(ymin, ymax) | |
697 | ax.set_title('{} {} {}'.format( |
|
562 | ax.set_title('{} {} {}'.format( | |
698 | self.titles[n], |
|
563 | self.titles[n], | |
699 | self.getDateTime(self.data.max_time).strftime( |
|
564 | self.getDateTime(self.data.max_time).strftime( | |
700 | '%H:%M:%S'), |
|
565 | '%H:%M:%S'), | |
701 | self.time_label), |
|
566 | self.time_label), | |
702 | size=8) |
|
567 | size=8) | |
703 | else: |
|
568 | else: | |
704 | ax.set_title('{}'.format(self.titles[n]), size=8) |
|
569 | ax.set_title('{}'.format(self.titles[n]), size=8) | |
705 | ax.set_ylim(0, 90) |
|
570 | ax.set_ylim(0, 90) | |
706 | ax.set_yticks(numpy.arange(0, 90, 20)) |
|
571 | ax.set_yticks(numpy.arange(0, 90, 20)) | |
707 | ax.yaxis.labelpad = 40 |
|
572 | ax.yaxis.labelpad = 40 | |
708 |
|
573 | |||
709 | def clear_figures(self): |
|
574 | def clear_figures(self): | |
710 | ''' |
|
575 | ''' | |
711 | Reset axes for redraw plots |
|
576 | Reset axes for redraw plots | |
712 | ''' |
|
577 | ''' | |
713 |
|
578 | |||
714 | for ax in self.axes: |
|
579 | for ax in self.axes: | |
715 | ax.clear() |
|
580 | ax.clear() | |
716 | ax.firsttime = True |
|
581 | ax.firsttime = True | |
717 | if ax.cbar: |
|
582 | if ax.cbar: | |
718 | ax.cbar.remove() |
|
583 | ax.cbar.remove() | |
719 |
|
584 | |||
720 | def __plot(self): |
|
585 | def __plot(self): | |
721 | ''' |
|
586 | ''' | |
722 | Main function to plot, format and save figures |
|
587 | Main function to plot, format and save figures | |
723 | ''' |
|
588 | ''' | |
724 |
|
589 | |||
725 |
|
|
590 | try: | |
726 | self.plot() |
|
591 | self.plot() | |
727 | self.format() |
|
592 | self.format() | |
728 |
|
|
593 | except Exception as e: | |
729 |
|
|
594 | log.warning('{} Plot could not be updated... check data'.format( | |
730 |
|
|
595 | self.CODE), self.name) | |
731 |
|
|
596 | log.error(str(e), '') | |
732 |
|
|
597 | return | |
733 |
|
598 | |||
734 | for n, fig in enumerate(self.figures): |
|
599 | for n, fig in enumerate(self.figures): | |
735 | if self.nrows == 0 or self.nplots == 0: |
|
600 | if self.nrows == 0 or self.nplots == 0: | |
736 | log.warning('No data', self.name) |
|
601 | log.warning('No data', self.name) | |
737 | fig.text(0.5, 0.5, 'No Data', fontsize='large', ha='center') |
|
602 | fig.text(0.5, 0.5, 'No Data', fontsize='large', ha='center') | |
738 | fig.canvas.manager.set_window_title(self.CODE) |
|
603 | fig.canvas.manager.set_window_title(self.CODE) | |
739 | continue |
|
604 | continue | |
740 |
|
605 | |||
741 | fig.tight_layout() |
|
606 | fig.tight_layout() | |
742 | fig.canvas.manager.set_window_title('{} - {}'.format(self.title, |
|
607 | fig.canvas.manager.set_window_title('{} - {}'.format(self.title, | |
743 | self.getDateTime(self.data.max_time).strftime('%Y/%m/%d'))) |
|
608 | self.getDateTime(self.data.max_time).strftime('%Y/%m/%d'))) | |
744 | fig.canvas.draw() |
|
609 | fig.canvas.draw() | |
745 |
|
610 | |||
746 | if self.save: |
|
611 | if self.save: | |
|
612 | self.save_figure(n) | |||
|
613 | ||||
|
614 | if self.plot_server: | |||
|
615 | self.send_to_server() | |||
|
616 | # t = Thread(target=self.send_to_server) | |||
|
617 | # t.start() | |||
747 |
|
618 | |||
748 | if self.save_labels: |
|
619 | def save_figure(self, n): | |
749 | labels = self.save_labels |
|
620 | ''' | |
750 | else: |
|
621 | ''' | |
751 | labels = list(range(self.nrows)) |
|
|||
752 |
|
622 | |||
753 | if self.oneFigure: |
|
623 | if self.save_counter < self.save_period: | |
754 | label = '' |
|
624 | self.save_counter += 1 | |
755 |
|
|
625 | return | |
756 | label = '-{}'.format(labels[n]) |
|
626 | ||
757 | figname = os.path.join( |
|
627 | self.save_counter = 1 | |
758 | self.save, |
|
628 | ||
|
629 | fig = self.figures[n] | |||
|
630 | ||||
|
631 | if self.save_labels: | |||
|
632 | labels = self.save_labels | |||
|
633 | else: | |||
|
634 | labels = list(range(self.nrows)) | |||
|
635 | ||||
|
636 | if self.oneFigure: | |||
|
637 | label = '' | |||
|
638 | else: | |||
|
639 | label = '-{}'.format(labels[n]) | |||
|
640 | figname = os.path.join( | |||
|
641 | self.save, | |||
|
642 | self.CODE, | |||
|
643 | '{}{}_{}.png'.format( | |||
|
644 | self.CODE, | |||
|
645 | label, | |||
|
646 | self.getDateTime(self.data.max_time).strftime( | |||
|
647 | '%Y%m%d_%H%M%S' | |||
|
648 | ), | |||
|
649 | ) | |||
|
650 | ) | |||
|
651 | log.log('Saving figure: {}'.format(figname), self.name) | |||
|
652 | if not os.path.isdir(os.path.dirname(figname)): | |||
|
653 | os.makedirs(os.path.dirname(figname)) | |||
|
654 | fig.savefig(figname) | |||
|
655 | ||||
|
656 | if self.realtime: | |||
|
657 | figname = os.path.join( | |||
|
658 | self.save, | |||
|
659 | '{}{}_{}.png'.format( | |||
759 | self.CODE, |
|
660 | self.CODE, | |
760 |
|
|
661 | label, | |
761 | self.CODE, |
|
662 | self.getDateTime(self.data.min_time).strftime( | |
762 |
|
|
663 | '%Y%m%d' | |
763 | self.getDateTime(self.data.max_time).strftime( |
|
664 | ), | |
764 | '%Y%m%d_%H%M%S'), |
|
|||
765 | ) |
|
665 | ) | |
766 | ) |
|
666 | ) | |
767 | log.log('Saving figure: {}'.format(figname), self.name) |
|
667 | fig.savefig(figname) | |
768 | if not os.path.isdir(os.path.dirname(figname)): |
|
668 | ||
769 | os.makedirs(os.path.dirname(figname)) |
|
669 | def send_to_server(self): | |
770 | fig.savefig(figname) |
|
670 | ''' | |
|
671 | ''' | |||
|
672 | ||||
|
673 | if self.sender_counter < self.sender_period: | |||
|
674 | self.sender_counter += 1 | |||
|
675 | ||||
|
676 | self.sender_counter = 1 | |||
|
677 | ||||
|
678 | retries = 2 | |||
|
679 | while True: | |||
|
680 | self.socket.send_string(self.data.jsonify()) | |||
|
681 | socks = dict(self.poll.poll(5000)) | |||
|
682 | if socks.get(self.socket) == zmq.POLLIN: | |||
|
683 | reply = self.socket.recv_string() | |||
|
684 | if reply == 'ok': | |||
|
685 | log.log("Response from server ok", self.name) | |||
|
686 | break | |||
|
687 | else: | |||
|
688 | log.warning( | |||
|
689 | "Malformed reply from server: {}".format(reply), self.name) | |||
|
690 | ||||
|
691 | else: | |||
|
692 | log.warning( | |||
|
693 | "No response from server, retrying...", self.name) | |||
|
694 | self.socket.setsockopt(zmq.LINGER, 0) | |||
|
695 | self.socket.close() | |||
|
696 | self.poll.unregister(self.socket) | |||
|
697 | retries -= 1 | |||
|
698 | if retries == 0: | |||
|
699 | log.error( | |||
|
700 | "Server seems to be offline, abandoning", self.name) | |||
|
701 | self.socket = self.context.socket(zmq.REQ) | |||
|
702 | self.socket.connect(self.plot_server) | |||
|
703 | self.poll.register(self.socket, zmq.POLLIN) | |||
|
704 | time.sleep(1) | |||
|
705 | break | |||
|
706 | self.socket = self.context.socket(zmq.REQ) | |||
|
707 | self.socket.connect(self.plot_server) | |||
|
708 | self.poll.register(self.socket, zmq.POLLIN) | |||
|
709 | time.sleep(0.5) | |||
|
710 | ||||
|
711 | def setup(self): | |||
|
712 | ''' | |||
|
713 | This method should be implemented in the child class, the following | |||
|
714 | attributes should be set: | |||
|
715 | ||||
|
716 | self.nrows: number of rows | |||
|
717 | self.ncols: number of cols | |||
|
718 | self.nplots: number of plots (channels or pairs) | |||
|
719 | self.ylabel: label for Y axes | |||
|
720 | self.titles: list of axes title | |||
|
721 | ||||
|
722 | ''' | |||
|
723 | raise NotImplementedError | |||
771 |
|
724 | |||
772 | def plot(self): |
|
725 | def plot(self): | |
773 | ''' |
|
726 | ''' | |
774 | Must be defined in the child class |
|
727 | Must be defined in the child class | |
775 | ''' |
|
728 | ''' | |
776 | raise NotImplementedError |
|
729 | raise NotImplementedError | |
777 |
|
730 | |||
778 | def run(self, dataOut, **kwargs): |
|
731 | def run(self, dataOut, **kwargs): | |
779 |
|
732 | |||
780 | if dataOut.error: |
|
733 | if dataOut.error: | |
781 | coerce = True |
|
734 | coerce = True | |
782 | else: |
|
735 | else: | |
783 | coerce = False |
|
736 | coerce = False | |
784 |
|
737 | |||
785 | if self.isConfig is False: |
|
738 | if self.isConfig is False: | |
786 | self.__setup(**kwargs) |
|
739 | self.__setup(**kwargs) | |
787 | self.data.setup() |
|
740 | self.data.setup() | |
788 | self.isConfig = True |
|
741 | self.isConfig = True | |
|
742 | if self.plot_server: | |||
|
743 | self.context = zmq.Context() | |||
|
744 | self.socket = self.context.socket(zmq.REQ) | |||
|
745 | self.socket.connect(self.plot_server) | |||
|
746 | self.poll = zmq.Poller() | |||
|
747 | self.poll.register(self.socket, zmq.POLLIN) | |||
789 |
|
748 | |||
790 | if dataOut.type == 'Parameters': |
|
749 | if dataOut.type == 'Parameters': | |
791 | tm = dataOut.utctimeInit |
|
750 | tm = dataOut.utctimeInit | |
792 | else: |
|
751 | else: | |
793 | tm = dataOut.utctime |
|
752 | tm = dataOut.utctime | |
794 |
|
753 | |||
795 | if dataOut.useLocalTime: |
|
754 | if dataOut.useLocalTime: | |
796 | if not self.localtime: |
|
755 | if not self.localtime: | |
797 | tm += time.timezone |
|
756 | tm += time.timezone | |
798 | else: |
|
757 | else: | |
799 | if self.localtime: |
|
758 | if self.localtime: | |
800 | tm -= time.timezone |
|
759 | tm -= time.timezone | |
801 |
|
760 | |||
802 | if self.data and (tm - self.data.min_time) >= self.xrange*60*60: |
|
761 | if self.data and (tm - self.data.min_time) >= self.xrange*60*60: | |
803 | self.__plot() |
|
762 | self.__plot() | |
804 | self.data.setup() |
|
763 | self.data.setup() | |
805 | self.clear_figures() |
|
764 | self.clear_figures() | |
806 |
|
765 | |||
807 | self.data.update(dataOut, tm) |
|
766 | self.data.update(dataOut, tm) | |
808 |
|
767 | |||
809 | if self.isPlotConfig is False: |
|
768 | if self.isPlotConfig is False: | |
810 | self.__setup_plot() |
|
769 | self.__setup_plot() | |
811 | self.isPlotConfig = True |
|
770 | self.isPlotConfig = True | |
812 |
|
771 | |||
813 | if self.realtime: |
|
772 | if self.realtime: | |
814 | self.__plot() |
|
773 | self.__plot() | |
815 | else: |
|
774 | else: | |
816 | self.__throttle_plot(self.__plot, coerce=coerce) |
|
775 | self.__throttle_plot(self.__plot, coerce=coerce) | |
817 |
|
776 | |||
818 | figpause(0.001) |
|
777 | figpause(0.001) | |
819 |
|
778 | |||
820 | def close(self): |
|
779 | def close(self): | |
821 |
|
780 | |||
822 | if self.data and self.pause: |
|
781 | if self.data and self.pause: | |
823 | figpause(10) |
|
782 | figpause(10) | |
824 |
|
783 |
@@ -1,390 +1,390 | |||||
1 | ''' |
|
1 | ''' | |
2 | Updated for multiprocessing |
|
2 | Updated for multiprocessing | |
3 | Author : Sergio Cortez |
|
3 | Author : Sergio Cortez | |
4 | Jan 2018 |
|
4 | Jan 2018 | |
5 | Abstract: |
|
5 | Abstract: | |
6 | Base class for processing units and operations. A decorator provides multiprocessing features and interconnect the processes created. |
|
6 | Base class for processing units and operations. A decorator provides multiprocessing features and interconnect the processes created. | |
7 | The argument (kwargs) sent from the controller is parsed and filtered via the decorator for each processing unit or operation instantiated. |
|
7 | The argument (kwargs) sent from the controller is parsed and filtered via the decorator for each processing unit or operation instantiated. | |
8 | The decorator handle also the methods inside the processing unit to be called from the main script (not as operations) (OPERATION -> type ='self'). |
|
8 | The decorator handle also the methods inside the processing unit to be called from the main script (not as operations) (OPERATION -> type ='self'). | |
9 |
|
9 | |||
10 | Based on: |
|
10 | Based on: | |
11 | $Author: murco $ |
|
11 | $Author: murco $ | |
12 | $Id: jroproc_base.py 1 2012-11-12 18:56:07Z murco $ |
|
12 | $Id: jroproc_base.py 1 2012-11-12 18:56:07Z murco $ | |
13 | ''' |
|
13 | ''' | |
14 |
|
14 | |||
|
15 | import os | |||
15 | import inspect |
|
16 | import inspect | |
16 | import zmq |
|
17 | import zmq | |
17 | import time |
|
18 | import time | |
18 | import pickle |
|
19 | import pickle | |
19 | import os |
|
|||
20 | from multiprocessing import Process |
|
20 | from multiprocessing import Process | |
21 | from zmq.utils.monitor import recv_monitor_message |
|
21 | from zmq.utils.monitor import recv_monitor_message | |
22 |
|
22 | |||
23 | from schainpy.utils import log |
|
23 | from schainpy.utils import log | |
24 |
|
24 | |||
25 |
|
25 | |||
26 | class ProcessingUnit(object): |
|
26 | class ProcessingUnit(object): | |
27 |
|
27 | |||
28 | """ |
|
28 | """ | |
29 | Update - Jan 2018 - MULTIPROCESSING |
|
29 | Update - Jan 2018 - MULTIPROCESSING | |
30 | All the "call" methods present in the previous base were removed. |
|
30 | All the "call" methods present in the previous base were removed. | |
31 | The majority of operations are independant processes, thus |
|
31 | The majority of operations are independant processes, thus | |
32 | the decorator is in charge of communicate the operation processes |
|
32 | the decorator is in charge of communicate the operation processes | |
33 | with the proccessing unit via IPC. |
|
33 | with the proccessing unit via IPC. | |
34 |
|
34 | |||
35 | The constructor does not receive any argument. The remaining methods |
|
35 | The constructor does not receive any argument. The remaining methods | |
36 | are related with the operations to execute. |
|
36 | are related with the operations to execute. | |
37 |
|
37 | |||
38 |
|
38 | |||
39 | """ |
|
39 | """ | |
40 |
|
40 | |||
41 | def __init__(self): |
|
41 | def __init__(self): | |
42 |
|
42 | |||
43 | self.dataIn = None |
|
43 | self.dataIn = None | |
44 | self.dataOut = None |
|
44 | self.dataOut = None | |
45 | self.isConfig = False |
|
45 | self.isConfig = False | |
46 | self.operations = [] |
|
46 | self.operations = [] | |
47 | self.plots = [] |
|
47 | self.plots = [] | |
48 |
|
48 | |||
49 | def getAllowedArgs(self): |
|
49 | def getAllowedArgs(self): | |
50 | if hasattr(self, '__attrs__'): |
|
50 | if hasattr(self, '__attrs__'): | |
51 | return self.__attrs__ |
|
51 | return self.__attrs__ | |
52 | else: |
|
52 | else: | |
53 | return inspect.getargspec(self.run).args |
|
53 | return inspect.getargspec(self.run).args | |
54 |
|
54 | |||
55 | def addOperation(self, conf, operation): |
|
55 | def addOperation(self, conf, operation): | |
56 | """ |
|
56 | """ | |
57 | This method is used in the controller, and update the dictionary containing the operations to execute. The dict |
|
57 | This method is used in the controller, and update the dictionary containing the operations to execute. The dict | |
58 | posses the id of the operation process (IPC purposes) |
|
58 | posses the id of the operation process (IPC purposes) | |
59 |
|
59 | |||
60 | Agrega un objeto del tipo "Operation" (opObj) a la lista de objetos "self.objectList" y retorna el |
|
60 | Agrega un objeto del tipo "Operation" (opObj) a la lista de objetos "self.objectList" y retorna el | |
61 | identificador asociado a este objeto. |
|
61 | identificador asociado a este objeto. | |
62 |
|
62 | |||
63 | Input: |
|
63 | Input: | |
64 |
|
64 | |||
65 | object : objeto de la clase "Operation" |
|
65 | object : objeto de la clase "Operation" | |
66 |
|
66 | |||
67 | Return: |
|
67 | Return: | |
68 |
|
68 | |||
69 | objId : identificador del objeto, necesario para comunicar con master(procUnit) |
|
69 | objId : identificador del objeto, necesario para comunicar con master(procUnit) | |
70 | """ |
|
70 | """ | |
71 |
|
71 | |||
72 | self.operations.append( |
|
72 | self.operations.append( | |
73 | (operation, conf.type, conf.id, conf.getKwargs())) |
|
73 | (operation, conf.type, conf.id, conf.getKwargs())) | |
74 |
|
74 | |||
75 | if 'plot' in self.name.lower(): |
|
75 | if 'plot' in self.name.lower(): | |
76 | self.plots.append(operation.CODE) |
|
76 | self.plots.append(operation.CODE) | |
77 |
|
77 | |||
78 | def getOperationObj(self, objId): |
|
78 | def getOperationObj(self, objId): | |
79 |
|
79 | |||
80 | if objId not in list(self.operations.keys()): |
|
80 | if objId not in list(self.operations.keys()): | |
81 | return None |
|
81 | return None | |
82 |
|
82 | |||
83 | return self.operations[objId] |
|
83 | return self.operations[objId] | |
84 |
|
84 | |||
85 | def operation(self, **kwargs): |
|
85 | def operation(self, **kwargs): | |
86 | """ |
|
86 | """ | |
87 | Operacion directa sobre la data (dataOut.data). Es necesario actualizar los valores de los |
|
87 | Operacion directa sobre la data (dataOut.data). Es necesario actualizar los valores de los | |
88 | atributos del objeto dataOut |
|
88 | atributos del objeto dataOut | |
89 |
|
89 | |||
90 | Input: |
|
90 | Input: | |
91 |
|
91 | |||
92 | **kwargs : Diccionario de argumentos de la funcion a ejecutar |
|
92 | **kwargs : Diccionario de argumentos de la funcion a ejecutar | |
93 | """ |
|
93 | """ | |
94 |
|
94 | |||
95 | raise NotImplementedError |
|
95 | raise NotImplementedError | |
96 |
|
96 | |||
97 | def setup(self): |
|
97 | def setup(self): | |
98 |
|
98 | |||
99 | raise NotImplementedError |
|
99 | raise NotImplementedError | |
100 |
|
100 | |||
101 | def run(self): |
|
101 | def run(self): | |
102 |
|
102 | |||
103 | raise NotImplementedError |
|
103 | raise NotImplementedError | |
104 |
|
104 | |||
105 | def close(self): |
|
105 | def close(self): | |
106 |
|
106 | |||
107 | return |
|
107 | return | |
108 |
|
108 | |||
109 |
|
109 | |||
110 | class Operation(object): |
|
110 | class Operation(object): | |
111 |
|
111 | |||
112 | """ |
|
112 | """ | |
113 | Update - Jan 2018 - MULTIPROCESSING |
|
113 | Update - Jan 2018 - MULTIPROCESSING | |
114 |
|
114 | |||
115 | Most of the methods remained the same. The decorator parse the arguments and executed the run() method for each process. |
|
115 | Most of the methods remained the same. The decorator parse the arguments and executed the run() method for each process. | |
116 | The constructor doe snot receive any argument, neither the baseclass. |
|
116 | The constructor doe snot receive any argument, neither the baseclass. | |
117 |
|
117 | |||
118 |
|
118 | |||
119 | Clase base para definir las operaciones adicionales que se pueden agregar a la clase ProcessingUnit |
|
119 | Clase base para definir las operaciones adicionales que se pueden agregar a la clase ProcessingUnit | |
120 | y necesiten acumular informacion previa de los datos a procesar. De preferencia usar un buffer de |
|
120 | y necesiten acumular informacion previa de los datos a procesar. De preferencia usar un buffer de | |
121 | acumulacion dentro de esta clase |
|
121 | acumulacion dentro de esta clase | |
122 |
|
122 | |||
123 | Ejemplo: Integraciones coherentes, necesita la informacion previa de los n perfiles anteriores (bufffer) |
|
123 | Ejemplo: Integraciones coherentes, necesita la informacion previa de los n perfiles anteriores (bufffer) | |
124 |
|
124 | |||
125 | """ |
|
125 | """ | |
126 |
|
126 | |||
127 | def __init__(self): |
|
127 | def __init__(self): | |
128 |
|
128 | |||
129 | self.id = None |
|
129 | self.id = None | |
130 | self.isConfig = False |
|
130 | self.isConfig = False | |
131 |
|
131 | |||
132 | if not hasattr(self, 'name'): |
|
132 | if not hasattr(self, 'name'): | |
133 | self.name = self.__class__.__name__ |
|
133 | self.name = self.__class__.__name__ | |
134 |
|
134 | |||
135 | def getAllowedArgs(self): |
|
135 | def getAllowedArgs(self): | |
136 | if hasattr(self, '__attrs__'): |
|
136 | if hasattr(self, '__attrs__'): | |
137 | return self.__attrs__ |
|
137 | return self.__attrs__ | |
138 | else: |
|
138 | else: | |
139 | return inspect.getargspec(self.run).args |
|
139 | return inspect.getargspec(self.run).args | |
140 |
|
140 | |||
141 | def setup(self): |
|
141 | def setup(self): | |
142 |
|
142 | |||
143 | self.isConfig = True |
|
143 | self.isConfig = True | |
144 |
|
144 | |||
145 | raise NotImplementedError |
|
145 | raise NotImplementedError | |
146 |
|
146 | |||
147 | def run(self, dataIn, **kwargs): |
|
147 | def run(self, dataIn, **kwargs): | |
148 | """ |
|
148 | """ | |
149 | Realiza las operaciones necesarias sobre la dataIn.data y actualiza los |
|
149 | Realiza las operaciones necesarias sobre la dataIn.data y actualiza los | |
150 | atributos del objeto dataIn. |
|
150 | atributos del objeto dataIn. | |
151 |
|
151 | |||
152 | Input: |
|
152 | Input: | |
153 |
|
153 | |||
154 | dataIn : objeto del tipo JROData |
|
154 | dataIn : objeto del tipo JROData | |
155 |
|
155 | |||
156 | Return: |
|
156 | Return: | |
157 |
|
157 | |||
158 | None |
|
158 | None | |
159 |
|
159 | |||
160 | Affected: |
|
160 | Affected: | |
161 | __buffer : buffer de recepcion de datos. |
|
161 | __buffer : buffer de recepcion de datos. | |
162 |
|
162 | |||
163 | """ |
|
163 | """ | |
164 | if not self.isConfig: |
|
164 | if not self.isConfig: | |
165 | self.setup(**kwargs) |
|
165 | self.setup(**kwargs) | |
166 |
|
166 | |||
167 | raise NotImplementedError |
|
167 | raise NotImplementedError | |
168 |
|
168 | |||
169 | def close(self): |
|
169 | def close(self): | |
170 |
|
170 | |||
171 | return |
|
171 | return | |
172 |
|
172 | |||
173 |
|
173 | |||
174 | def MPDecorator(BaseClass): |
|
174 | def MPDecorator(BaseClass): | |
175 | """ |
|
175 | """ | |
176 | Multiprocessing class decorator |
|
176 | Multiprocessing class decorator | |
177 |
|
177 | |||
178 | This function add multiprocessing features to a BaseClass. Also, it handle |
|
178 | This function add multiprocessing features to a BaseClass. Also, it handle | |
179 | the communication beetween processes (readers, procUnits and operations). |
|
179 | the communication beetween processes (readers, procUnits and operations). | |
180 | """ |
|
180 | """ | |
181 |
|
181 | |||
182 | class MPClass(BaseClass, Process): |
|
182 | class MPClass(BaseClass, Process): | |
183 |
|
183 | |||
184 | def __init__(self, *args, **kwargs): |
|
184 | def __init__(self, *args, **kwargs): | |
185 | super(MPClass, self).__init__() |
|
185 | super(MPClass, self).__init__() | |
186 | Process.__init__(self) |
|
186 | Process.__init__(self) | |
187 | self.operationKwargs = {} |
|
187 | self.operationKwargs = {} | |
188 | self.args = args |
|
188 | self.args = args | |
189 | self.kwargs = kwargs |
|
189 | self.kwargs = kwargs | |
190 | self.sender = None |
|
190 | self.sender = None | |
191 | self.receiver = None |
|
191 | self.receiver = None | |
192 | self.name = BaseClass.__name__ |
|
192 | self.name = BaseClass.__name__ | |
193 | if 'plot' in self.name.lower() and not self.name.endswith('_'): |
|
193 | if 'plot' in self.name.lower() and not self.name.endswith('_'): | |
194 | self.name = '{}{}'.format(self.CODE.upper(), 'Plot') |
|
194 | self.name = '{}{}'.format(self.CODE.upper(), 'Plot') | |
195 | self.start_time = time.time() |
|
195 | self.start_time = time.time() | |
196 |
|
196 | |||
197 | if len(self.args) is 3: |
|
197 | if len(self.args) is 3: | |
198 | self.typeProc = "ProcUnit" |
|
198 | self.typeProc = "ProcUnit" | |
199 | self.id = args[0] |
|
199 | self.id = args[0] | |
200 | self.inputId = args[1] |
|
200 | self.inputId = args[1] | |
201 | self.project_id = args[2] |
|
201 | self.project_id = args[2] | |
202 | elif len(self.args) is 2: |
|
202 | elif len(self.args) is 2: | |
203 | self.id = args[0] |
|
203 | self.id = args[0] | |
204 | self.inputId = args[0] |
|
204 | self.inputId = args[0] | |
205 | self.project_id = args[1] |
|
205 | self.project_id = args[1] | |
206 | self.typeProc = "Operation" |
|
206 | self.typeProc = "Operation" | |
207 |
|
207 | |||
208 | def subscribe(self): |
|
208 | def subscribe(self): | |
209 | ''' |
|
209 | ''' | |
210 | This function create a socket to receive objects from the |
|
210 | This function create a socket to receive objects from the | |
211 | topic `inputId`. |
|
211 | topic `inputId`. | |
212 | ''' |
|
212 | ''' | |
213 |
|
213 | |||
214 | c = zmq.Context() |
|
214 | c = zmq.Context() | |
215 | self.receiver = c.socket(zmq.SUB) |
|
215 | self.receiver = c.socket(zmq.SUB) | |
216 | self.receiver.connect( |
|
216 | self.receiver.connect( | |
217 | 'ipc:///tmp/schain/{}_pub'.format(self.project_id)) |
|
217 | 'ipc:///tmp/schain/{}_pub'.format(self.project_id)) | |
218 | self.receiver.setsockopt(zmq.SUBSCRIBE, self.inputId.encode()) |
|
218 | self.receiver.setsockopt(zmq.SUBSCRIBE, self.inputId.encode()) | |
219 |
|
219 | |||
220 | def listen(self): |
|
220 | def listen(self): | |
221 | ''' |
|
221 | ''' | |
222 | This function waits for objects and deserialize using pickle |
|
222 | This function waits for objects and deserialize using pickle | |
223 | ''' |
|
223 | ''' | |
224 |
|
224 | |||
225 | data = pickle.loads(self.receiver.recv_multipart()[1]) |
|
225 | data = pickle.loads(self.receiver.recv_multipart()[1]) | |
226 |
|
226 | |||
227 | return data |
|
227 | return data | |
228 |
|
228 | |||
229 | def set_publisher(self): |
|
229 | def set_publisher(self): | |
230 | ''' |
|
230 | ''' | |
231 | This function create a socket for publishing purposes. |
|
231 | This function create a socket for publishing purposes. | |
232 | ''' |
|
232 | ''' | |
233 |
|
233 | |||
234 | time.sleep(1) |
|
234 | time.sleep(1) | |
235 | c = zmq.Context() |
|
235 | c = zmq.Context() | |
236 | self.sender = c.socket(zmq.PUB) |
|
236 | self.sender = c.socket(zmq.PUB) | |
237 | self.sender.connect( |
|
237 | self.sender.connect( | |
238 | 'ipc:///tmp/schain/{}_sub'.format(self.project_id)) |
|
238 | 'ipc:///tmp/schain/{}_sub'.format(self.project_id)) | |
239 |
|
239 | |||
240 | def publish(self, data, id): |
|
240 | def publish(self, data, id): | |
241 | ''' |
|
241 | ''' | |
242 | This function publish an object, to a specific topic. |
|
242 | This function publish an object, to a specific topic. | |
243 | ''' |
|
243 | ''' | |
244 | self.sender.send_multipart([str(id).encode(), pickle.dumps(data)]) |
|
244 | self.sender.send_multipart([str(id).encode(), pickle.dumps(data)]) | |
245 |
|
245 | |||
246 | def runReader(self): |
|
246 | def runReader(self): | |
247 | ''' |
|
247 | ''' | |
248 | Run fuction for read units |
|
248 | Run fuction for read units | |
249 | ''' |
|
249 | ''' | |
250 | while True: |
|
250 | while True: | |
251 |
|
251 | |||
252 | BaseClass.run(self, **self.kwargs) |
|
252 | BaseClass.run(self, **self.kwargs) | |
253 |
|
253 | |||
254 | for op, optype, opId, kwargs in self.operations: |
|
254 | for op, optype, opId, kwargs in self.operations: | |
255 | if optype == 'self' and not self.dataOut.flagNoData: |
|
255 | if optype == 'self' and not self.dataOut.flagNoData: | |
256 | op(**kwargs) |
|
256 | op(**kwargs) | |
257 | elif optype == 'other' and not self.dataOut.flagNoData: |
|
257 | elif optype == 'other' and not self.dataOut.flagNoData: | |
258 | self.dataOut = op.run(self.dataOut, **self.kwargs) |
|
258 | self.dataOut = op.run(self.dataOut, **self.kwargs) | |
259 | elif optype == 'external': |
|
259 | elif optype == 'external': | |
260 | self.publish(self.dataOut, opId) |
|
260 | self.publish(self.dataOut, opId) | |
261 |
|
261 | |||
262 | if self.dataOut.flagNoData and not self.dataOut.error: |
|
262 | if self.dataOut.flagNoData and not self.dataOut.error: | |
263 | continue |
|
263 | continue | |
264 |
|
264 | |||
265 | self.publish(self.dataOut, self.id) |
|
265 | self.publish(self.dataOut, self.id) | |
266 |
|
266 | |||
267 | if self.dataOut.error: |
|
267 | if self.dataOut.error: | |
268 | log.error(self.dataOut.error, self.name) |
|
268 | log.error(self.dataOut.error, self.name) | |
269 | # self.sender.send_multipart([str(self.project_id).encode(), 'end'.encode()]) |
|
269 | # self.sender.send_multipart([str(self.project_id).encode(), 'end'.encode()]) | |
270 | break |
|
270 | break | |
271 |
|
271 | |||
272 | time.sleep(1) |
|
272 | time.sleep(1) | |
273 |
|
273 | |||
274 | def runProc(self): |
|
274 | def runProc(self): | |
275 | ''' |
|
275 | ''' | |
276 | Run function for proccessing units |
|
276 | Run function for proccessing units | |
277 | ''' |
|
277 | ''' | |
278 |
|
278 | |||
279 | while True: |
|
279 | while True: | |
280 | self.dataIn = self.listen() |
|
280 | self.dataIn = self.listen() | |
281 |
|
281 | |||
282 | if self.dataIn.flagNoData and self.dataIn.error is None: |
|
282 | if self.dataIn.flagNoData and self.dataIn.error is None: | |
283 | continue |
|
283 | continue | |
284 |
|
284 | |||
285 | BaseClass.run(self, **self.kwargs) |
|
285 | BaseClass.run(self, **self.kwargs) | |
286 |
|
286 | |||
287 | if self.dataIn.error: |
|
287 | if self.dataIn.error: | |
288 | self.dataOut.error = self.dataIn.error |
|
288 | self.dataOut.error = self.dataIn.error | |
289 | self.dataOut.flagNoData = True |
|
289 | self.dataOut.flagNoData = True | |
290 |
|
290 | |||
291 | for op, optype, opId, kwargs in self.operations: |
|
291 | for op, optype, opId, kwargs in self.operations: | |
292 | if optype == 'self' and not self.dataOut.flagNoData: |
|
292 | if optype == 'self' and not self.dataOut.flagNoData: | |
293 | op(**kwargs) |
|
293 | op(**kwargs) | |
294 | elif optype == 'other' and not self.dataOut.flagNoData: |
|
294 | elif optype == 'other' and not self.dataOut.flagNoData: | |
295 | self.dataOut = op.run(self.dataOut, **kwargs) |
|
295 | self.dataOut = op.run(self.dataOut, **kwargs) | |
296 | elif optype == 'external' and not self.dataOut.flagNoData: |
|
296 | elif optype == 'external' and not self.dataOut.flagNoData: | |
297 | self.publish(self.dataOut, opId) |
|
297 | self.publish(self.dataOut, opId) | |
298 |
|
298 | |||
299 | if not self.dataOut.flagNoData or self.dataOut.error: |
|
299 | if not self.dataOut.flagNoData or self.dataOut.error: | |
300 | self.publish(self.dataOut, self.id) |
|
300 | self.publish(self.dataOut, self.id) | |
301 | for op, optype, opId, kwargs in self.operations: |
|
301 | for op, optype, opId, kwargs in self.operations: | |
302 | if optype == 'self' and self.dataOut.error: |
|
302 | if optype == 'self' and self.dataOut.error: | |
303 | op(**kwargs) |
|
303 | op(**kwargs) | |
304 | elif optype == 'other' and self.dataOut.error: |
|
304 | elif optype == 'other' and self.dataOut.error: | |
305 | self.dataOut = op.run(self.dataOut, **kwargs) |
|
305 | self.dataOut = op.run(self.dataOut, **kwargs) | |
306 | elif optype == 'external' and self.dataOut.error: |
|
306 | elif optype == 'external' and self.dataOut.error: | |
307 | self.publish(self.dataOut, opId) |
|
307 | self.publish(self.dataOut, opId) | |
308 |
|
308 | |||
309 | if self.dataIn.error: |
|
309 | if self.dataIn.error: | |
310 | break |
|
310 | break | |
311 |
|
311 | |||
312 | time.sleep(1) |
|
312 | time.sleep(1) | |
313 |
|
313 | |||
314 | def runOp(self): |
|
314 | def runOp(self): | |
315 | ''' |
|
315 | ''' | |
316 | Run function for external operations (this operations just receive data |
|
316 | Run function for external operations (this operations just receive data | |
317 | ex: plots, writers, publishers) |
|
317 | ex: plots, writers, publishers) | |
318 | ''' |
|
318 | ''' | |
319 |
|
319 | |||
320 | while True: |
|
320 | while True: | |
321 |
|
321 | |||
322 | dataOut = self.listen() |
|
322 | dataOut = self.listen() | |
323 |
|
323 | |||
324 | BaseClass.run(self, dataOut, **self.kwargs) |
|
324 | BaseClass.run(self, dataOut, **self.kwargs) | |
325 |
|
325 | |||
326 | if dataOut.error: |
|
326 | if dataOut.error: | |
327 | break |
|
327 | break | |
328 |
|
328 | |||
329 | time.sleep(1) |
|
329 | time.sleep(1) | |
330 |
|
330 | |||
331 | def run(self): |
|
331 | def run(self): | |
332 | if self.typeProc is "ProcUnit": |
|
332 | if self.typeProc is "ProcUnit": | |
333 |
|
333 | |||
334 | if self.inputId is not None: |
|
334 | if self.inputId is not None: | |
335 |
|
335 | |||
336 | self.subscribe() |
|
336 | self.subscribe() | |
337 |
|
337 | |||
338 | self.set_publisher() |
|
338 | self.set_publisher() | |
339 |
|
339 | |||
340 | if 'Reader' not in BaseClass.__name__: |
|
340 | if 'Reader' not in BaseClass.__name__: | |
341 | self.runProc() |
|
341 | self.runProc() | |
342 | else: |
|
342 | else: | |
343 | self.runReader() |
|
343 | self.runReader() | |
344 |
|
344 | |||
345 | elif self.typeProc is "Operation": |
|
345 | elif self.typeProc is "Operation": | |
346 |
|
346 | |||
347 | self.subscribe() |
|
347 | self.subscribe() | |
348 | self.runOp() |
|
348 | self.runOp() | |
349 |
|
349 | |||
350 | else: |
|
350 | else: | |
351 | raise ValueError("Unknown type") |
|
351 | raise ValueError("Unknown type") | |
352 |
|
352 | |||
353 | self.close() |
|
353 | self.close() | |
354 |
|
354 | |||
355 | def event_monitor(self, monitor): |
|
355 | def event_monitor(self, monitor): | |
356 |
|
356 | |||
357 | events = {} |
|
357 | events = {} | |
358 |
|
358 | |||
359 | for name in dir(zmq): |
|
359 | for name in dir(zmq): | |
360 | if name.startswith('EVENT_'): |
|
360 | if name.startswith('EVENT_'): | |
361 | value = getattr(zmq, name) |
|
361 | value = getattr(zmq, name) | |
362 | events[value] = name |
|
362 | events[value] = name | |
363 |
|
363 | |||
364 | while monitor.poll(): |
|
364 | while monitor.poll(): | |
365 | evt = recv_monitor_message(monitor) |
|
365 | evt = recv_monitor_message(monitor) | |
366 | if evt['event'] == 32: |
|
366 | if evt['event'] == 32: | |
367 | self.connections += 1 |
|
367 | self.connections += 1 | |
368 | if evt['event'] == 512: |
|
368 | if evt['event'] == 512: | |
369 | pass |
|
369 | pass | |
370 |
|
370 | |||
371 | evt.update({'description': events[evt['event']]}) |
|
371 | evt.update({'description': events[evt['event']]}) | |
372 |
|
372 | |||
373 | if evt['event'] == zmq.EVENT_MONITOR_STOPPED: |
|
373 | if evt['event'] == zmq.EVENT_MONITOR_STOPPED: | |
374 | break |
|
374 | break | |
375 | monitor.close() |
|
375 | monitor.close() | |
376 | print('event monitor thread done!') |
|
376 | print('event monitor thread done!') | |
377 |
|
377 | |||
378 | def close(self): |
|
378 | def close(self): | |
379 |
|
379 | |||
380 | BaseClass.close(self) |
|
380 | BaseClass.close(self) | |
381 |
|
381 | |||
382 | if self.sender: |
|
382 | if self.sender: | |
383 | self.sender.close() |
|
383 | self.sender.close() | |
384 |
|
384 | |||
385 | if self.receiver: |
|
385 | if self.receiver: | |
386 | self.receiver.close() |
|
386 | self.receiver.close() | |
387 |
|
387 | |||
388 | log.success('Done...(Time:{:4.2f} secs)'.format(time.time()-self.start_time), self.name) |
|
388 | log.success('Done...(Time:{:4.2f} secs)'.format(time.time()-self.start_time), self.name) | |
389 |
|
389 | |||
390 | return MPClass |
|
390 | return MPClass |
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