##// END OF EJS Templates
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1 '''
1 '''
2 Created on September , 2012
2 Created on September , 2012
3 @author:
3 @author:
4 '''
4 '''
5
5
6 import sys
6 import sys
7 import ast
7 import ast
8 import datetime
8 import datetime
9 import traceback
9 import traceback
10 import math
10 import math
11 import time
11 import time
12 from multiprocessing import Process, Queue, cpu_count
12 from multiprocessing import Process, cpu_count
13
14 import schainpy
15 import schainpy.admin
16 from schainpy.utils.log import logToFile
17
13
18 from xml.etree.ElementTree import ElementTree, Element, SubElement, tostring
14 from xml.etree.ElementTree import ElementTree, Element, SubElement, tostring
19 from xml.dom import minidom
15 from xml.dom import minidom
20
16
17 import schainpy
18 import schainpy.admin
21 from schainpy.model import *
19 from schainpy.model import *
22 from time import sleep
20 from schainpy.utils import log
23
21
24
22 DTYPES = {
25
23 'Voltage': '.r',
26 def prettify(elem):
24 'Spectra': '.pdata'
27 """Return a pretty-printed XML string for the Element.
25 }
28 """
26
29 rough_string = tostring(elem, 'utf-8')
27 def MPProject(project, n=cpu_count()):
30 reparsed = minidom.parseString(rough_string)
28 '''
31 return reparsed.toprettyxml(indent=" ")
29 Project wrapper to run schain in n processes
32
30 '''
33 def multiSchain(child, nProcess=cpu_count(), startDate=None, endDate=None, by_day=False):
31
34 skip = 0
32 rconf = project.getReadUnitObj()
35 cursor = 0
33 op = rconf.getOperationObj('run')
36 nFiles = None
34 dt1 = op.getParameterValue('startDate')
37 processes = []
35 dt2 = op.getParameterValue('endDate')
38 dt1 = datetime.datetime.strptime(startDate, '%Y/%m/%d')
39 dt2 = datetime.datetime.strptime(endDate, '%Y/%m/%d')
40 days = (dt2 - dt1).days
36 days = (dt2 - dt1).days
41
37
42 for day in range(days+1):
38 for day in range(days+1):
43 skip = 0
39 skip = 0
44 cursor = 0
40 cursor = 0
45 q = Queue()
46 processes = []
41 processes = []
47 dt = (dt1 + datetime.timedelta(day)).strftime('%Y/%m/%d')
42 dt = dt1 + datetime.timedelta(day)
48 firstProcess = Process(target=child, args=(cursor, skip, q, dt))
43 dt_str = dt.strftime('%Y/%m/%d')
49 firstProcess.start()
44 reader = JRODataReader()
50 if by_day:
45 paths, files = reader.searchFilesOffLine(path=rconf.path,
51 continue
46 startDate=dt,
52 nFiles = q.get()
47 endDate=dt,
53 if nFiles==0:
48 ext=DTYPES[rconf.datatype])
49 nFiles = len(files)
50 if nFiles == 0:
54 continue
51 continue
55 firstProcess.terminate()
52 skip = int(math.ceil(nFiles/n))
56 skip = int(math.ceil(nFiles/nProcess))
53 while nFiles > cursor*skip:
57 while True:
54 rconf.update(startDate=dt_str, endDate=dt_str, cursor=cursor,
58 processes.append(Process(target=child, args=(cursor, skip, q, dt)))
55 skip=skip)
59 processes[cursor].start()
56 p = project.clone()
60 if nFiles < cursor*skip:
57 p.start()
61 break
58 processes.append(p)
62 cursor += 1
59 cursor += 1
63
60
64 def beforeExit(exctype, value, trace):
61 def beforeExit(exctype, value, trace):
65 for process in processes:
62 for process in processes:
66 process.terminate()
63 process.terminate()
67 process.join()
64 process.join()
68 print traceback.print_tb(trace)
65 print traceback.print_tb(trace)
69
66
70 sys.excepthook = beforeExit
67 sys.excepthook = beforeExit
71
68
72 for process in processes:
69 for process in processes:
73 process.join()
70 process.join()
74 process.terminate()
71 process.terminate()
75
72
76 time.sleep(3)
73 time.sleep(3)
77
74
78
79 class ParameterConf():
75 class ParameterConf():
80
76
81 id = None
77 id = None
82 name = None
78 name = None
83 value = None
79 value = None
84 format = None
80 format = None
85
81
86 __formated_value = None
82 __formated_value = None
87
83
88 ELEMENTNAME = 'Parameter'
84 ELEMENTNAME = 'Parameter'
89
85
90 def __init__(self):
86 def __init__(self):
91
87
92 self.format = 'str'
88 self.format = 'str'
93
89
94 def getElementName(self):
90 def getElementName(self):
95
91
96 return self.ELEMENTNAME
92 return self.ELEMENTNAME
97
93
98 def getValue(self):
94 def getValue(self):
99
95
100 value = self.value
96 value = self.value
101 format = self.format
97 format = self.format
102
98
103 if self.__formated_value != None:
99 if self.__formated_value != None:
104
100
105 return self.__formated_value
101 return self.__formated_value
106
102
107 if format == 'obj':
103 if format == 'obj':
108 return value
104 return value
109
105
110 if format == 'str':
106 if format == 'str':
111 self.__formated_value = str(value)
107 self.__formated_value = str(value)
112 return self.__formated_value
108 return self.__formated_value
113
109
114 if value == '':
110 if value == '':
115 raise ValueError, "%s: This parameter value is empty" %self.name
111 raise ValueError, '%s: This parameter value is empty' %self.name
116
112
117 if format == 'list':
113 if format == 'list':
118 strList = value.split(',')
114 strList = value.split(',')
119
115
120 self.__formated_value = strList
116 self.__formated_value = strList
121
117
122 return self.__formated_value
118 return self.__formated_value
123
119
124 if format == 'intlist':
120 if format == 'intlist':
125 """
121 '''
126 Example:
122 Example:
127 value = (0,1,2)
123 value = (0,1,2)
128 """
124 '''
129
125
130 new_value = ast.literal_eval(value)
126 new_value = ast.literal_eval(value)
131
127
132 if type(new_value) not in (tuple, list):
128 if type(new_value) not in (tuple, list):
133 new_value = [int(new_value)]
129 new_value = [int(new_value)]
134
130
135 self.__formated_value = new_value
131 self.__formated_value = new_value
136
132
137 return self.__formated_value
133 return self.__formated_value
138
134
139 if format == 'floatlist':
135 if format == 'floatlist':
140 """
136 '''
141 Example:
137 Example:
142 value = (0.5, 1.4, 2.7)
138 value = (0.5, 1.4, 2.7)
143 """
139 '''
144
140
145 new_value = ast.literal_eval(value)
141 new_value = ast.literal_eval(value)
146
142
147 if type(new_value) not in (tuple, list):
143 if type(new_value) not in (tuple, list):
148 new_value = [float(new_value)]
144 new_value = [float(new_value)]
149
145
150 self.__formated_value = new_value
146 self.__formated_value = new_value
151
147
152 return self.__formated_value
148 return self.__formated_value
153
149
154 if format == 'date':
150 if format == 'date':
155 strList = value.split('/')
151 strList = value.split('/')
156 intList = [int(x) for x in strList]
152 intList = [int(x) for x in strList]
157 date = datetime.date(intList[0], intList[1], intList[2])
153 date = datetime.date(intList[0], intList[1], intList[2])
158
154
159 self.__formated_value = date
155 self.__formated_value = date
160
156
161 return self.__formated_value
157 return self.__formated_value
162
158
163 if format == 'time':
159 if format == 'time':
164 strList = value.split(':')
160 strList = value.split(':')
165 intList = [int(x) for x in strList]
161 intList = [int(x) for x in strList]
166 time = datetime.time(intList[0], intList[1], intList[2])
162 time = datetime.time(intList[0], intList[1], intList[2])
167
163
168 self.__formated_value = time
164 self.__formated_value = time
169
165
170 return self.__formated_value
166 return self.__formated_value
171
167
172 if format == 'pairslist':
168 if format == 'pairslist':
173 """
169 '''
174 Example:
170 Example:
175 value = (0,1),(1,2)
171 value = (0,1),(1,2)
176 """
172 '''
177
173
178 new_value = ast.literal_eval(value)
174 new_value = ast.literal_eval(value)
179
175
180 if type(new_value) not in (tuple, list):
176 if type(new_value) not in (tuple, list):
181 raise ValueError, "%s has to be a tuple or list of pairs" %value
177 raise ValueError, '%s has to be a tuple or list of pairs' %value
182
178
183 if type(new_value[0]) not in (tuple, list):
179 if type(new_value[0]) not in (tuple, list):
184 if len(new_value) != 2:
180 if len(new_value) != 2:
185 raise ValueError, "%s has to be a tuple or list of pairs" %value
181 raise ValueError, '%s has to be a tuple or list of pairs' %value
186 new_value = [new_value]
182 new_value = [new_value]
187
183
188 for thisPair in new_value:
184 for thisPair in new_value:
189 if len(thisPair) != 2:
185 if len(thisPair) != 2:
190 raise ValueError, "%s has to be a tuple or list of pairs" %value
186 raise ValueError, '%s has to be a tuple or list of pairs' %value
191
187
192 self.__formated_value = new_value
188 self.__formated_value = new_value
193
189
194 return self.__formated_value
190 return self.__formated_value
195
191
196 if format == 'multilist':
192 if format == 'multilist':
197 """
193 '''
198 Example:
194 Example:
199 value = (0,1,2),(3,4,5)
195 value = (0,1,2),(3,4,5)
200 """
196 '''
201 multiList = ast.literal_eval(value)
197 multiList = ast.literal_eval(value)
202
198
203 if type(multiList[0]) == int:
199 if type(multiList[0]) == int:
204 multiList = ast.literal_eval("(" + value + ")")
200 multiList = ast.literal_eval('(' + value + ')')
205
201
206 self.__formated_value = multiList
202 self.__formated_value = multiList
207
203
208 return self.__formated_value
204 return self.__formated_value
209
205
210 if format == 'bool':
206 if format == 'bool':
211 value = int(value)
207 value = int(value)
212
208
213 if format == 'int':
209 if format == 'int':
214 value = float(value)
210 value = float(value)
215
211
216 format_func = eval(format)
212 format_func = eval(format)
217
213
218 self.__formated_value = format_func(value)
214 self.__formated_value = format_func(value)
219
215
220 return self.__formated_value
216 return self.__formated_value
221
217
222 def updateId(self, new_id):
218 def updateId(self, new_id):
223
219
224 self.id = str(new_id)
220 self.id = str(new_id)
225
221
226 def setup(self, id, name, value, format='str'):
222 def setup(self, id, name, value, format='str'):
227 self.id = str(id)
223 self.id = str(id)
228 self.name = name
224 self.name = name
229 if format == 'obj':
225 if format == 'obj':
230 self.value = value
226 self.value = value
231 else:
227 else:
232 self.value = str(value)
228 self.value = str(value)
233 self.format = str.lower(format)
229 self.format = str.lower(format)
234
230
235 self.getValue()
231 self.getValue()
236
232
237 return 1
233 return 1
238
234
239 def update(self, name, value, format='str'):
235 def update(self, name, value, format='str'):
240
236
241 self.name = name
237 self.name = name
242 self.value = str(value)
238 self.value = str(value)
243 self.format = format
239 self.format = format
244
240
245 def makeXml(self, opElement):
241 def makeXml(self, opElement):
246 if self.name not in ('queue',):
242 if self.name not in ('queue',):
247 parmElement = SubElement(opElement, self.ELEMENTNAME)
243 parmElement = SubElement(opElement, self.ELEMENTNAME)
248 parmElement.set('id', str(self.id))
244 parmElement.set('id', str(self.id))
249 parmElement.set('name', self.name)
245 parmElement.set('name', self.name)
250 parmElement.set('value', self.value)
246 parmElement.set('value', self.value)
251 parmElement.set('format', self.format)
247 parmElement.set('format', self.format)
252
248
253 def readXml(self, parmElement):
249 def readXml(self, parmElement):
254
250
255 self.id = parmElement.get('id')
251 self.id = parmElement.get('id')
256 self.name = parmElement.get('name')
252 self.name = parmElement.get('name')
257 self.value = parmElement.get('value')
253 self.value = parmElement.get('value')
258 self.format = str.lower(parmElement.get('format'))
254 self.format = str.lower(parmElement.get('format'))
259
255
260 #Compatible with old signal chain version
256 #Compatible with old signal chain version
261 if self.format == 'int' and self.name == 'idfigure':
257 if self.format == 'int' and self.name == 'idfigure':
262 self.name = 'id'
258 self.name = 'id'
263
259
264 def printattr(self):
260 def printattr(self):
265
261
266 print "Parameter[%s]: name = %s, value = %s, format = %s" %(self.id, self.name, self.value, self.format)
262 print 'Parameter[%s]: name = %s, value = %s, format = %s' %(self.id, self.name, self.value, self.format)
267
263
268 class OperationConf():
264 class OperationConf():
269
265
270 id = None
266 id = None
271 name = None
267 name = None
272 priority = None
268 priority = None
273 type = None
269 type = None
274
270
275 parmConfObjList = []
271 parmConfObjList = []
276
272
277 ELEMENTNAME = 'Operation'
273 ELEMENTNAME = 'Operation'
278
274
279 def __init__(self):
275 def __init__(self):
280
276
281 self.id = '0'
277 self.id = '0'
282 self.name = None
278 self.name = None
283 self.priority = None
279 self.priority = None
284 self.type = 'self'
280 self.type = 'self'
285
281
286
282
287 def __getNewId(self):
283 def __getNewId(self):
288
284
289 return int(self.id)*10 + len(self.parmConfObjList) + 1
285 return int(self.id)*10 + len(self.parmConfObjList) + 1
290
286
291 def updateId(self, new_id):
287 def updateId(self, new_id):
292
288
293 self.id = str(new_id)
289 self.id = str(new_id)
294
290
295 n = 1
291 n = 1
296 for parmObj in self.parmConfObjList:
292 for parmObj in self.parmConfObjList:
297
293
298 idParm = str(int(new_id)*10 + n)
294 idParm = str(int(new_id)*10 + n)
299 parmObj.updateId(idParm)
295 parmObj.updateId(idParm)
300
296
301 n += 1
297 n += 1
302
298
303 def getElementName(self):
299 def getElementName(self):
304
300
305 return self.ELEMENTNAME
301 return self.ELEMENTNAME
306
302
307 def getParameterObjList(self):
303 def getParameterObjList(self):
308
304
309 return self.parmConfObjList
305 return self.parmConfObjList
310
306
311 def getParameterObj(self, parameterName):
307 def getParameterObj(self, parameterName):
312
308
313 for parmConfObj in self.parmConfObjList:
309 for parmConfObj in self.parmConfObjList:
314
310
315 if parmConfObj.name != parameterName:
311 if parmConfObj.name != parameterName:
316 continue
312 continue
317
313
318 return parmConfObj
314 return parmConfObj
319
315
320 return None
316 return None
321
317
322 def getParameterObjfromValue(self, parameterValue):
318 def getParameterObjfromValue(self, parameterValue):
323
319
324 for parmConfObj in self.parmConfObjList:
320 for parmConfObj in self.parmConfObjList:
325
321
326 if parmConfObj.getValue() != parameterValue:
322 if parmConfObj.getValue() != parameterValue:
327 continue
323 continue
328
324
329 return parmConfObj.getValue()
325 return parmConfObj.getValue()
330
326
331 return None
327 return None
332
328
333 def getParameterValue(self, parameterName):
329 def getParameterValue(self, parameterName):
334
330
335 parameterObj = self.getParameterObj(parameterName)
331 parameterObj = self.getParameterObj(parameterName)
336
332
337 # if not parameterObj:
333 # if not parameterObj:
338 # return None
334 # return None
339
335
340 value = parameterObj.getValue()
336 value = parameterObj.getValue()
341
337
342 return value
338 return value
343
339
344
340
345 def getKwargs(self):
341 def getKwargs(self):
346
342
347 kwargs = {}
343 kwargs = {}
348
344
349 for parmConfObj in self.parmConfObjList:
345 for parmConfObj in self.parmConfObjList:
350 if self.name == 'run' and parmConfObj.name == 'datatype':
346 if self.name == 'run' and parmConfObj.name == 'datatype':
351 continue
347 continue
352
348
353 kwargs[parmConfObj.name] = parmConfObj.getValue()
349 kwargs[parmConfObj.name] = parmConfObj.getValue()
354
350
355 return kwargs
351 return kwargs
356
352
357 def setup(self, id, name, priority, type):
353 def setup(self, id, name, priority, type):
358
354
359 self.id = str(id)
355 self.id = str(id)
360 self.name = name
356 self.name = name
361 self.type = type
357 self.type = type
362 self.priority = priority
358 self.priority = priority
363
359
364 self.parmConfObjList = []
360 self.parmConfObjList = []
365
361
366 def removeParameters(self):
362 def removeParameters(self):
367
363
368 for obj in self.parmConfObjList:
364 for obj in self.parmConfObjList:
369 del obj
365 del obj
370
366
371 self.parmConfObjList = []
367 self.parmConfObjList = []
372
368
373 def addParameter(self, name, value, format='str'):
369 def addParameter(self, name, value, format='str'):
374
370
371 if value is None:
372 return None
375 id = self.__getNewId()
373 id = self.__getNewId()
376
374
377 parmConfObj = ParameterConf()
375 parmConfObj = ParameterConf()
378 if not parmConfObj.setup(id, name, value, format):
376 if not parmConfObj.setup(id, name, value, format):
379 return None
377 return None
380
378
381 self.parmConfObjList.append(parmConfObj)
379 self.parmConfObjList.append(parmConfObj)
382
380
383 return parmConfObj
381 return parmConfObj
384
382
385 def changeParameter(self, name, value, format='str'):
383 def changeParameter(self, name, value, format='str'):
386
384
387 parmConfObj = self.getParameterObj(name)
385 parmConfObj = self.getParameterObj(name)
388 parmConfObj.update(name, value, format)
386 parmConfObj.update(name, value, format)
389
387
390 return parmConfObj
388 return parmConfObj
391
389
392 def makeXml(self, procUnitElement):
390 def makeXml(self, procUnitElement):
393
391
394 opElement = SubElement(procUnitElement, self.ELEMENTNAME)
392 opElement = SubElement(procUnitElement, self.ELEMENTNAME)
395 opElement.set('id', str(self.id))
393 opElement.set('id', str(self.id))
396 opElement.set('name', self.name)
394 opElement.set('name', self.name)
397 opElement.set('type', self.type)
395 opElement.set('type', self.type)
398 opElement.set('priority', str(self.priority))
396 opElement.set('priority', str(self.priority))
399
397
400 for parmConfObj in self.parmConfObjList:
398 for parmConfObj in self.parmConfObjList:
401 parmConfObj.makeXml(opElement)
399 parmConfObj.makeXml(opElement)
402
400
403 def readXml(self, opElement):
401 def readXml(self, opElement):
404
402
405 self.id = opElement.get('id')
403 self.id = opElement.get('id')
406 self.name = opElement.get('name')
404 self.name = opElement.get('name')
407 self.type = opElement.get('type')
405 self.type = opElement.get('type')
408 self.priority = opElement.get('priority')
406 self.priority = opElement.get('priority')
409
407
410 #Compatible with old signal chain version
408 #Compatible with old signal chain version
411 #Use of 'run' method instead 'init'
409 #Use of 'run' method instead 'init'
412 if self.type == 'self' and self.name == 'init':
410 if self.type == 'self' and self.name == 'init':
413 self.name = 'run'
411 self.name = 'run'
414
412
415 self.parmConfObjList = []
413 self.parmConfObjList = []
416
414
417 parmElementList = opElement.iter(ParameterConf().getElementName())
415 parmElementList = opElement.iter(ParameterConf().getElementName())
418
416
419 for parmElement in parmElementList:
417 for parmElement in parmElementList:
420 parmConfObj = ParameterConf()
418 parmConfObj = ParameterConf()
421 parmConfObj.readXml(parmElement)
419 parmConfObj.readXml(parmElement)
422
420
423 #Compatible with old signal chain version
421 #Compatible with old signal chain version
424 #If an 'plot' OPERATION is found, changes name operation by the value of its type PARAMETER
422 #If an 'plot' OPERATION is found, changes name operation by the value of its type PARAMETER
425 if self.type != 'self' and self.name == 'Plot':
423 if self.type != 'self' and self.name == 'Plot':
426 if parmConfObj.format == 'str' and parmConfObj.name == 'type':
424 if parmConfObj.format == 'str' and parmConfObj.name == 'type':
427 self.name = parmConfObj.value
425 self.name = parmConfObj.value
428 continue
426 continue
429
427
430 self.parmConfObjList.append(parmConfObj)
428 self.parmConfObjList.append(parmConfObj)
431
429
432 def printattr(self):
430 def printattr(self):
433
431
434 print "%s[%s]: name = %s, type = %s, priority = %s" %(self.ELEMENTNAME,
432 print '%s[%s]: name = %s, type = %s, priority = %s' %(self.ELEMENTNAME,
435 self.id,
433 self.id,
436 self.name,
434 self.name,
437 self.type,
435 self.type,
438 self.priority)
436 self.priority)
439
437
440 for parmConfObj in self.parmConfObjList:
438 for parmConfObj in self.parmConfObjList:
441 parmConfObj.printattr()
439 parmConfObj.printattr()
442
440
443 def createObject(self, plotter_queue=None):
441 def createObject(self, plotter_queue=None):
444
442
445
443
446 if self.type == 'self':
444 if self.type == 'self':
447 raise ValueError, "This operation type cannot be created"
445 raise ValueError, 'This operation type cannot be created'
448
446
449 if self.type == 'plotter':
447 if self.type == 'plotter':
450 #Plotter(plotter_name)
451 if not plotter_queue:
448 if not plotter_queue:
452 raise ValueError, "plotter_queue is not defined. Use:\nmyProject = Project()\nmyProject.setPlotterQueue(plotter_queue)"
449 raise ValueError, 'plotter_queue is not defined. Use:\nmyProject = Project()\nmyProject.setPlotterQueue(plotter_queue)'
453
450
454 opObj = Plotter(self.name, plotter_queue)
451 opObj = Plotter(self.name, plotter_queue)
455
452
456 if self.type == 'external' or self.type == 'other':
453 if self.type == 'external' or self.type == 'other':
457
454
458 className = eval(self.name)
455 className = eval(self.name)
459 kwargs = self.getKwargs()
456 kwargs = self.getKwargs()
460
457
461 opObj = className(**kwargs)
458 opObj = className(**kwargs)
462
459
463 return opObj
460 return opObj
464
461
465
462
466 class ProcUnitConf():
463 class ProcUnitConf():
467
464
468 id = None
465 id = None
469 name = None
466 name = None
470 datatype = None
467 datatype = None
471 inputId = None
468 inputId = None
472 parentId = None
469 parentId = None
473
470
474 opConfObjList = []
471 opConfObjList = []
475
472
476 procUnitObj = None
473 procUnitObj = None
477 opObjList = []
474 opObjList = []
478
475
479 ELEMENTNAME = 'ProcUnit'
476 ELEMENTNAME = 'ProcUnit'
480
477
481 def __init__(self):
478 def __init__(self):
482
479
483 self.id = None
480 self.id = None
484 self.datatype = None
481 self.datatype = None
485 self.name = None
482 self.name = None
486 self.inputId = None
483 self.inputId = None
487
484
488 self.opConfObjList = []
485 self.opConfObjList = []
489
486
490 self.procUnitObj = None
487 self.procUnitObj = None
491 self.opObjDict = {}
488 self.opObjDict = {}
492
489
493 def __getPriority(self):
490 def __getPriority(self):
494
491
495 return len(self.opConfObjList)+1
492 return len(self.opConfObjList)+1
496
493
497 def __getNewId(self):
494 def __getNewId(self):
498
495
499 return int(self.id)*10 + len(self.opConfObjList) + 1
496 return int(self.id)*10 + len(self.opConfObjList) + 1
500
497
501 def getElementName(self):
498 def getElementName(self):
502
499
503 return self.ELEMENTNAME
500 return self.ELEMENTNAME
504
501
505 def getId(self):
502 def getId(self):
506
503
507 return self.id
504 return self.id
508
505
509 def updateId(self, new_id, parentId=parentId):
506 def updateId(self, new_id, parentId=parentId):
510
507
511
508
512 new_id = int(parentId)*10 + (int(self.id) % 10)
509 new_id = int(parentId)*10 + (int(self.id) % 10)
513 new_inputId = int(parentId)*10 + (int(self.inputId) % 10)
510 new_inputId = int(parentId)*10 + (int(self.inputId) % 10)
514
511
515 #If this proc unit has not inputs
512 #If this proc unit has not inputs
516 if self.inputId == '0':
513 if self.inputId == '0':
517 new_inputId = 0
514 new_inputId = 0
518
515
519 n = 1
516 n = 1
520 for opConfObj in self.opConfObjList:
517 for opConfObj in self.opConfObjList:
521
518
522 idOp = str(int(new_id)*10 + n)
519 idOp = str(int(new_id)*10 + n)
523 opConfObj.updateId(idOp)
520 opConfObj.updateId(idOp)
524
521
525 n += 1
522 n += 1
526
523
527 self.parentId = str(parentId)
524 self.parentId = str(parentId)
528 self.id = str(new_id)
525 self.id = str(new_id)
529 self.inputId = str(new_inputId)
526 self.inputId = str(new_inputId)
530
527
531
528
532 def getInputId(self):
529 def getInputId(self):
533
530
534 return self.inputId
531 return self.inputId
535
532
536 def getOperationObjList(self):
533 def getOperationObjList(self):
537
534
538 return self.opConfObjList
535 return self.opConfObjList
539
536
540 def getOperationObj(self, name=None):
537 def getOperationObj(self, name=None):
541
538
542 for opConfObj in self.opConfObjList:
539 for opConfObj in self.opConfObjList:
543
540
544 if opConfObj.name != name:
541 if opConfObj.name != name:
545 continue
542 continue
546
543
547 return opConfObj
544 return opConfObj
548
545
549 return None
546 return None
550
547
551 def getOpObjfromParamValue(self, value=None):
548 def getOpObjfromParamValue(self, value=None):
552
549
553 for opConfObj in self.opConfObjList:
550 for opConfObj in self.opConfObjList:
554 if opConfObj.getParameterObjfromValue(parameterValue=value) != value:
551 if opConfObj.getParameterObjfromValue(parameterValue=value) != value:
555 continue
552 continue
556 return opConfObj
553 return opConfObj
557 return None
554 return None
558
555
559 def getProcUnitObj(self):
556 def getProcUnitObj(self):
560
557
561 return self.procUnitObj
558 return self.procUnitObj
562
559
563 def setup(self, id, name, datatype, inputId, parentId=None):
560 def setup(self, id, name, datatype, inputId, parentId=None):
564
561
565 #Compatible with old signal chain version
562 #Compatible with old signal chain version
566 if datatype==None and name==None:
563 if datatype==None and name==None:
567 raise ValueError, "datatype or name should be defined"
564 raise ValueError, 'datatype or name should be defined'
568
565
569 if name==None:
566 if name==None:
570 if 'Proc' in datatype:
567 if 'Proc' in datatype:
571 name = datatype
568 name = datatype
572 else:
569 else:
573 name = '%sProc' %(datatype)
570 name = '%sProc' %(datatype)
574
571
575 if datatype==None:
572 if datatype==None:
576 datatype = name.replace('Proc','')
573 datatype = name.replace('Proc','')
577
574
578 self.id = str(id)
575 self.id = str(id)
579 self.name = name
576 self.name = name
580 self.datatype = datatype
577 self.datatype = datatype
581 self.inputId = inputId
578 self.inputId = inputId
582 self.parentId = parentId
579 self.parentId = parentId
583
580
584 self.opConfObjList = []
581 self.opConfObjList = []
585
582
586 self.addOperation(name='run', optype='self')
583 self.addOperation(name='run', optype='self')
587
584
588 def removeOperations(self):
585 def removeOperations(self):
589
586
590 for obj in self.opConfObjList:
587 for obj in self.opConfObjList:
591 del obj
588 del obj
592
589
593 self.opConfObjList = []
590 self.opConfObjList = []
594 self.addOperation(name='run')
591 self.addOperation(name='run')
595
592
596 def addParameter(self, **kwargs):
593 def addParameter(self, **kwargs):
597 '''
594 '''
598 Add parameters to "run" operation
595 Add parameters to 'run' operation
599 '''
596 '''
600 opObj = self.opConfObjList[0]
597 opObj = self.opConfObjList[0]
601
598
602 opObj.addParameter(**kwargs)
599 opObj.addParameter(**kwargs)
603
600
604 return opObj
601 return opObj
605
602
606 def addOperation(self, name, optype='self'):
603 def addOperation(self, name, optype='self'):
607
604
608 id = self.__getNewId()
605 id = self.__getNewId()
609 priority = self.__getPriority()
606 priority = self.__getPriority()
610
607
611 opConfObj = OperationConf()
608 opConfObj = OperationConf()
612 opConfObj.setup(id, name=name, priority=priority, type=optype)
609 opConfObj.setup(id, name=name, priority=priority, type=optype)
613
610
614 self.opConfObjList.append(opConfObj)
611 self.opConfObjList.append(opConfObj)
615
612
616 return opConfObj
613 return opConfObj
617
614
618 def makeXml(self, projectElement):
615 def makeXml(self, projectElement):
619
616
620 procUnitElement = SubElement(projectElement, self.ELEMENTNAME)
617 procUnitElement = SubElement(projectElement, self.ELEMENTNAME)
621 procUnitElement.set('id', str(self.id))
618 procUnitElement.set('id', str(self.id))
622 procUnitElement.set('name', self.name)
619 procUnitElement.set('name', self.name)
623 procUnitElement.set('datatype', self.datatype)
620 procUnitElement.set('datatype', self.datatype)
624 procUnitElement.set('inputId', str(self.inputId))
621 procUnitElement.set('inputId', str(self.inputId))
625
622
626 for opConfObj in self.opConfObjList:
623 for opConfObj in self.opConfObjList:
627 opConfObj.makeXml(procUnitElement)
624 opConfObj.makeXml(procUnitElement)
628
625
629 def readXml(self, upElement):
626 def readXml(self, upElement):
630
627
631 self.id = upElement.get('id')
628 self.id = upElement.get('id')
632 self.name = upElement.get('name')
629 self.name = upElement.get('name')
633 self.datatype = upElement.get('datatype')
630 self.datatype = upElement.get('datatype')
634 self.inputId = upElement.get('inputId')
631 self.inputId = upElement.get('inputId')
635
632
636 if self.ELEMENTNAME == "ReadUnit":
633 if self.ELEMENTNAME == 'ReadUnit':
637 self.datatype = self.datatype.replace("Reader", "")
634 self.datatype = self.datatype.replace('Reader', '')
638
635
639 if self.ELEMENTNAME == "ProcUnit":
636 if self.ELEMENTNAME == 'ProcUnit':
640 self.datatype = self.datatype.replace("Proc", "")
637 self.datatype = self.datatype.replace('Proc', '')
641
638
642 if self.inputId == 'None':
639 if self.inputId == 'None':
643 self.inputId = '0'
640 self.inputId = '0'
644
641
645 self.opConfObjList = []
642 self.opConfObjList = []
646
643
647 opElementList = upElement.iter(OperationConf().getElementName())
644 opElementList = upElement.iter(OperationConf().getElementName())
648
645
649 for opElement in opElementList:
646 for opElement in opElementList:
650 opConfObj = OperationConf()
647 opConfObj = OperationConf()
651 opConfObj.readXml(opElement)
648 opConfObj.readXml(opElement)
652 self.opConfObjList.append(opConfObj)
649 self.opConfObjList.append(opConfObj)
653
650
654 def printattr(self):
651 def printattr(self):
655
652
656 print "%s[%s]: name = %s, datatype = %s, inputId = %s" %(self.ELEMENTNAME,
653 print '%s[%s]: name = %s, datatype = %s, inputId = %s' %(self.ELEMENTNAME,
657 self.id,
654 self.id,
658 self.name,
655 self.name,
659 self.datatype,
656 self.datatype,
660 self.inputId)
657 self.inputId)
661
658
662 for opConfObj in self.opConfObjList:
659 for opConfObj in self.opConfObjList:
663 opConfObj.printattr()
660 opConfObj.printattr()
664
661
665
662
666 def getKwargs(self):
663 def getKwargs(self):
667
664
668 opObj = self.opConfObjList[0]
665 opObj = self.opConfObjList[0]
669 kwargs = opObj.getKwargs()
666 kwargs = opObj.getKwargs()
670
667
671 return kwargs
668 return kwargs
672
669
673 def createObjects(self, plotter_queue=None):
670 def createObjects(self, plotter_queue=None):
674
671
675 className = eval(self.name)
672 className = eval(self.name)
676 kwargs = self.getKwargs()
673 kwargs = self.getKwargs()
677 procUnitObj = className(**kwargs)
674 procUnitObj = className(**kwargs)
678
675
679 for opConfObj in self.opConfObjList:
676 for opConfObj in self.opConfObjList:
680
677
681 if opConfObj.type=='self' and self.name=='run':
678 if opConfObj.type=='self' and self.name=='run':
682 continue
679 continue
683 elif opConfObj.type=='self':
680 elif opConfObj.type=='self':
684 procUnitObj.addOperationKwargs(opConfObj.id, **opConfObj.getKwargs())
681 procUnitObj.addOperationKwargs(opConfObj.id, **opConfObj.getKwargs())
685 continue
682 continue
686
683
687 opObj = opConfObj.createObject(plotter_queue)
684 opObj = opConfObj.createObject(plotter_queue)
688
685
689 self.opObjDict[opConfObj.id] = opObj
686 self.opObjDict[opConfObj.id] = opObj
690
687
691 procUnitObj.addOperation(opObj, opConfObj.id)
688 procUnitObj.addOperation(opObj, opConfObj.id)
692
689
693 self.procUnitObj = procUnitObj
690 self.procUnitObj = procUnitObj
694
691
695 return procUnitObj
692 return procUnitObj
696
693
697 def run(self):
694 def run(self):
698
695
699 is_ok = False
696 is_ok = False
700
697
701 for opConfObj in self.opConfObjList:
698 for opConfObj in self.opConfObjList:
702
699
703 kwargs = {}
700 kwargs = {}
704 for parmConfObj in opConfObj.getParameterObjList():
701 for parmConfObj in opConfObj.getParameterObjList():
705 if opConfObj.name == 'run' and parmConfObj.name == 'datatype':
702 if opConfObj.name == 'run' and parmConfObj.name == 'datatype':
706 continue
703 continue
707
704
708 kwargs[parmConfObj.name] = parmConfObj.getValue()
705 kwargs[parmConfObj.name] = parmConfObj.getValue()
709
706
710 #ini = time.time()
711
712 #print "\tRunning the '%s' operation with %s" %(opConfObj.name, opConfObj.id)
713 sts = self.procUnitObj.call(opType = opConfObj.type,
707 sts = self.procUnitObj.call(opType = opConfObj.type,
714 opName = opConfObj.name,
708 opName = opConfObj.name,
715 opId = opConfObj.id)
709 opId = opConfObj.id)
716
717 # total_time = time.time() - ini
718 #
719 # if total_time > 0.002:
720 # print "%s::%s took %f seconds" %(self.name, opConfObj.name, total_time)
721
710
722 is_ok = is_ok or sts
711 is_ok = is_ok or sts
723
712
724 return is_ok
713 return is_ok
725
714
726 def close(self):
715 def close(self):
727
716
728 for opConfObj in self.opConfObjList:
717 for opConfObj in self.opConfObjList:
729 if opConfObj.type == 'self':
718 if opConfObj.type == 'self':
730 continue
719 continue
731
720
732 opObj = self.procUnitObj.getOperationObj(opConfObj.id)
721 opObj = self.procUnitObj.getOperationObj(opConfObj.id)
733 opObj.close()
722 opObj.close()
734
723
735 self.procUnitObj.close()
724 self.procUnitObj.close()
736
725
737 return
726 return
738
727
739 class ReadUnitConf(ProcUnitConf):
728 class ReadUnitConf(ProcUnitConf):
740
729
741 path = None
730 path = None
742 startDate = None
731 startDate = None
743 endDate = None
732 endDate = None
744 startTime = None
733 startTime = None
745 endTime = None
734 endTime = None
746
735
747 ELEMENTNAME = 'ReadUnit'
736 ELEMENTNAME = 'ReadUnit'
748
737
749 def __init__(self):
738 def __init__(self):
750
739
751 self.id = None
740 self.id = None
752 self.datatype = None
741 self.datatype = None
753 self.name = None
742 self.name = None
754 self.inputId = None
743 self.inputId = None
755
744
756 self.parentId = None
745 self.parentId = None
757
746
758 self.opConfObjList = []
747 self.opConfObjList = []
759 self.opObjList = []
748 self.opObjList = []
760
749
761 def getElementName(self):
750 def getElementName(self):
762
751
763 return self.ELEMENTNAME
752 return self.ELEMENTNAME
764
753
765 def setup(self, id, name, datatype, path='', startDate="", endDate="", startTime="",
754 def setup(self, id, name, datatype, path='', startDate='', endDate='',
766 endTime="", parentId=None, queue=None, server=None, **kwargs):
755 startTime='', endTime='', parentId=None, server=None, **kwargs):
756
767 #Compatible with old signal chain version
757 #Compatible with old signal chain version
768 if datatype==None and name==None:
758 if datatype==None and name==None:
769 raise ValueError, "datatype or name should be defined"
759 raise ValueError, 'datatype or name should be defined'
770
760
771 if name==None:
761 if name==None:
772 if 'Reader' in datatype:
762 if 'Reader' in datatype:
773 name = datatype
763 name = datatype
774 else:
764 else:
775 name = '%sReader' %(datatype)
765 name = '%sReader' %(datatype)
776 if datatype==None:
766 if datatype==None:
777 datatype = name.replace('Reader','')
767 datatype = name.replace('Reader','')
778
768
779 self.id = id
769 self.id = id
780 self.name = name
770 self.name = name
781 self.datatype = datatype
771 self.datatype = datatype
782 if path != '':
772 if path != '':
783 self.path = os.path.abspath(path)
773 self.path = os.path.abspath(path)
784 self.startDate = startDate
774 self.startDate = startDate
785 self.endDate = endDate
775 self.endDate = endDate
786 self.startTime = startTime
776 self.startTime = startTime
787 self.endTime = endTime
777 self.endTime = endTime
788
789 self.inputId = '0'
778 self.inputId = '0'
790 self.parentId = parentId
779 self.parentId = parentId
791 self.queue = queue
792 self.server = server
780 self.server = server
793 self.addRunOperation(**kwargs)
781 self.addRunOperation(**kwargs)
794
782
795 def update(self, datatype, path, startDate, endDate, startTime, endTime, parentId=None, name=None, **kwargs):
783 def update(self, **kwargs):
796
784
797 #Compatible with old signal chain version
785 if 'datatype' in kwargs:
798 if datatype==None and name==None:
786 datatype = kwargs.pop('datatype')
799 raise ValueError, "datatype or name should be defined"
800
801 if name==None:
802 if 'Reader' in datatype:
787 if 'Reader' in datatype:
803 name = datatype
788 self.name = datatype
804 else:
789 else:
805 name = '%sReader' %(datatype)
790 self.name = '%sReader' %(datatype)
806
791 self.datatype = self.name.replace('Reader', '')
807 if datatype==None:
808 datatype = name.replace('Reader','')
809
810 self.datatype = datatype
811 self.name = name
812 self.path = path
813 self.startDate = startDate
814 self.endDate = endDate
815 self.startTime = startTime
816 self.endTime = endTime
817
792
793 attrs = ('path', 'startDate', 'endDate', 'startTime', 'endTime', 'parentId')
794
795 for attr in attrs:
796 if attr in kwargs:
797 setattr(self, attr, kwargs.pop(attr))
798
818 self.inputId = '0'
799 self.inputId = '0'
819 self.parentId = parentId
820
821 self.updateRunOperation(**kwargs)
800 self.updateRunOperation(**kwargs)
822
801
823 def removeOperations(self):
802 def removeOperations(self):
824
803
825 for obj in self.opConfObjList:
804 for obj in self.opConfObjList:
826 del obj
805 del obj
827
806
828 self.opConfObjList = []
807 self.opConfObjList = []
829
808
830 def addRunOperation(self, **kwargs):
809 def addRunOperation(self, **kwargs):
831
810
832 opObj = self.addOperation(name = 'run', optype = 'self')
811 opObj = self.addOperation(name = 'run', optype = 'self')
833
812
834 if self.server is None:
813 if self.server is None:
835 opObj.addParameter(name='datatype' , value=self.datatype, format='str')
814 opObj.addParameter(name='datatype', value=self.datatype, format='str')
836 opObj.addParameter(name='path' , value=self.path, format='str')
815 opObj.addParameter(name='path', value=self.path, format='str')
837 opObj.addParameter(name='startDate' , value=self.startDate, format='date')
816 opObj.addParameter(name='startDate', value=self.startDate, format='date')
838 opObj.addParameter(name='endDate' , value=self.endDate, format='date')
817 opObj.addParameter(name='endDate', value=self.endDate, format='date')
839 opObj.addParameter(name='startTime' , value=self.startTime, format='time')
818 opObj.addParameter(name='startTime', value=self.startTime, format='time')
840 opObj.addParameter(name='endTime' , value=self.endTime, format='time')
819 opObj.addParameter(name='endTime', value=self.endTime, format='time')
841 opObj.addParameter(name='queue' , value=self.queue, format='obj')
820
842 for key, value in kwargs.items():
821 for key, value in kwargs.items():
843 opObj.addParameter(name=key, value=value, format=type(value).__name__)
822 opObj.addParameter(name=key, value=value, format=type(value).__name__)
844 else:
823 else:
845 opObj.addParameter(name='server' , value=self.server, format='str')
824 opObj.addParameter(name='server' , value=self.server, format='str')
846
825
847
826
848 return opObj
827 return opObj
849
828
850 def updateRunOperation(self, **kwargs):
829 def updateRunOperation(self, **kwargs):
851
830
852 opObj = self.getOperationObj(name = 'run')
831 opObj = self.getOperationObj(name='run')
853 opObj.removeParameters()
832 opObj.removeParameters()
854
833
855 opObj.addParameter(name='datatype' , value=self.datatype, format='str')
834 opObj.addParameter(name='datatype', value=self.datatype, format='str')
856 opObj.addParameter(name='path' , value=self.path, format='str')
835 opObj.addParameter(name='path', value=self.path, format='str')
857 opObj.addParameter(name='startDate' , value=self.startDate, format='date')
836 opObj.addParameter(name='startDate', value=self.startDate, format='date')
858 opObj.addParameter(name='endDate' , value=self.endDate, format='date')
837 opObj.addParameter(name='endDate', value=self.endDate, format='date')
859 opObj.addParameter(name='startTime' , value=self.startTime, format='time')
838 opObj.addParameter(name='startTime', value=self.startTime, format='time')
860 opObj.addParameter(name='endTime' , value=self.endTime, format='time')
839 opObj.addParameter(name='endTime', value=self.endTime, format='time')
861
840
862 for key, value in kwargs.items():
841 for key, value in kwargs.items():
863 opObj.addParameter(name=key, value=value, format=type(value).__name__)
842 opObj.addParameter(name=key, value=value, format=type(value).__name__)
864
843
865 return opObj
844 return opObj
866
845
867 # def makeXml(self, projectElement):
868 #
869 # procUnitElement = SubElement(projectElement, self.ELEMENTNAME)
870 # procUnitElement.set('id', str(self.id))
871 # procUnitElement.set('name', self.name)
872 # procUnitElement.set('datatype', self.datatype)
873 # procUnitElement.set('inputId', str(self.inputId))
874 #
875 # for opConfObj in self.opConfObjList:
876 # opConfObj.makeXml(procUnitElement)
877
878 def readXml(self, upElement):
846 def readXml(self, upElement):
879
847
880 self.id = upElement.get('id')
848 self.id = upElement.get('id')
881 self.name = upElement.get('name')
849 self.name = upElement.get('name')
882 self.datatype = upElement.get('datatype')
850 self.datatype = upElement.get('datatype')
883 self.inputId = upElement.get('inputId')
851 self.inputId = upElement.get('inputId')
884
852
885 if self.ELEMENTNAME == "ReadUnit":
853 if self.ELEMENTNAME == 'ReadUnit':
886 self.datatype = self.datatype.replace("Reader", "")
854 self.datatype = self.datatype.replace('Reader', '')
887
855
888 if self.inputId == 'None':
856 if self.inputId == 'None':
889 self.inputId = '0'
857 self.inputId = '0'
890
858
891 self.opConfObjList = []
859 self.opConfObjList = []
892
860
893 opElementList = upElement.iter(OperationConf().getElementName())
861 opElementList = upElement.iter(OperationConf().getElementName())
894
862
895 for opElement in opElementList:
863 for opElement in opElementList:
896 opConfObj = OperationConf()
864 opConfObj = OperationConf()
897 opConfObj.readXml(opElement)
865 opConfObj.readXml(opElement)
898 self.opConfObjList.append(opConfObj)
866 self.opConfObjList.append(opConfObj)
899
867
900 if opConfObj.name == 'run':
868 if opConfObj.name == 'run':
901 self.path = opConfObj.getParameterValue('path')
869 self.path = opConfObj.getParameterValue('path')
902 self.startDate = opConfObj.getParameterValue('startDate')
870 self.startDate = opConfObj.getParameterValue('startDate')
903 self.endDate = opConfObj.getParameterValue('endDate')
871 self.endDate = opConfObj.getParameterValue('endDate')
904 self.startTime = opConfObj.getParameterValue('startTime')
872 self.startTime = opConfObj.getParameterValue('startTime')
905 self.endTime = opConfObj.getParameterValue('endTime')
873 self.endTime = opConfObj.getParameterValue('endTime')
906
874
907 class Project(Process):
875 class Project(Process):
876
908 id = None
877 id = None
909 name = None
878 # name = None
910 description = None
879 description = None
911 filename = None
880 filename = None
912
881
913 procUnitConfObjDict = None
882 procUnitConfObjDict = None
914
883
915 ELEMENTNAME = 'Project'
884 ELEMENTNAME = 'Project'
916
885
917 plotterQueue = None
886 plotterQueue = None
918
887
919 def __init__(self, plotter_queue=None, logfile=None):
888 def __init__(self, plotter_queue=None):
889
920 Process.__init__(self)
890 Process.__init__(self)
921 self.id = None
891 self.id = None
922 self.name = None
892 # self.name = None
923 self.description = None
893 self.description = None
924 if logfile is not None:
894
925 logToFile(logfile)
926 self.plotterQueue = plotter_queue
895 self.plotterQueue = plotter_queue
927
896
928 self.procUnitConfObjDict = {}
897 self.procUnitConfObjDict = {}
929
898
930 def __getNewId(self):
899 def __getNewId(self):
931
900
932 idList = self.procUnitConfObjDict.keys()
901 idList = self.procUnitConfObjDict.keys()
933
902
934 id = int(self.id)*10
903 id = int(self.id)*10
935
904
936 while True:
905 while True:
937 id += 1
906 id += 1
938
907
939 if str(id) in idList:
908 if str(id) in idList:
940 continue
909 continue
941
910
942 break
911 break
943
912
944 return str(id)
913 return str(id)
945
914
946 def getElementName(self):
915 def getElementName(self):
947
916
948 return self.ELEMENTNAME
917 return self.ELEMENTNAME
949
918
950 def getId(self):
919 def getId(self):
951
920
952 return self.id
921 return self.id
953
922
954 def updateId(self, new_id):
923 def updateId(self, new_id):
955
924
956 self.id = str(new_id)
925 self.id = str(new_id)
957
926
958 keyList = self.procUnitConfObjDict.keys()
927 keyList = self.procUnitConfObjDict.keys()
959 keyList.sort()
928 keyList.sort()
960
929
961 n = 1
930 n = 1
962 newProcUnitConfObjDict = {}
931 newProcUnitConfObjDict = {}
963
932
964 for procKey in keyList:
933 for procKey in keyList:
965
934
966 procUnitConfObj = self.procUnitConfObjDict[procKey]
935 procUnitConfObj = self.procUnitConfObjDict[procKey]
967 idProcUnit = str(int(self.id)*10 + n)
936 idProcUnit = str(int(self.id)*10 + n)
968 procUnitConfObj.updateId(idProcUnit, parentId = self.id)
937 procUnitConfObj.updateId(idProcUnit, parentId = self.id)
969
938
970 newProcUnitConfObjDict[idProcUnit] = procUnitConfObj
939 newProcUnitConfObjDict[idProcUnit] = procUnitConfObj
971 n += 1
940 n += 1
972
941
973 self.procUnitConfObjDict = newProcUnitConfObjDict
942 self.procUnitConfObjDict = newProcUnitConfObjDict
974
943
975 def setup(self, id, name, description):
944 def setup(self, id, name='', description=''):
976
945
946 print
947 print '*'*60
948 print ' Starting SIGNAL CHAIN PROCESSING v%s ' % schainpy.__version__
949 print '*'*60
950 print
977 self.id = str(id)
951 self.id = str(id)
978 self.name = name
979 self.description = description
952 self.description = description
980
953
981 def update(self, name, description):
954 def update(self, name, description):
982
955
983 self.name = name
984 self.description = description
956 self.description = description
985
957
958 def clone(self):
959
960 p = Project()
961 p.procUnitConfObjDict = self.procUnitConfObjDict
962 return p
963
986 def addReadUnit(self, id=None, datatype=None, name=None, **kwargs):
964 def addReadUnit(self, id=None, datatype=None, name=None, **kwargs):
965
987 if id is None:
966 if id is None:
988 idReadUnit = self.__getNewId()
967 idReadUnit = self.__getNewId()
989 else:
968 else:
990 idReadUnit = str(id)
969 idReadUnit = str(id)
991
970
992 readUnitConfObj = ReadUnitConf()
971 readUnitConfObj = ReadUnitConf()
993 readUnitConfObj.setup(idReadUnit, name, datatype, parentId=self.id, **kwargs)
972 readUnitConfObj.setup(idReadUnit, name, datatype, parentId=self.id, **kwargs)
994
973
995 self.procUnitConfObjDict[readUnitConfObj.getId()] = readUnitConfObj
974 self.procUnitConfObjDict[readUnitConfObj.getId()] = readUnitConfObj
996
975
997 return readUnitConfObj
976 return readUnitConfObj
998
977
999 def addProcUnit(self, inputId='0', datatype=None, name=None):
978 def addProcUnit(self, inputId='0', datatype=None, name=None):
1000
979
1001 idProcUnit = self.__getNewId()
980 idProcUnit = self.__getNewId()
1002
981
1003 procUnitConfObj = ProcUnitConf()
982 procUnitConfObj = ProcUnitConf()
1004 procUnitConfObj.setup(idProcUnit, name, datatype, inputId, parentId=self.id)
983 procUnitConfObj.setup(idProcUnit, name, datatype, inputId, parentId=self.id)
1005
984
1006 self.procUnitConfObjDict[procUnitConfObj.getId()] = procUnitConfObj
985 self.procUnitConfObjDict[procUnitConfObj.getId()] = procUnitConfObj
1007
986
1008 return procUnitConfObj
987 return procUnitConfObj
1009
988
1010 def removeProcUnit(self, id):
989 def removeProcUnit(self, id):
1011
990
1012 if id in self.procUnitConfObjDict.keys():
991 if id in self.procUnitConfObjDict.keys():
1013 self.procUnitConfObjDict.pop(id)
992 self.procUnitConfObjDict.pop(id)
1014
993
1015 def getReadUnitId(self):
994 def getReadUnitId(self):
1016
995
1017 readUnitConfObj = self.getReadUnitObj()
996 readUnitConfObj = self.getReadUnitObj()
1018
997
1019 return readUnitConfObj.id
998 return readUnitConfObj.id
1020
999
1021 def getReadUnitObj(self):
1000 def getReadUnitObj(self):
1022
1001
1023 for obj in self.procUnitConfObjDict.values():
1002 for obj in self.procUnitConfObjDict.values():
1024 if obj.getElementName() == "ReadUnit":
1003 if obj.getElementName() == 'ReadUnit':
1025 return obj
1004 return obj
1026
1005
1027 return None
1006 return None
1028
1007
1029 def getProcUnitObj(self, id=None, name=None):
1008 def getProcUnitObj(self, id=None, name=None):
1030
1009
1031 if id != None:
1010 if id != None:
1032 return self.procUnitConfObjDict[id]
1011 return self.procUnitConfObjDict[id]
1033
1012
1034 if name != None:
1013 if name != None:
1035 return self.getProcUnitObjByName(name)
1014 return self.getProcUnitObjByName(name)
1036
1015
1037 return None
1016 return None
1038
1017
1039 def getProcUnitObjByName(self, name):
1018 def getProcUnitObjByName(self, name):
1040
1019
1041 for obj in self.procUnitConfObjDict.values():
1020 for obj in self.procUnitConfObjDict.values():
1042 if obj.name == name:
1021 if obj.name == name:
1043 return obj
1022 return obj
1044
1023
1045 return None
1024 return None
1046
1025
1047 def procUnitItems(self):
1026 def procUnitItems(self):
1048
1027
1049 return self.procUnitConfObjDict.items()
1028 return self.procUnitConfObjDict.items()
1050
1029
1051 def makeXml(self):
1030 def makeXml(self):
1052
1031
1053 projectElement = Element('Project')
1032 projectElement = Element('Project')
1054 projectElement.set('id', str(self.id))
1033 projectElement.set('id', str(self.id))
1055 projectElement.set('name', self.name)
1034 projectElement.set('name', self.name)
1056 projectElement.set('description', self.description)
1035 projectElement.set('description', self.description)
1057
1036
1058 for procUnitConfObj in self.procUnitConfObjDict.values():
1037 for procUnitConfObj in self.procUnitConfObjDict.values():
1059 procUnitConfObj.makeXml(projectElement)
1038 procUnitConfObj.makeXml(projectElement)
1060
1039
1061 self.projectElement = projectElement
1040 self.projectElement = projectElement
1062
1041
1063 def writeXml(self, filename=None):
1042 def writeXml(self, filename=None):
1064
1043
1065 if filename == None:
1044 if filename == None:
1066 if self.filename:
1045 if self.filename:
1067 filename = self.filename
1046 filename = self.filename
1068 else:
1047 else:
1069 filename = "schain.xml"
1048 filename = 'schain.xml'
1070
1049
1071 if not filename:
1050 if not filename:
1072 print "filename has not been defined. Use setFilename(filename) for do it."
1051 print 'filename has not been defined. Use setFilename(filename) for do it.'
1073 return 0
1052 return 0
1074
1053
1075 abs_file = os.path.abspath(filename)
1054 abs_file = os.path.abspath(filename)
1076
1055
1077 if not os.access(os.path.dirname(abs_file), os.W_OK):
1056 if not os.access(os.path.dirname(abs_file), os.W_OK):
1078 print "No write permission on %s" %os.path.dirname(abs_file)
1057 print 'No write permission on %s' %os.path.dirname(abs_file)
1079 return 0
1058 return 0
1080
1059
1081 if os.path.isfile(abs_file) and not(os.access(abs_file, os.W_OK)):
1060 if os.path.isfile(abs_file) and not(os.access(abs_file, os.W_OK)):
1082 print "File %s already exists and it could not be overwriten" %abs_file
1061 print 'File %s already exists and it could not be overwriten' %abs_file
1083 return 0
1062 return 0
1084
1063
1085 self.makeXml()
1064 self.makeXml()
1086
1065
1087 ElementTree(self.projectElement).write(abs_file, method='xml')
1066 ElementTree(self.projectElement).write(abs_file, method='xml')
1088
1067
1089 self.filename = abs_file
1068 self.filename = abs_file
1090
1069
1091 return 1
1070 return 1
1092
1071
1093 def readXml(self, filename = None):
1072 def readXml(self, filename = None):
1094
1073
1095 if not filename:
1074 if not filename:
1096 print "filename is not defined"
1075 print 'filename is not defined'
1097 return 0
1076 return 0
1098
1077
1099 abs_file = os.path.abspath(filename)
1078 abs_file = os.path.abspath(filename)
1100
1079
1101 if not os.path.isfile(abs_file):
1080 if not os.path.isfile(abs_file):
1102 print "%s file does not exist" %abs_file
1081 print '%s file does not exist' %abs_file
1103 return 0
1082 return 0
1104
1083
1105 self.projectElement = None
1084 self.projectElement = None
1106 self.procUnitConfObjDict = {}
1085 self.procUnitConfObjDict = {}
1107
1086
1108 try:
1087 try:
1109 self.projectElement = ElementTree().parse(abs_file)
1088 self.projectElement = ElementTree().parse(abs_file)
1110 except:
1089 except:
1111 print "Error reading %s, verify file format" %filename
1090 print 'Error reading %s, verify file format' %filename
1112 return 0
1091 return 0
1113
1092
1114 self.project = self.projectElement.tag
1093 self.project = self.projectElement.tag
1115
1094
1116 self.id = self.projectElement.get('id')
1095 self.id = self.projectElement.get('id')
1117 self.name = self.projectElement.get('name')
1096 self.name = self.projectElement.get('name')
1118 self.description = self.projectElement.get('description')
1097 self.description = self.projectElement.get('description')
1119
1098
1120 readUnitElementList = self.projectElement.iter(ReadUnitConf().getElementName())
1099 readUnitElementList = self.projectElement.iter(ReadUnitConf().getElementName())
1121
1100
1122 for readUnitElement in readUnitElementList:
1101 for readUnitElement in readUnitElementList:
1123 readUnitConfObj = ReadUnitConf()
1102 readUnitConfObj = ReadUnitConf()
1124 readUnitConfObj.readXml(readUnitElement)
1103 readUnitConfObj.readXml(readUnitElement)
1125
1104
1126 if readUnitConfObj.parentId == None:
1105 if readUnitConfObj.parentId == None:
1127 readUnitConfObj.parentId = self.id
1106 readUnitConfObj.parentId = self.id
1128
1107
1129 self.procUnitConfObjDict[readUnitConfObj.getId()] = readUnitConfObj
1108 self.procUnitConfObjDict[readUnitConfObj.getId()] = readUnitConfObj
1130
1109
1131 procUnitElementList = self.projectElement.iter(ProcUnitConf().getElementName())
1110 procUnitElementList = self.projectElement.iter(ProcUnitConf().getElementName())
1132
1111
1133 for procUnitElement in procUnitElementList:
1112 for procUnitElement in procUnitElementList:
1134 procUnitConfObj = ProcUnitConf()
1113 procUnitConfObj = ProcUnitConf()
1135 procUnitConfObj.readXml(procUnitElement)
1114 procUnitConfObj.readXml(procUnitElement)
1136
1115
1137 if procUnitConfObj.parentId == None:
1116 if procUnitConfObj.parentId == None:
1138 procUnitConfObj.parentId = self.id
1117 procUnitConfObj.parentId = self.id
1139
1118
1140 self.procUnitConfObjDict[procUnitConfObj.getId()] = procUnitConfObj
1119 self.procUnitConfObjDict[procUnitConfObj.getId()] = procUnitConfObj
1141
1120
1142 self.filename = abs_file
1121 self.filename = abs_file
1143
1122
1144 return 1
1123 return 1
1145
1124
1146 def printattr(self):
1125 def printattr(self):
1147
1126
1148 print "Project[%s]: name = %s, description = %s" %(self.id,
1127 print 'Project[%s]: name = %s, description = %s' %(self.id,
1149 self.name,
1128 self.name,
1150 self.description)
1129 self.description)
1151
1130
1152 for procUnitConfObj in self.procUnitConfObjDict.values():
1131 for procUnitConfObj in self.procUnitConfObjDict.values():
1153 procUnitConfObj.printattr()
1132 procUnitConfObj.printattr()
1154
1133
1155 def createObjects(self):
1134 def createObjects(self):
1156
1135
1157 for procUnitConfObj in self.procUnitConfObjDict.values():
1136 for procUnitConfObj in self.procUnitConfObjDict.values():
1158 procUnitConfObj.createObjects(self.plotterQueue)
1137 procUnitConfObj.createObjects(self.plotterQueue)
1159
1138
1160 def __connect(self, objIN, thisObj):
1139 def __connect(self, objIN, thisObj):
1161
1140
1162 thisObj.setInput(objIN.getOutputObj())
1141 thisObj.setInput(objIN.getOutputObj())
1163
1142
1164 def connectObjects(self):
1143 def connectObjects(self):
1165
1144
1166 for thisPUConfObj in self.procUnitConfObjDict.values():
1145 for thisPUConfObj in self.procUnitConfObjDict.values():
1167
1146
1168 inputId = thisPUConfObj.getInputId()
1147 inputId = thisPUConfObj.getInputId()
1169
1148
1170 if int(inputId) == 0:
1149 if int(inputId) == 0:
1171 continue
1150 continue
1172
1151
1173 #Get input object
1152 #Get input object
1174 puConfINObj = self.procUnitConfObjDict[inputId]
1153 puConfINObj = self.procUnitConfObjDict[inputId]
1175 puObjIN = puConfINObj.getProcUnitObj()
1154 puObjIN = puConfINObj.getProcUnitObj()
1176
1155
1177 #Get current object
1156 #Get current object
1178 thisPUObj = thisPUConfObj.getProcUnitObj()
1157 thisPUObj = thisPUConfObj.getProcUnitObj()
1179
1158
1180 self.__connect(puObjIN, thisPUObj)
1159 self.__connect(puObjIN, thisPUObj)
1181
1160
1182 def __handleError(self, procUnitConfObj, send_email=True):
1161 def __handleError(self, procUnitConfObj, send_email=False):
1183
1162
1184 import socket
1163 import socket
1185
1164
1186 err = traceback.format_exception(sys.exc_info()[0],
1165 err = traceback.format_exception(sys.exc_info()[0],
1187 sys.exc_info()[1],
1166 sys.exc_info()[1],
1188 sys.exc_info()[2])
1167 sys.exc_info()[2])
1189
1168
1190 print "***** Error occurred in %s *****" %(procUnitConfObj.name)
1169 print '***** Error occurred in %s *****' %(procUnitConfObj.name)
1191 print "***** %s" %err[-1]
1170 print '***** %s' %err[-1]
1192
1171
1193 message = "".join(err)
1172 message = ''.join(err)
1194
1173
1195 sys.stderr.write(message)
1174 sys.stderr.write(message)
1196
1175
1197 if not send_email:
1176 if not send_email:
1198 return
1177 return
1199
1178
1200 subject = "SChain v%s: Error running %s\n" %(schainpy.__version__, procUnitConfObj.name)
1179 subject = 'SChain v%s: Error running %s\n' %(schainpy.__version__, procUnitConfObj.name)
1201
1180
1202 subtitle = "%s: %s\n" %(procUnitConfObj.getElementName() ,procUnitConfObj.name)
1181 subtitle = '%s: %s\n' %(procUnitConfObj.getElementName() ,procUnitConfObj.name)
1203 subtitle += "Hostname: %s\n" %socket.gethostbyname(socket.gethostname())
1182 subtitle += 'Hostname: %s\n' %socket.gethostbyname(socket.gethostname())
1204 subtitle += "Working directory: %s\n" %os.path.abspath("./")
1183 subtitle += 'Working directory: %s\n' %os.path.abspath('./')
1205 subtitle += "Configuration file: %s\n" %self.filename
1184 subtitle += 'Configuration file: %s\n' %self.filename
1206 subtitle += "Time: %s\n" %str(datetime.datetime.now())
1185 subtitle += 'Time: %s\n' %str(datetime.datetime.now())
1207
1186
1208 readUnitConfObj = self.getReadUnitObj()
1187 readUnitConfObj = self.getReadUnitObj()
1209 if readUnitConfObj:
1188 if readUnitConfObj:
1210 subtitle += "\nInput parameters:\n"
1189 subtitle += '\nInput parameters:\n'
1211 subtitle += "[Data path = %s]\n" %readUnitConfObj.path
1190 subtitle += '[Data path = %s]\n' %readUnitConfObj.path
1212 subtitle += "[Data type = %s]\n" %readUnitConfObj.datatype
1191 subtitle += '[Data type = %s]\n' %readUnitConfObj.datatype
1213 subtitle += "[Start date = %s]\n" %readUnitConfObj.startDate
1192 subtitle += '[Start date = %s]\n' %readUnitConfObj.startDate
1214 subtitle += "[End date = %s]\n" %readUnitConfObj.endDate
1193 subtitle += '[End date = %s]\n' %readUnitConfObj.endDate
1215 subtitle += "[Start time = %s]\n" %readUnitConfObj.startTime
1194 subtitle += '[Start time = %s]\n' %readUnitConfObj.startTime
1216 subtitle += "[End time = %s]\n" %readUnitConfObj.endTime
1195 subtitle += '[End time = %s]\n' %readUnitConfObj.endTime
1217
1196
1218 adminObj = schainpy.admin.SchainNotify()
1197 adminObj = schainpy.admin.SchainNotify()
1219 adminObj.sendAlert(message=message,
1198 adminObj.sendAlert(message=message,
1220 subject=subject,
1199 subject=subject,
1221 subtitle=subtitle,
1200 subtitle=subtitle,
1222 filename=self.filename)
1201 filename=self.filename)
1223
1202
1224 def isPaused(self):
1203 def isPaused(self):
1225 return 0
1204 return 0
1226
1205
1227 def isStopped(self):
1206 def isStopped(self):
1228 return 0
1207 return 0
1229
1208
1230 def runController(self):
1209 def runController(self):
1231 """
1210 '''
1232 returns 0 when this process has been stopped, 1 otherwise
1211 returns 0 when this process has been stopped, 1 otherwise
1233 """
1212 '''
1234
1213
1235 if self.isPaused():
1214 if self.isPaused():
1236 print "Process suspended"
1215 print 'Process suspended'
1237
1216
1238 while True:
1217 while True:
1239 sleep(0.1)
1218 time.sleep(0.1)
1240
1219
1241 if not self.isPaused():
1220 if not self.isPaused():
1242 break
1221 break
1243
1222
1244 if self.isStopped():
1223 if self.isStopped():
1245 break
1224 break
1246
1225
1247 print "Process reinitialized"
1226 print 'Process reinitialized'
1248
1227
1249 if self.isStopped():
1228 if self.isStopped():
1250 print "Process stopped"
1229 print 'Process stopped'
1251 return 0
1230 return 0
1252
1231
1253 return 1
1232 return 1
1254
1233
1255 def setFilename(self, filename):
1234 def setFilename(self, filename):
1256
1235
1257 self.filename = filename
1236 self.filename = filename
1258
1237
1259 def setPlotterQueue(self, plotter_queue):
1238 def setPlotterQueue(self, plotter_queue):
1260
1239
1261 raise NotImplementedError, "Use schainpy.controller_api.ControllerThread instead Project class"
1240 raise NotImplementedError, 'Use schainpy.controller_api.ControllerThread instead Project class'
1262
1241
1263 def getPlotterQueue(self):
1242 def getPlotterQueue(self):
1264
1243
1265 raise NotImplementedError, "Use schainpy.controller_api.ControllerThread instead Project class"
1244 raise NotImplementedError, 'Use schainpy.controller_api.ControllerThread instead Project class'
1266
1245
1267 def useExternalPlotter(self):
1246 def useExternalPlotter(self):
1268
1247
1269 raise NotImplementedError, "Use schainpy.controller_api.ControllerThread instead Project class"
1248 raise NotImplementedError, 'Use schainpy.controller_api.ControllerThread instead Project class'
1270
1249
1250 def run(self):
1271
1251
1272 def run(self, filename=None):
1252 log.success('Starting {}'.format(self.name))
1273
1253
1274 # self.writeXml(filename)
1275 self.createObjects()
1254 self.createObjects()
1276 self.connectObjects()
1255 self.connectObjects()
1277
1256
1278 print
1279 print "*"*60
1280 print " Starting SIGNAL CHAIN PROCESSING v%s " %schainpy.__version__
1281 print "*"*60
1282 print
1283
1284 keyList = self.procUnitConfObjDict.keys()
1257 keyList = self.procUnitConfObjDict.keys()
1285 keyList.sort()
1258 keyList.sort()
1286
1259
1287 while(True):
1260 while(True):
1288
1261
1289 is_ok = False
1262 is_ok = False
1290
1263
1291 for procKey in keyList:
1264 for procKey in keyList:
1292 # print "Running the '%s' process with %s" %(procUnitConfObj.name, procUnitConfObj.id)
1293
1265
1294 procUnitConfObj = self.procUnitConfObjDict[procKey]
1266 procUnitConfObj = self.procUnitConfObjDict[procKey]
1295
1267
1296 try:
1268 try:
1297 sts = procUnitConfObj.run()
1269 sts = procUnitConfObj.run()
1298 is_ok = is_ok or sts
1270 is_ok = is_ok or sts
1299 except KeyboardInterrupt:
1271 except KeyboardInterrupt:
1300 is_ok = False
1272 is_ok = False
1301 break
1273 break
1302 except ValueError, e:
1274 except ValueError, e:
1303 sleep(0.5)
1275 time.sleep(0.5)
1304 self.__handleError(procUnitConfObj, send_email=True)
1276 self.__handleError(procUnitConfObj, send_email=True)
1305 is_ok = False
1277 is_ok = False
1306 break
1278 break
1307 except:
1279 except:
1308 sleep(0.5)
1280 time.sleep(0.5)
1309 self.__handleError(procUnitConfObj)
1281 self.__handleError(procUnitConfObj)
1310 is_ok = False
1282 is_ok = False
1311 break
1283 break
1312
1284
1313 #If every process unit finished so end process
1285 #If every process unit finished so end process
1314 if not(is_ok):
1286 if not(is_ok):
1315 # print "Every process unit have finished"
1316 break
1287 break
1317
1288
1318 if not self.runController():
1289 if not self.runController():
1319 break
1290 break
1320
1291
1321 #Closing every process
1292 #Closing every process
1322 for procKey in keyList:
1293 for procKey in keyList:
1323 procUnitConfObj = self.procUnitConfObjDict[procKey]
1294 procUnitConfObj = self.procUnitConfObjDict[procKey]
1324 procUnitConfObj.close()
1295 procUnitConfObj.close()
1296
1297 log.success('{} finished'.format(self.name))
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1 '''
1 '''
2
2
3 $Author: murco $
3 $Author: murco $
4 $Id: JROData.py 173 2012-11-20 15:06:21Z murco $
4 $Id: JROData.py 173 2012-11-20 15:06:21Z murco $
5 '''
5 '''
6
6
7 import copy
7 import copy
8 import numpy
8 import numpy
9 import datetime
9 import datetime
10
10
11 from jroheaderIO import SystemHeader, RadarControllerHeader
11 from jroheaderIO import SystemHeader, RadarControllerHeader
12 from schainpy import cSchain
12 from schainpy import cSchain
13
13
14
14
15 def getNumpyDtype(dataTypeCode):
15 def getNumpyDtype(dataTypeCode):
16
16
17 if dataTypeCode == 0:
17 if dataTypeCode == 0:
18 numpyDtype = numpy.dtype([('real','<i1'),('imag','<i1')])
18 numpyDtype = numpy.dtype([('real','<i1'),('imag','<i1')])
19 elif dataTypeCode == 1:
19 elif dataTypeCode == 1:
20 numpyDtype = numpy.dtype([('real','<i2'),('imag','<i2')])
20 numpyDtype = numpy.dtype([('real','<i2'),('imag','<i2')])
21 elif dataTypeCode == 2:
21 elif dataTypeCode == 2:
22 numpyDtype = numpy.dtype([('real','<i4'),('imag','<i4')])
22 numpyDtype = numpy.dtype([('real','<i4'),('imag','<i4')])
23 elif dataTypeCode == 3:
23 elif dataTypeCode == 3:
24 numpyDtype = numpy.dtype([('real','<i8'),('imag','<i8')])
24 numpyDtype = numpy.dtype([('real','<i8'),('imag','<i8')])
25 elif dataTypeCode == 4:
25 elif dataTypeCode == 4:
26 numpyDtype = numpy.dtype([('real','<f4'),('imag','<f4')])
26 numpyDtype = numpy.dtype([('real','<f4'),('imag','<f4')])
27 elif dataTypeCode == 5:
27 elif dataTypeCode == 5:
28 numpyDtype = numpy.dtype([('real','<f8'),('imag','<f8')])
28 numpyDtype = numpy.dtype([('real','<f8'),('imag','<f8')])
29 else:
29 else:
30 raise ValueError, 'dataTypeCode was not defined'
30 raise ValueError, 'dataTypeCode was not defined'
31
31
32 return numpyDtype
32 return numpyDtype
33
33
34 def getDataTypeCode(numpyDtype):
34 def getDataTypeCode(numpyDtype):
35
35
36 if numpyDtype == numpy.dtype([('real','<i1'),('imag','<i1')]):
36 if numpyDtype == numpy.dtype([('real','<i1'),('imag','<i1')]):
37 datatype = 0
37 datatype = 0
38 elif numpyDtype == numpy.dtype([('real','<i2'),('imag','<i2')]):
38 elif numpyDtype == numpy.dtype([('real','<i2'),('imag','<i2')]):
39 datatype = 1
39 datatype = 1
40 elif numpyDtype == numpy.dtype([('real','<i4'),('imag','<i4')]):
40 elif numpyDtype == numpy.dtype([('real','<i4'),('imag','<i4')]):
41 datatype = 2
41 datatype = 2
42 elif numpyDtype == numpy.dtype([('real','<i8'),('imag','<i8')]):
42 elif numpyDtype == numpy.dtype([('real','<i8'),('imag','<i8')]):
43 datatype = 3
43 datatype = 3
44 elif numpyDtype == numpy.dtype([('real','<f4'),('imag','<f4')]):
44 elif numpyDtype == numpy.dtype([('real','<f4'),('imag','<f4')]):
45 datatype = 4
45 datatype = 4
46 elif numpyDtype == numpy.dtype([('real','<f8'),('imag','<f8')]):
46 elif numpyDtype == numpy.dtype([('real','<f8'),('imag','<f8')]):
47 datatype = 5
47 datatype = 5
48 else:
48 else:
49 datatype = None
49 datatype = None
50
50
51 return datatype
51 return datatype
52
52
53 def hildebrand_sekhon(data, navg):
53 def hildebrand_sekhon(data, navg):
54 """
54 """
55 This method is for the objective determination of the noise level in Doppler spectra. This
55 This method is for the objective determination of the noise level in Doppler spectra. This
56 implementation technique is based on the fact that the standard deviation of the spectral
56 implementation technique is based on the fact that the standard deviation of the spectral
57 densities is equal to the mean spectral density for white Gaussian noise
57 densities is equal to the mean spectral density for white Gaussian noise
58
58
59 Inputs:
59 Inputs:
60 Data : heights
60 Data : heights
61 navg : numbers of averages
61 navg : numbers of averages
62
62
63 Return:
63 Return:
64 -1 : any error
64 -1 : any error
65 anoise : noise's level
65 anoise : noise's level
66 """
66 """
67
67
68 sortdata = numpy.sort(data, axis=None)
68 sortdata = numpy.sort(data, axis=None)
69 # lenOfData = len(sortdata)
69 # lenOfData = len(sortdata)
70 # nums_min = lenOfData*0.2
70 # nums_min = lenOfData*0.2
71 #
71 #
72 # if nums_min <= 5:
72 # if nums_min <= 5:
73 # nums_min = 5
73 # nums_min = 5
74 #
74 #
75 # sump = 0.
75 # sump = 0.
76 #
76 #
77 # sumq = 0.
77 # sumq = 0.
78 #
78 #
79 # j = 0
79 # j = 0
80 #
80 #
81 # cont = 1
81 # cont = 1
82 #
82 #
83 # while((cont==1)and(j<lenOfData)):
83 # while((cont==1)and(j<lenOfData)):
84 #
84 #
85 # sump += sortdata[j]
85 # sump += sortdata[j]
86 #
86 #
87 # sumq += sortdata[j]**2
87 # sumq += sortdata[j]**2
88 #
88 #
89 # if j > nums_min:
89 # if j > nums_min:
90 # rtest = float(j)/(j-1) + 1.0/navg
90 # rtest = float(j)/(j-1) + 1.0/navg
91 # if ((sumq*j) > (rtest*sump**2)):
91 # if ((sumq*j) > (rtest*sump**2)):
92 # j = j - 1
92 # j = j - 1
93 # sump = sump - sortdata[j]
93 # sump = sump - sortdata[j]
94 # sumq = sumq - sortdata[j]**2
94 # sumq = sumq - sortdata[j]**2
95 # cont = 0
95 # cont = 0
96 #
96 #
97 # j += 1
97 # j += 1
98 #
98 #
99 # lnoise = sump /j
99 # lnoise = sump /j
100 #
100 #
101 # return lnoise
101 # return lnoise
102
102
103 return cSchain.hildebrand_sekhon(sortdata, navg)
103 return cSchain.hildebrand_sekhon(sortdata, navg)
104
104
105
105
106 class Beam:
106 class Beam:
107
107
108 def __init__(self):
108 def __init__(self):
109 self.codeList = []
109 self.codeList = []
110 self.azimuthList = []
110 self.azimuthList = []
111 self.zenithList = []
111 self.zenithList = []
112
112
113 class GenericData(object):
113 class GenericData(object):
114
114
115 flagNoData = True
115 flagNoData = True
116
116
117 def copy(self, inputObj=None):
117 def copy(self, inputObj=None):
118
118
119 if inputObj == None:
119 if inputObj == None:
120 return copy.deepcopy(self)
120 return copy.deepcopy(self)
121
121
122 for key in inputObj.__dict__.keys():
122 for key in inputObj.__dict__.keys():
123
123
124 attribute = inputObj.__dict__[key]
124 attribute = inputObj.__dict__[key]
125
125
126 #If this attribute is a tuple or list
126 #If this attribute is a tuple or list
127 if type(inputObj.__dict__[key]) in (tuple, list):
127 if type(inputObj.__dict__[key]) in (tuple, list):
128 self.__dict__[key] = attribute[:]
128 self.__dict__[key] = attribute[:]
129 continue
129 continue
130
130
131 #If this attribute is another object or instance
131 #If this attribute is another object or instance
132 if hasattr(attribute, '__dict__'):
132 if hasattr(attribute, '__dict__'):
133 self.__dict__[key] = attribute.copy()
133 self.__dict__[key] = attribute.copy()
134 continue
134 continue
135
135
136 self.__dict__[key] = inputObj.__dict__[key]
136 self.__dict__[key] = inputObj.__dict__[key]
137
137
138 def deepcopy(self):
138 def deepcopy(self):
139
139
140 return copy.deepcopy(self)
140 return copy.deepcopy(self)
141
141
142 def isEmpty(self):
142 def isEmpty(self):
143
143
144 return self.flagNoData
144 return self.flagNoData
145
145
146 class JROData(GenericData):
146 class JROData(GenericData):
147
147
148 # m_BasicHeader = BasicHeader()
148 # m_BasicHeader = BasicHeader()
149 # m_ProcessingHeader = ProcessingHeader()
149 # m_ProcessingHeader = ProcessingHeader()
150
150
151 systemHeaderObj = SystemHeader()
151 systemHeaderObj = SystemHeader()
152
152
153 radarControllerHeaderObj = RadarControllerHeader()
153 radarControllerHeaderObj = RadarControllerHeader()
154
154
155 # data = None
155 # data = None
156
156
157 type = None
157 type = None
158
158
159 datatype = None #dtype but in string
159 datatype = None #dtype but in string
160
160
161 # dtype = None
161 # dtype = None
162
162
163 # nChannels = None
163 # nChannels = None
164
164
165 # nHeights = None
165 # nHeights = None
166
166
167 nProfiles = None
167 nProfiles = None
168
168
169 heightList = None
169 heightList = None
170
170
171 channelList = None
171 channelList = None
172
172
173 flagDiscontinuousBlock = False
173 flagDiscontinuousBlock = False
174
174
175 useLocalTime = False
175 useLocalTime = False
176
176
177 utctime = None
177 utctime = None
178
178
179 timeZone = None
179 timeZone = None
180
180
181 dstFlag = None
181 dstFlag = None
182
182
183 errorCount = None
183 errorCount = None
184
184
185 blocksize = None
185 blocksize = None
186
186
187 # nCode = None
187 # nCode = None
188 #
188 #
189 # nBaud = None
189 # nBaud = None
190 #
190 #
191 # code = None
191 # code = None
192
192
193 flagDecodeData = False #asumo q la data no esta decodificada
193 flagDecodeData = False #asumo q la data no esta decodificada
194
194
195 flagDeflipData = False #asumo q la data no esta sin flip
195 flagDeflipData = False #asumo q la data no esta sin flip
196
196
197 flagShiftFFT = False
197 flagShiftFFT = False
198
198
199 # ippSeconds = None
199 # ippSeconds = None
200
200
201 # timeInterval = None
201 # timeInterval = None
202
202
203 nCohInt = None
203 nCohInt = None
204
204
205 # noise = None
205 # noise = None
206
206
207 windowOfFilter = 1
207 windowOfFilter = 1
208
208
209 #Speed of ligth
209 #Speed of ligth
210 C = 3e8
210 C = 3e8
211
211
212 frequency = 49.92e6
212 frequency = 49.92e6
213
213
214 realtime = False
214 realtime = False
215
215
216 beacon_heiIndexList = None
216 beacon_heiIndexList = None
217
217
218 last_block = None
218 last_block = None
219
219
220 blocknow = None
220 blocknow = None
221
221
222 azimuth = None
222 azimuth = None
223
223
224 zenith = None
224 zenith = None
225
225
226 beam = Beam()
226 beam = Beam()
227
227
228 profileIndex = None
228 profileIndex = None
229
229
230 def getNoise(self):
230 def getNoise(self):
231
231
232 raise NotImplementedError
232 raise NotImplementedError
233
233
234 def getNChannels(self):
234 def getNChannels(self):
235
235
236 return len(self.channelList)
236 return len(self.channelList)
237
237
238 def getChannelIndexList(self):
238 def getChannelIndexList(self):
239
239
240 return range(self.nChannels)
240 return range(self.nChannels)
241
241
242 def getNHeights(self):
242 def getNHeights(self):
243
243
244 return len(self.heightList)
244 return len(self.heightList)
245
245
246 def getHeiRange(self, extrapoints=0):
246 def getHeiRange(self, extrapoints=0):
247
247
248 heis = self.heightList
248 heis = self.heightList
249 # deltah = self.heightList[1] - self.heightList[0]
249 # deltah = self.heightList[1] - self.heightList[0]
250 #
250 #
251 # heis.append(self.heightList[-1])
251 # heis.append(self.heightList[-1])
252
252
253 return heis
253 return heis
254
254
255 def getDeltaH(self):
255 def getDeltaH(self):
256
256
257 delta = self.heightList[1] - self.heightList[0]
257 delta = self.heightList[1] - self.heightList[0]
258
258
259 return delta
259 return delta
260
260
261 def getltctime(self):
261 def getltctime(self):
262
262
263 if self.useLocalTime:
263 if self.useLocalTime:
264 return self.utctime - self.timeZone*60
264 return self.utctime - self.timeZone*60
265
265
266 return self.utctime
266 return self.utctime
267
267
268 def getDatatime(self):
268 def getDatatime(self):
269
269
270 datatimeValue = datetime.datetime.utcfromtimestamp(self.ltctime)
270 datatimeValue = datetime.datetime.utcfromtimestamp(self.ltctime)
271 return datatimeValue
271 return datatimeValue
272
272
273 def getTimeRange(self):
273 def getTimeRange(self):
274
274
275 datatime = []
275 datatime = []
276
276
277 datatime.append(self.ltctime)
277 datatime.append(self.ltctime)
278 datatime.append(self.ltctime + self.timeInterval+1)
278 datatime.append(self.ltctime + self.timeInterval+1)
279
279
280 datatime = numpy.array(datatime)
280 datatime = numpy.array(datatime)
281
281
282 return datatime
282 return datatime
283
283
284 def getFmaxTimeResponse(self):
284 def getFmaxTimeResponse(self):
285
285
286 period = (10**-6)*self.getDeltaH()/(0.15)
286 period = (10**-6)*self.getDeltaH()/(0.15)
287
287
288 PRF = 1./(period * self.nCohInt)
288 PRF = 1./(period * self.nCohInt)
289
289
290 fmax = PRF
290 fmax = PRF
291
291
292 return fmax
292 return fmax
293
293
294 def getFmax(self):
294 def getFmax(self):
295 PRF = 1./(self.ippSeconds * self.nCohInt)
295 PRF = 1./(self.ippSeconds * self.nCohInt)
296
296
297 fmax = PRF
297 fmax = PRF
298 return fmax
298 return fmax
299
299
300 def getVmax(self):
300 def getVmax(self):
301
301
302 _lambda = self.C/self.frequency
302 _lambda = self.C/self.frequency
303
303
304 vmax = self.getFmax() * _lambda/2
304 vmax = self.getFmax() * _lambda/2
305
305
306 return vmax
306 return vmax
307
307
308 def get_ippSeconds(self):
308 def get_ippSeconds(self):
309 '''
309 '''
310 '''
310 '''
311 return self.radarControllerHeaderObj.ippSeconds
311 return self.radarControllerHeaderObj.ippSeconds
312
312
313 def set_ippSeconds(self, ippSeconds):
313 def set_ippSeconds(self, ippSeconds):
314 '''
314 '''
315 '''
315 '''
316
316
317 self.radarControllerHeaderObj.ippSeconds = ippSeconds
317 self.radarControllerHeaderObj.ippSeconds = ippSeconds
318
318
319 return
319 return
320
320
321 def get_dtype(self):
321 def get_dtype(self):
322 '''
322 '''
323 '''
323 '''
324 return getNumpyDtype(self.datatype)
324 return getNumpyDtype(self.datatype)
325
325
326 def set_dtype(self, numpyDtype):
326 def set_dtype(self, numpyDtype):
327 '''
327 '''
328 '''
328 '''
329
329
330 self.datatype = getDataTypeCode(numpyDtype)
330 self.datatype = getDataTypeCode(numpyDtype)
331
331
332 def get_code(self):
332 def get_code(self):
333 '''
333 '''
334 '''
334 '''
335 return self.radarControllerHeaderObj.code
335 return self.radarControllerHeaderObj.code
336
336
337 def set_code(self, code):
337 def set_code(self, code):
338 '''
338 '''
339 '''
339 '''
340 self.radarControllerHeaderObj.code = code
340 self.radarControllerHeaderObj.code = code
341
341
342 return
342 return
343
343
344 def get_ncode(self):
344 def get_ncode(self):
345 '''
345 '''
346 '''
346 '''
347 return self.radarControllerHeaderObj.nCode
347 return self.radarControllerHeaderObj.nCode
348
348
349 def set_ncode(self, nCode):
349 def set_ncode(self, nCode):
350 '''
350 '''
351 '''
351 '''
352 self.radarControllerHeaderObj.nCode = nCode
352 self.radarControllerHeaderObj.nCode = nCode
353
353
354 return
354 return
355
355
356 def get_nbaud(self):
356 def get_nbaud(self):
357 '''
357 '''
358 '''
358 '''
359 return self.radarControllerHeaderObj.nBaud
359 return self.radarControllerHeaderObj.nBaud
360
360
361 def set_nbaud(self, nBaud):
361 def set_nbaud(self, nBaud):
362 '''
362 '''
363 '''
363 '''
364 self.radarControllerHeaderObj.nBaud = nBaud
364 self.radarControllerHeaderObj.nBaud = nBaud
365
365
366 return
366 return
367
367
368 nChannels = property(getNChannels, "I'm the 'nChannel' property.")
368 nChannels = property(getNChannels, "I'm the 'nChannel' property.")
369 channelIndexList = property(getChannelIndexList, "I'm the 'channelIndexList' property.")
369 channelIndexList = property(getChannelIndexList, "I'm the 'channelIndexList' property.")
370 nHeights = property(getNHeights, "I'm the 'nHeights' property.")
370 nHeights = property(getNHeights, "I'm the 'nHeights' property.")
371 #noise = property(getNoise, "I'm the 'nHeights' property.")
371 #noise = property(getNoise, "I'm the 'nHeights' property.")
372 datatime = property(getDatatime, "I'm the 'datatime' property")
372 datatime = property(getDatatime, "I'm the 'datatime' property")
373 ltctime = property(getltctime, "I'm the 'ltctime' property")
373 ltctime = property(getltctime, "I'm the 'ltctime' property")
374 ippSeconds = property(get_ippSeconds, set_ippSeconds)
374 ippSeconds = property(get_ippSeconds, set_ippSeconds)
375 dtype = property(get_dtype, set_dtype)
375 dtype = property(get_dtype, set_dtype)
376 # timeInterval = property(getTimeInterval, "I'm the 'timeInterval' property")
376 # timeInterval = property(getTimeInterval, "I'm the 'timeInterval' property")
377 code = property(get_code, set_code)
377 code = property(get_code, set_code)
378 nCode = property(get_ncode, set_ncode)
378 nCode = property(get_ncode, set_ncode)
379 nBaud = property(get_nbaud, set_nbaud)
379 nBaud = property(get_nbaud, set_nbaud)
380
380
381 class Voltage(JROData):
381 class Voltage(JROData):
382
382
383 #data es un numpy array de 2 dmensiones (canales, alturas)
383 #data es un numpy array de 2 dmensiones (canales, alturas)
384 data = None
384 data = None
385
385
386 def __init__(self):
386 def __init__(self):
387 '''
387 '''
388 Constructor
388 Constructor
389 '''
389 '''
390
390
391 self.useLocalTime = True
391 self.useLocalTime = True
392
392
393 self.radarControllerHeaderObj = RadarControllerHeader()
393 self.radarControllerHeaderObj = RadarControllerHeader()
394
394
395 self.systemHeaderObj = SystemHeader()
395 self.systemHeaderObj = SystemHeader()
396
396
397 self.type = "Voltage"
397 self.type = "Voltage"
398
398
399 self.data = None
399 self.data = None
400
400
401 # self.dtype = None
401 # self.dtype = None
402
402
403 # self.nChannels = 0
403 # self.nChannels = 0
404
404
405 # self.nHeights = 0
405 # self.nHeights = 0
406
406
407 self.nProfiles = None
407 self.nProfiles = None
408
408
409 self.heightList = None
409 self.heightList = None
410
410
411 self.channelList = None
411 self.channelList = None
412
412
413 # self.channelIndexList = None
413 # self.channelIndexList = None
414
414
415 self.flagNoData = True
415 self.flagNoData = True
416
416
417 self.flagDiscontinuousBlock = False
417 self.flagDiscontinuousBlock = False
418
418
419 self.utctime = None
419 self.utctime = None
420
420
421 self.timeZone = None
421 self.timeZone = None
422
422
423 self.dstFlag = None
423 self.dstFlag = None
424
424
425 self.errorCount = None
425 self.errorCount = None
426
426
427 self.nCohInt = None
427 self.nCohInt = None
428
428
429 self.blocksize = None
429 self.blocksize = None
430
430
431 self.flagDecodeData = False #asumo q la data no esta decodificada
431 self.flagDecodeData = False #asumo q la data no esta decodificada
432
432
433 self.flagDeflipData = False #asumo q la data no esta sin flip
433 self.flagDeflipData = False #asumo q la data no esta sin flip
434
434
435 self.flagShiftFFT = False
435 self.flagShiftFFT = False
436
436
437 self.flagDataAsBlock = False #Asumo que la data es leida perfil a perfil
437 self.flagDataAsBlock = False #Asumo que la data es leida perfil a perfil
438
438
439 self.profileIndex = 0
439 self.profileIndex = 0
440
440
441 def getNoisebyHildebrand(self, channel = None):
441 def getNoisebyHildebrand(self, channel = None):
442 """
442 """
443 Determino el nivel de ruido usando el metodo Hildebrand-Sekhon
443 Determino el nivel de ruido usando el metodo Hildebrand-Sekhon
444
444
445 Return:
445 Return:
446 noiselevel
446 noiselevel
447 """
447 """
448
448
449 if channel != None:
449 if channel != None:
450 data = self.data[channel]
450 data = self.data[channel]
451 nChannels = 1
451 nChannels = 1
452 else:
452 else:
453 data = self.data
453 data = self.data
454 nChannels = self.nChannels
454 nChannels = self.nChannels
455
455
456 noise = numpy.zeros(nChannels)
456 noise = numpy.zeros(nChannels)
457 power = data * numpy.conjugate(data)
457 power = data * numpy.conjugate(data)
458
458
459 for thisChannel in range(nChannels):
459 for thisChannel in range(nChannels):
460 if nChannels == 1:
460 if nChannels == 1:
461 daux = power[:].real
461 daux = power[:].real
462 else:
462 else:
463 daux = power[thisChannel,:].real
463 daux = power[thisChannel,:].real
464 noise[thisChannel] = hildebrand_sekhon(daux, self.nCohInt)
464 noise[thisChannel] = hildebrand_sekhon(daux, self.nCohInt)
465
465
466 return noise
466 return noise
467
467
468 def getNoise(self, type = 1, channel = None):
468 def getNoise(self, type = 1, channel = None):
469
469
470 if type == 1:
470 if type == 1:
471 noise = self.getNoisebyHildebrand(channel)
471 noise = self.getNoisebyHildebrand(channel)
472
472
473 return noise
473 return noise
474
474
475 def getPower(self, channel = None):
475 def getPower(self, channel = None):
476
476
477 if channel != None:
477 if channel != None:
478 data = self.data[channel]
478 data = self.data[channel]
479 else:
479 else:
480 data = self.data
480 data = self.data
481
481
482 power = data * numpy.conjugate(data)
482 power = data * numpy.conjugate(data)
483 powerdB = 10*numpy.log10(power.real)
483 powerdB = 10*numpy.log10(power.real)
484 powerdB = numpy.squeeze(powerdB)
484 powerdB = numpy.squeeze(powerdB)
485
485
486 return powerdB
486 return powerdB
487
487
488 def getTimeInterval(self):
488 def getTimeInterval(self):
489
489
490 timeInterval = self.ippSeconds * self.nCohInt
490 timeInterval = self.ippSeconds * self.nCohInt
491
491
492 return timeInterval
492 return timeInterval
493
493
494 noise = property(getNoise, "I'm the 'nHeights' property.")
494 noise = property(getNoise, "I'm the 'nHeights' property.")
495 timeInterval = property(getTimeInterval, "I'm the 'timeInterval' property")
495 timeInterval = property(getTimeInterval, "I'm the 'timeInterval' property")
496
496
497 class Spectra(JROData):
497 class Spectra(JROData):
498
498
499 #data spc es un numpy array de 2 dmensiones (canales, perfiles, alturas)
499 #data spc es un numpy array de 2 dmensiones (canales, perfiles, alturas)
500 data_spc = None
500 data_spc = None
501
501
502 #data cspc es un numpy array de 2 dmensiones (canales, pares, alturas)
502 #data cspc es un numpy array de 2 dmensiones (canales, pares, alturas)
503 data_cspc = None
503 data_cspc = None
504
504
505 #data dc es un numpy array de 2 dmensiones (canales, alturas)
505 #data dc es un numpy array de 2 dmensiones (canales, alturas)
506 data_dc = None
506 data_dc = None
507
507
508 #data power
508 #data power
509 data_pwr = None
509 data_pwr = None
510
510
511 nFFTPoints = None
511 nFFTPoints = None
512
512
513 # nPairs = None
513 # nPairs = None
514
514
515 pairsList = None
515 pairsList = None
516
516
517 nIncohInt = None
517 nIncohInt = None
518
518
519 wavelength = None #Necesario para cacular el rango de velocidad desde la frecuencia
519 wavelength = None #Necesario para cacular el rango de velocidad desde la frecuencia
520
520
521 nCohInt = None #se requiere para determinar el valor de timeInterval
521 nCohInt = None #se requiere para determinar el valor de timeInterval
522
522
523 ippFactor = None
523 ippFactor = None
524
524
525 profileIndex = 0
525 profileIndex = 0
526
526
527 plotting = "spectra"
527 plotting = "spectra"
528
528
529 def __init__(self):
529 def __init__(self):
530 '''
530 '''
531 Constructor
531 Constructor
532 '''
532 '''
533
533
534 self.useLocalTime = True
534 self.useLocalTime = True
535
535
536 self.radarControllerHeaderObj = RadarControllerHeader()
536 self.radarControllerHeaderObj = RadarControllerHeader()
537
537
538 self.systemHeaderObj = SystemHeader()
538 self.systemHeaderObj = SystemHeader()
539
539
540 self.type = "Spectra"
540 self.type = "Spectra"
541
541
542 # self.data = None
542 # self.data = None
543
543
544 # self.dtype = None
544 # self.dtype = None
545
545
546 # self.nChannels = 0
546 # self.nChannels = 0
547
547
548 # self.nHeights = 0
548 # self.nHeights = 0
549
549
550 self.nProfiles = None
550 self.nProfiles = None
551
551
552 self.heightList = None
552 self.heightList = None
553
553
554 self.channelList = None
554 self.channelList = None
555
555
556 # self.channelIndexList = None
556 # self.channelIndexList = None
557
557
558 self.pairsList = None
558 self.pairsList = None
559
559
560 self.flagNoData = True
560 self.flagNoData = True
561
561
562 self.flagDiscontinuousBlock = False
562 self.flagDiscontinuousBlock = False
563
563
564 self.utctime = None
564 self.utctime = None
565
565
566 self.nCohInt = None
566 self.nCohInt = None
567
567
568 self.nIncohInt = None
568 self.nIncohInt = None
569
569
570 self.blocksize = None
570 self.blocksize = None
571
571
572 self.nFFTPoints = None
572 self.nFFTPoints = None
573
573
574 self.wavelength = None
574 self.wavelength = None
575
575
576 self.flagDecodeData = False #asumo q la data no esta decodificada
576 self.flagDecodeData = False #asumo q la data no esta decodificada
577
577
578 self.flagDeflipData = False #asumo q la data no esta sin flip
578 self.flagDeflipData = False #asumo q la data no esta sin flip
579
579
580 self.flagShiftFFT = False
580 self.flagShiftFFT = False
581
581
582 self.ippFactor = 1
582 self.ippFactor = 1
583
583
584 #self.noise = None
584 #self.noise = None
585
585
586 self.beacon_heiIndexList = []
586 self.beacon_heiIndexList = []
587
587
588 self.noise_estimation = None
588 self.noise_estimation = None
589
589
590
590
591 def getNoisebyHildebrand(self, xmin_index=None, xmax_index=None, ymin_index=None, ymax_index=None):
591 def getNoisebyHildebrand(self, xmin_index=None, xmax_index=None, ymin_index=None, ymax_index=None):
592 """
592 """
593 Determino el nivel de ruido usando el metodo Hildebrand-Sekhon
593 Determino el nivel de ruido usando el metodo Hildebrand-Sekhon
594
594
595 Return:
595 Return:
596 noiselevel
596 noiselevel
597 """
597 """
598
598
599 noise = numpy.zeros(self.nChannels)
599 noise = numpy.zeros(self.nChannels)
600
600
601 for channel in range(self.nChannels):
601 for channel in range(self.nChannels):
602 daux = self.data_spc[channel,xmin_index:xmax_index,ymin_index:ymax_index]
602 daux = self.data_spc[channel,xmin_index:xmax_index,ymin_index:ymax_index]
603 noise[channel] = hildebrand_sekhon(daux, self.nIncohInt)
603 noise[channel] = hildebrand_sekhon(daux, self.nIncohInt)
604
604
605 return noise
605 return noise
606
606
607 def getNoise(self, xmin_index=None, xmax_index=None, ymin_index=None, ymax_index=None):
607 def getNoise(self, xmin_index=None, xmax_index=None, ymin_index=None, ymax_index=None):
608
608
609 if self.noise_estimation is not None:
609 if self.noise_estimation is not None:
610 return self.noise_estimation #this was estimated by getNoise Operation defined in jroproc_spectra.py
610 return self.noise_estimation #this was estimated by getNoise Operation defined in jroproc_spectra.py
611 else:
611 else:
612 noise = self.getNoisebyHildebrand(xmin_index, xmax_index, ymin_index, ymax_index)
612 noise = self.getNoisebyHildebrand(xmin_index, xmax_index, ymin_index, ymax_index)
613 return noise
613 return noise
614
614
615 def getFreqRangeTimeResponse(self, extrapoints=0):
615 def getFreqRangeTimeResponse(self, extrapoints=0):
616
616
617 deltafreq = self.getFmaxTimeResponse() / (self.nFFTPoints*self.ippFactor)
617 deltafreq = self.getFmaxTimeResponse() / (self.nFFTPoints*self.ippFactor)
618 freqrange = deltafreq*(numpy.arange(self.nFFTPoints+extrapoints)-self.nFFTPoints/2.) - deltafreq/2
618 freqrange = deltafreq*(numpy.arange(self.nFFTPoints+extrapoints)-self.nFFTPoints/2.) - deltafreq/2
619
619
620 return freqrange
620 return freqrange
621
621
622 def getAcfRange(self, extrapoints=0):
622 def getAcfRange(self, extrapoints=0):
623
623
624 deltafreq = 10./(self.getFmax() / (self.nFFTPoints*self.ippFactor))
624 deltafreq = 10./(self.getFmax() / (self.nFFTPoints*self.ippFactor))
625 freqrange = deltafreq*(numpy.arange(self.nFFTPoints+extrapoints)-self.nFFTPoints/2.) - deltafreq/2
625 freqrange = deltafreq*(numpy.arange(self.nFFTPoints+extrapoints)-self.nFFTPoints/2.) - deltafreq/2
626
626
627 return freqrange
627 return freqrange
628
628
629 def getFreqRange(self, extrapoints=0):
629 def getFreqRange(self, extrapoints=0):
630
630
631 deltafreq = self.getFmax() / (self.nFFTPoints*self.ippFactor)
631 deltafreq = self.getFmax() / (self.nFFTPoints*self.ippFactor)
632 freqrange = deltafreq*(numpy.arange(self.nFFTPoints+extrapoints)-self.nFFTPoints/2.) - deltafreq/2
632 freqrange = deltafreq*(numpy.arange(self.nFFTPoints+extrapoints)-self.nFFTPoints/2.) - deltafreq/2
633
633
634 return freqrange
634 return freqrange
635
635
636 def getVelRange(self, extrapoints=0):
636 def getVelRange(self, extrapoints=0):
637
637
638 deltav = self.getVmax() / (self.nFFTPoints*self.ippFactor)
638 deltav = self.getVmax() / (self.nFFTPoints*self.ippFactor)
639 velrange = deltav*(numpy.arange(self.nFFTPoints+extrapoints)-self.nFFTPoints/2.) #- deltav/2
639 velrange = deltav*(numpy.arange(self.nFFTPoints+extrapoints)-self.nFFTPoints/2.) #- deltav/2
640
640
641 return velrange
641 return velrange
642
642
643 def getNPairs(self):
643 def getNPairs(self):
644
644
645 return len(self.pairsList)
645 return len(self.pairsList)
646
646
647 def getPairsIndexList(self):
647 def getPairsIndexList(self):
648
648
649 return range(self.nPairs)
649 return range(self.nPairs)
650
650
651 def getNormFactor(self):
651 def getNormFactor(self):
652
652
653 pwcode = 1
653 pwcode = 1
654
654
655 if self.flagDecodeData:
655 if self.flagDecodeData:
656 pwcode = numpy.sum(self.code[0]**2)
656 pwcode = numpy.sum(self.code[0]**2)
657 #normFactor = min(self.nFFTPoints,self.nProfiles)*self.nIncohInt*self.nCohInt*pwcode*self.windowOfFilter
657 #normFactor = min(self.nFFTPoints,self.nProfiles)*self.nIncohInt*self.nCohInt*pwcode*self.windowOfFilter
658 normFactor = self.nProfiles*self.nIncohInt*self.nCohInt*pwcode*self.windowOfFilter
658 normFactor = self.nProfiles*self.nIncohInt*self.nCohInt*pwcode*self.windowOfFilter
659
659
660 return normFactor
660 return normFactor
661
661
662 def getFlagCspc(self):
662 def getFlagCspc(self):
663
663
664 if self.data_cspc is None:
664 if self.data_cspc is None:
665 return True
665 return True
666
666
667 return False
667 return False
668
668
669 def getFlagDc(self):
669 def getFlagDc(self):
670
670
671 if self.data_dc is None:
671 if self.data_dc is None:
672 return True
672 return True
673
673
674 return False
674 return False
675
675
676 def getTimeInterval(self):
676 def getTimeInterval(self):
677
677
678 timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt * self.nProfiles
678 timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt * self.nProfiles
679
679
680 return timeInterval
680 return timeInterval
681
681
682 def getPower(self):
682 def getPower(self):
683
683
684 factor = self.normFactor
684 factor = self.normFactor
685 z = self.data_spc/factor
685 z = self.data_spc/factor
686 z = numpy.where(numpy.isfinite(z), z, numpy.NAN)
686 z = numpy.where(numpy.isfinite(z), z, numpy.NAN)
687 avg = numpy.average(z, axis=1)
687 avg = numpy.average(z, axis=1)
688
688
689 return 10*numpy.log10(avg)
689 return 10*numpy.log10(avg)
690
690
691 def getCoherence(self, pairsList=None, phase=False):
691 def getCoherence(self, pairsList=None, phase=False):
692
692
693 z = []
693 z = []
694 if pairsList is None:
694 if pairsList is None:
695 pairsIndexList = self.pairsIndexList
695 pairsIndexList = self.pairsIndexList
696 else:
696 else:
697 pairsIndexList = []
697 pairsIndexList = []
698 for pair in pairsList:
698 for pair in pairsList:
699 if pair not in self.pairsList:
699 if pair not in self.pairsList:
700 raise ValueError, "Pair %s is not in dataOut.pairsList" %(pair)
700 raise ValueError, "Pair %s is not in dataOut.pairsList" %(pair)
701 pairsIndexList.append(self.pairsList.index(pair))
701 pairsIndexList.append(self.pairsList.index(pair))
702 for i in range(len(pairsIndexList)):
702 for i in range(len(pairsIndexList)):
703 pair = self.pairsList[pairsIndexList[i]]
703 pair = self.pairsList[pairsIndexList[i]]
704 ccf = numpy.average(self.data_cspc[pairsIndexList[i], :, :], axis=0)
704 ccf = numpy.average(self.data_cspc[pairsIndexList[i], :, :], axis=0)
705 powa = numpy.average(self.data_spc[pair[0], :, :], axis=0)
705 powa = numpy.average(self.data_spc[pair[0], :, :], axis=0)
706 powb = numpy.average(self.data_spc[pair[1], :, :], axis=0)
706 powb = numpy.average(self.data_spc[pair[1], :, :], axis=0)
707 avgcoherenceComplex = ccf/numpy.sqrt(powa*powb)
707 avgcoherenceComplex = ccf/numpy.sqrt(powa*powb)
708 if phase:
708 if phase:
709 data = numpy.arctan2(avgcoherenceComplex.imag,
709 data = numpy.arctan2(avgcoherenceComplex.imag,
710 avgcoherenceComplex.real)*180/numpy.pi
710 avgcoherenceComplex.real)*180/numpy.pi
711 else:
711 else:
712 data = numpy.abs(avgcoherenceComplex)
712 data = numpy.abs(avgcoherenceComplex)
713
713
714 z.append(data)
714 z.append(data)
715
715
716 return numpy.array(z)
716 return numpy.array(z)
717
717
718 def setValue(self, value):
718 def setValue(self, value):
719
719
720 print "This property should not be initialized"
720 print "This property should not be initialized"
721
721
722 return
722 return
723
723
724 nPairs = property(getNPairs, setValue, "I'm the 'nPairs' property.")
724 nPairs = property(getNPairs, setValue, "I'm the 'nPairs' property.")
725 pairsIndexList = property(getPairsIndexList, setValue, "I'm the 'pairsIndexList' property.")
725 pairsIndexList = property(getPairsIndexList, setValue, "I'm the 'pairsIndexList' property.")
726 normFactor = property(getNormFactor, setValue, "I'm the 'getNormFactor' property.")
726 normFactor = property(getNormFactor, setValue, "I'm the 'getNormFactor' property.")
727 flag_cspc = property(getFlagCspc, setValue)
727 flag_cspc = property(getFlagCspc, setValue)
728 flag_dc = property(getFlagDc, setValue)
728 flag_dc = property(getFlagDc, setValue)
729 noise = property(getNoise, setValue, "I'm the 'nHeights' property.")
729 noise = property(getNoise, setValue, "I'm the 'nHeights' property.")
730 timeInterval = property(getTimeInterval, setValue, "I'm the 'timeInterval' property")
730 timeInterval = property(getTimeInterval, setValue, "I'm the 'timeInterval' property")
731
731
732 class SpectraHeis(Spectra):
732 class SpectraHeis(Spectra):
733
733
734 data_spc = None
734 data_spc = None
735
735
736 data_cspc = None
736 data_cspc = None
737
737
738 data_dc = None
738 data_dc = None
739
739
740 nFFTPoints = None
740 nFFTPoints = None
741
741
742 # nPairs = None
742 # nPairs = None
743
743
744 pairsList = None
744 pairsList = None
745
745
746 nCohInt = None
746 nCohInt = None
747
747
748 nIncohInt = None
748 nIncohInt = None
749
749
750 def __init__(self):
750 def __init__(self):
751
751
752 self.radarControllerHeaderObj = RadarControllerHeader()
752 self.radarControllerHeaderObj = RadarControllerHeader()
753
753
754 self.systemHeaderObj = SystemHeader()
754 self.systemHeaderObj = SystemHeader()
755
755
756 self.type = "SpectraHeis"
756 self.type = "SpectraHeis"
757
757
758 # self.dtype = None
758 # self.dtype = None
759
759
760 # self.nChannels = 0
760 # self.nChannels = 0
761
761
762 # self.nHeights = 0
762 # self.nHeights = 0
763
763
764 self.nProfiles = None
764 self.nProfiles = None
765
765
766 self.heightList = None
766 self.heightList = None
767
767
768 self.channelList = None
768 self.channelList = None
769
769
770 # self.channelIndexList = None
770 # self.channelIndexList = None
771
771
772 self.flagNoData = True
772 self.flagNoData = True
773
773
774 self.flagDiscontinuousBlock = False
774 self.flagDiscontinuousBlock = False
775
775
776 # self.nPairs = 0
776 # self.nPairs = 0
777
777
778 self.utctime = None
778 self.utctime = None
779
779
780 self.blocksize = None
780 self.blocksize = None
781
781
782 self.profileIndex = 0
782 self.profileIndex = 0
783
783
784 self.nCohInt = 1
784 self.nCohInt = 1
785
785
786 self.nIncohInt = 1
786 self.nIncohInt = 1
787
787
788 def getNormFactor(self):
788 def getNormFactor(self):
789 pwcode = 1
789 pwcode = 1
790 if self.flagDecodeData:
790 if self.flagDecodeData:
791 pwcode = numpy.sum(self.code[0]**2)
791 pwcode = numpy.sum(self.code[0]**2)
792
792
793 normFactor = self.nIncohInt*self.nCohInt*pwcode
793 normFactor = self.nIncohInt*self.nCohInt*pwcode
794
794
795 return normFactor
795 return normFactor
796
796
797 def getTimeInterval(self):
797 def getTimeInterval(self):
798
798
799 timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt
799 timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt
800
800
801 return timeInterval
801 return timeInterval
802
802
803 normFactor = property(getNormFactor, "I'm the 'getNormFactor' property.")
803 normFactor = property(getNormFactor, "I'm the 'getNormFactor' property.")
804 timeInterval = property(getTimeInterval, "I'm the 'timeInterval' property")
804 timeInterval = property(getTimeInterval, "I'm the 'timeInterval' property")
805
805
806 class Fits(JROData):
806 class Fits(JROData):
807
807
808 heightList = None
808 heightList = None
809
809
810 channelList = None
810 channelList = None
811
811
812 flagNoData = True
812 flagNoData = True
813
813
814 flagDiscontinuousBlock = False
814 flagDiscontinuousBlock = False
815
815
816 useLocalTime = False
816 useLocalTime = False
817
817
818 utctime = None
818 utctime = None
819
819
820 timeZone = None
820 timeZone = None
821
821
822 # ippSeconds = None
822 # ippSeconds = None
823
823
824 # timeInterval = None
824 # timeInterval = None
825
825
826 nCohInt = None
826 nCohInt = None
827
827
828 nIncohInt = None
828 nIncohInt = None
829
829
830 noise = None
830 noise = None
831
831
832 windowOfFilter = 1
832 windowOfFilter = 1
833
833
834 #Speed of ligth
834 #Speed of ligth
835 C = 3e8
835 C = 3e8
836
836
837 frequency = 49.92e6
837 frequency = 49.92e6
838
838
839 realtime = False
839 realtime = False
840
840
841
841
842 def __init__(self):
842 def __init__(self):
843
843
844 self.type = "Fits"
844 self.type = "Fits"
845
845
846 self.nProfiles = None
846 self.nProfiles = None
847
847
848 self.heightList = None
848 self.heightList = None
849
849
850 self.channelList = None
850 self.channelList = None
851
851
852 # self.channelIndexList = None
852 # self.channelIndexList = None
853
853
854 self.flagNoData = True
854 self.flagNoData = True
855
855
856 self.utctime = None
856 self.utctime = None
857
857
858 self.nCohInt = 1
858 self.nCohInt = 1
859
859
860 self.nIncohInt = 1
860 self.nIncohInt = 1
861
861
862 self.useLocalTime = True
862 self.useLocalTime = True
863
863
864 self.profileIndex = 0
864 self.profileIndex = 0
865
865
866 # self.utctime = None
866 # self.utctime = None
867 # self.timeZone = None
867 # self.timeZone = None
868 # self.ltctime = None
868 # self.ltctime = None
869 # self.timeInterval = None
869 # self.timeInterval = None
870 # self.header = None
870 # self.header = None
871 # self.data_header = None
871 # self.data_header = None
872 # self.data = None
872 # self.data = None
873 # self.datatime = None
873 # self.datatime = None
874 # self.flagNoData = False
874 # self.flagNoData = False
875 # self.expName = ''
875 # self.expName = ''
876 # self.nChannels = None
876 # self.nChannels = None
877 # self.nSamples = None
877 # self.nSamples = None
878 # self.dataBlocksPerFile = None
878 # self.dataBlocksPerFile = None
879 # self.comments = ''
879 # self.comments = ''
880 #
880 #
881
881
882
882
883 def getltctime(self):
883 def getltctime(self):
884
884
885 if self.useLocalTime:
885 if self.useLocalTime:
886 return self.utctime - self.timeZone*60
886 return self.utctime - self.timeZone*60
887
887
888 return self.utctime
888 return self.utctime
889
889
890 def getDatatime(self):
890 def getDatatime(self):
891
891
892 datatime = datetime.datetime.utcfromtimestamp(self.ltctime)
892 datatime = datetime.datetime.utcfromtimestamp(self.ltctime)
893 return datatime
893 return datatime
894
894
895 def getTimeRange(self):
895 def getTimeRange(self):
896
896
897 datatime = []
897 datatime = []
898
898
899 datatime.append(self.ltctime)
899 datatime.append(self.ltctime)
900 datatime.append(self.ltctime + self.timeInterval)
900 datatime.append(self.ltctime + self.timeInterval)
901
901
902 datatime = numpy.array(datatime)
902 datatime = numpy.array(datatime)
903
903
904 return datatime
904 return datatime
905
905
906 def getHeiRange(self):
906 def getHeiRange(self):
907
907
908 heis = self.heightList
908 heis = self.heightList
909
909
910 return heis
910 return heis
911
911
912 def getNHeights(self):
912 def getNHeights(self):
913
913
914 return len(self.heightList)
914 return len(self.heightList)
915
915
916 def getNChannels(self):
916 def getNChannels(self):
917
917
918 return len(self.channelList)
918 return len(self.channelList)
919
919
920 def getChannelIndexList(self):
920 def getChannelIndexList(self):
921
921
922 return range(self.nChannels)
922 return range(self.nChannels)
923
923
924 def getNoise(self, type = 1):
924 def getNoise(self, type = 1):
925
925
926 #noise = numpy.zeros(self.nChannels)
926 #noise = numpy.zeros(self.nChannels)
927
927
928 if type == 1:
928 if type == 1:
929 noise = self.getNoisebyHildebrand()
929 noise = self.getNoisebyHildebrand()
930
930
931 if type == 2:
931 if type == 2:
932 noise = self.getNoisebySort()
932 noise = self.getNoisebySort()
933
933
934 if type == 3:
934 if type == 3:
935 noise = self.getNoisebyWindow()
935 noise = self.getNoisebyWindow()
936
936
937 return noise
937 return noise
938
938
939 def getTimeInterval(self):
939 def getTimeInterval(self):
940
940
941 timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt
941 timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt
942
942
943 return timeInterval
943 return timeInterval
944
944
945 datatime = property(getDatatime, "I'm the 'datatime' property")
945 datatime = property(getDatatime, "I'm the 'datatime' property")
946 nHeights = property(getNHeights, "I'm the 'nHeights' property.")
946 nHeights = property(getNHeights, "I'm the 'nHeights' property.")
947 nChannels = property(getNChannels, "I'm the 'nChannel' property.")
947 nChannels = property(getNChannels, "I'm the 'nChannel' property.")
948 channelIndexList = property(getChannelIndexList, "I'm the 'channelIndexList' property.")
948 channelIndexList = property(getChannelIndexList, "I'm the 'channelIndexList' property.")
949 noise = property(getNoise, "I'm the 'nHeights' property.")
949 noise = property(getNoise, "I'm the 'nHeights' property.")
950
950
951 ltctime = property(getltctime, "I'm the 'ltctime' property")
951 ltctime = property(getltctime, "I'm the 'ltctime' property")
952 timeInterval = property(getTimeInterval, "I'm the 'timeInterval' property")
952 timeInterval = property(getTimeInterval, "I'm the 'timeInterval' property")
953
953
954
954
955 class Correlation(JROData):
955 class Correlation(JROData):
956
956
957 noise = None
957 noise = None
958
958
959 SNR = None
959 SNR = None
960
960
961 #--------------------------------------------------
961 #--------------------------------------------------
962
962
963 mode = None
963 mode = None
964
964
965 split = False
965 split = False
966
966
967 data_cf = None
967 data_cf = None
968
968
969 lags = None
969 lags = None
970
970
971 lagRange = None
971 lagRange = None
972
972
973 pairsList = None
973 pairsList = None
974
974
975 normFactor = None
975 normFactor = None
976
976
977 #--------------------------------------------------
977 #--------------------------------------------------
978
978
979 # calculateVelocity = None
979 # calculateVelocity = None
980
980
981 nLags = None
981 nLags = None
982
982
983 nPairs = None
983 nPairs = None
984
984
985 nAvg = None
985 nAvg = None
986
986
987
987
988 def __init__(self):
988 def __init__(self):
989 '''
989 '''
990 Constructor
990 Constructor
991 '''
991 '''
992 self.radarControllerHeaderObj = RadarControllerHeader()
992 self.radarControllerHeaderObj = RadarControllerHeader()
993
993
994 self.systemHeaderObj = SystemHeader()
994 self.systemHeaderObj = SystemHeader()
995
995
996 self.type = "Correlation"
996 self.type = "Correlation"
997
997
998 self.data = None
998 self.data = None
999
999
1000 self.dtype = None
1000 self.dtype = None
1001
1001
1002 self.nProfiles = None
1002 self.nProfiles = None
1003
1003
1004 self.heightList = None
1004 self.heightList = None
1005
1005
1006 self.channelList = None
1006 self.channelList = None
1007
1007
1008 self.flagNoData = True
1008 self.flagNoData = True
1009
1009
1010 self.flagDiscontinuousBlock = False
1010 self.flagDiscontinuousBlock = False
1011
1011
1012 self.utctime = None
1012 self.utctime = None
1013
1013
1014 self.timeZone = None
1014 self.timeZone = None
1015
1015
1016 self.dstFlag = None
1016 self.dstFlag = None
1017
1017
1018 self.errorCount = None
1018 self.errorCount = None
1019
1019
1020 self.blocksize = None
1020 self.blocksize = None
1021
1021
1022 self.flagDecodeData = False #asumo q la data no esta decodificada
1022 self.flagDecodeData = False #asumo q la data no esta decodificada
1023
1023
1024 self.flagDeflipData = False #asumo q la data no esta sin flip
1024 self.flagDeflipData = False #asumo q la data no esta sin flip
1025
1025
1026 self.pairsList = None
1026 self.pairsList = None
1027
1027
1028 self.nPoints = None
1028 self.nPoints = None
1029
1029
1030 def getPairsList(self):
1030 def getPairsList(self):
1031
1031
1032 return self.pairsList
1032 return self.pairsList
1033
1033
1034 def getNoise(self, mode = 2):
1034 def getNoise(self, mode = 2):
1035
1035
1036 indR = numpy.where(self.lagR == 0)[0][0]
1036 indR = numpy.where(self.lagR == 0)[0][0]
1037 indT = numpy.where(self.lagT == 0)[0][0]
1037 indT = numpy.where(self.lagT == 0)[0][0]
1038
1038
1039 jspectra0 = self.data_corr[:,:,indR,:]
1039 jspectra0 = self.data_corr[:,:,indR,:]
1040 jspectra = copy.copy(jspectra0)
1040 jspectra = copy.copy(jspectra0)
1041
1041
1042 num_chan = jspectra.shape[0]
1042 num_chan = jspectra.shape[0]
1043 num_hei = jspectra.shape[2]
1043 num_hei = jspectra.shape[2]
1044
1044
1045 freq_dc = jspectra.shape[1]/2
1045 freq_dc = jspectra.shape[1]/2
1046 ind_vel = numpy.array([-2,-1,1,2]) + freq_dc
1046 ind_vel = numpy.array([-2,-1,1,2]) + freq_dc
1047
1047
1048 if ind_vel[0]<0:
1048 if ind_vel[0]<0:
1049 ind_vel[range(0,1)] = ind_vel[range(0,1)] + self.num_prof
1049 ind_vel[range(0,1)] = ind_vel[range(0,1)] + self.num_prof
1050
1050
1051 if mode == 1:
1051 if mode == 1:
1052 jspectra[:,freq_dc,:] = (jspectra[:,ind_vel[1],:] + jspectra[:,ind_vel[2],:])/2 #CORRECCION
1052 jspectra[:,freq_dc,:] = (jspectra[:,ind_vel[1],:] + jspectra[:,ind_vel[2],:])/2 #CORRECCION
1053
1053
1054 if mode == 2:
1054 if mode == 2:
1055
1055
1056 vel = numpy.array([-2,-1,1,2])
1056 vel = numpy.array([-2,-1,1,2])
1057 xx = numpy.zeros([4,4])
1057 xx = numpy.zeros([4,4])
1058
1058
1059 for fil in range(4):
1059 for fil in range(4):
1060 xx[fil,:] = vel[fil]**numpy.asarray(range(4))
1060 xx[fil,:] = vel[fil]**numpy.asarray(range(4))
1061
1061
1062 xx_inv = numpy.linalg.inv(xx)
1062 xx_inv = numpy.linalg.inv(xx)
1063 xx_aux = xx_inv[0,:]
1063 xx_aux = xx_inv[0,:]
1064
1064
1065 for ich in range(num_chan):
1065 for ich in range(num_chan):
1066 yy = jspectra[ich,ind_vel,:]
1066 yy = jspectra[ich,ind_vel,:]
1067 jspectra[ich,freq_dc,:] = numpy.dot(xx_aux,yy)
1067 jspectra[ich,freq_dc,:] = numpy.dot(xx_aux,yy)
1068
1068
1069 junkid = jspectra[ich,freq_dc,:]<=0
1069 junkid = jspectra[ich,freq_dc,:]<=0
1070 cjunkid = sum(junkid)
1070 cjunkid = sum(junkid)
1071
1071
1072 if cjunkid.any():
1072 if cjunkid.any():
1073 jspectra[ich,freq_dc,junkid.nonzero()] = (jspectra[ich,ind_vel[1],junkid] + jspectra[ich,ind_vel[2],junkid])/2
1073 jspectra[ich,freq_dc,junkid.nonzero()] = (jspectra[ich,ind_vel[1],junkid] + jspectra[ich,ind_vel[2],junkid])/2
1074
1074
1075 noise = jspectra0[:,freq_dc,:] - jspectra[:,freq_dc,:]
1075 noise = jspectra0[:,freq_dc,:] - jspectra[:,freq_dc,:]
1076
1076
1077 return noise
1077 return noise
1078
1078
1079 def getTimeInterval(self):
1079 def getTimeInterval(self):
1080
1080
1081 timeInterval = self.ippSeconds * self.nCohInt * self.nProfiles
1081 timeInterval = self.ippSeconds * self.nCohInt * self.nProfiles
1082
1082
1083 return timeInterval
1083 return timeInterval
1084
1084
1085 def splitFunctions(self):
1085 def splitFunctions(self):
1086
1086
1087 pairsList = self.pairsList
1087 pairsList = self.pairsList
1088 ccf_pairs = []
1088 ccf_pairs = []
1089 acf_pairs = []
1089 acf_pairs = []
1090 ccf_ind = []
1090 ccf_ind = []
1091 acf_ind = []
1091 acf_ind = []
1092 for l in range(len(pairsList)):
1092 for l in range(len(pairsList)):
1093 chan0 = pairsList[l][0]
1093 chan0 = pairsList[l][0]
1094 chan1 = pairsList[l][1]
1094 chan1 = pairsList[l][1]
1095
1095
1096 #Obteniendo pares de Autocorrelacion
1096 #Obteniendo pares de Autocorrelacion
1097 if chan0 == chan1:
1097 if chan0 == chan1:
1098 acf_pairs.append(chan0)
1098 acf_pairs.append(chan0)
1099 acf_ind.append(l)
1099 acf_ind.append(l)
1100 else:
1100 else:
1101 ccf_pairs.append(pairsList[l])
1101 ccf_pairs.append(pairsList[l])
1102 ccf_ind.append(l)
1102 ccf_ind.append(l)
1103
1103
1104 data_acf = self.data_cf[acf_ind]
1104 data_acf = self.data_cf[acf_ind]
1105 data_ccf = self.data_cf[ccf_ind]
1105 data_ccf = self.data_cf[ccf_ind]
1106
1106
1107 return acf_ind, ccf_ind, acf_pairs, ccf_pairs, data_acf, data_ccf
1107 return acf_ind, ccf_ind, acf_pairs, ccf_pairs, data_acf, data_ccf
1108
1108
1109 def getNormFactor(self):
1109 def getNormFactor(self):
1110 acf_ind, ccf_ind, acf_pairs, ccf_pairs, data_acf, data_ccf = self.splitFunctions()
1110 acf_ind, ccf_ind, acf_pairs, ccf_pairs, data_acf, data_ccf = self.splitFunctions()
1111 acf_pairs = numpy.array(acf_pairs)
1111 acf_pairs = numpy.array(acf_pairs)
1112 normFactor = numpy.zeros((self.nPairs,self.nHeights))
1112 normFactor = numpy.zeros((self.nPairs,self.nHeights))
1113
1113
1114 for p in range(self.nPairs):
1114 for p in range(self.nPairs):
1115 pair = self.pairsList[p]
1115 pair = self.pairsList[p]
1116
1116
1117 ch0 = pair[0]
1117 ch0 = pair[0]
1118 ch1 = pair[1]
1118 ch1 = pair[1]
1119
1119
1120 ch0_max = numpy.max(data_acf[acf_pairs==ch0,:,:], axis=1)
1120 ch0_max = numpy.max(data_acf[acf_pairs==ch0,:,:], axis=1)
1121 ch1_max = numpy.max(data_acf[acf_pairs==ch1,:,:], axis=1)
1121 ch1_max = numpy.max(data_acf[acf_pairs==ch1,:,:], axis=1)
1122 normFactor[p,:] = numpy.sqrt(ch0_max*ch1_max)
1122 normFactor[p,:] = numpy.sqrt(ch0_max*ch1_max)
1123
1123
1124 return normFactor
1124 return normFactor
1125
1125
1126 timeInterval = property(getTimeInterval, "I'm the 'timeInterval' property")
1126 timeInterval = property(getTimeInterval, "I'm the 'timeInterval' property")
1127 normFactor = property(getNormFactor, "I'm the 'normFactor property'")
1127 normFactor = property(getNormFactor, "I'm the 'normFactor property'")
1128
1128
1129 class Parameters(Spectra):
1129 class Parameters(Spectra):
1130
1130
1131 experimentInfo = None #Information about the experiment
1131 experimentInfo = None #Information about the experiment
1132
1132
1133 #Information from previous data
1133 #Information from previous data
1134
1134
1135 inputUnit = None #Type of data to be processed
1135 inputUnit = None #Type of data to be processed
1136
1136
1137 operation = None #Type of operation to parametrize
1137 operation = None #Type of operation to parametrize
1138
1138
1139 #normFactor = None #Normalization Factor
1139 #normFactor = None #Normalization Factor
1140
1140
1141 groupList = None #List of Pairs, Groups, etc
1141 groupList = None #List of Pairs, Groups, etc
1142
1142
1143 #Parameters
1143 #Parameters
1144
1144
1145 data_param = None #Parameters obtained
1145 data_param = None #Parameters obtained
1146
1146
1147 data_pre = None #Data Pre Parametrization
1147 data_pre = None #Data Pre Parametrization
1148
1148
1149 data_SNR = None #Signal to Noise Ratio
1149 data_SNR = None #Signal to Noise Ratio
1150
1150
1151 # heightRange = None #Heights
1151 # heightRange = None #Heights
1152
1152
1153 abscissaList = None #Abscissa, can be velocities, lags or time
1153 abscissaList = None #Abscissa, can be velocities, lags or time
1154
1154
1155 # noise = None #Noise Potency
1155 # noise = None #Noise Potency
1156
1156
1157 utctimeInit = None #Initial UTC time
1157 utctimeInit = None #Initial UTC time
1158
1158
1159 paramInterval = None #Time interval to calculate Parameters in seconds
1159 paramInterval = None #Time interval to calculate Parameters in seconds
1160
1160
1161 useLocalTime = True
1161 useLocalTime = True
1162
1162
1163 #Fitting
1163 #Fitting
1164
1164
1165 data_error = None #Error of the estimation
1165 data_error = None #Error of the estimation
1166
1166
1167 constants = None
1167 constants = None
1168
1168
1169 library = None
1169 library = None
1170
1170
1171 #Output signal
1171 #Output signal
1172
1172
1173 outputInterval = None #Time interval to calculate output signal in seconds
1173 outputInterval = None #Time interval to calculate output signal in seconds
1174
1174
1175 data_output = None #Out signal
1175 data_output = None #Out signal
1176
1176
1177 nAvg = None
1177 nAvg = None
1178
1178
1179 noise_estimation = None
1179 noise_estimation = None
1180
1180
1181
1181
1182 def __init__(self):
1182 def __init__(self):
1183 '''
1183 '''
1184 Constructor
1184 Constructor
1185 '''
1185 '''
1186 self.radarControllerHeaderObj = RadarControllerHeader()
1186 self.radarControllerHeaderObj = RadarControllerHeader()
1187
1187
1188 self.systemHeaderObj = SystemHeader()
1188 self.systemHeaderObj = SystemHeader()
1189
1189
1190 self.type = "Parameters"
1190 self.type = "Parameters"
1191
1191
1192 def getTimeRange1(self, interval):
1192 def getTimeRange1(self, interval):
1193
1193
1194 datatime = []
1194 datatime = []
1195
1195
1196 if self.useLocalTime:
1196 if self.useLocalTime:
1197 time1 = self.utctimeInit - self.timeZone*60
1197 time1 = self.utctimeInit - self.timeZone*60
1198 else:
1198 else:
1199 time1 = self.utctimeInit
1199 time1 = self.utctimeInit
1200
1200
1201 datatime.append(time1)
1201 datatime.append(time1)
1202 datatime.append(time1 + interval)
1202 datatime.append(time1 + interval)
1203 datatime = numpy.array(datatime)
1203 datatime = numpy.array(datatime)
1204
1204
1205 return datatime
1205 return datatime
1206
1206
1207 def getTimeInterval(self):
1207 def getTimeInterval(self):
1208
1208
1209 if hasattr(self, 'timeInterval1'):
1209 if hasattr(self, 'timeInterval1'):
1210 return self.timeInterval1
1210 return self.timeInterval1
1211 else:
1211 else:
1212 return self.paramInterval
1212 return self.paramInterval
1213
1213
1214 def getNoise(self):
1214 def getNoise(self):
1215
1215
1216 return self.spc_noise
1216 return self.spc_noise
1217
1217
1218 timeInterval = property(getTimeInterval)
1218 timeInterval = property(getTimeInterval)
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@@ -1,964 +1,782
1
1
2 import os
2 import os
3 import zmq
4 import time
3 import time
5 import numpy
4 import glob
6 import datetime
5 import datetime
7 import numpy as np
6 from multiprocessing import Process
7
8 import zmq
9 import numpy
8 import matplotlib
10 import matplotlib
9 import glob
10 matplotlib.use('TkAgg')
11 import matplotlib.pyplot as plt
11 import matplotlib.pyplot as plt
12 from mpl_toolkits.axes_grid1 import make_axes_locatable
12 from mpl_toolkits.axes_grid1 import make_axes_locatable
13 from matplotlib.ticker import FuncFormatter, LinearLocator
13 from matplotlib.ticker import FuncFormatter, LinearLocator, MultipleLocator
14 from multiprocessing import Process
15
14
16 from schainpy.model.proc.jroproc_base import Operation
15 from schainpy.model.proc.jroproc_base import Operation
17
16 from schainpy.utils import log
18 plt.ion()
19
17
20 func = lambda x, pos: ('%s') %(datetime.datetime.fromtimestamp(x).strftime('%H:%M'))
18 func = lambda x, pos: ('%s') %(datetime.datetime.fromtimestamp(x).strftime('%H:%M'))
21 fromtimestamp = lambda x, mintime : (datetime.datetime.utcfromtimestamp(mintime).replace(hour=(x + 5), minute=0) - d1970).total_seconds()
22
19
20 d1970 = datetime.datetime(1970, 1, 1)
23
21
24 d1970 = datetime.datetime(1970,1,1)
25
22
26 class PlotData(Operation, Process):
23 class PlotData(Operation, Process):
24 '''
25 Base class for Schain plotting operations
26 '''
27
27
28 CODE = 'Figure'
28 CODE = 'Figure'
29 colormap = 'jro'
29 colormap = 'jro'
30 bgcolor = 'white'
30 CONFLATE = False
31 CONFLATE = False
31 __MAXNUMX = 80
32 __MAXNUMX = 80
32 __missing = 1E30
33 __missing = 1E30
33
34
34 def __init__(self, **kwargs):
35 def __init__(self, **kwargs):
35
36
36 Operation.__init__(self, plot=True, **kwargs)
37 Operation.__init__(self, plot=True, **kwargs)
37 Process.__init__(self)
38 Process.__init__(self)
38 self.kwargs['code'] = self.CODE
39 self.kwargs['code'] = self.CODE
39 self.mp = False
40 self.mp = False
40 self.dataOut = None
41 self.data = None
41 self.isConfig = False
42 self.isConfig = False
42 self.figure = None
43 self.figures = []
43 self.axes = []
44 self.axes = []
45 self.cb_axes = []
44 self.localtime = kwargs.pop('localtime', True)
46 self.localtime = kwargs.pop('localtime', True)
45 self.show = kwargs.get('show', True)
47 self.show = kwargs.get('show', True)
46 self.save = kwargs.get('save', False)
48 self.save = kwargs.get('save', False)
47 self.colormap = kwargs.get('colormap', self.colormap)
49 self.colormap = kwargs.get('colormap', self.colormap)
48 self.colormap_coh = kwargs.get('colormap_coh', 'jet')
50 self.colormap_coh = kwargs.get('colormap_coh', 'jet')
49 self.colormap_phase = kwargs.get('colormap_phase', 'RdBu_r')
51 self.colormap_phase = kwargs.get('colormap_phase', 'RdBu_r')
50 self.showprofile = kwargs.get('showprofile', True)
52 self.colormaps = kwargs.get('colormaps', None)
51 self.title = kwargs.get('wintitle', '')
53 self.bgcolor = kwargs.get('bgcolor', self.bgcolor)
54 self.showprofile = kwargs.get('showprofile', False)
55 self.title = kwargs.get('wintitle', self.CODE.upper())
56 self.cb_label = kwargs.get('cb_label', None)
57 self.cb_labels = kwargs.get('cb_labels', None)
52 self.xaxis = kwargs.get('xaxis', 'frequency')
58 self.xaxis = kwargs.get('xaxis', 'frequency')
53 self.zmin = kwargs.get('zmin', None)
59 self.zmin = kwargs.get('zmin', None)
54 self.zmax = kwargs.get('zmax', None)
60 self.zmax = kwargs.get('zmax', None)
61 self.zlimits = kwargs.get('zlimits', None)
55 self.xmin = kwargs.get('xmin', None)
62 self.xmin = kwargs.get('xmin', None)
63 if self.xmin is not None:
64 self.xmin += 5
56 self.xmax = kwargs.get('xmax', None)
65 self.xmax = kwargs.get('xmax', None)
57 self.xrange = kwargs.get('xrange', 24)
66 self.xrange = kwargs.get('xrange', 24)
58 self.ymin = kwargs.get('ymin', None)
67 self.ymin = kwargs.get('ymin', None)
59 self.ymax = kwargs.get('ymax', None)
68 self.ymax = kwargs.get('ymax', None)
60 self.__MAXNUMY = kwargs.get('decimation', 5000)
69 self.xlabel = kwargs.get('xlabel', None)
61 self.throttle_value = 5
70 self.__MAXNUMY = kwargs.get('decimation', 100)
62 self.times = []
71 self.showSNR = kwargs.get('showSNR', False)
63 #self.interactive = self.kwargs['parent']
72 self.oneFigure = kwargs.get('oneFigure', True)
73 self.width = kwargs.get('width', None)
74 self.height = kwargs.get('height', None)
75 self.colorbar = kwargs.get('colorbar', True)
76 self.factors = kwargs.get('factors', [1, 1, 1, 1, 1, 1, 1, 1])
77 self.titles = ['' for __ in range(16)]
78
79 def __setup(self):
80 '''
81 Common setup for all figures, here figures and axes are created
82 '''
83
84 self.setup()
85
86 if self.width is None:
87 self.width = 8
64
88
89 self.figures = []
90 self.axes = []
91 self.cb_axes = []
92 self.pf_axes = []
93 self.cmaps = []
94
95 size = '15%' if self.ncols==1 else '30%'
96 pad = '4%' if self.ncols==1 else '8%'
97
98 if self.oneFigure:
99 if self.height is None:
100 self.height = 1.4*self.nrows + 1
101 fig = plt.figure(figsize=(self.width, self.height),
102 edgecolor='k',
103 facecolor='w')
104 self.figures.append(fig)
105 for n in range(self.nplots):
106 ax = fig.add_subplot(self.nrows, self.ncols, n+1)
107 ax.tick_params(labelsize=8)
108 ax.firsttime = True
109 self.axes.append(ax)
110 if self.showprofile:
111 cax = self.__add_axes(ax, size=size, pad=pad)
112 cax.tick_params(labelsize=8)
113 self.pf_axes.append(cax)
114 else:
115 if self.height is None:
116 self.height = 3
117 for n in range(self.nplots):
118 fig = plt.figure(figsize=(self.width, self.height),
119 edgecolor='k',
120 facecolor='w')
121 ax = fig.add_subplot(1, 1, 1)
122 ax.tick_params(labelsize=8)
123 ax.firsttime = True
124 self.figures.append(fig)
125 self.axes.append(ax)
126 if self.showprofile:
127 cax = self.__add_axes(ax, size=size, pad=pad)
128 cax.tick_params(labelsize=8)
129 self.pf_axes.append(cax)
130
131 for n in range(self.nrows):
132 if self.colormaps is not None:
133 cmap = plt.get_cmap(self.colormaps[n])
134 else:
135 cmap = plt.get_cmap(self.colormap)
136 cmap.set_bad(self.bgcolor, 1.)
137 self.cmaps.append(cmap)
138
139 def __add_axes(self, ax, size='30%', pad='8%'):
65 '''
140 '''
66 this new parameter is created to plot data from varius channels at different figures
141 Add new axes to the given figure
67 1. crear una lista de figuras donde se puedan plotear las figuras,
68 2. dar las opciones de configuracion a cada figura, estas opciones son iguales para ambas figuras
69 3. probar?
70 '''
142 '''
71 self.ind_plt_ch = kwargs.get('ind_plt_ch', False)
143 divider = make_axes_locatable(ax)
72 self.figurelist = None
144 nax = divider.new_horizontal(size=size, pad=pad)
145 ax.figure.add_axes(nax)
146 return nax
73
147
74
148
75 def fill_gaps(self, x_buffer, y_buffer, z_buffer):
149 def setup(self):
150 '''
151 This method should be implemented in the child class, the following
152 attributes should be set:
153
154 self.nrows: number of rows
155 self.ncols: number of cols
156 self.nplots: number of plots (channels or pairs)
157 self.ylabel: label for Y axes
158 self.titles: list of axes title
159
160 '''
161 raise(NotImplementedError, 'Implement this method in child class')
76
162
163 def fill_gaps(self, x_buffer, y_buffer, z_buffer):
164 '''
165 Create a masked array for missing data
166 '''
77 if x_buffer.shape[0] < 2:
167 if x_buffer.shape[0] < 2:
78 return x_buffer, y_buffer, z_buffer
168 return x_buffer, y_buffer, z_buffer
79
169
80 deltas = x_buffer[1:] - x_buffer[0:-1]
170 deltas = x_buffer[1:] - x_buffer[0:-1]
81 x_median = np.median(deltas)
171 x_median = numpy.median(deltas)
82
172
83 index = np.where(deltas > 5*x_median)
173 index = numpy.where(deltas > 5*x_median)
84
174
85 if len(index[0]) != 0:
175 if len(index[0]) != 0:
86 z_buffer[::, index[0], ::] = self.__missing
176 z_buffer[::, index[0], ::] = self.__missing
87 z_buffer = np.ma.masked_inside(z_buffer,
177 z_buffer = numpy.ma.masked_inside(z_buffer,
88 0.99*self.__missing,
178 0.99*self.__missing,
89 1.01*self.__missing)
179 1.01*self.__missing)
90
180
91 return x_buffer, y_buffer, z_buffer
181 return x_buffer, y_buffer, z_buffer
92
182
93 def decimate(self):
183 def decimate(self):
94
184
95 # dx = int(len(self.x)/self.__MAXNUMX) + 1
185 # dx = int(len(self.x)/self.__MAXNUMX) + 1
96 dy = int(len(self.y)/self.__MAXNUMY) + 1
186 dy = int(len(self.y)/self.__MAXNUMY) + 1
97
187
98 # x = self.x[::dx]
188 # x = self.x[::dx]
99 x = self.x
189 x = self.x
100 y = self.y[::dy]
190 y = self.y[::dy]
101 z = self.z[::, ::, ::dy]
191 z = self.z[::, ::, ::dy]
102
192
103 return x, y, z
193 return x, y, z
104
194
105 '''
195 def format(self):
106 JM:
196 '''
107 elimana las otras imagenes generadas debido a que lso workers no llegan en orden y le pueden
197 Set min and max values, labels, ticks and titles
108 poner otro tiempo a la figura q no necesariamente es el ultimo.
198 '''
109 Solo se realiza cuando termina la imagen.
110 Problemas:
111
199
112 File "/home/ci-81/workspace/schainv2.3/schainpy/model/graphics/jroplot_data.py", line 145, in __plot
200 if self.xmin is None:
113 for n, eachfigure in enumerate(self.figurelist):
201 xmin = self.min_time
114 TypeError: 'NoneType' object is not iterable
202 else:
203 if self.xaxis is 'time':
204 dt = datetime.datetime.fromtimestamp(self.min_time)
205 xmin = (datetime.datetime.combine(dt.date(),
206 datetime.time(int(self.xmin), 0, 0))-d1970).total_seconds()
207 else:
208 xmin = self.xmin
115
209
116 '''
210 if self.xmax is None:
117 def deleteanotherfiles(self):
211 xmax = xmin+self.xrange*60*60
118 figurenames=[]
212 else:
119 if self.figurelist != None:
213 if self.xaxis is 'time':
120 for n, eachfigure in enumerate(self.figurelist):
214 dt = datetime.datetime.fromtimestamp(self.min_time)
121 #add specific name for each channel in channelList
215 xmax = (datetime.datetime.combine(dt.date(),
122 ghostfigname = os.path.join(self.save, '{}_{}_{}'.format(self.titles[n].replace(' ',''),self.CODE,
216 datetime.time(int(self.xmax), 0, 0))-d1970).total_seconds()
123 datetime.datetime.fromtimestamp(self.saveTime).strftime('%y%m%d')))
217 else:
124 figname = os.path.join(self.save, '{}_{}_{}.png'.format(self.titles[n].replace(' ',''),self.CODE,
218 xmax = self.xmax
125 datetime.datetime.fromtimestamp(self.saveTime).strftime('%y%m%d_%H%M%S')))
219
126
220 ymin = self.ymin if self.ymin else numpy.nanmin(self.y)
127 for ghostfigure in glob.glob(ghostfigname+'*'): #ghostfigure will adopt all posible names of figures
221 ymax = self.ymax if self.ymax else numpy.nanmax(self.y)
128 if ghostfigure != figname:
222
129 os.remove(ghostfigure)
223 ystep = 200 if ymax>= 800 else 100 if ymax>=400 else 50 if ymax>=200 else 20
130 print 'Removing GhostFigures:' , figname
224
131 else :
225 for n, ax in enumerate(self.axes):
132 '''Erasing ghost images for just on******************'''
226 if ax.firsttime:
133 ghostfigname = os.path.join(self.save, '{}_{}'.format(self.CODE,datetime.datetime.fromtimestamp(self.saveTime).strftime('%y%m%d')))
227 ax.set_facecolor(self.bgcolor)
134 figname = os.path.join(self.save, '{}_{}.png'.format(self.CODE,datetime.datetime.fromtimestamp(self.saveTime).strftime('%y%m%d_%H%M%S')))
228 ax.yaxis.set_major_locator(MultipleLocator(ystep))
135 for ghostfigure in glob.glob(ghostfigname+'*'): #ghostfigure will adopt all posible names of figures
229 if self.xaxis is 'time':
136 if ghostfigure != figname:
230 ax.xaxis.set_major_formatter(FuncFormatter(func))
137 os.remove(ghostfigure)
231 ax.xaxis.set_major_locator(LinearLocator(9))
138 print 'Removing GhostFigures:' , figname
232 if self.xlabel is not None:
233 ax.set_xlabel(self.xlabel)
234 ax.set_ylabel(self.ylabel)
235 ax.firsttime = False
236 if self.showprofile:
237 self.pf_axes[n].set_ylim(ymin, ymax)
238 self.pf_axes[n].set_xlim(self.zmin, self.zmax)
239 self.pf_axes[n].set_xlabel('dB')
240 self.pf_axes[n].grid(b=True, axis='x')
241 [tick.set_visible(False) for tick in self.pf_axes[n].get_yticklabels()]
242 if self.colorbar:
243 cb = plt.colorbar(ax.plt, ax=ax, pad=0.02)
244 cb.ax.tick_params(labelsize=8)
245 if self.cb_label:
246 cb.set_label(self.cb_label, size=8)
247 elif self.cb_labels:
248 cb.set_label(self.cb_labels[n], size=8)
249
250 ax.set_title('{} - {} UTC'.format(
251 self.titles[n],
252 datetime.datetime.fromtimestamp(self.max_time).strftime('%H:%M:%S')),
253 size=8)
254 ax.set_xlim(xmin, xmax)
255 ax.set_ylim(ymin, ymax)
256
139
257
140 def __plot(self):
258 def __plot(self):
141
259 '''
142 print 'plotting...{}'.format(self.CODE)
260 '''
143 if self.ind_plt_ch is False : #standard
261 log.success('Plotting', self.name)
262
263 self.plot()
264 self.format()
265
266 for n, fig in enumerate(self.figures):
267 if self.nrows == 0 or self.nplots == 0:
268 log.warning('No data', self.name)
269 continue
144 if self.show:
270 if self.show:
145 self.figure.show()
271 fig.show()
146 self.plot()
272
147 plt.tight_layout()
273 fig.tight_layout()
148 self.figure.canvas.manager.set_window_title('{} {} - {}'.format(self.title, self.CODE.upper(),
274 fig.canvas.manager.set_window_title('{} - {}'.format(self.title,
149 datetime.datetime.fromtimestamp(self.max_time).strftime('%Y/%m/%d')))
275 datetime.datetime.fromtimestamp(self.max_time).strftime('%Y/%m/%d')))
150 else :
276 # fig.canvas.draw()
151 print 'len(self.figurelist): ',len(self.figurelist)
277
152 for n, eachfigure in enumerate(self.figurelist):
278 if self.save and self.data.ended:
153 if self.show:
279 channels = range(self.nrows)
154 eachfigure.show()
280 if self.oneFigure:
155
281 label = ''
156 self.plot()
282 else:
157 eachfigure.tight_layout() # ajuste de cada subplot
283 label = '_{}'.format(channels[n])
158 eachfigure.canvas.manager.set_window_title('{} {} - {}'.format(self.title[n], self.CODE.upper(),
284 figname = os.path.join(
159 datetime.datetime.fromtimestamp(self.max_time).strftime('%Y/%m/%d')))
285 self.save,
160
286 '{}{}_{}.png'.format(
161 # if self.save:
287 self.CODE,
162 # if self.ind_plt_ch is False : #standard
288 label,
163 # figname = os.path.join(self.save, '{}_{}.png'.format(self.CODE,
289 datetime.datetime.fromtimestamp(self.saveTime).strftime('%y%m%d_%H%M%S')
164 # datetime.datetime.fromtimestamp(self.saveTime).strftime('%y%m%d_%H%M%S')))
290 )
165 # print 'Saving figure: {}'.format(figname)
291 )
166 # self.figure.savefig(figname)
167 # else :
168 # for n, eachfigure in enumerate(self.figurelist):
169 # #add specific name for each channel in channelList
170 # figname = os.path.join(self.save, '{}_{}_{}.png'.format(self.titles[n],self.CODE,
171 # datetime.datetime.fromtimestamp(self.saveTime).strftime('%y%m%d_%H%M%S')))
172 #
173 # print 'Saving figure: {}'.format(figname)
174 # eachfigure.savefig(figname)
175
176 if self.ind_plt_ch is False :
177 self.figure.canvas.draw()
178 else :
179 for eachfigure in self.figurelist:
180 eachfigure.canvas.draw()
181
182 if self.save:
183 if self.ind_plt_ch is False : #standard
184 figname = os.path.join(self.save, '{}_{}.png'.format(self.CODE,
185 datetime.datetime.fromtimestamp(self.saveTime).strftime('%y%m%d_%H%M%S')))
186 print 'Saving figure: {}'.format(figname)
292 print 'Saving figure: {}'.format(figname)
187 self.figure.savefig(figname)
293 fig.savefig(figname)
188 else :
189 for n, eachfigure in enumerate(self.figurelist):
190 #add specific name for each channel in channelList
191 figname = os.path.join(self.save, '{}_{}_{}.png'.format(self.titles[n].replace(' ',''),self.CODE,
192 datetime.datetime.fromtimestamp(self.saveTime).strftime('%y%m%d_%H%M%S')))
193
194 print 'Saving figure: {}'.format(figname)
195 eachfigure.savefig(figname)
196
197
294
198 def plot(self):
295 def plot(self):
199
296 '''
200 print 'plotting...{}'.format(self.CODE.upper())
297 '''
201 return
298 raise(NotImplementedError, 'Implement this method in child class')
202
299
203 def run(self):
300 def run(self):
204
301
205 print '[Starting] {}'.format(self.name)
302 log.success('Starting', self.name)
206
303
207 context = zmq.Context()
304 context = zmq.Context()
208 receiver = context.socket(zmq.SUB)
305 receiver = context.socket(zmq.SUB)
209 receiver.setsockopt(zmq.SUBSCRIBE, '')
306 receiver.setsockopt(zmq.SUBSCRIBE, '')
210 receiver.setsockopt(zmq.CONFLATE, self.CONFLATE)
307 receiver.setsockopt(zmq.CONFLATE, self.CONFLATE)
211
308
212 if 'server' in self.kwargs['parent']:
309 if 'server' in self.kwargs['parent']:
213 receiver.connect('ipc:///tmp/{}.plots'.format(self.kwargs['parent']['server']))
310 receiver.connect('ipc:///tmp/{}.plots'.format(self.kwargs['parent']['server']))
214 else:
311 else:
215 receiver.connect("ipc:///tmp/zmq.plots")
312 receiver.connect("ipc:///tmp/zmq.plots")
216
217 seconds_passed = 0
218
313
219 while True:
314 while True:
220 try:
315 try:
221 self.data = receiver.recv_pyobj(flags=zmq.NOBLOCK)#flags=zmq.NOBLOCK
316 self.data = receiver.recv_pyobj(flags=zmq.NOBLOCK)
222 self.started = self.data['STARTED']
317
223 self.dataOut = self.data['dataOut']
318 self.min_time = self.data.times[0]
224
319 self.max_time = self.data.times[-1]
225 if (len(self.times) < len(self.data['times']) and not self.started and self.data['ENDED']):
226 continue
227
228 self.times = self.data['times']
229 self.times.sort()
230 self.throttle_value = self.data['throttle']
231 self.min_time = self.times[0]
232 self.max_time = self.times[-1]
233
320
234 if self.isConfig is False:
321 if self.isConfig is False:
235 print 'setting up'
322 self.__setup()
236 self.setup()
237 self.isConfig = True
323 self.isConfig = True
238 self.__plot()
324
239
325 self.__plot()
240 if self.data['ENDED'] is True:
241 print '********GRAPHIC ENDED********'
242 self.ended = True
243 self.isConfig = False
244 self.__plot()
245 self.deleteanotherfiles() #CLPDG
246 elif seconds_passed >= self.data['throttle']:
247 print 'passed', seconds_passed
248 self.__plot()
249 seconds_passed = 0
250
326
251 except zmq.Again as e:
327 except zmq.Again as e:
252 print 'Waiting for data...'
328 log.log('Waiting for data...')
253 plt.pause(2)
329 if self.data:
254 seconds_passed += 2
330 plt.pause(self.data.throttle)
331 else:
332 time.sleep(2)
255
333
256 def close(self):
334 def close(self):
257 if self.dataOut:
335 if self.data:
258 self.__plot()
336 self.__plot()
259
337
260
338
261 class PlotSpectraData(PlotData):
339 class PlotSpectraData(PlotData):
340 '''
341 Plot for Spectra data
342 '''
262
343
263 CODE = 'spc'
344 CODE = 'spc'
264 colormap = 'jro'
345 colormap = 'jro'
265 CONFLATE = False
266
346
267 def setup(self):
347 def setup(self):
268
348 self.nplots = len(self.data.channels)
269 ncolspan = 1
349 self.ncols = int(numpy.sqrt(self.nplots)+ 0.9)
270 colspan = 1
350 self.nrows = int((1.0*self.nplots/self.ncols) + 0.9)
271 self.ncols = int(numpy.sqrt(self.dataOut.nChannels)+0.9)
351 self.width = 3.4*self.ncols
272 self.nrows = int(self.dataOut.nChannels*1./self.ncols + 0.9)
352 self.height = 3*self.nrows
273 self.width = 3.6*self.ncols
353 self.cb_label = 'dB'
274 self.height = 3.2*self.nrows
354 if self.showprofile:
275 if self.showprofile:
355 self.width += 0.8*self.ncols
276 ncolspan = 3
277 colspan = 2
278 self.width += 1.2*self.ncols
279
356
280 self.ylabel = 'Range [Km]'
357 self.ylabel = 'Range [Km]'
281 self.titles = ['Channel {}'.format(x) for x in self.dataOut.channelList]
282
283 if self.figure is None:
284 self.figure = plt.figure(figsize=(self.width, self.height),
285 edgecolor='k',
286 facecolor='w')
287 else:
288 self.figure.clf()
289
290 n = 0
291 for y in range(self.nrows):
292 for x in range(self.ncols):
293 if n >= self.dataOut.nChannels:
294 break
295 ax = plt.subplot2grid((self.nrows, self.ncols*ncolspan), (y, x*ncolspan), 1, colspan)
296 if self.showprofile:
297 ax.ax_profile = plt.subplot2grid((self.nrows, self.ncols*ncolspan), (y, x*ncolspan+colspan), 1, 1)
298
299 ax.firsttime = True
300 self.axes.append(ax)
301 n += 1
302
358
303 def plot(self):
359 def plot(self):
304
305 if self.xaxis == "frequency":
360 if self.xaxis == "frequency":
306 x = self.dataOut.getFreqRange(1)/1000.
361 x = self.data.xrange[0]
307 xlabel = "Frequency (kHz)"
362 self.xlabel = "Frequency (kHz)"
308 elif self.xaxis == "time":
363 elif self.xaxis == "time":
309 x = self.dataOut.getAcfRange(1)
364 x = self.data.xrange[1]
310 xlabel = "Time (ms)"
365 self.xlabel = "Time (ms)"
311 else:
366 else:
312 x = self.dataOut.getVelRange(1)
367 x = self.data.xrange[2]
313 xlabel = "Velocity (m/s)"
368 self.xlabel = "Velocity (m/s)"
369
370 if self.CODE == 'spc_mean':
371 x = self.data.xrange[2]
372 self.xlabel = "Velocity (m/s)"
314
373
315 y = self.dataOut.getHeiRange()
374 self.titles = []
316 z = self.data[self.CODE]
317
375
376 y = self.data.heights
377 self.y = y
378 z = self.data['spc']
379
318 for n, ax in enumerate(self.axes):
380 for n, ax in enumerate(self.axes):
381 noise = self.data['noise'][n][-1]
382 if self.CODE == 'spc_mean':
383 mean = self.data['mean'][n][-1]
319 if ax.firsttime:
384 if ax.firsttime:
320 self.xmax = self.xmax if self.xmax else np.nanmax(x)
385 self.xmax = self.xmax if self.xmax else numpy.nanmax(x)
321 self.xmin = self.xmin if self.xmin else -self.xmax
386 self.xmin = self.xmin if self.xmin else -self.xmax
322 self.ymin = self.ymin if self.ymin else np.nanmin(y)
387 self.zmin = self.zmin if self.zmin else numpy.nanmin(z)
323 self.ymax = self.ymax if self.ymax else np.nanmax(y)
388 self.zmax = self.zmax if self.zmax else numpy.nanmax(z)
324 self.zmin = self.zmin if self.zmin else np.nanmin(z)
389 ax.plt = ax.pcolormesh(x, y, z[n].T,
325 self.zmax = self.zmax if self.zmax else np.nanmax(z)
390 vmin=self.zmin,
326 ax.plot = ax.pcolormesh(x, y, z[n].T,
391 vmax=self.zmax,
327 vmin=self.zmin,
392 cmap=plt.get_cmap(self.colormap)
328 vmax=self.zmax,
393 )
329 cmap=plt.get_cmap(self.colormap)
330 )
331 divider = make_axes_locatable(ax)
332 cax = divider.new_horizontal(size='3%', pad=0.05)
333 self.figure.add_axes(cax)
334 plt.colorbar(ax.plot, cax)
335
336 ax.set_xlim(self.xmin, self.xmax)
337 ax.set_ylim(self.ymin, self.ymax)
338
339 ax.set_ylabel(self.ylabel)
340 ax.set_xlabel(xlabel)
341
342 ax.firsttime = False
343
394
344 if self.showprofile:
395 if self.showprofile:
345 ax.plot_profile= ax.ax_profile.plot(self.data['rti'][self.max_time][n], y)[0]
396 ax.plt_profile= self.pf_axes[n].plot(self.data['rti'][n][-1], y)[0]
346 ax.ax_profile.set_xlim(self.zmin, self.zmax)
397 ax.plt_noise = self.pf_axes[n].plot(numpy.repeat(noise, len(y)), y,
347 ax.ax_profile.set_ylim(self.ymin, self.ymax)
398 color="k", linestyle="dashed", lw=1)[0]
348 ax.ax_profile.set_xlabel('dB')
399 if self.CODE == 'spc_mean':
349 ax.ax_profile.grid(b=True, axis='x')
400 ax.plt_mean = ax.plot(mean, y, color='k')[0]
350 ax.plot_noise = ax.ax_profile.plot(numpy.repeat(self.data['noise'][self.max_time][n], len(y)), y,
351 color="k", linestyle="dashed", lw=2)[0]
352 [tick.set_visible(False) for tick in ax.ax_profile.get_yticklabels()]
353 else:
401 else:
354 ax.plot.set_array(z[n].T.ravel())
402 ax.plt.set_array(z[n].T.ravel())
355 if self.showprofile:
403 if self.showprofile:
356 ax.plot_profile.set_data(self.data['rti'][self.max_time][n], y)
404 ax.plt_profile.set_data(self.data['rti'][n][-1], y)
357 ax.plot_noise.set_data(numpy.repeat(self.data['noise'][self.max_time][n], len(y)), y)
405 ax.plt_noise.set_data(numpy.repeat(noise, len(y)), y)
406 if self.CODE == 'spc_mean':
407 ax.plt_mean.set_data(mean, y)
358
408
359 ax.set_title('{} - Noise: {:.2f} dB'.format(self.titles[n], self.data['noise'][self.max_time][n]),
409 self.titles.append('CH {}: {:3.2f}dB'.format(n, noise))
360 size=8)
361 self.saveTime = self.max_time
410 self.saveTime = self.max_time
362
411
363
412
364 class PlotCrossSpectraData(PlotData):
413 class PlotCrossSpectraData(PlotData):
365
414
366 CODE = 'cspc'
415 CODE = 'cspc'
367 zmin_coh = None
416 zmin_coh = None
368 zmax_coh = None
417 zmax_coh = None
369 zmin_phase = None
418 zmin_phase = None
370 zmax_phase = None
419 zmax_phase = None
371 CONFLATE = False
372
420
373 def setup(self):
421 def setup(self):
374
422
375 ncolspan = 1
423 self.ncols = 4
376 colspan = 1
424 self.nrows = len(self.data.pairs)
377 self.ncols = 2
425 self.nplots = self.nrows*4
378 self.nrows = self.dataOut.nPairs
426 self.width = 3.4*self.ncols
379 self.width = 3.6*self.ncols
427 self.height = 3*self.nrows
380 self.height = 3.2*self.nrows
381
382 self.ylabel = 'Range [Km]'
428 self.ylabel = 'Range [Km]'
383 self.titles = ['Channel {}'.format(x) for x in self.dataOut.channelList]
429 self.showprofile = False
384
385 if self.figure is None:
386 self.figure = plt.figure(figsize=(self.width, self.height),
387 edgecolor='k',
388 facecolor='w')
389 else:
390 self.figure.clf()
391
392 for y in range(self.nrows):
393 for x in range(self.ncols):
394 ax = plt.subplot2grid((self.nrows, self.ncols), (y, x), 1, 1)
395 ax.firsttime = True
396 self.axes.append(ax)
397
430
398 def plot(self):
431 def plot(self):
399
432
400 if self.xaxis == "frequency":
433 if self.xaxis == "frequency":
401 x = self.dataOut.getFreqRange(1)/1000.
434 x = self.data.xrange[0]
402 xlabel = "Frequency (kHz)"
435 self.xlabel = "Frequency (kHz)"
403 elif self.xaxis == "time":
436 elif self.xaxis == "time":
404 x = self.dataOut.getAcfRange(1)
437 x = self.data.xrange[1]
405 xlabel = "Time (ms)"
438 self.xlabel = "Time (ms)"
406 else:
439 else:
407 x = self.dataOut.getVelRange(1)
440 x = self.data.xrange[2]
408 xlabel = "Velocity (m/s)"
441 self.xlabel = "Velocity (m/s)"
442
443 self.titles = []
409
444
410 y = self.dataOut.getHeiRange()
445 y = self.data.heights
411 z_coh = self.data['cspc_coh']
446 self.y = y
412 z_phase = self.data['cspc_phase']
447 spc = self.data['spc']
448 cspc = self.data['cspc']
413
449
414 for n in range(self.nrows):
450 for n in range(self.nrows):
415 ax = self.axes[2*n]
451 noise = self.data['noise'][n][-1]
416 ax1 = self.axes[2*n+1]
452 pair = self.data.pairs[n]
453 ax = self.axes[4*n]
454 ax3 = self.axes[4*n+3]
417 if ax.firsttime:
455 if ax.firsttime:
418 self.xmax = self.xmax if self.xmax else np.nanmax(x)
456 self.xmax = self.xmax if self.xmax else numpy.nanmax(x)
419 self.xmin = self.xmin if self.xmin else -self.xmax
457 self.xmin = self.xmin if self.xmin else -self.xmax
420 self.ymin = self.ymin if self.ymin else np.nanmin(y)
458 self.zmin = self.zmin if self.zmin else numpy.nanmin(spc)
421 self.ymax = self.ymax if self.ymax else np.nanmax(y)
459 self.zmax = self.zmax if self.zmax else numpy.nanmax(spc)
422 self.zmin_coh = self.zmin_coh if self.zmin_coh else 0.0
460 ax.plt = ax.pcolormesh(x, y, spc[pair[0]].T,
423 self.zmax_coh = self.zmax_coh if self.zmax_coh else 1.0
461 vmin=self.zmin,
424 self.zmin_phase = self.zmin_phase if self.zmin_phase else -180
462 vmax=self.zmax,
425 self.zmax_phase = self.zmax_phase if self.zmax_phase else 180
463 cmap=plt.get_cmap(self.colormap)
426
464 )
427 ax.plot = ax.pcolormesh(x, y, z_coh[n].T,
428 vmin=self.zmin_coh,
429 vmax=self.zmax_coh,
430 cmap=plt.get_cmap(self.colormap_coh)
431 )
432 divider = make_axes_locatable(ax)
433 cax = divider.new_horizontal(size='3%', pad=0.05)
434 self.figure.add_axes(cax)
435 plt.colorbar(ax.plot, cax)
436
437 ax.set_xlim(self.xmin, self.xmax)
438 ax.set_ylim(self.ymin, self.ymax)
439
440 ax.set_ylabel(self.ylabel)
441 ax.set_xlabel(xlabel)
442 ax.firsttime = False
443
444 ax1.plot = ax1.pcolormesh(x, y, z_phase[n].T,
445 vmin=self.zmin_phase,
446 vmax=self.zmax_phase,
447 cmap=plt.get_cmap(self.colormap_phase)
448 )
449 divider = make_axes_locatable(ax1)
450 cax = divider.new_horizontal(size='3%', pad=0.05)
451 self.figure.add_axes(cax)
452 plt.colorbar(ax1.plot, cax)
453
454 ax1.set_xlim(self.xmin, self.xmax)
455 ax1.set_ylim(self.ymin, self.ymax)
456
457 ax1.set_ylabel(self.ylabel)
458 ax1.set_xlabel(xlabel)
459 ax1.firsttime = False
460 else:
465 else:
461 ax.plot.set_array(z_coh[n].T.ravel())
466 ax.plt.set_array(spc[pair[0]].T.ravel())
462 ax1.plot.set_array(z_phase[n].T.ravel())
467 self.titles.append('CH {}: {:3.2f}dB'.format(n, noise))
463
464 ax.set_title('Coherence Ch{} * Ch{}'.format(self.dataOut.pairsList[n][0], self.dataOut.pairsList[n][1]), size=8)
465 ax1.set_title('Phase Ch{} * Ch{}'.format(self.dataOut.pairsList[n][0], self.dataOut.pairsList[n][1]), size=8)
466 self.saveTime = self.max_time
467
468
468
469 class PlotSpectraMeanData(PlotSpectraData):
469 ax = self.axes[4*n+1]
470
470 if ax.firsttime:
471 CODE = 'spc_mean'
471 ax.plt = ax.pcolormesh(x, y, spc[pair[1]].T,
472 colormap = 'jet'
473
474 def plot(self):
475
476 if self.xaxis == "frequency":
477 x = self.dataOut.getFreqRange(1)/1000.
478 xlabel = "Frequency (kHz)"
479 elif self.xaxis == "time":
480 x = self.dataOut.getAcfRange(1)
481 xlabel = "Time (ms)"
482 else:
483 x = self.dataOut.getVelRange(1)
484 xlabel = "Velocity (m/s)"
485
486 y = self.dataOut.getHeiRange()
487 z = self.data['spc']
488 mean = self.data['mean'][self.max_time]
489
490 for n, ax in enumerate(self.axes):
491
492 if ax.firsttime:
493 self.xmax = self.xmax if self.xmax else np.nanmax(x)
494 self.xmin = self.xmin if self.xmin else -self.xmax
495 self.ymin = self.ymin if self.ymin else np.nanmin(y)
496 self.ymax = self.ymax if self.ymax else np.nanmax(y)
497 self.zmin = self.zmin if self.zmin else np.nanmin(z)
498 self.zmax = self.zmax if self.zmax else np.nanmax(z)
499 ax.plt = ax.pcolormesh(x, y, z[n].T,
500 vmin=self.zmin,
472 vmin=self.zmin,
501 vmax=self.zmax,
473 vmax=self.zmax,
502 cmap=plt.get_cmap(self.colormap)
474 cmap=plt.get_cmap(self.colormap)
503 )
475 )
504 ax.plt_dop = ax.plot(mean[n], y,
505 color='k')[0]
506
507 divider = make_axes_locatable(ax)
508 cax = divider.new_horizontal(size='3%', pad=0.05)
509 self.figure.add_axes(cax)
510 plt.colorbar(ax.plt, cax)
511
512 ax.set_xlim(self.xmin, self.xmax)
513 ax.set_ylim(self.ymin, self.ymax)
514
515 ax.set_ylabel(self.ylabel)
516 ax.set_xlabel(xlabel)
517
518 ax.firsttime = False
519
520 if self.showprofile:
521 ax.plt_profile= ax.ax_profile.plot(self.data['rti'][self.max_time][n], y)[0]
522 ax.ax_profile.set_xlim(self.zmin, self.zmax)
523 ax.ax_profile.set_ylim(self.ymin, self.ymax)
524 ax.ax_profile.set_xlabel('dB')
525 ax.ax_profile.grid(b=True, axis='x')
526 ax.plt_noise = ax.ax_profile.plot(numpy.repeat(self.data['noise'][self.max_time][n], len(y)), y,
527 color="k", linestyle="dashed", lw=2)[0]
528 [tick.set_visible(False) for tick in ax.ax_profile.get_yticklabels()]
529 else:
476 else:
530 ax.plt.set_array(z[n].T.ravel())
477 ax.plt.set_array(spc[pair[1]].T.ravel())
531 ax.plt_dop.set_data(mean[n], y)
478 self.titles.append('CH {}: {:3.2f}dB'.format(n, noise))
532 if self.showprofile:
479
533 ax.plt_profile.set_data(self.data['rti'][self.max_time][n], y)
480 out = cspc[n]/numpy.sqrt(spc[pair[0]]*spc[pair[1]])
534 ax.plt_noise.set_data(numpy.repeat(self.data['noise'][self.max_time][n], len(y)), y)
481 coh = numpy.abs(out)
482 phase = numpy.arctan2(out.imag, out.real)*180/numpy.pi
483
484 ax = self.axes[4*n+2]
485 if ax.firsttime:
486 ax.plt = ax.pcolormesh(x, y, coh.T,
487 vmin=0,
488 vmax=1,
489 cmap=plt.get_cmap(self.colormap_coh)
490 )
491 else:
492 ax.plt.set_array(coh.T.ravel())
493 self.titles.append('Coherence Ch{} * Ch{}'.format(pair[0], pair[1]))
535
494
536 ax.set_title('{} - Noise: {:.2f} dB'.format(self.titles[n], self.data['noise'][self.max_time][n]),
495 ax = self.axes[4*n+3]
537 size=8)
496 if ax.firsttime:
497 ax.plt = ax.pcolormesh(x, y, phase.T,
498 vmin=-180,
499 vmax=180,
500 cmap=plt.get_cmap(self.colormap_phase)
501 )
502 else:
503 ax.plt.set_array(phase.T.ravel())
504 self.titles.append('Phase CH{} * CH{}'.format(pair[0], pair[1]))
505
538 self.saveTime = self.max_time
506 self.saveTime = self.max_time
539
507
540
508
509 class PlotSpectraMeanData(PlotSpectraData):
510 '''
511 Plot for Spectra and Mean
512 '''
513 CODE = 'spc_mean'
514 colormap = 'jro'
515
516
541 class PlotRTIData(PlotData):
517 class PlotRTIData(PlotData):
518 '''
519 Plot for RTI data
520 '''
542
521
543 CODE = 'rti'
522 CODE = 'rti'
544 colormap = 'jro'
523 colormap = 'jro'
545
524
546 def setup(self):
525 def setup(self):
547 self.ncols = 1
526 self.xaxis = 'time'
548 self.nrows = self.dataOut.nChannels
527 self.ncols = 1
549 self.width = 10
528 self.nrows = len(self.data.channels)
550 #TODO : arreglar la altura de la figura, esta hardcodeada.
529 self.nplots = len(self.data.channels)
551 #Se arreglo, testear!
552 if self.ind_plt_ch:
553 self.height = 3.2#*self.nrows if self.nrows<6 else 12
554 else:
555 self.height = 2.2*self.nrows if self.nrows<6 else 12
556
557 '''
558 if self.nrows==1:
559 self.height += 1
560 '''
561 self.ylabel = 'Range [Km]'
530 self.ylabel = 'Range [Km]'
562 self.titles = ['Channel {}'.format(x) for x in self.dataOut.channelList]
531 self.cb_label = 'dB'
563
532 self.titles = ['{} Channel {}'.format(self.CODE.upper(), x) for x in range(self.nrows)]
564 '''
565 Logica:
566 1) Si la variable ind_plt_ch es True, va a crear mas de 1 figura
567 2) guardamos "Figures" en una lista y "axes" en otra, quizas se deberia guardar el
568 axis dentro de "Figures" como un diccionario.
569 '''
570 if self.ind_plt_ch is False: #standard mode
571
572 if self.figure is None: #solo para la priemra vez
573 self.figure = plt.figure(figsize=(self.width, self.height),
574 edgecolor='k',
575 facecolor='w')
576 else:
577 self.figure.clf()
578 self.axes = []
579
580
581 for n in range(self.nrows):
582 ax = self.figure.add_subplot(self.nrows, self.ncols, n+1)
583 #ax = self.figure(n+1)
584 ax.firsttime = True
585 self.axes.append(ax)
586
587 else : #append one figure foreach channel in channelList
588 if self.figurelist == None:
589 self.figurelist = []
590 for n in range(self.nrows):
591 self.figure = plt.figure(figsize=(self.width, self.height),
592 edgecolor='k',
593 facecolor='w')
594 #add always one subplot
595 self.figurelist.append(self.figure)
596
597 else : # cada dia nuevo limpia el axes, pero mantiene el figure
598 for eachfigure in self.figurelist:
599 eachfigure.clf() # eliminaria todas las figuras de la lista?
600 self.axes = []
601
602 for eachfigure in self.figurelist:
603 ax = eachfigure.add_subplot(1,1,1) #solo 1 axis por figura
604 #ax = self.figure(n+1)
605 ax.firsttime = True
606 #Cada figura tiene un distinto puntero
607 self.axes.append(ax)
608 #plt.close(eachfigure)
609
610
533
611 def plot(self):
534 def plot(self):
535 self.x = self.data.times
536 self.y = self.data.heights
537 self.z = self.data[self.CODE]
538 self.z = numpy.ma.masked_invalid(self.z)
612
539
613 if self.ind_plt_ch is False: #standard mode
540 for n, ax in enumerate(self.axes):
614 self.x = np.array(self.times)
541 x, y, z = self.fill_gaps(*self.decimate())
615 self.y = self.dataOut.getHeiRange()
542 self.zmin = self.zmin if self.zmin else numpy.min(self.z)
616 self.z = []
543 self.zmax = self.zmax if self.zmax else numpy.max(self.z)
617
544 if ax.firsttime:
618 for ch in range(self.nrows):
545 ax.plt = ax.pcolormesh(x, y, z[n].T,
619 self.z.append([self.data[self.CODE][t][ch] for t in self.times])
546 vmin=self.zmin,
620
547 vmax=self.zmax,
621 self.z = np.array(self.z)
548 cmap=plt.get_cmap(self.colormap)
622 for n, ax in enumerate(self.axes):
549 )
623 x, y, z = self.fill_gaps(*self.decimate())
550 if self.showprofile:
624 if self.xmin is None:
551 ax.plot_profile= self.pf_axes[n].plot(self.data['rti'][n][-1], self.y)[0]
625 xmin = self.min_time
552 ax.plot_noise = self.pf_axes[n].plot(numpy.repeat(self.data['noise'][n][-1], len(self.y)), self.y,
626 else:
553 color="k", linestyle="dashed", lw=1)[0]
627 xmin = fromtimestamp(int(self.xmin), self.min_time)
554 else:
628 if self.xmax is None:
555 ax.collections.remove(ax.collections[0])
629 xmax = xmin + self.xrange*60*60
556 ax.plt = ax.pcolormesh(x, y, z[n].T,
630 else:
557 vmin=self.zmin,
631 xmax = xmin + (self.xmax - self.xmin) * 60 * 60
558 vmax=self.zmax,
632 self.zmin = self.zmin if self.zmin else np.min(self.z)
559 cmap=plt.get_cmap(self.colormap)
633 self.zmax = self.zmax if self.zmax else np.max(self.z)
560 )
634 if ax.firsttime:
561 if self.showprofile:
635 self.ymin = self.ymin if self.ymin else np.nanmin(self.y)
562 ax.plot_profile.set_data(self.data['rti'][n][-1], self.y)
636 self.ymax = self.ymax if self.ymax else np.nanmax(self.y)
563 ax.plot_noise.set_data(numpy.repeat(self.data['noise'][n][-1], len(self.y)), self.y)
637 plot = ax.pcolormesh(x, y, z[n].T,
638 vmin=self.zmin,
639 vmax=self.zmax,
640 cmap=plt.get_cmap(self.colormap)
641 )
642 divider = make_axes_locatable(ax)
643 cax = divider.new_horizontal(size='2%', pad=0.05)
644 self.figure.add_axes(cax)
645 plt.colorbar(plot, cax)
646 ax.set_ylim(self.ymin, self.ymax)
647 ax.xaxis.set_major_formatter(FuncFormatter(func))
648 ax.xaxis.set_major_locator(LinearLocator(6))
649 ax.set_ylabel(self.ylabel)
650 # if self.xmin is None:
651 # xmin = self.min_time
652 # else:
653 # xmin = (datetime.datetime.combine(self.dataOut.datatime.date(),
654 # datetime.time(self.xmin, 0, 0))-d1970).total_seconds()
655
656 ax.set_xlim(xmin, xmax)
657 ax.firsttime = False
658 else:
659 ax.collections.remove(ax.collections[0])
660 ax.set_xlim(xmin, xmax)
661 plot = ax.pcolormesh(x, y, z[n].T,
662 vmin=self.zmin,
663 vmax=self.zmax,
664 cmap=plt.get_cmap(self.colormap)
665 )
666 ax.set_title('{} {}'.format(self.titles[n],
667 datetime.datetime.fromtimestamp(self.max_time).strftime('%y/%m/%d %H:%M:%S')),
668 size=8)
669
670 self.saveTime = self.min_time
671 else :
672 self.x = np.array(self.times)
673 self.y = self.dataOut.getHeiRange()
674 self.z = []
675
676 for ch in range(self.nrows):
677 self.z.append([self.data[self.CODE][t][ch] for t in self.times])
678
679 self.z = np.array(self.z)
680 for n, eachfigure in enumerate(self.figurelist): #estaba ax in axes
681
682 x, y, z = self.fill_gaps(*self.decimate())
683 xmin = self.min_time
684 xmax = xmin+self.xrange*60*60
685 self.zmin = self.zmin if self.zmin else np.min(self.z)
686 self.zmax = self.zmax if self.zmax else np.max(self.z)
687 if self.axes[n].firsttime:
688 self.ymin = self.ymin if self.ymin else np.nanmin(self.y)
689 self.ymax = self.ymax if self.ymax else np.nanmax(self.y)
690 plot = self.axes[n].pcolormesh(x, y, z[n].T,
691 vmin=self.zmin,
692 vmax=self.zmax,
693 cmap=plt.get_cmap(self.colormap)
694 )
695 divider = make_axes_locatable(self.axes[n])
696 cax = divider.new_horizontal(size='2%', pad=0.05)
697 eachfigure.add_axes(cax)
698 #self.figure2.add_axes(cax)
699 plt.colorbar(plot, cax)
700 self.axes[n].set_ylim(self.ymin, self.ymax)
701
702 self.axes[n].xaxis.set_major_formatter(FuncFormatter(func))
703 self.axes[n].xaxis.set_major_locator(LinearLocator(6))
704
705 self.axes[n].set_ylabel(self.ylabel)
706
707 if self.xmin is None:
708 xmin = self.min_time
709 else:
710 xmin = (datetime.datetime.combine(self.dataOut.datatime.date(),
711 datetime.time(self.xmin, 0, 0))-d1970).total_seconds()
712
713 self.axes[n].set_xlim(xmin, xmax)
714 self.axes[n].firsttime = False
715 else:
716 self.axes[n].collections.remove(self.axes[n].collections[0])
717 self.axes[n].set_xlim(xmin, xmax)
718 plot = self.axes[n].pcolormesh(x, y, z[n].T,
719 vmin=self.zmin,
720 vmax=self.zmax,
721 cmap=plt.get_cmap(self.colormap)
722 )
723 self.axes[n].set_title('{} {}'.format(self.titles[n],
724 datetime.datetime.fromtimestamp(self.max_time).strftime('%y/%m/%d %H:%M:%S')),
725 size=8)
726
564
727 self.saveTime = self.min_time
565 self.saveTime = self.min_time
728
566
729
567
730 class PlotCOHData(PlotRTIData):
568 class PlotCOHData(PlotRTIData):
569 '''
570 Plot for Coherence data
571 '''
731
572
732 CODE = 'coh'
573 CODE = 'coh'
733
574
734 def setup(self):
575 def setup(self):
735
576 self.xaxis = 'time'
736 self.ncols = 1
577 self.ncols = 1
737 self.nrows = self.dataOut.nPairs
578 self.nrows = len(self.data.pairs)
738 self.width = 10
579 self.nplots = len(self.data.pairs)
739 self.height = 2.2*self.nrows if self.nrows<6 else 12
580 self.ylabel = 'Range [Km]'
740 self.ind_plt_ch = False #just for coherence and phase
581 if self.CODE == 'coh':
741 if self.nrows==1:
582 self.cb_label = ''
742 self.height += 1
583 self.titles = ['Coherence Map Ch{} * Ch{}'.format(x[0], x[1]) for x in self.data.pairs]
743 self.ylabel = 'Range [Km]'
744 self.titles = ['{} Ch{} * Ch{}'.format(self.CODE.upper(), x[0], x[1]) for x in self.dataOut.pairsList]
745
746 if self.figure is None:
747 self.figure = plt.figure(figsize=(self.width, self.height),
748 edgecolor='k',
749 facecolor='w')
750 else:
584 else:
751 self.figure.clf()
585 self.cb_label = 'Degrees'
752 self.axes = []
586 self.titles = ['Phase Map Ch{} * Ch{}'.format(x[0], x[1]) for x in self.data.pairs]
753
587
754 for n in range(self.nrows):
588
755 ax = self.figure.add_subplot(self.nrows, self.ncols, n+1)
589 class PlotPHASEData(PlotCOHData):
756 ax.firsttime = True
590 '''
757 self.axes.append(ax)
591 Plot for Phase map data
592 '''
593
594 CODE = 'phase'
595 colormap = 'seismic'
758
596
759
597
760 class PlotNoiseData(PlotData):
598 class PlotNoiseData(PlotData):
599 '''
600 Plot for noise
601 '''
602
761 CODE = 'noise'
603 CODE = 'noise'
762
604
763 def setup(self):
605 def setup(self):
764
606 self.xaxis = 'time'
765 self.ncols = 1
607 self.ncols = 1
766 self.nrows = 1
608 self.nrows = 1
767 self.width = 10
609 self.nplots = 1
768 self.height = 3.2
769 self.ylabel = 'Intensity [dB]'
610 self.ylabel = 'Intensity [dB]'
770 self.titles = ['Noise']
611 self.titles = ['Noise']
771
612 self.colorbar = False
772 if self.figure is None:
773 self.figure = plt.figure(figsize=(self.width, self.height),
774 edgecolor='k',
775 facecolor='w')
776 else:
777 self.figure.clf()
778 self.axes = []
779
780 self.ax = self.figure.add_subplot(self.nrows, self.ncols, 1)
781 self.ax.firsttime = True
782
613
783 def plot(self):
614 def plot(self):
784
615
785 x = self.times
616 x = self.data.times
786 xmin = self.min_time
617 xmin = self.min_time
787 xmax = xmin+self.xrange*60*60
618 xmax = xmin+self.xrange*60*60
788 if self.ax.firsttime:
619 Y = self.data[self.CODE]
789 for ch in self.dataOut.channelList:
620
790 y = [self.data[self.CODE][t][ch] for t in self.times]
621 if self.axes[0].firsttime:
791 self.ax.plot(x, y, lw=1, label='Ch{}'.format(ch))
622 for ch in self.data.channels:
792 self.ax.firsttime = False
623 y = Y[ch]
793 self.ax.xaxis.set_major_formatter(FuncFormatter(func))
624 self.axes[0].plot(x, y, lw=1, label='Ch{}'.format(ch))
794 self.ax.xaxis.set_major_locator(LinearLocator(6))
795 self.ax.set_ylabel(self.ylabel)
796 plt.legend()
625 plt.legend()
797 else:
626 else:
798 for ch in self.dataOut.channelList:
627 for ch in self.data.channels:
799 y = [self.data[self.CODE][t][ch] for t in self.times]
628 y = Y[ch]
800 self.ax.lines[ch].set_data(x, y)
629 self.axes[0].lines[ch].set_data(x, y)
801
630
802 self.ax.set_xlim(xmin, xmax)
631 self.ymin = numpy.nanmin(Y) - 5
803 self.ax.set_ylim(min(y)-5, max(y)+5)
632 self.ymax = numpy.nanmax(Y) + 5
804 self.saveTime = self.min_time
633 self.saveTime = self.min_time
805
634
806
635
807 class PlotWindProfilerData(PlotRTIData):
808
809 CODE = 'wind'
810 colormap = 'seismic'
811
812 def setup(self):
813 self.ncols = 1
814 self.nrows = self.dataOut.data_output.shape[0]
815 self.width = 10
816 self.height = 2.2*self.nrows
817 self.ylabel = 'Height [Km]'
818 self.titles = ['Zonal Wind' ,'Meridional Wind', 'Vertical Wind']
819 self.clabels = ['Velocity (m/s)','Velocity (m/s)','Velocity (cm/s)']
820 self.windFactor = [1, 1, 100]
821
822 if self.figure is None:
823 self.figure = plt.figure(figsize=(self.width, self.height),
824 edgecolor='k',
825 facecolor='w')
826 else:
827 self.figure.clf()
828 self.axes = []
829
830 for n in range(self.nrows):
831 ax = self.figure.add_subplot(self.nrows, self.ncols, n+1)
832 ax.firsttime = True
833 self.axes.append(ax)
834
835 def plot(self):
836
837 self.x = np.array(self.times)
838 self.y = self.dataOut.heightList
839 self.z = []
840
841 for ch in range(self.nrows):
842 self.z.append([self.data['output'][t][ch] for t in self.times])
843
844 self.z = np.array(self.z)
845 self.z = numpy.ma.masked_invalid(self.z)
846
847 cmap=plt.get_cmap(self.colormap)
848 cmap.set_bad('black', 1.)
849
850 for n, ax in enumerate(self.axes):
851 x, y, z = self.fill_gaps(*self.decimate())
852 xmin = self.min_time
853 xmax = xmin+self.xrange*60*60
854 if ax.firsttime:
855 self.ymin = self.ymin if self.ymin else np.nanmin(self.y)
856 self.ymax = self.ymax if self.ymax else np.nanmax(self.y)
857 self.zmax = self.zmax if self.zmax else numpy.nanmax(abs(self.z[:-1, :]))
858 self.zmin = self.zmin if self.zmin else -self.zmax
859
860 plot = ax.pcolormesh(x, y, z[n].T*self.windFactor[n],
861 vmin=self.zmin,
862 vmax=self.zmax,
863 cmap=cmap
864 )
865 divider = make_axes_locatable(ax)
866 cax = divider.new_horizontal(size='2%', pad=0.05)
867 self.figure.add_axes(cax)
868 cb = plt.colorbar(plot, cax)
869 cb.set_label(self.clabels[n])
870 ax.set_ylim(self.ymin, self.ymax)
871
872 ax.xaxis.set_major_formatter(FuncFormatter(func))
873 ax.xaxis.set_major_locator(LinearLocator(6))
874
875 ax.set_ylabel(self.ylabel)
876
877 ax.set_xlim(xmin, xmax)
878 ax.firsttime = False
879 else:
880 ax.collections.remove(ax.collections[0])
881 ax.set_xlim(xmin, xmax)
882 plot = ax.pcolormesh(x, y, z[n].T*self.windFactor[n],
883 vmin=self.zmin,
884 vmax=self.zmax,
885 cmap=plt.get_cmap(self.colormap)
886 )
887 ax.set_title('{} {}'.format(self.titles[n],
888 datetime.datetime.fromtimestamp(self.max_time).strftime('%y/%m/%d %H:%M:%S')),
889 size=8)
890
891 self.saveTime = self.min_time
892
893
894 class PlotSNRData(PlotRTIData):
636 class PlotSNRData(PlotRTIData):
637 '''
638 Plot for SNR Data
639 '''
640
895 CODE = 'snr'
641 CODE = 'snr'
896 colormap = 'jet'
642 colormap = 'jet'
897
643
644
898 class PlotDOPData(PlotRTIData):
645 class PlotDOPData(PlotRTIData):
646 '''
647 Plot for DOPPLER Data
648 '''
649
899 CODE = 'dop'
650 CODE = 'dop'
900 colormap = 'jet'
651 colormap = 'jet'
901
652
902
653
903 class PlotPHASEData(PlotCOHData):
904 CODE = 'phase'
905 colormap = 'seismic'
906
907
908 class PlotSkyMapData(PlotData):
654 class PlotSkyMapData(PlotData):
655 '''
656 Plot for meteors detection data
657 '''
909
658
910 CODE = 'met'
659 CODE = 'met'
911
660
912 def setup(self):
661 def setup(self):
913
662
914 self.ncols = 1
663 self.ncols = 1
915 self.nrows = 1
664 self.nrows = 1
916 self.width = 7.2
665 self.width = 7.2
917 self.height = 7.2
666 self.height = 7.2
918
667
919 self.xlabel = 'Zonal Zenith Angle (deg)'
668 self.xlabel = 'Zonal Zenith Angle (deg)'
920 self.ylabel = 'Meridional Zenith Angle (deg)'
669 self.ylabel = 'Meridional Zenith Angle (deg)'
921
670
922 if self.figure is None:
671 if self.figure is None:
923 self.figure = plt.figure(figsize=(self.width, self.height),
672 self.figure = plt.figure(figsize=(self.width, self.height),
924 edgecolor='k',
673 edgecolor='k',
925 facecolor='w')
674 facecolor='w')
926 else:
675 else:
927 self.figure.clf()
676 self.figure.clf()
928
677
929 self.ax = plt.subplot2grid((self.nrows, self.ncols), (0, 0), 1, 1, polar=True)
678 self.ax = plt.subplot2grid((self.nrows, self.ncols), (0, 0), 1, 1, polar=True)
930 self.ax.firsttime = True
679 self.ax.firsttime = True
931
680
932
681
933 def plot(self):
682 def plot(self):
934
683
935 arrayParameters = np.concatenate([self.data['param'][t] for t in self.times])
684 arrayParameters = numpy.concatenate([self.data['param'][t] for t in self.data.times])
936 error = arrayParameters[:,-1]
685 error = arrayParameters[:,-1]
937 indValid = numpy.where(error == 0)[0]
686 indValid = numpy.where(error == 0)[0]
938 finalMeteor = arrayParameters[indValid,:]
687 finalMeteor = arrayParameters[indValid,:]
939 finalAzimuth = finalMeteor[:,3]
688 finalAzimuth = finalMeteor[:,3]
940 finalZenith = finalMeteor[:,4]
689 finalZenith = finalMeteor[:,4]
941
690
942 x = finalAzimuth*numpy.pi/180
691 x = finalAzimuth*numpy.pi/180
943 y = finalZenith
692 y = finalZenith
944
693
945 if self.ax.firsttime:
694 if self.ax.firsttime:
946 self.ax.plot = self.ax.plot(x, y, 'bo', markersize=5)[0]
695 self.ax.plot = self.ax.plot(x, y, 'bo', markersize=5)[0]
947 self.ax.set_ylim(0,90)
696 self.ax.set_ylim(0,90)
948 self.ax.set_yticks(numpy.arange(0,90,20))
697 self.ax.set_yticks(numpy.arange(0,90,20))
949 self.ax.set_xlabel(self.xlabel)
698 self.ax.set_xlabel(self.xlabel)
950 self.ax.set_ylabel(self.ylabel)
699 self.ax.set_ylabel(self.ylabel)
951 self.ax.yaxis.labelpad = 40
700 self.ax.yaxis.labelpad = 40
952 self.ax.firsttime = False
701 self.ax.firsttime = False
953 else:
702 else:
954 self.ax.plot.set_data(x, y)
703 self.ax.plot.set_data(x, y)
955
704
956
705
957 dt1 = datetime.datetime.fromtimestamp(self.min_time).strftime('%y/%m/%d %H:%M:%S')
706 dt1 = datetime.datetime.fromtimestamp(self.min_time).strftime('%y/%m/%d %H:%M:%S')
958 dt2 = datetime.datetime.fromtimestamp(self.max_time).strftime('%y/%m/%d %H:%M:%S')
707 dt2 = datetime.datetime.fromtimestamp(self.max_time).strftime('%y/%m/%d %H:%M:%S')
959 title = 'Meteor Detection Sky Map\n %s - %s \n Number of events: %5.0f\n' % (dt1,
708 title = 'Meteor Detection Sky Map\n %s - %s \n Number of events: %5.0f\n' % (dt1,
960 dt2,
709 dt2,
961 len(x))
710 len(x))
962 self.ax.set_title(title, size=8)
711 self.ax.set_title(title, size=8)
963
712
964 self.saveTime = self.max_time
713 self.saveTime = self.max_time
714
715 class PlotParamData(PlotRTIData):
716 '''
717 Plot for data_param object
718 '''
719
720 CODE = 'param'
721 colormap = 'seismic'
722
723 def setup(self):
724 self.xaxis = 'time'
725 self.ncols = 1
726 self.nrows = self.data.shape(self.CODE)[0]
727 self.nplots = self.nrows
728 if self.showSNR:
729 self.nrows += 1
730
731 self.ylabel = 'Height [Km]'
732 self.titles = self.data.parameters \
733 if self.data.parameters else ['Param {}'.format(x) for x in xrange(self.nrows)]
734 if self.showSNR:
735 self.titles.append('SNR')
736
737 def plot(self):
738 self.data.normalize_heights()
739 self.x = self.data.times
740 self.y = self.data.heights
741 if self.showSNR:
742 self.z = numpy.concatenate(
743 (self.data[self.CODE], self.data['snr'])
744 )
745 else:
746 self.z = self.data[self.CODE]
747
748 self.z = numpy.ma.masked_invalid(self.z)
749
750 for n, ax in enumerate(self.axes):
751
752 x, y, z = self.fill_gaps(*self.decimate())
753
754 if ax.firsttime:
755 if self.zlimits is not None:
756 self.zmin, self.zmax = self.zlimits[n]
757 self.zmax = self.zmax if self.zmax is not None else numpy.nanmax(abs(self.z[:-1, :]))
758 self.zmin = self.zmin if self.zmin is not None else -self.zmax
759 ax.plt = ax.pcolormesh(x, y, z[n, :, :].T*self.factors[n],
760 vmin=self.zmin,
761 vmax=self.zmax,
762 cmap=self.cmaps[n]
763 )
764 else:
765 if self.zlimits is not None:
766 self.zmin, self.zmax = self.zlimits[n]
767 ax.collections.remove(ax.collections[0])
768 ax.plt = ax.pcolormesh(x, y, z[n, :, :].T*self.factors[n],
769 vmin=self.zmin,
770 vmax=self.zmax,
771 cmap=self.cmaps[n]
772 )
773
774 self.saveTime = self.min_time
775
776 class PlotOuputData(PlotParamData):
777 '''
778 Plot data_output object
779 '''
780
781 CODE = 'output'
782 colormap = 'seismic' No newline at end of file
Show file before | Show file after | Hide comments
@@ -1,692 +1,692
1 '''
1 '''
2 @author: Daniel Suarez
2 @author: Daniel Suarez
3 '''
3 '''
4
4
5 import os
5 import os
6 import sys
6 import sys
7 import glob
7 import glob
8 import fnmatch
8 import fnmatch
9 import datetime
9 import datetime
10 import time
10 import time
11 import re
11 import re
12 import h5py
12 import h5py
13 import numpy
13 import numpy
14
14
15 from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation
15 from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation
16 from schainpy.model.data.jroamisr import AMISR
16 from schainpy.model.data.jroamisr import AMISR
17
17
18 try:
18 try:
19 from gevent import sleep
19 from gevent import sleep
20 except:
20 except:
21 from time import sleep
21 from time import sleep
22
22
23 class RadacHeader():
23 class RadacHeader():
24 def __init__(self, fp):
24 def __init__(self, fp):
25 header = 'Raw11/Data/RadacHeader'
25 header = 'Raw11/Data/RadacHeader'
26 self.beamCodeByPulse = fp.get(header+'/BeamCode')
26 self.beamCodeByPulse = fp.get(header+'/BeamCode')
27 self.beamCode = fp.get('Raw11/Data/Beamcodes')
27 self.beamCode = fp.get('Raw11/Data/Beamcodes')
28 self.code = fp.get(header+'/Code')
28 self.code = fp.get(header+'/Code')
29 self.frameCount = fp.get(header+'/FrameCount')
29 self.frameCount = fp.get(header+'/FrameCount')
30 self.modeGroup = fp.get(header+'/ModeGroup')
30 self.modeGroup = fp.get(header+'/ModeGroup')
31 self.nsamplesPulse = fp.get(header+'/NSamplesPulse')
31 self.nsamplesPulse = fp.get(header+'/NSamplesPulse')
32 self.pulseCount = fp.get(header+'/PulseCount')
32 self.pulseCount = fp.get(header+'/PulseCount')
33 self.radacTime = fp.get(header+'/RadacTime')
33 self.radacTime = fp.get(header+'/RadacTime')
34 self.timeCount = fp.get(header+'/TimeCount')
34 self.timeCount = fp.get(header+'/TimeCount')
35 self.timeStatus = fp.get(header+'/TimeStatus')
35 self.timeStatus = fp.get(header+'/TimeStatus')
36
36
37 self.nrecords = self.pulseCount.shape[0] #nblocks
37 self.nrecords = self.pulseCount.shape[0] #nblocks
38 self.npulses = self.pulseCount.shape[1] #nprofile
38 self.npulses = self.pulseCount.shape[1] #nprofile
39 self.nsamples = self.nsamplesPulse[0,0] #ngates
39 self.nsamples = self.nsamplesPulse[0,0] #ngates
40 self.nbeams = self.beamCode.shape[1]
40 self.nbeams = self.beamCode.shape[1]
41
41
42
42
43 def getIndexRangeToPulse(self, idrecord=0):
43 def getIndexRangeToPulse(self, idrecord=0):
44 #indexToZero = numpy.where(self.pulseCount.value[idrecord,:]==0)
44 #indexToZero = numpy.where(self.pulseCount.value[idrecord,:]==0)
45 #startPulseCountId = indexToZero[0][0]
45 #startPulseCountId = indexToZero[0][0]
46 #endPulseCountId = startPulseCountId - 1
46 #endPulseCountId = startPulseCountId - 1
47 #range1 = numpy.arange(startPulseCountId,self.npulses,1)
47 #range1 = numpy.arange(startPulseCountId,self.npulses,1)
48 #range2 = numpy.arange(0,startPulseCountId,1)
48 #range2 = numpy.arange(0,startPulseCountId,1)
49 #return range1, range2
49 #return range1, range2
50 zero = 0
50 zero = 0
51 npulse = max(self.pulseCount[0,:]+1)-1
51 npulse = max(self.pulseCount[0,:]+1)-1
52 looking_index = numpy.where(self.pulseCount.value[idrecord,:]==npulse)[0]
52 looking_index = numpy.where(self.pulseCount.value[idrecord,:]==npulse)[0]
53 getLastIndex = looking_index[-1]
53 getLastIndex = looking_index[-1]
54 index_data = numpy.arange(0,getLastIndex+1,1)
54 index_data = numpy.arange(0,getLastIndex+1,1)
55 index_buffer = numpy.arange(getLastIndex+1,self.npulses,1)
55 index_buffer = numpy.arange(getLastIndex+1,self.npulses,1)
56 return index_data, index_buffer
56 return index_data, index_buffer
57
57
58 class AMISRReader(ProcessingUnit):
58 class AMISRReader(ProcessingUnit):
59
59
60 path = None
60 path = None
61 startDate = None
61 startDate = None
62 endDate = None
62 endDate = None
63 startTime = None
63 startTime = None
64 endTime = None
64 endTime = None
65 walk = None
65 walk = None
66 isConfig = False
66 isConfig = False
67
67
68 def __init__(self):
68 def __init__(self):
69 self.set = None
69 self.set = None
70 self.subset = None
70 self.subset = None
71 self.extension_file = '.h5'
71 self.extension_file = '.h5'
72 self.dtc_str = 'dtc'
72 self.dtc_str = 'dtc'
73 self.dtc_id = 0
73 self.dtc_id = 0
74 self.status = True
74 self.status = True
75 self.isConfig = False
75 self.isConfig = False
76 self.dirnameList = []
76 self.dirnameList = []
77 self.filenameList = []
77 self.filenameList = []
78 self.fileIndex = None
78 self.fileIndex = None
79 self.flagNoMoreFiles = False
79 self.flagNoMoreFiles = False
80 self.flagIsNewFile = 0
80 self.flagIsNewFile = 0
81 self.filename = ''
81 self.filename = ''
82 self.amisrFilePointer = None
82 self.amisrFilePointer = None
83 self.radacHeaderObj = None
83 self.radacHeaderObj = None
84 self.dataOut = self.__createObjByDefault()
84 self.dataOut = self.__createObjByDefault()
85 self.datablock = None
85 self.datablock = None
86 self.rest_datablock = None
86 self.rest_datablock = None
87 self.range = None
87 self.range = None
88 self.idrecord_count = 0
88 self.idrecord_count = 0
89 self.profileIndex = 0
89 self.profileIndex = 0
90 self.index_amisr_sample = None
90 self.index_amisr_sample = None
91 self.index_amisr_buffer = None
91 self.index_amisr_buffer = None
92 self.beamCodeByFrame = None
92 self.beamCodeByFrame = None
93 self.radacTimeByFrame = None
93 self.radacTimeByFrame = None
94 #atributos originales tal y como esta en el archivo de datos
94 #atributos originales tal y como esta en el archivo de datos
95 self.beamCodesFromFile = None
95 self.beamCodesFromFile = None
96 self.radacTimeFromFile = None
96 self.radacTimeFromFile = None
97 self.rangeFromFile = None
97 self.rangeFromFile = None
98 self.dataByFrame = None
98 self.dataByFrame = None
99 self.dataset = None
99 self.dataset = None
100
100
101 self.beamCodeDict = {}
101 self.beamCodeDict = {}
102 self.beamRangeDict = {}
102 self.beamRangeDict = {}
103
103
104 #experiment cgf file
104 #experiment cgf file
105 self.npulsesint_fromfile = None
105 self.npulsesint_fromfile = None
106 self.recordsperfile_fromfile = None
106 self.recordsperfile_fromfile = None
107 self.nbeamcodes_fromfile = None
107 self.nbeamcodes_fromfile = None
108 self.ngates_fromfile = None
108 self.ngates_fromfile = None
109 self.ippSeconds_fromfile = None
109 self.ippSeconds_fromfile = None
110 self.frequency_h5file = None
110 self.frequency_h5file = None
111
111
112
112
113 self.__firstFile = True
113 self.__firstFile = True
114 self.buffer_radactime = None
114 self.buffer_radactime = None
115
115
116 self.index4_schain_datablock = None
116 self.index4_schain_datablock = None
117 self.index4_buffer = None
117 self.index4_buffer = None
118 self.schain_datablock = None
118 self.schain_datablock = None
119 self.buffer = None
119 self.buffer = None
120 self.linear_pulseCount = None
120 self.linear_pulseCount = None
121 self.npulseByFrame = None
121 self.npulseByFrame = None
122 self.profileIndex_offset = None
122 self.profileIndex_offset = None
123 self.timezone = 'ut'
123 self.timezone = 'ut'
124
124
125 self.__waitForNewFile = 20
125 self.__waitForNewFile = 20
126 self.__filename_online = None
126 self.__filename_online = None
127
127
128 def __createObjByDefault(self):
128 def __createObjByDefault(self):
129
129
130 dataObj = AMISR()
130 dataObj = AMISR()
131
131
132 return dataObj
132 return dataObj
133
133
134 def __setParameters(self,path='', startDate='',endDate='',startTime='', endTime='', walk=''):
134 def __setParameters(self,path='', startDate='',endDate='',startTime='', endTime='', walk=''):
135 self.path = path
135 self.path = path
136 self.startDate = startDate
136 self.startDate = startDate
137 self.endDate = endDate
137 self.endDate = endDate
138 self.startTime = startTime
138 self.startTime = startTime
139 self.endTime = endTime
139 self.endTime = endTime
140 self.walk = walk
140 self.walk = walk
141
141
142 def __checkPath(self):
142 def __checkPath(self):
143 if os.path.exists(self.path):
143 if os.path.exists(self.path):
144 self.status = 1
144 self.status = 1
145 else:
145 else:
146 self.status = 0
146 self.status = 0
147 print 'Path:%s does not exists'%self.path
147 print 'Path:%s does not exists'%self.path
148
148
149 return
149 return
150
150
151 def __selDates(self, amisr_dirname_format):
151 def __selDates(self, amisr_dirname_format):
152 try:
152 try:
153 year = int(amisr_dirname_format[0:4])
153 year = int(amisr_dirname_format[0:4])
154 month = int(amisr_dirname_format[4:6])
154 month = int(amisr_dirname_format[4:6])
155 dom = int(amisr_dirname_format[6:8])
155 dom = int(amisr_dirname_format[6:8])
156 thisDate = datetime.date(year,month,dom)
156 thisDate = datetime.date(year,month,dom)
157
157
158 if (thisDate>=self.startDate and thisDate <= self.endDate):
158 if (thisDate>=self.startDate and thisDate <= self.endDate):
159 return amisr_dirname_format
159 return amisr_dirname_format
160 except:
160 except:
161 return None
161 return None
162
162
163 def __findDataForDates(self,online=False):
163 def __findDataForDates(self,online=False):
164
164
165
165
166
166
167 if not(self.status):
167 if not(self.status):
168 return None
168 return None
169
169
170 pat = '\d+.\d+'
170 pat = '\d+.\d+'
171 dirnameList = [re.search(pat,x) for x in os.listdir(self.path)]
171 dirnameList = [re.search(pat,x) for x in os.listdir(self.path)]
172 dirnameList = filter(lambda x:x!=None,dirnameList)
172 dirnameList = filter(lambda x:x!=None,dirnameList)
173 dirnameList = [x.string for x in dirnameList]
173 dirnameList = [x.string for x in dirnameList]
174 if not(online):
174 if not(online):
175 dirnameList = [self.__selDates(x) for x in dirnameList]
175 dirnameList = [self.__selDates(x) for x in dirnameList]
176 dirnameList = filter(lambda x:x!=None,dirnameList)
176 dirnameList = filter(lambda x:x!=None,dirnameList)
177 if len(dirnameList)>0:
177 if len(dirnameList)>0:
178 self.status = 1
178 self.status = 1
179 self.dirnameList = dirnameList
179 self.dirnameList = dirnameList
180 self.dirnameList.sort()
180 self.dirnameList.sort()
181 else:
181 else:
182 self.status = 0
182 self.status = 0
183 return None
183 return None
184
184
185 def __getTimeFromData(self):
185 def __getTimeFromData(self):
186 startDateTime_Reader = datetime.datetime.combine(self.startDate,self.startTime)
186 startDateTime_Reader = datetime.datetime.combine(self.startDate,self.startTime)
187 endDateTime_Reader = datetime.datetime.combine(self.endDate,self.endTime)
187 endDateTime_Reader = datetime.datetime.combine(self.endDate,self.endTime)
188
188
189 print 'Filtering Files from %s to %s'%(startDateTime_Reader, endDateTime_Reader)
189 print 'Filtering Files from %s to %s'%(startDateTime_Reader, endDateTime_Reader)
190 print '........................................'
190 print '........................................'
191 filter_filenameList = []
191 filter_filenameList = []
192 self.filenameList.sort()
192 self.filenameList.sort()
193 for i in range(len(self.filenameList)-1):
193 for i in range(len(self.filenameList)-1):
194 filename = self.filenameList[i]
194 filename = self.filenameList[i]
195 fp = h5py.File(filename,'r')
195 fp = h5py.File(filename,'r')
196 time_str = fp.get('Time/RadacTimeString')
196 time_str = fp.get('Time/RadacTimeString')
197
197
198 startDateTimeStr_File = time_str[0][0].split('.')[0]
198 startDateTimeStr_File = time_str[0][0].split('.')[0]
199 junk = time.strptime(startDateTimeStr_File, '%Y-%m-%d %H:%M:%S')
199 junk = time.strptime(startDateTimeStr_File, '%Y-%m-%d %H:%M:%S')
200 startDateTime_File = datetime.datetime(junk.tm_year,junk.tm_mon,junk.tm_mday,junk.tm_hour, junk.tm_min, junk.tm_sec)
200 startDateTime_File = datetime.datetime(junk.tm_year,junk.tm_mon,junk.tm_mday,junk.tm_hour, junk.tm_min, junk.tm_sec)
201
201
202 endDateTimeStr_File = time_str[-1][-1].split('.')[0]
202 endDateTimeStr_File = time_str[-1][-1].split('.')[0]
203 junk = time.strptime(endDateTimeStr_File, '%Y-%m-%d %H:%M:%S')
203 junk = time.strptime(endDateTimeStr_File, '%Y-%m-%d %H:%M:%S')
204 endDateTime_File = datetime.datetime(junk.tm_year,junk.tm_mon,junk.tm_mday,junk.tm_hour, junk.tm_min, junk.tm_sec)
204 endDateTime_File = datetime.datetime(junk.tm_year,junk.tm_mon,junk.tm_mday,junk.tm_hour, junk.tm_min, junk.tm_sec)
205
205
206 fp.close()
206 fp.close()
207
207
208 if self.timezone == 'lt':
208 if self.timezone == 'lt':
209 startDateTime_File = startDateTime_File - datetime.timedelta(minutes = 300)
209 startDateTime_File = startDateTime_File - datetime.timedelta(minutes = 300)
210 endDateTime_File = endDateTime_File - datetime.timedelta(minutes = 300)
210 endDateTime_File = endDateTime_File - datetime.timedelta(minutes = 300)
211
211
212 if (endDateTime_File>=startDateTime_Reader and endDateTime_File<endDateTime_Reader):
212 if (endDateTime_File>=startDateTime_Reader and endDateTime_File<endDateTime_Reader):
213 #self.filenameList.remove(filename)
213 #self.filenameList.remove(filename)
214 filter_filenameList.append(filename)
214 filter_filenameList.append(filename)
215
215
216 filter_filenameList.sort()
216 filter_filenameList.sort()
217 self.filenameList = filter_filenameList
217 self.filenameList = filter_filenameList
218 return 1
218 return 1
219
219
220 def __filterByGlob1(self, dirName):
220 def __filterByGlob1(self, dirName):
221 filter_files = glob.glob1(dirName, '*.*%s'%self.extension_file)
221 filter_files = glob.glob1(dirName, '*.*%s'%self.extension_file)
222 filterDict = {}
222 filterDict = {}
223 filterDict.setdefault(dirName)
223 filterDict.setdefault(dirName)
224 filterDict[dirName] = filter_files
224 filterDict[dirName] = filter_files
225 return filterDict
225 return filterDict
226
226
227 def __getFilenameList(self, fileListInKeys, dirList):
227 def __getFilenameList(self, fileListInKeys, dirList):
228 for value in fileListInKeys:
228 for value in fileListInKeys:
229 dirName = value.keys()[0]
229 dirName = value.keys()[0]
230 for file in value[dirName]:
230 for file in value[dirName]:
231 filename = os.path.join(dirName, file)
231 filename = os.path.join(dirName, file)
232 self.filenameList.append(filename)
232 self.filenameList.append(filename)
233
233
234
234
235 def __selectDataForTimes(self, online=False):
235 def __selectDataForTimes(self, online=False):
236 #aun no esta implementado el filtro for tiempo
236 #aun no esta implementado el filtro for tiempo
237 if not(self.status):
237 if not(self.status):
238 return None
238 return None
239
239
240 dirList = [os.path.join(self.path,x) for x in self.dirnameList]
240 dirList = [os.path.join(self.path,x) for x in self.dirnameList]
241
241
242 fileListInKeys = [self.__filterByGlob1(x) for x in dirList]
242 fileListInKeys = [self.__filterByGlob1(x) for x in dirList]
243
243
244 self.__getFilenameList(fileListInKeys, dirList)
244 self.__getFilenameList(fileListInKeys, dirList)
245 if not(online):
245 if not(online):
246 #filtro por tiempo
246 #filtro por tiempo
247 if not(self.all):
247 if not(self.all):
248 self.__getTimeFromData()
248 self.__getTimeFromData()
249
249
250 if len(self.filenameList)>0:
250 if len(self.filenameList)>0:
251 self.status = 1
251 self.status = 1
252 self.filenameList.sort()
252 self.filenameList.sort()
253 else:
253 else:
254 self.status = 0
254 self.status = 0
255 return None
255 return None
256
256
257 else:
257 else:
258 #get the last file - 1
258 #get the last file - 1
259 self.filenameList = [self.filenameList[-2]]
259 self.filenameList = [self.filenameList[-2]]
260
260
261 new_dirnameList = []
261 new_dirnameList = []
262 for dirname in self.dirnameList:
262 for dirname in self.dirnameList:
263 junk = numpy.array([dirname in x for x in self.filenameList])
263 junk = numpy.array([dirname in x for x in self.filenameList])
264 junk_sum = junk.sum()
264 junk_sum = junk.sum()
265 if junk_sum > 0:
265 if junk_sum > 0:
266 new_dirnameList.append(dirname)
266 new_dirnameList.append(dirname)
267 self.dirnameList = new_dirnameList
267 self.dirnameList = new_dirnameList
268 return 1
268 return 1
269
269
270 def __searchFilesOnline(self,
270 def searchFilesOnLine(self,
271 path,
271 path,
272 walk=True):
272 walk=True):
273
273
274 startDate = datetime.datetime.utcnow().date()
274 startDate = datetime.datetime.utcnow().date()
275 endDate = datetime.datetime.utcnow().date()
275 endDate = datetime.datetime.utcnow().date()
276
276
277 self.__setParameters(path=path, startDate=startDate, endDate=endDate, walk=walk)
277 self.__setParameters(path=path, startDate=startDate, endDate=endDate, walk=walk)
278
278
279 self.__checkPath()
279 self.__checkPath()
280
280
281 self.__findDataForDates(online=True)
281 self.__findDataForDates(online=True)
282
282
283 self.dirnameList = [self.dirnameList[-1]]
283 self.dirnameList = [self.dirnameList[-1]]
284
284
285 self.__selectDataForTimes(online=True)
285 self.__selectDataForTimes(online=True)
286
286
287 return
287 return
288
288
289
289
290 def __searchFilesOffline(self,
290 def searchFilesOffLine(self,
291 path,
291 path,
292 startDate,
292 startDate,
293 endDate,
293 endDate,
294 startTime=datetime.time(0,0,0),
294 startTime=datetime.time(0,0,0),
295 endTime=datetime.time(23,59,59),
295 endTime=datetime.time(23,59,59),
296 walk=True):
296 walk=True):
297
297
298 self.__setParameters(path, startDate, endDate, startTime, endTime, walk)
298 self.__setParameters(path, startDate, endDate, startTime, endTime, walk)
299
299
300 self.__checkPath()
300 self.__checkPath()
301
301
302 self.__findDataForDates()
302 self.__findDataForDates()
303
303
304 self.__selectDataForTimes()
304 self.__selectDataForTimes()
305
305
306 for i in range(len(self.filenameList)):
306 for i in range(len(self.filenameList)):
307 print "%s" %(self.filenameList[i])
307 print "%s" %(self.filenameList[i])
308
308
309 return
309 return
310
310
311 def __setNextFileOffline(self):
311 def __setNextFileOffline(self):
312 idFile = self.fileIndex
312 idFile = self.fileIndex
313
313
314 while (True):
314 while (True):
315 idFile += 1
315 idFile += 1
316 if not(idFile < len(self.filenameList)):
316 if not(idFile < len(self.filenameList)):
317 self.flagNoMoreFiles = 1
317 self.flagNoMoreFiles = 1
318 print "No more Files"
318 print "No more Files"
319 return 0
319 return 0
320
320
321 filename = self.filenameList[idFile]
321 filename = self.filenameList[idFile]
322
322
323 amisrFilePointer = h5py.File(filename,'r')
323 amisrFilePointer = h5py.File(filename,'r')
324
324
325 break
325 break
326
326
327 self.flagIsNewFile = 1
327 self.flagIsNewFile = 1
328 self.fileIndex = idFile
328 self.fileIndex = idFile
329 self.filename = filename
329 self.filename = filename
330
330
331 self.amisrFilePointer = amisrFilePointer
331 self.amisrFilePointer = amisrFilePointer
332
332
333 print "Setting the file: %s"%self.filename
333 print "Setting the file: %s"%self.filename
334
334
335 return 1
335 return 1
336
336
337
337
338 def __setNextFileOnline(self):
338 def __setNextFileOnline(self):
339 filename = self.filenameList[0]
339 filename = self.filenameList[0]
340 if self.__filename_online != None:
340 if self.__filename_online != None:
341 self.__selectDataForTimes(online=True)
341 self.__selectDataForTimes(online=True)
342 filename = self.filenameList[0]
342 filename = self.filenameList[0]
343 while self.__filename_online == filename:
343 while self.__filename_online == filename:
344 print 'waiting %d seconds to get a new file...'%(self.__waitForNewFile)
344 print 'waiting %d seconds to get a new file...'%(self.__waitForNewFile)
345 sleep(self.__waitForNewFile)
345 sleep(self.__waitForNewFile)
346 self.__selectDataForTimes(online=True)
346 self.__selectDataForTimes(online=True)
347 filename = self.filenameList[0]
347 filename = self.filenameList[0]
348
348
349 self.__filename_online = filename
349 self.__filename_online = filename
350
350
351 self.amisrFilePointer = h5py.File(filename,'r')
351 self.amisrFilePointer = h5py.File(filename,'r')
352 self.flagIsNewFile = 1
352 self.flagIsNewFile = 1
353 self.filename = filename
353 self.filename = filename
354 print "Setting the file: %s"%self.filename
354 print "Setting the file: %s"%self.filename
355 return 1
355 return 1
356
356
357
357
358 def __readHeader(self):
358 def __readHeader(self):
359 self.radacHeaderObj = RadacHeader(self.amisrFilePointer)
359 self.radacHeaderObj = RadacHeader(self.amisrFilePointer)
360
360
361 #update values from experiment cfg file
361 #update values from experiment cfg file
362 if self.radacHeaderObj.nrecords == self.recordsperfile_fromfile:
362 if self.radacHeaderObj.nrecords == self.recordsperfile_fromfile:
363 self.radacHeaderObj.nrecords = self.recordsperfile_fromfile
363 self.radacHeaderObj.nrecords = self.recordsperfile_fromfile
364 self.radacHeaderObj.nbeams = self.nbeamcodes_fromfile
364 self.radacHeaderObj.nbeams = self.nbeamcodes_fromfile
365 self.radacHeaderObj.npulses = self.npulsesint_fromfile
365 self.radacHeaderObj.npulses = self.npulsesint_fromfile
366 self.radacHeaderObj.nsamples = self.ngates_fromfile
366 self.radacHeaderObj.nsamples = self.ngates_fromfile
367
367
368 #looking index list for data
368 #looking index list for data
369 start_index = self.radacHeaderObj.pulseCount[0,:][0]
369 start_index = self.radacHeaderObj.pulseCount[0,:][0]
370 end_index = self.radacHeaderObj.npulses
370 end_index = self.radacHeaderObj.npulses
371 range4data = range(start_index, end_index)
371 range4data = range(start_index, end_index)
372 self.index4_schain_datablock = numpy.array(range4data)
372 self.index4_schain_datablock = numpy.array(range4data)
373
373
374 buffer_start_index = 0
374 buffer_start_index = 0
375 buffer_end_index = self.radacHeaderObj.pulseCount[0,:][0]
375 buffer_end_index = self.radacHeaderObj.pulseCount[0,:][0]
376 range4buffer = range(buffer_start_index, buffer_end_index)
376 range4buffer = range(buffer_start_index, buffer_end_index)
377 self.index4_buffer = numpy.array(range4buffer)
377 self.index4_buffer = numpy.array(range4buffer)
378
378
379 self.linear_pulseCount = numpy.array(range4data + range4buffer)
379 self.linear_pulseCount = numpy.array(range4data + range4buffer)
380 self.npulseByFrame = max(self.radacHeaderObj.pulseCount[0,:]+1)
380 self.npulseByFrame = max(self.radacHeaderObj.pulseCount[0,:]+1)
381
381
382 #get tuning frequency
382 #get tuning frequency
383 frequency_h5file_dataset = self.amisrFilePointer.get('Rx'+'/TuningFrequency')
383 frequency_h5file_dataset = self.amisrFilePointer.get('Rx'+'/TuningFrequency')
384 self.frequency_h5file = frequency_h5file_dataset[0,0]
384 self.frequency_h5file = frequency_h5file_dataset[0,0]
385
385
386 self.flagIsNewFile = 1
386 self.flagIsNewFile = 1
387
387
388 def __getBeamCode(self):
388 def __getBeamCode(self):
389 self.beamCodeDict = {}
389 self.beamCodeDict = {}
390 self.beamRangeDict = {}
390 self.beamRangeDict = {}
391
391
392 beamCodeMap = self.amisrFilePointer.get('Setup/BeamcodeMap')
392 beamCodeMap = self.amisrFilePointer.get('Setup/BeamcodeMap')
393
393
394 for i in range(len(self.radacHeaderObj.beamCode[0,:])):
394 for i in range(len(self.radacHeaderObj.beamCode[0,:])):
395 self.beamCodeDict.setdefault(i)
395 self.beamCodeDict.setdefault(i)
396 self.beamRangeDict.setdefault(i)
396 self.beamRangeDict.setdefault(i)
397 beamcodeValue = self.radacHeaderObj.beamCode[0,i]
397 beamcodeValue = self.radacHeaderObj.beamCode[0,i]
398 beamcodeIndex = numpy.where(beamCodeMap[:,0] == beamcodeValue)[0][0]
398 beamcodeIndex = numpy.where(beamCodeMap[:,0] == beamcodeValue)[0][0]
399 x = beamCodeMap[beamcodeIndex][1]
399 x = beamCodeMap[beamcodeIndex][1]
400 y = beamCodeMap[beamcodeIndex][2]
400 y = beamCodeMap[beamcodeIndex][2]
401 z = beamCodeMap[beamcodeIndex][3]
401 z = beamCodeMap[beamcodeIndex][3]
402 self.beamCodeDict[i] = [beamcodeValue, x, y, z]
402 self.beamCodeDict[i] = [beamcodeValue, x, y, z]
403
403
404 just4record0 = self.radacHeaderObj.beamCodeByPulse[0,:]
404 just4record0 = self.radacHeaderObj.beamCodeByPulse[0,:]
405
405
406 for i in range(len(self.beamCodeDict.values())):
406 for i in range(len(self.beamCodeDict.values())):
407 xx = numpy.where(just4record0==self.beamCodeDict.values()[i][0])
407 xx = numpy.where(just4record0==self.beamCodeDict.values()[i][0])
408 indexPulseByBeam = self.linear_pulseCount[xx[0]]
408 indexPulseByBeam = self.linear_pulseCount[xx[0]]
409 self.beamRangeDict[i] = indexPulseByBeam
409 self.beamRangeDict[i] = indexPulseByBeam
410
410
411 def __getExpParameters(self):
411 def __getExpParameters(self):
412 if not(self.status):
412 if not(self.status):
413 return None
413 return None
414
414
415 experimentCfgPath = os.path.join(self.path, self.dirnameList[0], 'Setup')
415 experimentCfgPath = os.path.join(self.path, self.dirnameList[0], 'Setup')
416
416
417 expFinder = glob.glob1(experimentCfgPath,'*.exp')
417 expFinder = glob.glob1(experimentCfgPath,'*.exp')
418 if len(expFinder)== 0:
418 if len(expFinder)== 0:
419 self.status = 0
419 self.status = 0
420 return None
420 return None
421
421
422 experimentFilename = os.path.join(experimentCfgPath,expFinder[0])
422 experimentFilename = os.path.join(experimentCfgPath,expFinder[0])
423
423
424 f = open(experimentFilename)
424 f = open(experimentFilename)
425 lines = f.readlines()
425 lines = f.readlines()
426 f.close()
426 f.close()
427
427
428 parmsList = ['npulsesint*','recordsperfile*','nbeamcodes*','ngates*']
428 parmsList = ['npulsesint*','recordsperfile*','nbeamcodes*','ngates*']
429 filterList = [fnmatch.filter(lines, x) for x in parmsList]
429 filterList = [fnmatch.filter(lines, x) for x in parmsList]
430
430
431
431
432 values = [re.sub(r'\D',"",x[0]) for x in filterList]
432 values = [re.sub(r'\D',"",x[0]) for x in filterList]
433
433
434 self.npulsesint_fromfile = int(values[0])
434 self.npulsesint_fromfile = int(values[0])
435 self.recordsperfile_fromfile = int(values[1])
435 self.recordsperfile_fromfile = int(values[1])
436 self.nbeamcodes_fromfile = int(values[2])
436 self.nbeamcodes_fromfile = int(values[2])
437 self.ngates_fromfile = int(values[3])
437 self.ngates_fromfile = int(values[3])
438
438
439 tufileFinder = fnmatch.filter(lines, 'tufile=*')
439 tufileFinder = fnmatch.filter(lines, 'tufile=*')
440 tufile = tufileFinder[0].split('=')[1].split('\n')[0]
440 tufile = tufileFinder[0].split('=')[1].split('\n')[0]
441 tufile = tufile.split('\r')[0]
441 tufile = tufile.split('\r')[0]
442 tufilename = os.path.join(experimentCfgPath,tufile)
442 tufilename = os.path.join(experimentCfgPath,tufile)
443
443
444 f = open(tufilename)
444 f = open(tufilename)
445 lines = f.readlines()
445 lines = f.readlines()
446 f.close()
446 f.close()
447 self.ippSeconds_fromfile = float(lines[1].split()[2])/1E6
447 self.ippSeconds_fromfile = float(lines[1].split()[2])/1E6
448
448
449
449
450 self.status = 1
450 self.status = 1
451
451
452 def __setIdsAndArrays(self):
452 def __setIdsAndArrays(self):
453 self.dataByFrame = self.__setDataByFrame()
453 self.dataByFrame = self.__setDataByFrame()
454 self.beamCodeByFrame = self.amisrFilePointer.get('Raw11/Data/RadacHeader/BeamCode').value[0, :]
454 self.beamCodeByFrame = self.amisrFilePointer.get('Raw11/Data/RadacHeader/BeamCode').value[0, :]
455 self.readRanges()
455 self.readRanges()
456 self.index_amisr_sample, self.index_amisr_buffer = self.radacHeaderObj.getIndexRangeToPulse(0)
456 self.index_amisr_sample, self.index_amisr_buffer = self.radacHeaderObj.getIndexRangeToPulse(0)
457 self.radacTimeByFrame = numpy.zeros(self.radacHeaderObj.npulses)
457 self.radacTimeByFrame = numpy.zeros(self.radacHeaderObj.npulses)
458 if len(self.index_amisr_buffer) > 0:
458 if len(self.index_amisr_buffer) > 0:
459 self.buffer_radactime = numpy.zeros_like(self.radacTimeByFrame)
459 self.buffer_radactime = numpy.zeros_like(self.radacTimeByFrame)
460
460
461
461
462 def __setNextFile(self,online=False):
462 def __setNextFile(self,online=False):
463
463
464 if not(online):
464 if not(online):
465 newFile = self.__setNextFileOffline()
465 newFile = self.__setNextFileOffline()
466 else:
466 else:
467 newFile = self.__setNextFileOnline()
467 newFile = self.__setNextFileOnline()
468
468
469 if not(newFile):
469 if not(newFile):
470 return 0
470 return 0
471
471
472 self.__readHeader()
472 self.__readHeader()
473
473
474 if self.__firstFile:
474 if self.__firstFile:
475 self.__setIdsAndArrays()
475 self.__setIdsAndArrays()
476 self.__firstFile = False
476 self.__firstFile = False
477
477
478 self.__getBeamCode()
478 self.__getBeamCode()
479 self.readDataBlock()
479 self.readDataBlock()
480
480
481
481
482 def setup(self,path=None,
482 def setup(self,path=None,
483 startDate=None,
483 startDate=None,
484 endDate=None,
484 endDate=None,
485 startTime=datetime.time(0,0,0),
485 startTime=datetime.time(0,0,0),
486 endTime=datetime.time(23,59,59),
486 endTime=datetime.time(23,59,59),
487 walk=True,
487 walk=True,
488 timezone='ut',
488 timezone='ut',
489 all=0,
489 all=0,
490 online=False):
490 online=False):
491
491
492 self.timezone = timezone
492 self.timezone = timezone
493 self.all = all
493 self.all = all
494 self.online = online
494 self.online = online
495 if not(online):
495 if not(online):
496 #Busqueda de archivos offline
496 #Busqueda de archivos offline
497 self.__searchFilesOffline(path, startDate, endDate, startTime, endTime, walk)
497 self.searchFilesOffLine(path, startDate, endDate, startTime, endTime, walk)
498 else:
498 else:
499 self.__searchFilesOnline(path, walk)
499 self.searchFilesOnLine(path, walk)
500
500
501 if not(self.filenameList):
501 if not(self.filenameList):
502 print "There is no files into the folder: %s"%(path)
502 print "There is no files into the folder: %s"%(path)
503
503
504 sys.exit(-1)
504 sys.exit(-1)
505
505
506 self.__getExpParameters()
506 self.__getExpParameters()
507
507
508 self.fileIndex = -1
508 self.fileIndex = -1
509
509
510 self.__setNextFile(online)
510 self.__setNextFile(online)
511
511
512 # first_beamcode = self.radacHeaderObj.beamCodeByPulse[0,0]
512 # first_beamcode = self.radacHeaderObj.beamCodeByPulse[0,0]
513 # index = numpy.where(self.radacHeaderObj.beamCodeByPulse[0,:]!=first_beamcode)[0][0]
513 # index = numpy.where(self.radacHeaderObj.beamCodeByPulse[0,:]!=first_beamcode)[0][0]
514 self.profileIndex_offset = self.radacHeaderObj.pulseCount[0,:][0]
514 self.profileIndex_offset = self.radacHeaderObj.pulseCount[0,:][0]
515 self.profileIndex = self.profileIndex_offset
515 self.profileIndex = self.profileIndex_offset
516
516
517 def readRanges(self):
517 def readRanges(self):
518 dataset = self.amisrFilePointer.get('Raw11/Data/Samples/Range')
518 dataset = self.amisrFilePointer.get('Raw11/Data/Samples/Range')
519
519
520 self.rangeFromFile = numpy.reshape(dataset.value,(-1))
520 self.rangeFromFile = numpy.reshape(dataset.value,(-1))
521 return self.rangeFromFile
521 return self.rangeFromFile
522
522
523
523
524 def readRadacTime(self,idrecord, range1, range2):
524 def readRadacTime(self,idrecord, range1, range2):
525 self.radacTimeFromFile = self.radacHeaderObj.radacTime.value
525 self.radacTimeFromFile = self.radacHeaderObj.radacTime.value
526
526
527 radacTimeByFrame = numpy.zeros((self.radacHeaderObj.npulses))
527 radacTimeByFrame = numpy.zeros((self.radacHeaderObj.npulses))
528 #radacTimeByFrame = dataset[idrecord - 1,range1]
528 #radacTimeByFrame = dataset[idrecord - 1,range1]
529 #radacTimeByFrame = dataset[idrecord,range2]
529 #radacTimeByFrame = dataset[idrecord,range2]
530
530
531 return radacTimeByFrame
531 return radacTimeByFrame
532
532
533 def readBeamCode(self, idrecord, range1, range2):
533 def readBeamCode(self, idrecord, range1, range2):
534 dataset = self.amisrFilePointer.get('Raw11/Data/RadacHeader/BeamCode')
534 dataset = self.amisrFilePointer.get('Raw11/Data/RadacHeader/BeamCode')
535 beamcodeByFrame = numpy.zeros((self.radacHeaderObj.npulses))
535 beamcodeByFrame = numpy.zeros((self.radacHeaderObj.npulses))
536 self.beamCodesFromFile = dataset.value
536 self.beamCodesFromFile = dataset.value
537
537
538 #beamcodeByFrame[range1] = dataset[idrecord - 1, range1]
538 #beamcodeByFrame[range1] = dataset[idrecord - 1, range1]
539 #beamcodeByFrame[range2] = dataset[idrecord, range2]
539 #beamcodeByFrame[range2] = dataset[idrecord, range2]
540 beamcodeByFrame[range1] = dataset[idrecord, range1]
540 beamcodeByFrame[range1] = dataset[idrecord, range1]
541 beamcodeByFrame[range2] = dataset[idrecord, range2]
541 beamcodeByFrame[range2] = dataset[idrecord, range2]
542
542
543 return beamcodeByFrame
543 return beamcodeByFrame
544
544
545
545
546 def __setDataByFrame(self):
546 def __setDataByFrame(self):
547 ndata = 2 # porque es complejo
547 ndata = 2 # porque es complejo
548 dataByFrame = numpy.zeros((self.radacHeaderObj.npulses, self.radacHeaderObj.nsamples, ndata))
548 dataByFrame = numpy.zeros((self.radacHeaderObj.npulses, self.radacHeaderObj.nsamples, ndata))
549 return dataByFrame
549 return dataByFrame
550
550
551 def __readDataSet(self):
551 def __readDataSet(self):
552 dataset = self.amisrFilePointer.get('Raw11/Data/Samples/Data')
552 dataset = self.amisrFilePointer.get('Raw11/Data/Samples/Data')
553 return dataset
553 return dataset
554
554
555 def __setDataBlock(self,):
555 def __setDataBlock(self,):
556 real = self.dataByFrame[:,:,0] #asumo que 0 es real
556 real = self.dataByFrame[:,:,0] #asumo que 0 es real
557 imag = self.dataByFrame[:,:,1] #asumo que 1 es imaginario
557 imag = self.dataByFrame[:,:,1] #asumo que 1 es imaginario
558 datablock = real + imag*1j #armo el complejo
558 datablock = real + imag*1j #armo el complejo
559 return datablock
559 return datablock
560
560
561 def readSamples_version1(self,idrecord):
561 def readSamples_version1(self,idrecord):
562 #estas tres primeras lineas solo se deben ejecutar una vez
562 #estas tres primeras lineas solo se deben ejecutar una vez
563 if self.flagIsNewFile:
563 if self.flagIsNewFile:
564 #reading dataset
564 #reading dataset
565 self.dataset = self.__readDataSet()
565 self.dataset = self.__readDataSet()
566 self.flagIsNewFile = 0
566 self.flagIsNewFile = 0
567
567
568 if idrecord == 0:
568 if idrecord == 0:
569 self.dataByFrame[self.index4_schain_datablock, : ,:] = self.dataset[0, self.index_amisr_sample,:,:]
569 self.dataByFrame[self.index4_schain_datablock, : ,:] = self.dataset[0, self.index_amisr_sample,:,:]
570 self.radacTimeByFrame[self.index4_schain_datablock] = self.radacHeaderObj.radacTime[0, self.index_amisr_sample]
570 self.radacTimeByFrame[self.index4_schain_datablock] = self.radacHeaderObj.radacTime[0, self.index_amisr_sample]
571 datablock = self.__setDataBlock()
571 datablock = self.__setDataBlock()
572 if len(self.index_amisr_buffer) > 0:
572 if len(self.index_amisr_buffer) > 0:
573 self.buffer = self.dataset[0, self.index_amisr_buffer,:,:]
573 self.buffer = self.dataset[0, self.index_amisr_buffer,:,:]
574 self.buffer_radactime = self.radacHeaderObj.radacTime[0, self.index_amisr_buffer]
574 self.buffer_radactime = self.radacHeaderObj.radacTime[0, self.index_amisr_buffer]
575
575
576 return datablock
576 return datablock
577 if len(self.index_amisr_buffer) > 0:
577 if len(self.index_amisr_buffer) > 0:
578 self.dataByFrame[self.index4_buffer,:,:] = self.buffer.copy()
578 self.dataByFrame[self.index4_buffer,:,:] = self.buffer.copy()
579 self.radacTimeByFrame[self.index4_buffer] = self.buffer_radactime.copy()
579 self.radacTimeByFrame[self.index4_buffer] = self.buffer_radactime.copy()
580 self.dataByFrame[self.index4_schain_datablock,:,:] = self.dataset[idrecord, self.index_amisr_sample,:,:]
580 self.dataByFrame[self.index4_schain_datablock,:,:] = self.dataset[idrecord, self.index_amisr_sample,:,:]
581 self.radacTimeByFrame[self.index4_schain_datablock] = self.radacHeaderObj.radacTime[idrecord, self.index_amisr_sample]
581 self.radacTimeByFrame[self.index4_schain_datablock] = self.radacHeaderObj.radacTime[idrecord, self.index_amisr_sample]
582 datablock = self.__setDataBlock()
582 datablock = self.__setDataBlock()
583 if len(self.index_amisr_buffer) > 0:
583 if len(self.index_amisr_buffer) > 0:
584 self.buffer = self.dataset[idrecord, self.index_amisr_buffer, :, :]
584 self.buffer = self.dataset[idrecord, self.index_amisr_buffer, :, :]
585 self.buffer_radactime = self.radacHeaderObj.radacTime[idrecord, self.index_amisr_buffer]
585 self.buffer_radactime = self.radacHeaderObj.radacTime[idrecord, self.index_amisr_buffer]
586
586
587 return datablock
587 return datablock
588
588
589
589
590 def readSamples(self,idrecord):
590 def readSamples(self,idrecord):
591 if self.flagIsNewFile:
591 if self.flagIsNewFile:
592 self.dataByFrame = self.__setDataByFrame()
592 self.dataByFrame = self.__setDataByFrame()
593 self.beamCodeByFrame = self.amisrFilePointer.get('Raw11/Data/RadacHeader/BeamCode').value[idrecord, :]
593 self.beamCodeByFrame = self.amisrFilePointer.get('Raw11/Data/RadacHeader/BeamCode').value[idrecord, :]
594
594
595 #reading ranges
595 #reading ranges
596 self.readRanges()
596 self.readRanges()
597 #reading dataset
597 #reading dataset
598 self.dataset = self.__readDataSet()
598 self.dataset = self.__readDataSet()
599
599
600 self.flagIsNewFile = 0
600 self.flagIsNewFile = 0
601 self.radacTimeByFrame = self.radacHeaderObj.radacTime.value[idrecord, :]
601 self.radacTimeByFrame = self.radacHeaderObj.radacTime.value[idrecord, :]
602 self.dataByFrame = self.dataset[idrecord, :, :, :]
602 self.dataByFrame = self.dataset[idrecord, :, :, :]
603 datablock = self.__setDataBlock()
603 datablock = self.__setDataBlock()
604 return datablock
604 return datablock
605
605
606
606
607 def readDataBlock(self):
607 def readDataBlock(self):
608
608
609 self.datablock = self.readSamples_version1(self.idrecord_count)
609 self.datablock = self.readSamples_version1(self.idrecord_count)
610 #self.datablock = self.readSamples(self.idrecord_count)
610 #self.datablock = self.readSamples(self.idrecord_count)
611 #print 'record:', self.idrecord_count
611 #print 'record:', self.idrecord_count
612
612
613 self.idrecord_count += 1
613 self.idrecord_count += 1
614 self.profileIndex = 0
614 self.profileIndex = 0
615
615
616 if self.idrecord_count >= self.radacHeaderObj.nrecords:
616 if self.idrecord_count >= self.radacHeaderObj.nrecords:
617 self.idrecord_count = 0
617 self.idrecord_count = 0
618 self.flagIsNewFile = 1
618 self.flagIsNewFile = 1
619
619
620 def readNextBlock(self):
620 def readNextBlock(self):
621
621
622 self.readDataBlock()
622 self.readDataBlock()
623
623
624 if self.flagIsNewFile:
624 if self.flagIsNewFile:
625 self.__setNextFile(self.online)
625 self.__setNextFile(self.online)
626 pass
626 pass
627
627
628 def __hasNotDataInBuffer(self):
628 def __hasNotDataInBuffer(self):
629 #self.radacHeaderObj.npulses debe ser otra variable para considerar el numero de pulsos a tomar en el primer y ultimo record
629 #self.radacHeaderObj.npulses debe ser otra variable para considerar el numero de pulsos a tomar en el primer y ultimo record
630 if self.profileIndex >= self.radacHeaderObj.npulses:
630 if self.profileIndex >= self.radacHeaderObj.npulses:
631 return 1
631 return 1
632 return 0
632 return 0
633
633
634 def printUTC(self):
634 def printUTC(self):
635 print self.dataOut.utctime
635 print self.dataOut.utctime
636 print ''
636 print ''
637
637
638 def setObjProperties(self):
638 def setObjProperties(self):
639
639
640 self.dataOut.heightList = self.rangeFromFile/1000.0 #km
640 self.dataOut.heightList = self.rangeFromFile/1000.0 #km
641 self.dataOut.nProfiles = self.radacHeaderObj.npulses
641 self.dataOut.nProfiles = self.radacHeaderObj.npulses
642 self.dataOut.nRecords = self.radacHeaderObj.nrecords
642 self.dataOut.nRecords = self.radacHeaderObj.nrecords
643 self.dataOut.nBeams = self.radacHeaderObj.nbeams
643 self.dataOut.nBeams = self.radacHeaderObj.nbeams
644 self.dataOut.ippSeconds = self.ippSeconds_fromfile
644 self.dataOut.ippSeconds = self.ippSeconds_fromfile
645 # self.dataOut.timeInterval = self.dataOut.ippSeconds * self.dataOut.nCohInt
645 # self.dataOut.timeInterval = self.dataOut.ippSeconds * self.dataOut.nCohInt
646 self.dataOut.frequency = self.frequency_h5file
646 self.dataOut.frequency = self.frequency_h5file
647 self.dataOut.npulseByFrame = self.npulseByFrame
647 self.dataOut.npulseByFrame = self.npulseByFrame
648 self.dataOut.nBaud = None
648 self.dataOut.nBaud = None
649 self.dataOut.nCode = None
649 self.dataOut.nCode = None
650 self.dataOut.code = None
650 self.dataOut.code = None
651
651
652 self.dataOut.beamCodeDict = self.beamCodeDict
652 self.dataOut.beamCodeDict = self.beamCodeDict
653 self.dataOut.beamRangeDict = self.beamRangeDict
653 self.dataOut.beamRangeDict = self.beamRangeDict
654
654
655 if self.timezone == 'lt':
655 if self.timezone == 'lt':
656 self.dataOut.timeZone = time.timezone / 60. #get the timezone in minutes
656 self.dataOut.timeZone = time.timezone / 60. #get the timezone in minutes
657 else:
657 else:
658 self.dataOut.timeZone = 0 #by default time is UTC
658 self.dataOut.timeZone = 0 #by default time is UTC
659
659
660 def getData(self):
660 def getData(self):
661
661
662 if self.flagNoMoreFiles:
662 if self.flagNoMoreFiles:
663 self.dataOut.flagNoData = True
663 self.dataOut.flagNoData = True
664 print 'Process finished'
664 print 'Process finished'
665 return 0
665 return 0
666
666
667 if self.__hasNotDataInBuffer():
667 if self.__hasNotDataInBuffer():
668 self.readNextBlock()
668 self.readNextBlock()
669
669
670
670
671 if self.datablock is None: # setear esta condicion cuando no hayan datos por leers
671 if self.datablock is None: # setear esta condicion cuando no hayan datos por leers
672 self.dataOut.flagNoData = True
672 self.dataOut.flagNoData = True
673 return 0
673 return 0
674
674
675 self.dataOut.data = numpy.reshape(self.datablock[self.profileIndex,:],(1,-1))
675 self.dataOut.data = numpy.reshape(self.datablock[self.profileIndex,:],(1,-1))
676
676
677 self.dataOut.utctime = self.radacTimeByFrame[self.profileIndex]
677 self.dataOut.utctime = self.radacTimeByFrame[self.profileIndex]
678 self.dataOut.profileIndex = self.profileIndex
678 self.dataOut.profileIndex = self.profileIndex
679 self.dataOut.flagNoData = False
679 self.dataOut.flagNoData = False
680
680
681 self.profileIndex += 1
681 self.profileIndex += 1
682
682
683 return self.dataOut.data
683 return self.dataOut.data
684
684
685
685
686 def run(self, **kwargs):
686 def run(self, **kwargs):
687 if not(self.isConfig):
687 if not(self.isConfig):
688 self.setup(**kwargs)
688 self.setup(**kwargs)
689 self.setObjProperties()
689 self.setObjProperties()
690 self.isConfig = True
690 self.isConfig = True
691
691
692 self.getData()
692 self.getData()
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1 '''
1 '''
2 Created on Jul 2, 2014
2 Created on Jul 2, 2014
3
3
4 @author: roj-idl71
4 @author: roj-idl71
5 '''
5 '''
6 import os
6 import os
7 import sys
7 import sys
8 import glob
8 import glob
9 import time
9 import time
10 import numpy
10 import numpy
11 import fnmatch
11 import fnmatch
12 import inspect
12 import inspect
13 import time, datetime
13 import time, datetime
14 import traceback
14 import traceback
15 import zmq
15 import zmq
16
16
17 try:
17 try:
18 from gevent import sleep
18 from gevent import sleep
19 except:
19 except:
20 from time import sleep
20 from time import sleep
21
21
22 from schainpy.model.data.jroheaderIO import PROCFLAG, BasicHeader, SystemHeader, RadarControllerHeader, ProcessingHeader
22 from schainpy.model.data.jroheaderIO import PROCFLAG, BasicHeader, SystemHeader, RadarControllerHeader, ProcessingHeader
23 from schainpy.model.data.jroheaderIO import get_dtype_index, get_numpy_dtype, get_procflag_dtype, get_dtype_width
23 from schainpy.model.data.jroheaderIO import get_dtype_index, get_numpy_dtype, get_procflag_dtype, get_dtype_width
24
24
25 LOCALTIME = True
25 LOCALTIME = True
26
26
27 def isNumber(cad):
27 def isNumber(cad):
28 """
28 """
29 Chequea si el conjunto de caracteres que componen un string puede ser convertidos a un numero.
29 Chequea si el conjunto de caracteres que componen un string puede ser convertidos a un numero.
30
30
31 Excepciones:
31 Excepciones:
32 Si un determinado string no puede ser convertido a numero
32 Si un determinado string no puede ser convertido a numero
33 Input:
33 Input:
34 str, string al cual se le analiza para determinar si convertible a un numero o no
34 str, string al cual se le analiza para determinar si convertible a un numero o no
35
35
36 Return:
36 Return:
37 True : si el string es uno numerico
37 True : si el string es uno numerico
38 False : no es un string numerico
38 False : no es un string numerico
39 """
39 """
40 try:
40 try:
41 float( cad )
41 float( cad )
42 return True
42 return True
43 except:
43 except:
44 return False
44 return False
45
45
46 def isFileInEpoch(filename, startUTSeconds, endUTSeconds):
46 def isFileInEpoch(filename, startUTSeconds, endUTSeconds):
47 """
47 """
48 Esta funcion determina si un archivo de datos se encuentra o no dentro del rango de fecha especificado.
48 Esta funcion determina si un archivo de datos se encuentra o no dentro del rango de fecha especificado.
49
49
50 Inputs:
50 Inputs:
51 filename : nombre completo del archivo de datos en formato Jicamarca (.r)
51 filename : nombre completo del archivo de datos en formato Jicamarca (.r)
52
52
53 startUTSeconds : fecha inicial del rango seleccionado. La fecha esta dada en
53 startUTSeconds : fecha inicial del rango seleccionado. La fecha esta dada en
54 segundos contados desde 01/01/1970.
54 segundos contados desde 01/01/1970.
55 endUTSeconds : fecha final del rango seleccionado. La fecha esta dada en
55 endUTSeconds : fecha final del rango seleccionado. La fecha esta dada en
56 segundos contados desde 01/01/1970.
56 segundos contados desde 01/01/1970.
57
57
58 Return:
58 Return:
59 Boolean : Retorna True si el archivo de datos contiene datos en el rango de
59 Boolean : Retorna True si el archivo de datos contiene datos en el rango de
60 fecha especificado, de lo contrario retorna False.
60 fecha especificado, de lo contrario retorna False.
61
61
62 Excepciones:
62 Excepciones:
63 Si el archivo no existe o no puede ser abierto
63 Si el archivo no existe o no puede ser abierto
64 Si la cabecera no puede ser leida.
64 Si la cabecera no puede ser leida.
65
65
66 """
66 """
67 basicHeaderObj = BasicHeader(LOCALTIME)
67 basicHeaderObj = BasicHeader(LOCALTIME)
68
68
69 try:
69 try:
70 fp = open(filename,'rb')
70 fp = open(filename,'rb')
71 except IOError:
71 except IOError:
72 print "The file %s can't be opened" %(filename)
72 print "The file %s can't be opened" %(filename)
73 return 0
73 return 0
74
74
75 sts = basicHeaderObj.read(fp)
75 sts = basicHeaderObj.read(fp)
76 fp.close()
76 fp.close()
77
77
78 if not(sts):
78 if not(sts):
79 print "Skipping the file %s because it has not a valid header" %(filename)
79 print "Skipping the file %s because it has not a valid header" %(filename)
80 return 0
80 return 0
81
81
82 if not ((startUTSeconds <= basicHeaderObj.utc) and (endUTSeconds > basicHeaderObj.utc)):
82 if not ((startUTSeconds <= basicHeaderObj.utc) and (endUTSeconds > basicHeaderObj.utc)):
83 return 0
83 return 0
84
84
85 return 1
85 return 1
86
86
87 def isTimeInRange(thisTime, startTime, endTime):
87 def isTimeInRange(thisTime, startTime, endTime):
88
88
89 if endTime >= startTime:
89 if endTime >= startTime:
90 if (thisTime < startTime) or (thisTime > endTime):
90 if (thisTime < startTime) or (thisTime > endTime):
91 return 0
91 return 0
92
92
93 return 1
93 return 1
94 else:
94 else:
95 if (thisTime < startTime) and (thisTime > endTime):
95 if (thisTime < startTime) and (thisTime > endTime):
96 return 0
96 return 0
97
97
98 return 1
98 return 1
99
99
100 def isFileInTimeRange(filename, startDate, endDate, startTime, endTime):
100 def isFileInTimeRange(filename, startDate, endDate, startTime, endTime):
101 """
101 """
102 Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado.
102 Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado.
103
103
104 Inputs:
104 Inputs:
105 filename : nombre completo del archivo de datos en formato Jicamarca (.r)
105 filename : nombre completo del archivo de datos en formato Jicamarca (.r)
106
106
107 startDate : fecha inicial del rango seleccionado en formato datetime.date
107 startDate : fecha inicial del rango seleccionado en formato datetime.date
108
108
109 endDate : fecha final del rango seleccionado en formato datetime.date
109 endDate : fecha final del rango seleccionado en formato datetime.date
110
110
111 startTime : tiempo inicial del rango seleccionado en formato datetime.time
111 startTime : tiempo inicial del rango seleccionado en formato datetime.time
112
112
113 endTime : tiempo final del rango seleccionado en formato datetime.time
113 endTime : tiempo final del rango seleccionado en formato datetime.time
114
114
115 Return:
115 Return:
116 Boolean : Retorna True si el archivo de datos contiene datos en el rango de
116 Boolean : Retorna True si el archivo de datos contiene datos en el rango de
117 fecha especificado, de lo contrario retorna False.
117 fecha especificado, de lo contrario retorna False.
118
118
119 Excepciones:
119 Excepciones:
120 Si el archivo no existe o no puede ser abierto
120 Si el archivo no existe o no puede ser abierto
121 Si la cabecera no puede ser leida.
121 Si la cabecera no puede ser leida.
122
122
123 """
123 """
124
124
125
125
126 try:
126 try:
127 fp = open(filename,'rb')
127 fp = open(filename,'rb')
128 except IOError:
128 except IOError:
129 print "The file %s can't be opened" %(filename)
129 print "The file %s can't be opened" %(filename)
130 return None
130 return None
131
131
132 firstBasicHeaderObj = BasicHeader(LOCALTIME)
132 firstBasicHeaderObj = BasicHeader(LOCALTIME)
133 systemHeaderObj = SystemHeader()
133 systemHeaderObj = SystemHeader()
134 radarControllerHeaderObj = RadarControllerHeader()
134 radarControllerHeaderObj = RadarControllerHeader()
135 processingHeaderObj = ProcessingHeader()
135 processingHeaderObj = ProcessingHeader()
136
136
137 lastBasicHeaderObj = BasicHeader(LOCALTIME)
137 lastBasicHeaderObj = BasicHeader(LOCALTIME)
138
138
139 sts = firstBasicHeaderObj.read(fp)
139 sts = firstBasicHeaderObj.read(fp)
140
140
141 if not(sts):
141 if not(sts):
142 print "[Reading] Skipping the file %s because it has not a valid header" %(filename)
142 print "[Reading] Skipping the file %s because it has not a valid header" %(filename)
143 return None
143 return None
144
144
145 if not systemHeaderObj.read(fp):
145 if not systemHeaderObj.read(fp):
146 return None
146 return None
147
147
148 if not radarControllerHeaderObj.read(fp):
148 if not radarControllerHeaderObj.read(fp):
149 return None
149 return None
150
150
151 if not processingHeaderObj.read(fp):
151 if not processingHeaderObj.read(fp):
152 return None
152 return None
153
153
154 filesize = os.path.getsize(filename)
154 filesize = os.path.getsize(filename)
155
155
156 offset = processingHeaderObj.blockSize + 24 #header size
156 offset = processingHeaderObj.blockSize + 24 #header size
157
157
158 if filesize <= offset:
158 if filesize <= offset:
159 print "[Reading] %s: This file has not enough data" %filename
159 print "[Reading] %s: This file has not enough data" %filename
160 return None
160 return None
161
161
162 fp.seek(-offset, 2)
162 fp.seek(-offset, 2)
163
163
164 sts = lastBasicHeaderObj.read(fp)
164 sts = lastBasicHeaderObj.read(fp)
165
165
166 fp.close()
166 fp.close()
167
167
168 thisDatetime = lastBasicHeaderObj.datatime
168 thisDatetime = lastBasicHeaderObj.datatime
169 thisTime_last_block = thisDatetime.time()
169 thisTime_last_block = thisDatetime.time()
170
170
171 thisDatetime = firstBasicHeaderObj.datatime
171 thisDatetime = firstBasicHeaderObj.datatime
172 thisDate = thisDatetime.date()
172 thisDate = thisDatetime.date()
173 thisTime_first_block = thisDatetime.time()
173 thisTime_first_block = thisDatetime.time()
174
174
175 #General case
175 #General case
176 # o>>>>>>>>>>>>>><<<<<<<<<<<<<<o
176 # o>>>>>>>>>>>>>><<<<<<<<<<<<<<o
177 #-----------o----------------------------o-----------
177 #-----------o----------------------------o-----------
178 # startTime endTime
178 # startTime endTime
179
179
180 if endTime >= startTime:
180 if endTime >= startTime:
181 if (thisTime_last_block < startTime) or (thisTime_first_block > endTime):
181 if (thisTime_last_block < startTime) or (thisTime_first_block > endTime):
182 return None
182 return None
183
183
184 return thisDatetime
184 return thisDatetime
185
185
186 #If endTime < startTime then endTime belongs to the next day
186 #If endTime < startTime then endTime belongs to the next day
187
187
188
188
189 #<<<<<<<<<<<o o>>>>>>>>>>>
189 #<<<<<<<<<<<o o>>>>>>>>>>>
190 #-----------o----------------------------o-----------
190 #-----------o----------------------------o-----------
191 # endTime startTime
191 # endTime startTime
192
192
193 if (thisDate == startDate) and (thisTime_last_block < startTime):
193 if (thisDate == startDate) and (thisTime_last_block < startTime):
194 return None
194 return None
195
195
196 if (thisDate == endDate) and (thisTime_first_block > endTime):
196 if (thisDate == endDate) and (thisTime_first_block > endTime):
197 return None
197 return None
198
198
199 if (thisTime_last_block < startTime) and (thisTime_first_block > endTime):
199 if (thisTime_last_block < startTime) and (thisTime_first_block > endTime):
200 return None
200 return None
201
201
202 return thisDatetime
202 return thisDatetime
203
203
204 def isFolderInDateRange(folder, startDate=None, endDate=None):
204 def isFolderInDateRange(folder, startDate=None, endDate=None):
205 """
205 """
206 Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado.
206 Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado.
207
207
208 Inputs:
208 Inputs:
209 folder : nombre completo del directorio.
209 folder : nombre completo del directorio.
210 Su formato deberia ser "/path_root/?YYYYDDD"
210 Su formato deberia ser "/path_root/?YYYYDDD"
211
211
212 siendo:
212 siendo:
213 YYYY : Anio (ejemplo 2015)
213 YYYY : Anio (ejemplo 2015)
214 DDD : Dia del anio (ejemplo 305)
214 DDD : Dia del anio (ejemplo 305)
215
215
216 startDate : fecha inicial del rango seleccionado en formato datetime.date
216 startDate : fecha inicial del rango seleccionado en formato datetime.date
217
217
218 endDate : fecha final del rango seleccionado en formato datetime.date
218 endDate : fecha final del rango seleccionado en formato datetime.date
219
219
220 Return:
220 Return:
221 Boolean : Retorna True si el archivo de datos contiene datos en el rango de
221 Boolean : Retorna True si el archivo de datos contiene datos en el rango de
222 fecha especificado, de lo contrario retorna False.
222 fecha especificado, de lo contrario retorna False.
223 Excepciones:
223 Excepciones:
224 Si el directorio no tiene el formato adecuado
224 Si el directorio no tiene el formato adecuado
225 """
225 """
226
226
227 basename = os.path.basename(folder)
227 basename = os.path.basename(folder)
228
228
229 if not isRadarFolder(basename):
229 if not isRadarFolder(basename):
230 print "The folder %s has not the rigth format" %folder
230 print "The folder %s has not the rigth format" %folder
231 return 0
231 return 0
232
232
233 if startDate and endDate:
233 if startDate and endDate:
234 thisDate = getDateFromRadarFolder(basename)
234 thisDate = getDateFromRadarFolder(basename)
235
235
236 if thisDate < startDate:
236 if thisDate < startDate:
237 return 0
237 return 0
238
238
239 if thisDate > endDate:
239 if thisDate > endDate:
240 return 0
240 return 0
241
241
242 return 1
242 return 1
243
243
244 def isFileInDateRange(filename, startDate=None, endDate=None):
244 def isFileInDateRange(filename, startDate=None, endDate=None):
245 """
245 """
246 Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado.
246 Retorna 1 si el archivo de datos se encuentra dentro del rango de horas especificado.
247
247
248 Inputs:
248 Inputs:
249 filename : nombre completo del archivo de datos en formato Jicamarca (.r)
249 filename : nombre completo del archivo de datos en formato Jicamarca (.r)
250
250
251 Su formato deberia ser "?YYYYDDDsss"
251 Su formato deberia ser "?YYYYDDDsss"
252
252
253 siendo:
253 siendo:
254 YYYY : Anio (ejemplo 2015)
254 YYYY : Anio (ejemplo 2015)
255 DDD : Dia del anio (ejemplo 305)
255 DDD : Dia del anio (ejemplo 305)
256 sss : set
256 sss : set
257
257
258 startDate : fecha inicial del rango seleccionado en formato datetime.date
258 startDate : fecha inicial del rango seleccionado en formato datetime.date
259
259
260 endDate : fecha final del rango seleccionado en formato datetime.date
260 endDate : fecha final del rango seleccionado en formato datetime.date
261
261
262 Return:
262 Return:
263 Boolean : Retorna True si el archivo de datos contiene datos en el rango de
263 Boolean : Retorna True si el archivo de datos contiene datos en el rango de
264 fecha especificado, de lo contrario retorna False.
264 fecha especificado, de lo contrario retorna False.
265 Excepciones:
265 Excepciones:
266 Si el archivo no tiene el formato adecuado
266 Si el archivo no tiene el formato adecuado
267 """
267 """
268
268
269 basename = os.path.basename(filename)
269 basename = os.path.basename(filename)
270
270
271 if not isRadarFile(basename):
271 if not isRadarFile(basename):
272 print "The filename %s has not the rigth format" %filename
272 print "The filename %s has not the rigth format" %filename
273 return 0
273 return 0
274
274
275 if startDate and endDate:
275 if startDate and endDate:
276 thisDate = getDateFromRadarFile(basename)
276 thisDate = getDateFromRadarFile(basename)
277
277
278 if thisDate < startDate:
278 if thisDate < startDate:
279 return 0
279 return 0
280
280
281 if thisDate > endDate:
281 if thisDate > endDate:
282 return 0
282 return 0
283
283
284 return 1
284 return 1
285
285
286 def getFileFromSet(path, ext, set):
286 def getFileFromSet(path, ext, set):
287 validFilelist = []
287 validFilelist = []
288 fileList = os.listdir(path)
288 fileList = os.listdir(path)
289
289
290 # 0 1234 567 89A BCDE
290 # 0 1234 567 89A BCDE
291 # H YYYY DDD SSS .ext
291 # H YYYY DDD SSS .ext
292
292
293 for thisFile in fileList:
293 for thisFile in fileList:
294 try:
294 try:
295 year = int(thisFile[1:5])
295 year = int(thisFile[1:5])
296 doy = int(thisFile[5:8])
296 doy = int(thisFile[5:8])
297 except:
297 except:
298 continue
298 continue
299
299
300 if (os.path.splitext(thisFile)[-1].lower() != ext.lower()):
300 if (os.path.splitext(thisFile)[-1].lower() != ext.lower()):
301 continue
301 continue
302
302
303 validFilelist.append(thisFile)
303 validFilelist.append(thisFile)
304
304
305 myfile = fnmatch.filter(validFilelist,'*%4.4d%3.3d%3.3d*'%(year,doy,set))
305 myfile = fnmatch.filter(validFilelist,'*%4.4d%3.3d%3.3d*'%(year,doy,set))
306
306
307 if len(myfile)!= 0:
307 if len(myfile)!= 0:
308 return myfile[0]
308 return myfile[0]
309 else:
309 else:
310 filename = '*%4.4d%3.3d%3.3d%s'%(year,doy,set,ext.lower())
310 filename = '*%4.4d%3.3d%3.3d%s'%(year,doy,set,ext.lower())
311 print 'the filename %s does not exist'%filename
311 print 'the filename %s does not exist'%filename
312 print '...going to the last file: '
312 print '...going to the last file: '
313
313
314 if validFilelist:
314 if validFilelist:
315 validFilelist = sorted( validFilelist, key=str.lower )
315 validFilelist = sorted( validFilelist, key=str.lower )
316 return validFilelist[-1]
316 return validFilelist[-1]
317
317
318 return None
318 return None
319
319
320 def getlastFileFromPath(path, ext):
320 def getlastFileFromPath(path, ext):
321 """
321 """
322 Depura el fileList dejando solo los que cumplan el formato de "PYYYYDDDSSS.ext"
322 Depura el fileList dejando solo los que cumplan el formato de "PYYYYDDDSSS.ext"
323 al final de la depuracion devuelve el ultimo file de la lista que quedo.
323 al final de la depuracion devuelve el ultimo file de la lista que quedo.
324
324
325 Input:
325 Input:
326 fileList : lista conteniendo todos los files (sin path) que componen una determinada carpeta
326 fileList : lista conteniendo todos los files (sin path) que componen una determinada carpeta
327 ext : extension de los files contenidos en una carpeta
327 ext : extension de los files contenidos en una carpeta
328
328
329 Return:
329 Return:
330 El ultimo file de una determinada carpeta, no se considera el path.
330 El ultimo file de una determinada carpeta, no se considera el path.
331 """
331 """
332 validFilelist = []
332 validFilelist = []
333 fileList = os.listdir(path)
333 fileList = os.listdir(path)
334
334
335 # 0 1234 567 89A BCDE
335 # 0 1234 567 89A BCDE
336 # H YYYY DDD SSS .ext
336 # H YYYY DDD SSS .ext
337
337
338 for thisFile in fileList:
338 for thisFile in fileList:
339
339
340 year = thisFile[1:5]
340 year = thisFile[1:5]
341 if not isNumber(year):
341 if not isNumber(year):
342 continue
342 continue
343
343
344 doy = thisFile[5:8]
344 doy = thisFile[5:8]
345 if not isNumber(doy):
345 if not isNumber(doy):
346 continue
346 continue
347
347
348 year = int(year)
348 year = int(year)
349 doy = int(doy)
349 doy = int(doy)
350
350
351 if (os.path.splitext(thisFile)[-1].lower() != ext.lower()):
351 if (os.path.splitext(thisFile)[-1].lower() != ext.lower()):
352 continue
352 continue
353
353
354 validFilelist.append(thisFile)
354 validFilelist.append(thisFile)
355
355
356 if validFilelist:
356 if validFilelist:
357 validFilelist = sorted( validFilelist, key=str.lower )
357 validFilelist = sorted( validFilelist, key=str.lower )
358 return validFilelist[-1]
358 return validFilelist[-1]
359
359
360 return None
360 return None
361
361
362 def checkForRealPath(path, foldercounter, year, doy, set, ext):
362 def checkForRealPath(path, foldercounter, year, doy, set, ext):
363 """
363 """
364 Por ser Linux Case Sensitive entonces checkForRealPath encuentra el nombre correcto de un path,
364 Por ser Linux Case Sensitive entonces checkForRealPath encuentra el nombre correcto de un path,
365 Prueba por varias combinaciones de nombres entre mayusculas y minusculas para determinar
365 Prueba por varias combinaciones de nombres entre mayusculas y minusculas para determinar
366 el path exacto de un determinado file.
366 el path exacto de un determinado file.
367
367
368 Example :
368 Example :
369 nombre correcto del file es .../.../D2009307/P2009307367.ext
369 nombre correcto del file es .../.../D2009307/P2009307367.ext
370
370
371 Entonces la funcion prueba con las siguientes combinaciones
371 Entonces la funcion prueba con las siguientes combinaciones
372 .../.../y2009307367.ext
372 .../.../y2009307367.ext
373 .../.../Y2009307367.ext
373 .../.../Y2009307367.ext
374 .../.../x2009307/y2009307367.ext
374 .../.../x2009307/y2009307367.ext
375 .../.../x2009307/Y2009307367.ext
375 .../.../x2009307/Y2009307367.ext
376 .../.../X2009307/y2009307367.ext
376 .../.../X2009307/y2009307367.ext
377 .../.../X2009307/Y2009307367.ext
377 .../.../X2009307/Y2009307367.ext
378 siendo para este caso, la ultima combinacion de letras, identica al file buscado
378 siendo para este caso, la ultima combinacion de letras, identica al file buscado
379
379
380 Return:
380 Return:
381 Si encuentra la cobinacion adecuada devuelve el path completo y el nombre del file
381 Si encuentra la cobinacion adecuada devuelve el path completo y el nombre del file
382 caso contrario devuelve None como path y el la ultima combinacion de nombre en mayusculas
382 caso contrario devuelve None como path y el la ultima combinacion de nombre en mayusculas
383 para el filename
383 para el filename
384 """
384 """
385 fullfilename = None
385 fullfilename = None
386 find_flag = False
386 find_flag = False
387 filename = None
387 filename = None
388
388
389 prefixDirList = [None,'d','D']
389 prefixDirList = [None,'d','D']
390 if ext.lower() == ".r": #voltage
390 if ext.lower() == ".r": #voltage
391 prefixFileList = ['d','D']
391 prefixFileList = ['d','D']
392 elif ext.lower() == ".pdata": #spectra
392 elif ext.lower() == ".pdata": #spectra
393 prefixFileList = ['p','P']
393 prefixFileList = ['p','P']
394 else:
394 else:
395 return None, filename
395 return None, filename
396
396
397 #barrido por las combinaciones posibles
397 #barrido por las combinaciones posibles
398 for prefixDir in prefixDirList:
398 for prefixDir in prefixDirList:
399 thispath = path
399 thispath = path
400 if prefixDir != None:
400 if prefixDir != None:
401 #formo el nombre del directorio xYYYYDDD (x=d o x=D)
401 #formo el nombre del directorio xYYYYDDD (x=d o x=D)
402 if foldercounter == 0:
402 if foldercounter == 0:
403 thispath = os.path.join(path, "%s%04d%03d" % ( prefixDir, year, doy ))
403 thispath = os.path.join(path, "%s%04d%03d" % ( prefixDir, year, doy ))
404 else:
404 else:
405 thispath = os.path.join(path, "%s%04d%03d_%02d" % ( prefixDir, year, doy , foldercounter))
405 thispath = os.path.join(path, "%s%04d%03d_%02d" % ( prefixDir, year, doy , foldercounter))
406 for prefixFile in prefixFileList: #barrido por las dos combinaciones posibles de "D"
406 for prefixFile in prefixFileList: #barrido por las dos combinaciones posibles de "D"
407 filename = "%s%04d%03d%03d%s" % ( prefixFile, year, doy, set, ext ) #formo el nombre del file xYYYYDDDSSS.ext
407 filename = "%s%04d%03d%03d%s" % ( prefixFile, year, doy, set, ext ) #formo el nombre del file xYYYYDDDSSS.ext
408 fullfilename = os.path.join( thispath, filename ) #formo el path completo
408 fullfilename = os.path.join( thispath, filename ) #formo el path completo
409
409
410 if os.path.exists( fullfilename ): #verifico que exista
410 if os.path.exists( fullfilename ): #verifico que exista
411 find_flag = True
411 find_flag = True
412 break
412 break
413 if find_flag:
413 if find_flag:
414 break
414 break
415
415
416 if not(find_flag):
416 if not(find_flag):
417 return None, filename
417 return None, filename
418
418
419 return fullfilename, filename
419 return fullfilename, filename
420
420
421 def isRadarFolder(folder):
421 def isRadarFolder(folder):
422 try:
422 try:
423 year = int(folder[1:5])
423 year = int(folder[1:5])
424 doy = int(folder[5:8])
424 doy = int(folder[5:8])
425 except:
425 except:
426 return 0
426 return 0
427
427
428 return 1
428 return 1
429
429
430 def isRadarFile(file):
430 def isRadarFile(file):
431 try:
431 try:
432 year = int(file[1:5])
432 year = int(file[1:5])
433 doy = int(file[5:8])
433 doy = int(file[5:8])
434 set = int(file[8:11])
434 set = int(file[8:11])
435 except:
435 except:
436 return 0
436 return 0
437
437
438 return 1
438 return 1
439
439
440 def getDateFromRadarFile(file):
440 def getDateFromRadarFile(file):
441 try:
441 try:
442 year = int(file[1:5])
442 year = int(file[1:5])
443 doy = int(file[5:8])
443 doy = int(file[5:8])
444 set = int(file[8:11])
444 set = int(file[8:11])
445 except:
445 except:
446 return None
446 return None
447
447
448 thisDate = datetime.date(year, 1, 1) + datetime.timedelta(doy-1)
448 thisDate = datetime.date(year, 1, 1) + datetime.timedelta(doy-1)
449 return thisDate
449 return thisDate
450
450
451 def getDateFromRadarFolder(folder):
451 def getDateFromRadarFolder(folder):
452 try:
452 try:
453 year = int(folder[1:5])
453 year = int(folder[1:5])
454 doy = int(folder[5:8])
454 doy = int(folder[5:8])
455 except:
455 except:
456 return None
456 return None
457
457
458 thisDate = datetime.date(year, 1, 1) + datetime.timedelta(doy-1)
458 thisDate = datetime.date(year, 1, 1) + datetime.timedelta(doy-1)
459 return thisDate
459 return thisDate
460
460
461 class JRODataIO:
461 class JRODataIO:
462
462
463 c = 3E8
463 c = 3E8
464
464
465 isConfig = False
465 isConfig = False
466
466
467 basicHeaderObj = None
467 basicHeaderObj = None
468
468
469 systemHeaderObj = None
469 systemHeaderObj = None
470
470
471 radarControllerHeaderObj = None
471 radarControllerHeaderObj = None
472
472
473 processingHeaderObj = None
473 processingHeaderObj = None
474
474
475 dtype = None
475 dtype = None
476
476
477 pathList = []
477 pathList = []
478
478
479 filenameList = []
479 filenameList = []
480
480
481 filename = None
481 filename = None
482
482
483 ext = None
483 ext = None
484
484
485 flagIsNewFile = 1
485 flagIsNewFile = 1
486
486
487 flagDiscontinuousBlock = 0
487 flagDiscontinuousBlock = 0
488
488
489 flagIsNewBlock = 0
489 flagIsNewBlock = 0
490
490
491 fp = None
491 fp = None
492
492
493 firstHeaderSize = 0
493 firstHeaderSize = 0
494
494
495 basicHeaderSize = 24
495 basicHeaderSize = 24
496
496
497 versionFile = 1103
497 versionFile = 1103
498
498
499 fileSize = None
499 fileSize = None
500
500
501 # ippSeconds = None
501 # ippSeconds = None
502
502
503 fileSizeByHeader = None
503 fileSizeByHeader = None
504
504
505 fileIndex = None
505 fileIndex = None
506
506
507 profileIndex = None
507 profileIndex = None
508
508
509 blockIndex = None
509 blockIndex = None
510
510
511 nTotalBlocks = None
511 nTotalBlocks = None
512
512
513 maxTimeStep = 30
513 maxTimeStep = 30
514
514
515 lastUTTime = None
515 lastUTTime = None
516
516
517 datablock = None
517 datablock = None
518
518
519 dataOut = None
519 dataOut = None
520
520
521 blocksize = None
521 blocksize = None
522
522
523 getByBlock = False
523 getByBlock = False
524
524
525 def __init__(self):
525 def __init__(self):
526
526
527 raise NotImplementedError
527 raise NotImplementedError
528
528
529 def run(self):
529 def run(self):
530
530
531 raise NotImplementedError
531 raise NotImplementedError
532
532
533 def getDtypeWidth(self):
533 def getDtypeWidth(self):
534
534
535 dtype_index = get_dtype_index(self.dtype)
535 dtype_index = get_dtype_index(self.dtype)
536 dtype_width = get_dtype_width(dtype_index)
536 dtype_width = get_dtype_width(dtype_index)
537
537
538 return dtype_width
538 return dtype_width
539
539
540 def getAllowedArgs(self):
540 def getAllowedArgs(self):
541 return inspect.getargspec(self.run).args
541 return inspect.getargspec(self.run).args
542
542
543 class JRODataReader(JRODataIO):
543 class JRODataReader(JRODataIO):
544
544
545 firstTime = True
546 online = 0
545 online = 0
547
546
548 realtime = 0
547 realtime = 0
549
548
550 nReadBlocks = 0
549 nReadBlocks = 0
551
550
552 delay = 10 #number of seconds waiting a new file
551 delay = 10 #number of seconds waiting a new file
553
552
554 nTries = 3 #quantity tries
553 nTries = 3 #quantity tries
555
554
556 nFiles = 3 #number of files for searching
555 nFiles = 3 #number of files for searching
557
556
558 path = None
557 path = None
559
558
560 foldercounter = 0
559 foldercounter = 0
561
560
562 flagNoMoreFiles = 0
561 flagNoMoreFiles = 0
563
562
564 datetimeList = []
563 datetimeList = []
565
564
566 __isFirstTimeOnline = 1
565 __isFirstTimeOnline = 1
567
566
568 __printInfo = True
567 __printInfo = True
569
568
570 profileIndex = None
569 profileIndex = None
571
570
572 nTxs = 1
571 nTxs = 1
573
572
574 txIndex = None
573 txIndex = None
575
574
576 #Added--------------------
575 #Added--------------------
577
576
578 selBlocksize = None
577 selBlocksize = None
579
578
580 selBlocktime = None
579 selBlocktime = None
581
580
582 onlineWithDate = False
583 def __init__(self):
581 def __init__(self):
584
582
585 """
583 """
586 This class is used to find data files
584 This class is used to find data files
587
585
588 Example:
586 Example:
589 reader = JRODataReader()
587 reader = JRODataReader()
590 fileList = reader.findDataFiles()
588 fileList = reader.findDataFiles()
591
589
592 """
590 """
593 pass
591 pass
594
592
595
593
596 def createObjByDefault(self):
594 def createObjByDefault(self):
597 """
595 """
598
596
599 """
597 """
600 raise NotImplementedError
598 raise NotImplementedError
601
599
602 def getBlockDimension(self):
600 def getBlockDimension(self):
603
601
604 raise NotImplementedError
602 raise NotImplementedError
605
603
606 def __searchFilesOffLine(self,
604 def searchFilesOffLine(self,
607 path,
605 path,
608 startDate=None,
606 startDate=None,
609 endDate=None,
607 endDate=None,
610 startTime=datetime.time(0,0,0),
608 startTime=datetime.time(0,0,0),
611 endTime=datetime.time(23,59,59),
609 endTime=datetime.time(23,59,59),
612 set=None,
610 set=None,
613 expLabel='',
611 expLabel='',
614 ext='.r',
612 ext='.r',
615 queue=None,
613 cursor=None,
616 cursor=None,
614 skip=None,
617 skip=None,
615 walk=True):
618 walk=True):
616
619 self.filenameList = []
617 self.filenameList = []
620 self.datetimeList = []
618 self.datetimeList = []
621
619
622 pathList = []
620 pathList = []
623
621
624 dateList, pathList = self.findDatafiles(path, startDate, endDate, expLabel, ext, walk, include_path=True)
622 dateList, pathList = self.findDatafiles(path, startDate, endDate, expLabel, ext, walk, include_path=True)
625
623
626 if dateList == []:
624 if dateList == []:
627 # print "[Reading] Date range selected invalid [%s - %s]: No *%s files in %s)" %(startDate, endDate, ext, path)
625 return [], []
628 return None, None
629
626
630 if len(dateList) > 1:
627 if len(dateList) > 1:
631 print "[Reading] Data found for date range [%s - %s]: total days = %d" %(startDate, endDate, len(dateList))
628 print "[Reading] Data found for date range [%s - %s]: total days = %d" %(startDate, endDate, len(dateList))
632 else:
629 else:
633 print "[Reading] Data found for date range [%s - %s]: date = %s" %(startDate, endDate, dateList[0])
630 print "[Reading] Data found for date range [%s - %s]: date = %s" %(startDate, endDate, dateList[0])
634
631
635 filenameList = []
632 filenameList = []
636 datetimeList = []
633 datetimeList = []
637
634
638 for thisPath in pathList:
635 for thisPath in pathList:
639 # thisPath = pathList[pathDict[file]]
636
640
641 fileList = glob.glob1(thisPath, "*%s" %ext)
637 fileList = glob.glob1(thisPath, "*%s" %ext)
642 fileList.sort()
638 fileList.sort()
643
639
644 skippedFileList = []
640 skippedFileList = []
645
641
646 if cursor is not None and skip is not None:
642 if cursor is not None andk skip is not None:
647 # if cursor*skip > len(fileList):
643
648 if skip == 0:
644 if skip == 0:
649 if queue is not None:
650 queue.put(len(fileList))
651 skippedFileList = []
645 skippedFileList = []
652 else:
646 else:
653 skippedFileList = fileList[cursor*skip: cursor*skip + skip]
647 skippedFileList = fileList[cursor*skip: cursor*skip + skip]
654
648
655 else:
649 else:
656 skippedFileList = fileList
650 skippedFileList = fileList
657
651
658 for file in skippedFileList:
652 for file in skippedFileList:
659
653
660 filename = os.path.join(thisPath,file)
654 filename = os.path.join(thisPath,file)
661
655
662 if not isFileInDateRange(filename, startDate, endDate):
656 if not isFileInDateRange(filename, startDate, endDate):
663 continue
657 continue
664
658
665 thisDatetime = isFileInTimeRange(filename, startDate, endDate, startTime, endTime)
659 thisDatetime = isFileInTimeRange(filename, startDate, endDate, startTime, endTime)
666
660
667 if not(thisDatetime):
661 if not(thisDatetime):
668 continue
662 continue
669
663
670 filenameList.append(filename)
664 filenameList.append(filename)
671 datetimeList.append(thisDatetime)
665 datetimeList.append(thisDatetime)
672
666
673 if not(filenameList):
667 if not(filenameList):
674 print "[Reading] Time range selected invalid [%s - %s]: No *%s files in %s)" %(startTime, endTime, ext, path)
668 print "[Reading] Time range selected invalid [%s - %s]: No *%s files in %s)" %(startTime, endTime, ext, path)
675 return None, None
669 return [], []
676
670
677 print "[Reading] %d file(s) was(were) found in time range: %s - %s" %(len(filenameList), startTime, endTime)
671 print "[Reading] %d file(s) was(were) found in time range: %s - %s" %(len(filenameList), startTime, endTime)
678 print
672 print
679
673
680 for i in range(len(filenameList)):
674 # for i in range(len(filenameList)):
681 print "[Reading] %s -> [%s]" %(filenameList[i], datetimeList[i].ctime())
675 # print "[Reading] %s -> [%s]" %(filenameList[i], datetimeList[i].ctime())
682
676
683 self.filenameList = filenameList
677 self.filenameList = filenameList
684 self.datetimeList = datetimeList
678 self.datetimeList = datetimeList
679
685 return pathList, filenameList
680 return pathList, filenameList
686
681
687 def __searchFilesOnLine(self, path, expLabel="", ext=None, walk=True, set=None, startDate=None, startTime=None):
682 def __searchFilesOnLine(self, path, expLabel = "", ext = None, walk=True, set=None):
688
683
689 """
684 """
690 Busca el ultimo archivo de la ultima carpeta (determinada o no por startDateTime) y
685 Busca el ultimo archivo de la ultima carpeta (determinada o no por startDateTime) y
691 devuelve el archivo encontrado ademas de otros datos.
686 devuelve el archivo encontrado ademas de otros datos.
692
687
693 Input:
688 Input:
694 path : carpeta donde estan contenidos los files que contiene data
689 path : carpeta donde estan contenidos los files que contiene data
695
690
696 expLabel : Nombre del subexperimento (subfolder)
691 expLabel : Nombre del subexperimento (subfolder)
697
692
698 ext : extension de los files
693 ext : extension de los files
699
694
700 walk : Si es habilitado no realiza busquedas dentro de los subdirectorios (doypath)
695 walk : Si es habilitado no realiza busquedas dentro de los ubdirectorios (doypath)
701
696
702 Return:
697 Return:
703 directory : eL directorio donde esta el file encontrado
698 directory : eL directorio donde esta el file encontrado
704 filename : el ultimo file de una determinada carpeta
699 filename : el ultimo file de una determinada carpeta
705 year : el anho
700 year : el anho
706 doy : el numero de dia del anho
701 doy : el numero de dia del anho
707 set : el set del archivo
702 set : el set del archivo
708
703
709
704
710 """
705 """
711 pathList = None
712 filenameList = None
713 if not os.path.isdir(path):
706 if not os.path.isdir(path):
714 return None, None, None, None, None, None
707 return None, None, None, None, None, None
715
708
716 dirList = []
709 dirList = []
717
710
718 if not walk:
711 if not walk:
719 fullpath = path
712 fullpath = path
720 foldercounter = 0
713 foldercounter = 0
721 else:
714 else:
722 # Filtra solo los directorios
715 #Filtra solo los directorios
723 for thisPath in os.listdir(path):
716 for thisPath in os.listdir(path):
724 if not os.path.isdir(os.path.join(path,thisPath)):
717 if not os.path.isdir(os.path.join(path,thisPath)):
725 continue
718 continue
726 if not isRadarFolder(thisPath):
719 if not isRadarFolder(thisPath):
727 continue
720 continue
728
721
729 dirList.append(thisPath)
722 dirList.append(thisPath)
730
723
731 if not(dirList):
724 if not(dirList):
732 return None, None, None, None, None, None
725 return None, None, None, None, None, None
733
726
734 dirList = sorted( dirList, key=str.lower )
727 dirList = sorted( dirList, key=str.lower )
735
728
736 doypath = dirList[-1]
729 doypath = dirList[-1]
737 foldercounter = int(doypath.split('_')[1]) if len(doypath.split('_'))>1 else 0
730 foldercounter = int(doypath.split('_')[1]) if len(doypath.split('_'))>1 else 0
738 fullpath = os.path.join(path, doypath, expLabel)
731 fullpath = os.path.join(path, doypath, expLabel)
739
732
740
733
741 print "[Reading] %s folder was found: " %(fullpath )
734 print "[Reading] %s folder was found: " %(fullpath )
742
735
743 if set == None:
736 if set == None:
744 filename = getlastFileFromPath(fullpath, ext)
737 filename = getlastFileFromPath(fullpath, ext)
745 else:
738 else:
746 filename = getFileFromSet(fullpath, ext, set)
739 filename = getFileFromSet(fullpath, ext, set)
747
740
748 if not(filename):
741 if not(filename):
749 return None, None, None, None, None, None
742 return None, None, None, None, None, None
750
743
751 print "[Reading] %s file was found" %(filename)
744 print "[Reading] %s file was found" %(filename)
752
745
753 if not(self.__verifyFile(os.path.join(fullpath, filename))):
746 if not(self.__verifyFile(os.path.join(fullpath, filename))):
754 return None, None, None, None, None, None
747 return None, None, None, None, None, None
755
748
756 year = int( filename[1:5] )
749 year = int( filename[1:5] )
757 doy = int( filename[5:8] )
750 doy = int( filename[5:8] )
758 set = int( filename[8:11] )
751 set = int( filename[8:11] )
759
752
760 return fullpath, foldercounter, filename, year, doy, set
753 return fullpath, foldercounter, filename, year, doy, set
761
754
762 def __setNextFileOffline(self):
755 def __setNextFileOffline(self):
763
756
764 idFile = self.fileIndex
757 idFile = self.fileIndex
765
758
766 while (True):
759 while (True):
767 idFile += 1
760 idFile += 1
768 if not(idFile < len(self.filenameList)):
761 if not(idFile < len(self.filenameList)):
769 self.flagNoMoreFiles = 1
762 self.flagNoMoreFiles = 1
770 # print "[Reading] No more Files"
763 # print "[Reading] No more Files"
771 return 0
764 return 0
772
765
773 filename = self.filenameList[idFile]
766 filename = self.filenameList[idFile]
774
767
775 if not(self.__verifyFile(filename)):
768 if not(self.__verifyFile(filename)):
776 continue
769 continue
777
770
778 fileSize = os.path.getsize(filename)
771 fileSize = os.path.getsize(filename)
779 fp = open(filename,'rb')
772 fp = open(filename,'rb')
780 break
773 break
781
774
782 self.flagIsNewFile = 1
775 self.flagIsNewFile = 1
783 self.fileIndex = idFile
776 self.fileIndex = idFile
784 self.filename = filename
777 self.filename = filename
785 self.fileSize = fileSize
778 self.fileSize = fileSize
786 self.fp = fp
779 self.fp = fp
787
780
788 #print "[Reading] Setting the file: %s"%self.filename
781 # print "[Reading] Setting the file: %s"%self.filename
789
782
790 return 1
783 return 1
791
784
792 def __setNextFileOnline(self):
785 def __setNextFileOnline(self):
793 """
786 """
794 Busca el siguiente file que tenga suficiente data para ser leida, dentro de un folder especifico, si
787 Busca el siguiente file que tenga suficiente data para ser leida, dentro de un folder especifico, si
795 no encuentra un file valido espera un tiempo determinado y luego busca en los posibles n files
788 no encuentra un file valido espera un tiempo determinado y luego busca en los posibles n files
796 siguientes.
789 siguientes.
797
790
798 Affected:
791 Affected:
799 self.flagIsNewFile
792 self.flagIsNewFile
800 self.filename
793 self.filename
801 self.fileSize
794 self.fileSize
802 self.fp
795 self.fp
803 self.set
796 self.set
804 self.flagNoMoreFiles
797 self.flagNoMoreFiles
805
798
806 Return:
799 Return:
807 0 : si luego de una busqueda del siguiente file valido este no pudo ser encontrado
800 0 : si luego de una busqueda del siguiente file valido este no pudo ser encontrado
808 1 : si el file fue abierto con exito y esta listo a ser leido
801 1 : si el file fue abierto con exito y esta listo a ser leido
809
802
810 Excepciones:
803 Excepciones:
811 Si un determinado file no puede ser abierto
804 Si un determinado file no puede ser abierto
812 """
805 """
813
814 nFiles = 0
806 nFiles = 0
815 fileOk_flag = False
807 fileOk_flag = False
816 firstTime_flag = True
808 firstTime_flag = True
817
809
818 self.set += 1
810 self.set += 1
819
811
820 if self.set > 999:
812 if self.set > 999:
821 self.set = 0
813 self.set = 0
822 self.foldercounter += 1
814 self.foldercounter += 1
823
815
824 #busca el 1er file disponible
816 #busca el 1er file disponible
825 fullfilename, filename = checkForRealPath( self.path, self.foldercounter, self.year, self.doy, self.set, self.ext )
817 fullfilename, filename = checkForRealPath( self.path, self.foldercounter, self.year, self.doy, self.set, self.ext )
826 if fullfilename:
818 if fullfilename:
827 if self.__verifyFile(fullfilename, False):
819 if self.__verifyFile(fullfilename, False):
828 fileOk_flag = True
820 fileOk_flag = True
829
821
830 #si no encuentra un file entonces espera y vuelve a buscar
822 #si no encuentra un file entonces espera y vuelve a buscar
831 if not(fileOk_flag):
823 if not(fileOk_flag):
832 for nFiles in range(self.nFiles+1): #busco en los siguientes self.nFiles+1 files posibles
824 for nFiles in range(self.nFiles+1): #busco en los siguientes self.nFiles+1 files posibles
833
825
834 if firstTime_flag: #si es la 1era vez entonces hace el for self.nTries veces
826 if firstTime_flag: #si es la 1era vez entonces hace el for self.nTries veces
835 tries = self.nTries
827 tries = self.nTries
836 else:
828 else:
837 tries = 1 #si no es la 1era vez entonces solo lo hace una vez
829 tries = 1 #si no es la 1era vez entonces solo lo hace una vez
838
830
839 for nTries in range( tries ):
831 for nTries in range( tries ):
840 if firstTime_flag:
832 if firstTime_flag:
841 print "\t[Reading] Waiting %0.2f sec for the next file: \"%s\" , try %03d ..." % ( self.delay, filename, nTries+1 )
833 print "\t[Reading] Waiting %0.2f sec for the next file: \"%s\" , try %03d ..." % ( self.delay, filename, nTries+1 )
842 sleep( self.delay )
834 sleep( self.delay )
843 else:
835 else:
844 print "\t[Reading] Searching the next \"%s%04d%03d%03d%s\" file ..." % (self.optchar, self.year, self.doy, self.set, self.ext)
836 print "\t[Reading] Searching the next \"%s%04d%03d%03d%s\" file ..." % (self.optchar, self.year, self.doy, self.set, self.ext)
845
837
846 fullfilename, filename = checkForRealPath( self.path, self.foldercounter, self.year, self.doy, self.set, self.ext )
838 fullfilename, filename = checkForRealPath( self.path, self.foldercounter, self.year, self.doy, self.set, self.ext )
847 if fullfilename:
839 if fullfilename:
848 if self.__verifyFile(fullfilename):
840 if self.__verifyFile(fullfilename):
849 fileOk_flag = True
841 fileOk_flag = True
850 break
842 break
851
843
852 if fileOk_flag:
844 if fileOk_flag:
853 break
845 break
854
846
855 firstTime_flag = False
847 firstTime_flag = False
856
848
857 print "\t[Reading] Skipping the file \"%s\" due to this file doesn't exist" % filename
849 print "\t[Reading] Skipping the file \"%s\" due to this file doesn't exist" % filename
858 self.set += 1
850 self.set += 1
859
851
860 if nFiles == (self.nFiles-1): #si no encuentro el file buscado cambio de carpeta y busco en la siguiente carpeta
852 if nFiles == (self.nFiles-1): #si no encuentro el file buscado cambio de carpeta y busco en la siguiente carpeta
861 self.set = 0
853 self.set = 0
862 self.doy += 1
854 self.doy += 1
863 self.foldercounter = 0
855 self.foldercounter = 0
864
856
865 if fileOk_flag:
857 if fileOk_flag:
866 self.fileSize = os.path.getsize( fullfilename )
858 self.fileSize = os.path.getsize( fullfilename )
867 self.filename = fullfilename
859 self.filename = fullfilename
868 self.flagIsNewFile = 1
860 self.flagIsNewFile = 1
869 if self.fp != None: self.fp.close()
861 if self.fp != None: self.fp.close()
870 self.fp = open(fullfilename, 'rb')
862 self.fp = open(fullfilename, 'rb')
871 self.flagNoMoreFiles = 0
863 self.flagNoMoreFiles = 0
872 # print '[Reading] Setting the file: %s' % fullfilename
864 # print '[Reading] Setting the file: %s' % fullfilename
873 else:
865 else:
874 self.fileSize = 0
866 self.fileSize = 0
875 self.filename = None
867 self.filename = None
876 self.flagIsNewFile = 0
868 self.flagIsNewFile = 0
877 self.fp = None
869 self.fp = None
878 self.flagNoMoreFiles = 1
870 self.flagNoMoreFiles = 1
879 # print '[Reading] No more files to read'
871 # print '[Reading] No more files to read'
880
872
881 return fileOk_flag
873 return fileOk_flag
882
874
883 def setNextFile(self):
875 def setNextFile(self):
884 if self.fp != None:
876 if self.fp != None:
885 self.fp.close()
877 self.fp.close()
878
886 if self.online:
879 if self.online:
887 newFile = self.__setNextFileOnline()
880 newFile = self.__setNextFileOnline()
888 else:
881 else:
889 newFile = self.__setNextFileOffline()
882 newFile = self.__setNextFileOffline()
883
890 if not(newFile):
884 if not(newFile):
891 if self.onlineWithDate is True:
892 self.onlineWithDate=False
893 self.online = True
894 self.firstTime = False
895 self.setup(
896 path=self.path,
897 startDate=self.startDate,
898 endDate=self.endDate,
899 startTime=self.startTime ,
900 endTime=self.endTime,
901 set=self.set,
902 expLabel=self.expLabel,
903 ext=self.ext,
904 online=self.online,
905 delay=self.delay,
906 walk=self.walk,
907 getblock=self.getblock,
908 nTxs=self.nTxs,
909 realtime=self.realtime,
910 blocksize=self.blocksize,
911 blocktime=self.blocktime
912 )
913 return 1
914 print '[Reading] No more files to read'
885 print '[Reading] No more files to read'
915 return 0
886 return 0
916
887
917 if self.verbose:
888 if self.verbose:
918 print '[Reading] Setting the file: %s' % self.filename
889 print '[Reading] Setting the file: %s' % self.filename
919
890
920 self.__readFirstHeader()
891 self.__readFirstHeader()
921 self.nReadBlocks = 0
892 self.nReadBlocks = 0
922 return 1
893 return 1
923
894
924 def __waitNewBlock(self):
895 def __waitNewBlock(self):
925 """
896 """
926 Return 1 si se encontro un nuevo bloque de datos, 0 de otra forma.
897 Return 1 si se encontro un nuevo bloque de datos, 0 de otra forma.
927
898
928 Si el modo de lectura es OffLine siempre retorn 0
899 Si el modo de lectura es OffLine siempre retorn 0
929 """
900 """
930 if not self.online:
901 if not self.online:
931 return 0
902 return 0
932
903
933 if (self.nReadBlocks >= self.processingHeaderObj.dataBlocksPerFile):
904 if (self.nReadBlocks >= self.processingHeaderObj.dataBlocksPerFile):
934 return 0
905 return 0
935
906
936 currentPointer = self.fp.tell()
907 currentPointer = self.fp.tell()
937
908
938 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
909 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
939
910
940 for nTries in range( self.nTries ):
911 for nTries in range( self.nTries ):
941
912
942 self.fp.close()
913 self.fp.close()
943 self.fp = open( self.filename, 'rb' )
914 self.fp = open( self.filename, 'rb' )
944 self.fp.seek( currentPointer )
915 self.fp.seek( currentPointer )
945
916
946 self.fileSize = os.path.getsize( self.filename )
917 self.fileSize = os.path.getsize( self.filename )
947 currentSize = self.fileSize - currentPointer
918 currentSize = self.fileSize - currentPointer
948
919
949 if ( currentSize >= neededSize ):
920 if ( currentSize >= neededSize ):
950 self.basicHeaderObj.read(self.fp)
921 self.basicHeaderObj.read(self.fp)
951 return 1
922 return 1
952
923
953 if self.fileSize == self.fileSizeByHeader:
924 if self.fileSize == self.fileSizeByHeader:
954 # self.flagEoF = True
925 # self.flagEoF = True
955 return 0
926 return 0
956
927
957 print "[Reading] Waiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
928 print "[Reading] Waiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
958 sleep( self.delay )
929 sleep( self.delay )
959
930
960
931
961 return 0
932 return 0
962
933
963 def waitDataBlock(self,pointer_location):
934 def waitDataBlock(self,pointer_location):
964
935
965 currentPointer = pointer_location
936 currentPointer = pointer_location
966
937
967 neededSize = self.processingHeaderObj.blockSize #+ self.basicHeaderSize
938 neededSize = self.processingHeaderObj.blockSize #+ self.basicHeaderSize
968
939
969 for nTries in range( self.nTries ):
940 for nTries in range( self.nTries ):
970 self.fp.close()
941 self.fp.close()
971 self.fp = open( self.filename, 'rb' )
942 self.fp = open( self.filename, 'rb' )
972 self.fp.seek( currentPointer )
943 self.fp.seek( currentPointer )
973
944
974 self.fileSize = os.path.getsize( self.filename )
945 self.fileSize = os.path.getsize( self.filename )
975 currentSize = self.fileSize - currentPointer
946 currentSize = self.fileSize - currentPointer
976
947
977 if ( currentSize >= neededSize ):
948 if ( currentSize >= neededSize ):
978 return 1
949 return 1
979
950
980 print "[Reading] Waiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
951 print "[Reading] Waiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
981 sleep( self.delay )
952 sleep( self.delay )
982
953
983 return 0
954 return 0
984
955
985 def __jumpToLastBlock(self):
956 def __jumpToLastBlock(self):
986
957
987 if not(self.__isFirstTimeOnline):
958 if not(self.__isFirstTimeOnline):
988 return
959 return
989
960
990 csize = self.fileSize - self.fp.tell()
961 csize = self.fileSize - self.fp.tell()
991 blocksize = self.processingHeaderObj.blockSize
962 blocksize = self.processingHeaderObj.blockSize
992
963
993 #salta el primer bloque de datos
964 #salta el primer bloque de datos
994 if csize > self.processingHeaderObj.blockSize:
965 if csize > self.processingHeaderObj.blockSize:
995 self.fp.seek(self.fp.tell() + blocksize)
966 self.fp.seek(self.fp.tell() + blocksize)
996 else:
967 else:
997 return
968 return
998
969
999 csize = self.fileSize - self.fp.tell()
970 csize = self.fileSize - self.fp.tell()
1000 neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize
971 neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize
1001 while True:
972 while True:
1002
973
1003 if self.fp.tell()<self.fileSize:
974 if self.fp.tell()<self.fileSize:
1004 self.fp.seek(self.fp.tell() + neededsize)
975 self.fp.seek(self.fp.tell() + neededsize)
1005 else:
976 else:
1006 self.fp.seek(self.fp.tell() - neededsize)
977 self.fp.seek(self.fp.tell() - neededsize)
1007 break
978 break
1008
979
1009 # csize = self.fileSize - self.fp.tell()
980 # csize = self.fileSize - self.fp.tell()
1010 # neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize
981 # neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize
1011 # factor = int(csize/neededsize)
982 # factor = int(csize/neededsize)
1012 # if factor > 0:
983 # if factor > 0:
1013 # self.fp.seek(self.fp.tell() + factor*neededsize)
984 # self.fp.seek(self.fp.tell() + factor*neededsize)
1014
985
1015 self.flagIsNewFile = 0
986 self.flagIsNewFile = 0
1016 self.__isFirstTimeOnline = 0
987 self.__isFirstTimeOnline = 0
1017
988
1018 def __setNewBlock(self):
989 def __setNewBlock(self):
1019 #if self.server is None:
990 #if self.server is None:
1020 if self.fp == None:
991 if self.fp == None:
1021 return 0
992 return 0
1022
993
1023 # if self.online:
994 # if self.online:
1024 # self.__jumpToLastBlock()
995 # self.__jumpToLastBlock()
1025
996
1026 if self.flagIsNewFile:
997 if self.flagIsNewFile:
1027 self.lastUTTime = self.basicHeaderObj.utc
998 self.lastUTTime = self.basicHeaderObj.utc
1028 return 1
999 return 1
1029
1000
1030 if self.realtime:
1001 if self.realtime:
1031 self.flagDiscontinuousBlock = 1
1002 self.flagDiscontinuousBlock = 1
1032 if not(self.setNextFile()):
1003 if not(self.setNextFile()):
1033 return 0
1004 return 0
1034 else:
1005 else:
1035 return 1
1006 return 1
1036 #if self.server is None:
1007 #if self.server is None:
1037 currentSize = self.fileSize - self.fp.tell()
1008 currentSize = self.fileSize - self.fp.tell()
1038 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
1009 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
1039 if (currentSize >= neededSize):
1010 if (currentSize >= neededSize):
1040 self.basicHeaderObj.read(self.fp)
1011 self.basicHeaderObj.read(self.fp)
1041 self.lastUTTime = self.basicHeaderObj.utc
1012 self.lastUTTime = self.basicHeaderObj.utc
1042 return 1
1013 return 1
1043 # else:
1014 # else:
1044 # self.basicHeaderObj.read(self.zHeader)
1015 # self.basicHeaderObj.read(self.zHeader)
1045 # self.lastUTTime = self.basicHeaderObj.utc
1016 # self.lastUTTime = self.basicHeaderObj.utc
1046 # return 1
1017 # return 1
1047 if self.__waitNewBlock():
1018 if self.__waitNewBlock():
1048 self.lastUTTime = self.basicHeaderObj.utc
1019 self.lastUTTime = self.basicHeaderObj.utc
1049 return 1
1020 return 1
1050 #if self.server is None:
1021 #if self.server is None:
1051 if not(self.setNextFile()):
1022 if not(self.setNextFile()):
1052 return 0
1023 return 0
1053
1024
1054 deltaTime = self.basicHeaderObj.utc - self.lastUTTime #
1025 deltaTime = self.basicHeaderObj.utc - self.lastUTTime #
1055 self.lastUTTime = self.basicHeaderObj.utc
1026 self.lastUTTime = self.basicHeaderObj.utc
1056
1027
1057 self.flagDiscontinuousBlock = 0
1028 self.flagDiscontinuousBlock = 0
1058
1029
1059 if deltaTime > self.maxTimeStep:
1030 if deltaTime > self.maxTimeStep:
1060 self.flagDiscontinuousBlock = 1
1031 self.flagDiscontinuousBlock = 1
1061
1032
1062 return 1
1033 return 1
1063
1034
1064 def readNextBlock(self):
1035 def readNextBlock(self):
1065
1036
1066 #Skip block out of startTime and endTime
1037 #Skip block out of startTime and endTime
1067 while True:
1038 while True:
1068 if not(self.__setNewBlock()):
1039 if not(self.__setNewBlock()):
1069 print 'returning'
1070 return 0
1040 return 0
1041
1071 if not(self.readBlock()):
1042 if not(self.readBlock()):
1072 return 0
1043 return 0
1044
1073 self.getBasicHeader()
1045 self.getBasicHeader()
1046
1074 if not isTimeInRange(self.dataOut.datatime.time(), self.startTime, self.endTime):
1047 if not isTimeInRange(self.dataOut.datatime.time(), self.startTime, self.endTime):
1075
1048
1076 print "[Reading] Block No. %d/%d -> %s [Skipping]" %(self.nReadBlocks,
1049 print "[Reading] Block No. %d/%d -> %s [Skipping]" %(self.nReadBlocks,
1077 self.processingHeaderObj.dataBlocksPerFile,
1050 self.processingHeaderObj.dataBlocksPerFile,
1078 self.dataOut.datatime.ctime())
1051 self.dataOut.datatime.ctime())
1079 continue
1052 continue
1080
1053
1081 break
1054 break
1082
1055
1083 if self.verbose:
1056 if self.verbose:
1084 print "[Reading] Block No. %d/%d -> %s" %(self.nReadBlocks,
1057 print "[Reading] Block No. %d/%d -> %s" %(self.nReadBlocks,
1085 self.processingHeaderObj.dataBlocksPerFile,
1058 self.processingHeaderObj.dataBlocksPerFile,
1086 self.dataOut.datatime.ctime())
1059 self.dataOut.datatime.ctime())
1087 return 1
1060 return 1
1088
1061
1089 def __readFirstHeader(self):
1062 def __readFirstHeader(self):
1090
1063
1091 self.basicHeaderObj.read(self.fp)
1064 self.basicHeaderObj.read(self.fp)
1092 self.systemHeaderObj.read(self.fp)
1065 self.systemHeaderObj.read(self.fp)
1093 self.radarControllerHeaderObj.read(self.fp)
1066 self.radarControllerHeaderObj.read(self.fp)
1094 self.processingHeaderObj.read(self.fp)
1067 self.processingHeaderObj.read(self.fp)
1095
1068
1096 self.firstHeaderSize = self.basicHeaderObj.size
1069 self.firstHeaderSize = self.basicHeaderObj.size
1097
1070
1098 datatype = int(numpy.log2((self.processingHeaderObj.processFlags & PROCFLAG.DATATYPE_MASK))-numpy.log2(PROCFLAG.DATATYPE_CHAR))
1071 datatype = int(numpy.log2((self.processingHeaderObj.processFlags & PROCFLAG.DATATYPE_MASK))-numpy.log2(PROCFLAG.DATATYPE_CHAR))
1099 if datatype == 0:
1072 if datatype == 0:
1100 datatype_str = numpy.dtype([('real','<i1'),('imag','<i1')])
1073 datatype_str = numpy.dtype([('real','<i1'),('imag','<i1')])
1101 elif datatype == 1:
1074 elif datatype == 1:
1102 datatype_str = numpy.dtype([('real','<i2'),('imag','<i2')])
1075 datatype_str = numpy.dtype([('real','<i2'),('imag','<i2')])
1103 elif datatype == 2:
1076 elif datatype == 2:
1104 datatype_str = numpy.dtype([('real','<i4'),('imag','<i4')])
1077 datatype_str = numpy.dtype([('real','<i4'),('imag','<i4')])
1105 elif datatype == 3:
1078 elif datatype == 3:
1106 datatype_str = numpy.dtype([('real','<i8'),('imag','<i8')])
1079 datatype_str = numpy.dtype([('real','<i8'),('imag','<i8')])
1107 elif datatype == 4:
1080 elif datatype == 4:
1108 datatype_str = numpy.dtype([('real','<f4'),('imag','<f4')])
1081 datatype_str = numpy.dtype([('real','<f4'),('imag','<f4')])
1109 elif datatype == 5:
1082 elif datatype == 5:
1110 datatype_str = numpy.dtype([('real','<f8'),('imag','<f8')])
1083 datatype_str = numpy.dtype([('real','<f8'),('imag','<f8')])
1111 else:
1084 else:
1112 raise ValueError, 'Data type was not defined'
1085 raise ValueError, 'Data type was not defined'
1113
1086
1114 self.dtype = datatype_str
1087 self.dtype = datatype_str
1115 #self.ippSeconds = 2 * 1000 * self.radarControllerHeaderObj.ipp / self.c
1088 #self.ippSeconds = 2 * 1000 * self.radarControllerHeaderObj.ipp / self.c
1116 self.fileSizeByHeader = self.processingHeaderObj.dataBlocksPerFile * self.processingHeaderObj.blockSize + self.firstHeaderSize + self.basicHeaderSize*(self.processingHeaderObj.dataBlocksPerFile - 1)
1089 self.fileSizeByHeader = self.processingHeaderObj.dataBlocksPerFile * self.processingHeaderObj.blockSize + self.firstHeaderSize + self.basicHeaderSize*(self.processingHeaderObj.dataBlocksPerFile - 1)
1117 # self.dataOut.channelList = numpy.arange(self.systemHeaderObj.numChannels)
1090 # self.dataOut.channelList = numpy.arange(self.systemHeaderObj.numChannels)
1118 # self.dataOut.channelIndexList = numpy.arange(self.systemHeaderObj.numChannels)
1091 # self.dataOut.channelIndexList = numpy.arange(self.systemHeaderObj.numChannels)
1119 self.getBlockDimension()
1092 self.getBlockDimension()
1120
1093
1121 def __verifyFile(self, filename, msgFlag=True):
1094 def __verifyFile(self, filename, msgFlag=True):
1122
1095
1123 msg = None
1096 msg = None
1124
1097
1125 try:
1098 try:
1126 fp = open(filename, 'rb')
1099 fp = open(filename, 'rb')
1127 except IOError:
1100 except IOError:
1128
1101
1129 if msgFlag:
1102 if msgFlag:
1130 print "[Reading] File %s can't be opened" % (filename)
1103 print "[Reading] File %s can't be opened" % (filename)
1131
1104
1132 return False
1105 return False
1133
1106
1134 currentPosition = fp.tell()
1107 currentPosition = fp.tell()
1135 neededSize = self.processingHeaderObj.blockSize + self.firstHeaderSize
1108 neededSize = self.processingHeaderObj.blockSize + self.firstHeaderSize
1136
1109
1137 if neededSize == 0:
1110 if neededSize == 0:
1138 basicHeaderObj = BasicHeader(LOCALTIME)
1111 basicHeaderObj = BasicHeader(LOCALTIME)
1139 systemHeaderObj = SystemHeader()
1112 systemHeaderObj = SystemHeader()
1140 radarControllerHeaderObj = RadarControllerHeader()
1113 radarControllerHeaderObj = RadarControllerHeader()
1141 processingHeaderObj = ProcessingHeader()
1114 processingHeaderObj = ProcessingHeader()
1142
1115
1143 if not( basicHeaderObj.read(fp) ):
1116 if not( basicHeaderObj.read(fp) ):
1144 fp.close()
1117 fp.close()
1145 return False
1118 return False
1146
1119
1147 if not( systemHeaderObj.read(fp) ):
1120 if not( systemHeaderObj.read(fp) ):
1148 fp.close()
1121 fp.close()
1149 return False
1122 return False
1150
1123
1151 if not( radarControllerHeaderObj.read(fp) ):
1124 if not( radarControllerHeaderObj.read(fp) ):
1152 fp.close()
1125 fp.close()
1153 return False
1126 return False
1154
1127
1155 if not( processingHeaderObj.read(fp) ):
1128 if not( processingHeaderObj.read(fp) ):
1156 fp.close()
1129 fp.close()
1157 return False
1130 return False
1158
1131
1159 neededSize = processingHeaderObj.blockSize + basicHeaderObj.size
1132 neededSize = processingHeaderObj.blockSize + basicHeaderObj.size
1160 else:
1133 else:
1161 msg = "[Reading] Skipping the file %s due to it hasn't enough data" %filename
1134 msg = "[Reading] Skipping the file %s due to it hasn't enough data" %filename
1162
1135
1163 fp.close()
1136 fp.close()
1164
1137
1165 fileSize = os.path.getsize(filename)
1138 fileSize = os.path.getsize(filename)
1166 currentSize = fileSize - currentPosition
1139 currentSize = fileSize - currentPosition
1167
1140
1168 if currentSize < neededSize:
1141 if currentSize < neededSize:
1169 if msgFlag and (msg != None):
1142 if msgFlag and (msg != None):
1170 print msg
1143 print msg
1171 return False
1144 return False
1172
1145
1173 return True
1146 return True
1174
1147
1175 def findDatafiles(self, path, startDate=None, endDate=None, expLabel='', ext='.r', walk=True, include_path=False):
1148 def findDatafiles(self, path, startDate=None, endDate=None, expLabel='', ext='.r', walk=True, include_path=False):
1176
1149
1177 path_empty = True
1150 path_empty = True
1178
1151
1179 dateList = []
1152 dateList = []
1180 pathList = []
1153 pathList = []
1181
1154
1182 multi_path = path.split(',')
1155 multi_path = path.split(',')
1183
1156
1184 if not walk:
1157 if not walk:
1185
1158
1186 for single_path in multi_path:
1159 for single_path in multi_path:
1187
1160
1188 if not os.path.isdir(single_path):
1161 if not os.path.isdir(single_path):
1189 continue
1162 continue
1190
1163
1191 fileList = glob.glob1(single_path, "*"+ext)
1164 fileList = glob.glob1(single_path, "*"+ext)
1192
1165
1193 if not fileList:
1166 if not fileList:
1194 continue
1167 continue
1195
1168
1196 path_empty = False
1169 path_empty = False
1197
1170
1198 fileList.sort()
1171 fileList.sort()
1199
1172
1200 for thisFile in fileList:
1173 for thisFile in fileList:
1201
1174
1202 if not os.path.isfile(os.path.join(single_path, thisFile)):
1175 if not os.path.isfile(os.path.join(single_path, thisFile)):
1203 continue
1176 continue
1204
1177
1205 if not isRadarFile(thisFile):
1178 if not isRadarFile(thisFile):
1206 continue
1179 continue
1207
1180
1208 if not isFileInDateRange(thisFile, startDate, endDate):
1181 if not isFileInDateRange(thisFile, startDate, endDate):
1209 continue
1182 continue
1210
1183
1211 thisDate = getDateFromRadarFile(thisFile)
1184 thisDate = getDateFromRadarFile(thisFile)
1212
1185
1213 if thisDate in dateList:
1186 if thisDate in dateList:
1214 continue
1187 continue
1215
1188
1216 dateList.append(thisDate)
1189 dateList.append(thisDate)
1217 pathList.append(single_path)
1190 pathList.append(single_path)
1218
1191
1219 else:
1192 else:
1220 for single_path in multi_path:
1193 for single_path in multi_path:
1221
1194
1222 if not os.path.isdir(single_path):
1195 if not os.path.isdir(single_path):
1223 continue
1196 continue
1224
1197
1225 dirList = []
1198 dirList = []
1226
1199
1227 for thisPath in os.listdir(single_path):
1200 for thisPath in os.listdir(single_path):
1228
1201
1229 if not os.path.isdir(os.path.join(single_path,thisPath)):
1202 if not os.path.isdir(os.path.join(single_path,thisPath)):
1230 continue
1203 continue
1231
1204
1232 if not isRadarFolder(thisPath):
1205 if not isRadarFolder(thisPath):
1233 continue
1206 continue
1234
1207
1235 if not isFolderInDateRange(thisPath, startDate, endDate):
1208 if not isFolderInDateRange(thisPath, startDate, endDate):
1236 continue
1209 continue
1237
1210
1238 dirList.append(thisPath)
1211 dirList.append(thisPath)
1239
1212
1240 if not dirList:
1213 if not dirList:
1241 continue
1214 continue
1242
1215
1243 dirList.sort()
1216 dirList.sort()
1244
1217
1245 for thisDir in dirList:
1218 for thisDir in dirList:
1246
1219
1247 datapath = os.path.join(single_path, thisDir, expLabel)
1220 datapath = os.path.join(single_path, thisDir, expLabel)
1248 fileList = glob.glob1(datapath, "*"+ext)
1221 fileList = glob.glob1(datapath, "*"+ext)
1249
1222
1250 if not fileList:
1223 if not fileList:
1251 continue
1224 continue
1252
1225
1253 path_empty = False
1226 path_empty = False
1254
1227
1255 thisDate = getDateFromRadarFolder(thisDir)
1228 thisDate = getDateFromRadarFolder(thisDir)
1256
1229
1257 pathList.append(datapath)
1230 pathList.append(datapath)
1258 dateList.append(thisDate)
1231 dateList.append(thisDate)
1259
1232
1260 dateList.sort()
1233 dateList.sort()
1261
1234
1262 if walk:
1235 if walk:
1263 pattern_path = os.path.join(multi_path[0], "[dYYYYDDD]", expLabel)
1236 pattern_path = os.path.join(multi_path[0], "[dYYYYDDD]", expLabel)
1264 else:
1237 else:
1265 pattern_path = multi_path[0]
1238 pattern_path = multi_path[0]
1266
1239
1267 if path_empty:
1240 if path_empty:
1268 print "[Reading] No *%s files in %s for %s to %s" %(ext, pattern_path, startDate, endDate)
1241 print "[Reading] No *%s files in %s for %s to %s" %(ext, pattern_path, startDate, endDate)
1269 else:
1242 else:
1270 if not dateList:
1243 if not dateList:
1271 print "[Reading] Date range selected invalid [%s - %s]: No *%s files in %s)" %(startDate, endDate, ext, path)
1244 print "[Reading] Date range selected invalid [%s - %s]: No *%s files in %s)" %(startDate, endDate, ext, path)
1272
1245
1273 if include_path:
1246 if include_path:
1274 return dateList, pathList
1247 return dateList, pathList
1275
1248
1276 return dateList
1249 return dateList
1277
1250
1278 def setup(self,
1251 def setup(self,
1279 path=None,
1252 path=None,
1280 startDate=None,
1253 startDate=None,
1281 endDate=None,
1254 endDate=None,
1282 startTime=datetime.time(0,0,0),
1255 startTime=datetime.time(0,0,0),
1283 endTime=datetime.time(23,59,59),
1256 endTime=datetime.time(23,59,59),
1284 set=None,
1257 set=None,
1285 expLabel = "",
1258 expLabel = "",
1286 ext = None,
1259 ext = None,
1287 online = False,
1260 online = False,
1288 delay = 60,
1261 delay = 60,
1289 walk = True,
1262 walk = True,
1290 getblock = False,
1263 getblock = False,
1291 nTxs = 1,
1264 nTxs = 1,
1292 realtime=False,
1265 realtime=False,
1293 blocksize=None,
1266 blocksize=None,
1294 blocktime=None,
1267 blocktime=None,
1268 skip=None,
1269 cursor=None,
1270 warnings=True,
1295 verbose=True,
1271 verbose=True,
1272 server=None,
1296 **kwargs):
1273 **kwargs):
1297
1274 if server is not None:
1298 if path == None:
1275 if 'tcp://' in server:
1299 raise ValueError, "[Reading] The path is not valid"
1276 address = server
1300
1277 else:
1278 address = 'ipc:///tmp/%s' % server
1279 self.server = address
1280 self.context = zmq.Context()
1281 self.receiver = self.context.socket(zmq.PULL)
1282 self.receiver.connect(self.server)
1283 time.sleep(0.5)
1284 print '[Starting] ReceiverData from {}'.format(self.server)
1285 else:
1286 self.server = None
1287 if path == None:
1288 raise ValueError, "[Reading] The path is not valid"
1301
1289
1302 if ext == None:
1290 if ext == None:
1303 ext = self.ext
1291 ext = self.ext
1304
1292
1305 self.verbose=verbose
1293 if online:
1306 self.path = path
1294 print "[Reading] Searching files in online mode..."
1307 self.startDate = startDate
1295
1308 self.endDate = endDate
1296 for nTries in range( self.nTries ):
1309 self.startTime = startTime
1297 fullpath, foldercounter, file, year, doy, set = self.__searchFilesOnLine(path=path, expLabel=expLabel, ext=ext, walk=walk, set=set)
1310 self.endTime = endTime
1298
1311 self.set = set
1299 if fullpath:
1312 self.expLabel = expLabel
1300 break
1313 self.ext = ext
1301
1314 self.online = online
1302 print '[Reading] Waiting %0.2f sec for an valid file in %s: try %02d ...' % (self.delay, path, nTries+1)
1315 self.delay = delay
1303 sleep( self.delay )
1316 self.walk = walk
1304
1317 self.getblock = getblock
1305 if not(fullpath):
1318 self.nTxs = nTxs
1306 print "[Reading] There 'isn't any valid file in %s" % path
1319 self.realtime = realtime
1307 return
1320 self.blocksize = blocksize
1308
1321 self.blocktime = blocktime
1309 self.year = year
1322
1310 self.doy = doy
1323
1311 self.set = set - 1
1324 if self.firstTime is True:
1312 self.path = path
1325 pathList, filenameList = self.__searchFilesOffLine(path, startDate=startDate, endDate=endDate,
1313 self.foldercounter = foldercounter
1314 last_set = None
1315 else:
1316 print "[Reading] Searching files in offline mode ..."
1317 pathList, filenameList = self.searchFilesOffLine(path, startDate=startDate, endDate=endDate,
1326 startTime=startTime, endTime=endTime,
1318 startTime=startTime, endTime=endTime,
1327 set=set, expLabel=expLabel, ext=ext,
1319 set=set, expLabel=expLabel, ext=ext,
1328 walk=walk)
1320 walk=walk, cursor=cursor,
1329 if filenameList is not None: filenameList = filenameList[:-1]
1321 skip=skip)
1330
1322
1331 if pathList is not None and filenameList is not None and online:
1323 if not(pathList):
1332 self.onlineWithDate = True
1333 online = False
1334 self.fileIndex = -1
1324 self.fileIndex = -1
1335 self.pathList = pathList
1325 self.pathList = []
1336 self.filenameList = filenameList
1326 self.filenameList = []
1337 file_name = os.path.basename(filenameList[-1])
1327 return
1338 basename, ext = os.path.splitext(file_name)
1328
1339 last_set = int(basename[-3:])
1340
1341 if online:
1342 print "[Reading] Searching files in online mode..."
1343
1344 for nTries in range(self.nTries):
1345 fullpath, foldercounter, file, year, doy, set = self.__searchFilesOnLine(path=path,
1346 expLabel=expLabel,
1347 ext=ext,
1348 walk=walk,
1349 startDate=startDate,
1350 startTime=startTime,
1351 set=set)
1352
1353 if fullpath:
1354 break
1355 print '[Reading] Waiting %0.2f sec for an valid file in %s: try %02d ...' % (self.delay, path, nTries+1)
1356 sleep( self.delay )
1357
1358 if not(fullpath):
1359 print "[Reading] There 'isn't any valid file in %s" % path
1360 return
1361
1362 self.year = year
1363 self.doy = doy
1364 self.set = set - 1
1365 self.path = path
1366 self.foldercounter = foldercounter
1367 last_set = None
1368 else:
1369 print "[Reading] Searching files in offline mode ..."
1370 pathList, filenameList = self.__searchFilesOffLine(path, startDate=startDate, endDate=endDate,
1371 startTime=startTime, endTime=endTime,
1372 set=set, expLabel=expLabel, ext=ext,
1373 walk=walk)
1374
1375 if not(pathList):
1376 # print "[Reading] No *%s files in %s (%s - %s)"%(ext, path,
1377 # datetime.datetime.combine(startDate,startTime).ctime(),
1378 # datetime.datetime.combine(endDate,endTime).ctime())
1379
1380 # sys.exit(-1)
1381
1382 self.fileIndex = -1
1383 self.pathList = []
1384 self.filenameList = []
1385 return
1386
1387 self.fileIndex = -1
1388 self.pathList = pathList
1389 self.filenameList = filenameList
1390 file_name = os.path.basename(filenameList[-1])
1391 basename, ext = os.path.splitext(file_name)
1392 last_set = int(basename[-3:])
1393
1394
1395 self.online = online
1396 self.realtime = realtime
1397 self.delay = delay
1398 ext = ext.lower()
1399 self.ext = ext
1400 self.getByBlock = getblock
1401 self.nTxs = nTxs
1402 self.startTime = startTime
1403 self.endTime = endTime
1404
1405
1406 #Added-----------------
1407 self.selBlocksize = blocksize
1408 self.selBlocktime = blocktime
1409
1410
1411 if not(self.setNextFile()):
1412 if (startDate!=None) and (endDate!=None):
1413 print "[Reading] No files in range: %s - %s" %(datetime.datetime.combine(startDate,startTime).ctime(), datetime.datetime.combine(endDate,endTime).ctime())
1414 elif startDate != None:
1415 print "[Reading] No files in range: %s" %(datetime.datetime.combine(startDate,startTime).ctime())
1416 else:
1417 print "[Reading] No files"
1418
1419 self.fileIndex = -1
1329 self.fileIndex = -1
1420 self.pathList = []
1330 self.pathList = pathList
1421 self.filenameList = []
1331 self.filenameList = filenameList
1422 return
1332 file_name = os.path.basename(filenameList[-1])
1333 basename, ext = os.path.splitext(file_name)
1334 last_set = int(basename[-3:])
1335
1336 self.online = online
1337 self.realtime = realtime
1338 self.delay = delay
1339 ext = ext.lower()
1340 self.ext = ext
1341 self.getByBlock = getblock
1342 self.nTxs = nTxs
1343 self.startTime = startTime
1344 self.endTime = endTime
1345
1346 #Added-----------------
1347 self.selBlocksize = blocksize
1348 self.selBlocktime = blocktime
1349
1350 # Verbose-----------
1351 self.verbose = verbose
1352 self.warnings = warnings
1353
1354 if not(self.setNextFile()):
1355 if (startDate!=None) and (endDate!=None):
1356 print "[Reading] No files in range: %s - %s" %(datetime.datetime.combine(startDate,startTime).ctime(), datetime.datetime.combine(endDate,endTime).ctime())
1357 elif startDate != None:
1358 print "[Reading] No files in range: %s" %(datetime.datetime.combine(startDate,startTime).ctime())
1359 else:
1360 print "[Reading] No files"
1423
1361
1424 # self.getBasicHeader()
1362 self.fileIndex = -1
1363 self.pathList = []
1364 self.filenameList = []
1365 return
1425
1366
1426 if last_set != None:
1367 # self.getBasicHeader()
1427 self.dataOut.last_block = last_set * self.processingHeaderObj.dataBlocksPerFile + self.basicHeaderObj.dataBlock
1368
1369 if last_set != None:
1370 self.dataOut.last_block = last_set * self.processingHeaderObj.dataBlocksPerFile + self.basicHeaderObj.dataBlock
1428 return
1371 return
1429
1372
1430 def getBasicHeader(self):
1373 def getBasicHeader(self):
1431
1374
1432 self.dataOut.utctime = self.basicHeaderObj.utc + self.basicHeaderObj.miliSecond/1000. + self.profileIndex * self.radarControllerHeaderObj.ippSeconds
1375 self.dataOut.utctime = self.basicHeaderObj.utc + self.basicHeaderObj.miliSecond/1000. + self.profileIndex * self.radarControllerHeaderObj.ippSeconds
1433
1376
1434 self.dataOut.flagDiscontinuousBlock = self.flagDiscontinuousBlock
1377 self.dataOut.flagDiscontinuousBlock = self.flagDiscontinuousBlock
1435
1378
1436 self.dataOut.timeZone = self.basicHeaderObj.timeZone
1379 self.dataOut.timeZone = self.basicHeaderObj.timeZone
1437
1380
1438 self.dataOut.dstFlag = self.basicHeaderObj.dstFlag
1381 self.dataOut.dstFlag = self.basicHeaderObj.dstFlag
1439
1382
1440 self.dataOut.errorCount = self.basicHeaderObj.errorCount
1383 self.dataOut.errorCount = self.basicHeaderObj.errorCount
1441
1384
1442 self.dataOut.useLocalTime = self.basicHeaderObj.useLocalTime
1385 self.dataOut.useLocalTime = self.basicHeaderObj.useLocalTime
1443
1386
1444 self.dataOut.ippSeconds = self.radarControllerHeaderObj.ippSeconds/self.nTxs
1387 self.dataOut.ippSeconds = self.radarControllerHeaderObj.ippSeconds/self.nTxs
1445
1388
1446 # self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock*self.nTxs
1389 # self.dataOut.nProfiles = self.processingHeaderObj.profilesPerBlock*self.nTxs
1447
1390
1448
1391
1449 def getFirstHeader(self):
1392 def getFirstHeader(self):
1450
1393
1451 raise NotImplementedError
1394 raise NotImplementedError
1452
1395
1453 def getData(self):
1396 def getData(self):
1454
1397
1455 raise NotImplementedError
1398 raise NotImplementedError
1456
1399
1457 def hasNotDataInBuffer(self):
1400 def hasNotDataInBuffer(self):
1458
1401
1459 raise NotImplementedError
1402 raise NotImplementedError
1460
1403
1461 def readBlock(self):
1404 def readBlock(self):
1462
1405
1463 raise NotImplementedError
1406 raise NotImplementedError
1464
1407
1465 def isEndProcess(self):
1408 def isEndProcess(self):
1466
1409
1467 return self.flagNoMoreFiles
1410 return self.flagNoMoreFiles
1468
1411
1469 def printReadBlocks(self):
1412 def printReadBlocks(self):
1470
1413
1471 print "[Reading] Number of read blocks per file %04d" %self.nReadBlocks
1414 print "[Reading] Number of read blocks per file %04d" %self.nReadBlocks
1472
1415
1473 def printTotalBlocks(self):
1416 def printTotalBlocks(self):
1474
1417
1475 print "[Reading] Number of read blocks %04d" %self.nTotalBlocks
1418 print "[Reading] Number of read blocks %04d" %self.nTotalBlocks
1476
1419
1477 def printNumberOfBlock(self):
1420 def printNumberOfBlock(self):
1478
1421
1479 if self.flagIsNewBlock:
1422 if self.flagIsNewBlock:
1480 print "[Reading] Block No. %d/%d -> %s" %(self.nReadBlocks,
1423 print "[Reading] Block No. %d/%d -> %s" %(self.nReadBlocks,
1481 self.processingHeaderObj.dataBlocksPerFile,
1424 self.processingHeaderObj.dataBlocksPerFile,
1482 self.dataOut.datatime.ctime())
1425 self.dataOut.datatime.ctime())
1483
1426
1484 def printInfo(self):
1427 def printInfo(self):
1485
1428
1486 if self.__printInfo == False:
1429 if self.__printInfo == False:
1487 return
1430 return
1488
1431
1489 self.basicHeaderObj.printInfo()
1432 self.basicHeaderObj.printInfo()
1490 self.systemHeaderObj.printInfo()
1433 self.systemHeaderObj.printInfo()
1491 self.radarControllerHeaderObj.printInfo()
1434 self.radarControllerHeaderObj.printInfo()
1492 self.processingHeaderObj.printInfo()
1435 self.processingHeaderObj.printInfo()
1493
1436
1494 self.__printInfo = False
1437 self.__printInfo = False
1495
1438
1496 def run(self,
1439 def run(self,
1497 path=None,
1440 path=None,
1498 startDate=None,
1441 startDate=None,
1499 endDate=None,
1442 endDate=None,
1500 startTime=datetime.time(0,0,0),
1443 startTime=datetime.time(0,0,0),
1501 endTime=datetime.time(23,59,59),
1444 endTime=datetime.time(23,59,59),
1502 set=None,
1445 set=None,
1503 expLabel = "",
1446 expLabel = "",
1504 ext = None,
1447 ext = None,
1505 online = False,
1448 online = False,
1506 delay = 60,
1449 delay = 60,
1507 walk = True,
1450 walk = True,
1508 getblock = False,
1451 getblock = False,
1509 nTxs = 1,
1452 nTxs = 1,
1510 realtime=False,
1453 realtime=False,
1511 blocksize=None,
1454 blocksize=None,
1512 blocktime=None,
1455 blocktime=None,
1513 queue=None,
1456 queue=None,
1514 skip=None,
1457 skip=None,
1515 cursor=None,
1458 cursor=None,
1516 warnings=True,
1459 warnings=True,
1517 server=None,
1460 server=None,
1518 verbose=True, **kwargs):
1461 verbose=True, **kwargs):
1519 if not(self.isConfig):
1462 if not(self.isConfig):
1520 # self.dataOut = dataOut
1463 self.setup(path=path,
1521 self.setup( path=path,
1464 startDate=startDate,
1522 startDate=startDate,
1465 endDate=endDate,
1523 endDate=endDate,
1466 startTime=startTime,
1524 startTime=startTime,
1467 endTime=endTime,
1525 endTime=endTime,
1468 set=set,
1526 set=set,
1469 expLabel=expLabel,
1527 expLabel=expLabel,
1470 ext=ext,
1528 ext=ext,
1471 online=online,
1529 online=online,
1472 delay=delay,
1530 delay=delay,
1473 walk=walk,
1531 walk=walk,
1474 getblock=getblock,
1532 getblock=getblock,
1475 nTxs=nTxs,
1533 nTxs=nTxs,
1476 realtime=realtime,
1534 realtime=realtime,
1477 blocksize=blocksize,
1535 blocksize=blocksize,
1478 blocktime=blocktime,
1536 blocktime=blocktime,
1479 skip=skip,
1537 queue=queue,
1480 cursor=cursor,
1538 skip=skip,
1481 warnings=warnings,
1539 cursor=cursor,
1482 server=server,
1540 warnings=warnings,
1483 verbose=verbose)
1541 server=server,
1542 verbose=verbose, **kwargs)
1543 self.isConfig = True
1484 self.isConfig = True
1544 if server is None:
1485 if server is None:
1545 self.getData()
1486 self.getData()
1546 else:
1487 else:
1547 self.getFromServer()
1488 self.getFromServer()
1548
1489
1549 class JRODataWriter(JRODataIO):
1490 class JRODataWriter(JRODataIO):
1550
1491
1551 """
1492 """
1552 Esta clase permite escribir datos a archivos procesados (.r o ,pdata). La escritura
1493 Esta clase permite escribir datos a archivos procesados (.r o ,pdata). La escritura
1553 de los datos siempre se realiza por bloques.
1494 de los datos siempre se realiza por bloques.
1554 """
1495 """
1555
1496
1556 blockIndex = 0
1497 blockIndex = 0
1557
1498
1558 path = None
1499 path = None
1559
1500
1560 setFile = None
1501 setFile = None
1561
1502
1562 profilesPerBlock = None
1503 profilesPerBlock = None
1563
1504
1564 blocksPerFile = None
1505 blocksPerFile = None
1565
1506
1566 nWriteBlocks = 0
1507 nWriteBlocks = 0
1567
1508
1568 fileDate = None
1509 fileDate = None
1569
1510
1570 def __init__(self, dataOut=None):
1511 def __init__(self, dataOut=None):
1571 raise NotImplementedError
1512 raise NotImplementedError
1572
1513
1573
1514
1574 def hasAllDataInBuffer(self):
1515 def hasAllDataInBuffer(self):
1575 raise NotImplementedError
1516 raise NotImplementedError
1576
1517
1577
1518
1578 def setBlockDimension(self):
1519 def setBlockDimension(self):
1579 raise NotImplementedError
1520 raise NotImplementedError
1580
1521
1581
1522
1582 def writeBlock(self):
1523 def writeBlock(self):
1583 raise NotImplementedError
1524 raise NotImplementedError
1584
1525
1585
1526
1586 def putData(self):
1527 def putData(self):
1587 raise NotImplementedError
1528 raise NotImplementedError
1588
1529
1589
1530
1590 def getProcessFlags(self):
1531 def getProcessFlags(self):
1591
1532
1592 processFlags = 0
1533 processFlags = 0
1593
1534
1594 dtype_index = get_dtype_index(self.dtype)
1535 dtype_index = get_dtype_index(self.dtype)
1595 procflag_dtype = get_procflag_dtype(dtype_index)
1536 procflag_dtype = get_procflag_dtype(dtype_index)
1596
1537
1597 processFlags += procflag_dtype
1538 processFlags += procflag_dtype
1598
1539
1599 if self.dataOut.flagDecodeData:
1540 if self.dataOut.flagDecodeData:
1600 processFlags += PROCFLAG.DECODE_DATA
1541 processFlags += PROCFLAG.DECODE_DATA
1601
1542
1602 if self.dataOut.flagDeflipData:
1543 if self.dataOut.flagDeflipData:
1603 processFlags += PROCFLAG.DEFLIP_DATA
1544 processFlags += PROCFLAG.DEFLIP_DATA
1604
1545
1605 if self.dataOut.code is not None:
1546 if self.dataOut.code is not None:
1606 processFlags += PROCFLAG.DEFINE_PROCESS_CODE
1547 processFlags += PROCFLAG.DEFINE_PROCESS_CODE
1607
1548
1608 if self.dataOut.nCohInt > 1:
1549 if self.dataOut.nCohInt > 1:
1609 processFlags += PROCFLAG.COHERENT_INTEGRATION
1550 processFlags += PROCFLAG.COHERENT_INTEGRATION
1610
1551
1611 if self.dataOut.type == "Spectra":
1552 if self.dataOut.type == "Spectra":
1612 if self.dataOut.nIncohInt > 1:
1553 if self.dataOut.nIncohInt > 1:
1613 processFlags += PROCFLAG.INCOHERENT_INTEGRATION
1554 processFlags += PROCFLAG.INCOHERENT_INTEGRATION
1614
1555
1615 if self.dataOut.data_dc is not None:
1556 if self.dataOut.data_dc is not None:
1616 processFlags += PROCFLAG.SAVE_CHANNELS_DC
1557 processFlags += PROCFLAG.SAVE_CHANNELS_DC
1617
1558
1618 if self.dataOut.flagShiftFFT:
1559 if self.dataOut.flagShiftFFT:
1619 processFlags += PROCFLAG.SHIFT_FFT_DATA
1560 processFlags += PROCFLAG.SHIFT_FFT_DATA
1620
1561
1621 return processFlags
1562 return processFlags
1622
1563
1623 def setBasicHeader(self):
1564 def setBasicHeader(self):
1624
1565
1625 self.basicHeaderObj.size = self.basicHeaderSize #bytes
1566 self.basicHeaderObj.size = self.basicHeaderSize #bytes
1626 self.basicHeaderObj.version = self.versionFile
1567 self.basicHeaderObj.version = self.versionFile
1627 self.basicHeaderObj.dataBlock = self.nTotalBlocks
1568 self.basicHeaderObj.dataBlock = self.nTotalBlocks
1628
1569
1629 utc = numpy.floor(self.dataOut.utctime)
1570 utc = numpy.floor(self.dataOut.utctime)
1630 milisecond = (self.dataOut.utctime - utc)* 1000.0
1571 milisecond = (self.dataOut.utctime - utc)* 1000.0
1631
1572
1632 self.basicHeaderObj.utc = utc
1573 self.basicHeaderObj.utc = utc
1633 self.basicHeaderObj.miliSecond = milisecond
1574 self.basicHeaderObj.miliSecond = milisecond
1634 self.basicHeaderObj.timeZone = self.dataOut.timeZone
1575 self.basicHeaderObj.timeZone = self.dataOut.timeZone
1635 self.basicHeaderObj.dstFlag = self.dataOut.dstFlag
1576 self.basicHeaderObj.dstFlag = self.dataOut.dstFlag
1636 self.basicHeaderObj.errorCount = self.dataOut.errorCount
1577 self.basicHeaderObj.errorCount = self.dataOut.errorCount
1637
1578
1638 def setFirstHeader(self):
1579 def setFirstHeader(self):
1639 """
1580 """
1640 Obtiene una copia del First Header
1581 Obtiene una copia del First Header
1641
1582
1642 Affected:
1583 Affected:
1643
1584
1644 self.basicHeaderObj
1585 self.basicHeaderObj
1645 self.systemHeaderObj
1586 self.systemHeaderObj
1646 self.radarControllerHeaderObj
1587 self.radarControllerHeaderObj
1647 self.processingHeaderObj self.
1588 self.processingHeaderObj self.
1648
1589
1649 Return:
1590 Return:
1650 None
1591 None
1651 """
1592 """
1652
1593
1653 raise NotImplementedError
1594 raise NotImplementedError
1654
1595
1655 def __writeFirstHeader(self):
1596 def __writeFirstHeader(self):
1656 """
1597 """
1657 Escribe el primer header del file es decir el Basic header y el Long header (SystemHeader, RadarControllerHeader, ProcessingHeader)
1598 Escribe el primer header del file es decir el Basic header y el Long header (SystemHeader, RadarControllerHeader, ProcessingHeader)
1658
1599
1659 Affected:
1600 Affected:
1660 __dataType
1601 __dataType
1661
1602
1662 Return:
1603 Return:
1663 None
1604 None
1664 """
1605 """
1665
1606
1666 # CALCULAR PARAMETROS
1607 # CALCULAR PARAMETROS
1667
1608
1668 sizeLongHeader = self.systemHeaderObj.size + self.radarControllerHeaderObj.size + self.processingHeaderObj.size
1609 sizeLongHeader = self.systemHeaderObj.size + self.radarControllerHeaderObj.size + self.processingHeaderObj.size
1669 self.basicHeaderObj.size = self.basicHeaderSize + sizeLongHeader
1610 self.basicHeaderObj.size = self.basicHeaderSize + sizeLongHeader
1670
1611
1671 self.basicHeaderObj.write(self.fp)
1612 self.basicHeaderObj.write(self.fp)
1672 self.systemHeaderObj.write(self.fp)
1613 self.systemHeaderObj.write(self.fp)
1673 self.radarControllerHeaderObj.write(self.fp)
1614 self.radarControllerHeaderObj.write(self.fp)
1674 self.processingHeaderObj.write(self.fp)
1615 self.processingHeaderObj.write(self.fp)
1675
1616
1676 def __setNewBlock(self):
1617 def __setNewBlock(self):
1677 """
1618 """
1678 Si es un nuevo file escribe el First Header caso contrario escribe solo el Basic Header
1619 Si es un nuevo file escribe el First Header caso contrario escribe solo el Basic Header
1679
1620
1680 Return:
1621 Return:
1681 0 : si no pudo escribir nada
1622 0 : si no pudo escribir nada
1682 1 : Si escribio el Basic el First Header
1623 1 : Si escribio el Basic el First Header
1683 """
1624 """
1684 if self.fp == None:
1625 if self.fp == None:
1685 self.setNextFile()
1626 self.setNextFile()
1686
1627
1687 if self.flagIsNewFile:
1628 if self.flagIsNewFile:
1688 return 1
1629 return 1
1689
1630
1690 if self.blockIndex < self.processingHeaderObj.dataBlocksPerFile:
1631 if self.blockIndex < self.processingHeaderObj.dataBlocksPerFile:
1691 self.basicHeaderObj.write(self.fp)
1632 self.basicHeaderObj.write(self.fp)
1692 return 1
1633 return 1
1693
1634
1694 if not( self.setNextFile() ):
1635 if not( self.setNextFile() ):
1695 return 0
1636 return 0
1696
1637
1697 return 1
1638 return 1
1698
1639
1699
1640
1700 def writeNextBlock(self):
1641 def writeNextBlock(self):
1701 """
1642 """
1702 Selecciona el bloque siguiente de datos y los escribe en un file
1643 Selecciona el bloque siguiente de datos y los escribe en un file
1703
1644
1704 Return:
1645 Return:
1705 0 : Si no hizo pudo escribir el bloque de datos
1646 0 : Si no hizo pudo escribir el bloque de datos
1706 1 : Si no pudo escribir el bloque de datos
1647 1 : Si no pudo escribir el bloque de datos
1707 """
1648 """
1708 if not( self.__setNewBlock() ):
1649 if not( self.__setNewBlock() ):
1709 return 0
1650 return 0
1710
1651
1711 self.writeBlock()
1652 self.writeBlock()
1712
1653
1713 print "[Writing] Block No. %d/%d" %(self.blockIndex,
1654 print "[Writing] Block No. %d/%d" %(self.blockIndex,
1714 self.processingHeaderObj.dataBlocksPerFile)
1655 self.processingHeaderObj.dataBlocksPerFile)
1715
1656
1716 return 1
1657 return 1
1717
1658
1718 def setNextFile(self):
1659 def setNextFile(self):
1719 """
1660 """
1720 Determina el siguiente file que sera escrito
1661 Determina el siguiente file que sera escrito
1721
1662
1722 Affected:
1663 Affected:
1723 self.filename
1664 self.filename
1724 self.subfolder
1665 self.subfolder
1725 self.fp
1666 self.fp
1726 self.setFile
1667 self.setFile
1727 self.flagIsNewFile
1668 self.flagIsNewFile
1728
1669
1729 Return:
1670 Return:
1730 0 : Si el archivo no puede ser escrito
1671 0 : Si el archivo no puede ser escrito
1731 1 : Si el archivo esta listo para ser escrito
1672 1 : Si el archivo esta listo para ser escrito
1732 """
1673 """
1733 ext = self.ext
1674 ext = self.ext
1734 path = self.path
1675 path = self.path
1735
1676
1736 if self.fp != None:
1677 if self.fp != None:
1737 self.fp.close()
1678 self.fp.close()
1738
1679
1739 timeTuple = time.localtime( self.dataOut.utctime)
1680 timeTuple = time.localtime( self.dataOut.utctime)
1740 subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday)
1681 subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday)
1741
1682
1742 fullpath = os.path.join( path, subfolder )
1683 fullpath = os.path.join( path, subfolder )
1743 setFile = self.setFile
1684 setFile = self.setFile
1744
1685
1745 if not( os.path.exists(fullpath) ):
1686 if not( os.path.exists(fullpath) ):
1746 os.mkdir(fullpath)
1687 os.mkdir(fullpath)
1747 setFile = -1 #inicializo mi contador de seteo
1688 setFile = -1 #inicializo mi contador de seteo
1748 else:
1689 else:
1749 filesList = os.listdir( fullpath )
1690 filesList = os.listdir( fullpath )
1750 if len( filesList ) > 0:
1691 if len( filesList ) > 0:
1751 filesList = sorted( filesList, key=str.lower )
1692 filesList = sorted( filesList, key=str.lower )
1752 filen = filesList[-1]
1693 filen = filesList[-1]
1753 # el filename debera tener el siguiente formato
1694 # el filename debera tener el siguiente formato
1754 # 0 1234 567 89A BCDE (hex)
1695 # 0 1234 567 89A BCDE (hex)
1755 # x YYYY DDD SSS .ext
1696 # x YYYY DDD SSS .ext
1756 if isNumber( filen[8:11] ):
1697 if isNumber( filen[8:11] ):
1757 setFile = int( filen[8:11] ) #inicializo mi contador de seteo al seteo del ultimo file
1698 setFile = int( filen[8:11] ) #inicializo mi contador de seteo al seteo del ultimo file
1758 else:
1699 else:
1759 setFile = -1
1700 setFile = -1
1760 else:
1701 else:
1761 setFile = -1 #inicializo mi contador de seteo
1702 setFile = -1 #inicializo mi contador de seteo
1762
1703
1763 setFile += 1
1704 setFile += 1
1764
1705
1765 #If this is a new day it resets some values
1706 #If this is a new day it resets some values
1766 if self.dataOut.datatime.date() > self.fileDate:
1707 if self.dataOut.datatime.date() > self.fileDate:
1767 setFile = 0
1708 setFile = 0
1768 self.nTotalBlocks = 0
1709 self.nTotalBlocks = 0
1769
1710
1770 filen = '%s%4.4d%3.3d%3.3d%s' % (self.optchar, timeTuple.tm_year, timeTuple.tm_yday, setFile, ext )
1711 filen = '%s%4.4d%3.3d%3.3d%s' % (self.optchar, timeTuple.tm_year, timeTuple.tm_yday, setFile, ext )
1771
1712
1772 filename = os.path.join( path, subfolder, filen )
1713 filename = os.path.join( path, subfolder, filen )
1773
1714
1774 fp = open( filename,'wb' )
1715 fp = open( filename,'wb' )
1775
1716
1776 self.blockIndex = 0
1717 self.blockIndex = 0
1777
1718
1778 #guardando atributos
1719 #guardando atributos
1779 self.filename = filename
1720 self.filename = filename
1780 self.subfolder = subfolder
1721 self.subfolder = subfolder
1781 self.fp = fp
1722 self.fp = fp
1782 self.setFile = setFile
1723 self.setFile = setFile
1783 self.flagIsNewFile = 1
1724 self.flagIsNewFile = 1
1784 self.fileDate = self.dataOut.datatime.date()
1725 self.fileDate = self.dataOut.datatime.date()
1785
1726
1786 self.setFirstHeader()
1727 self.setFirstHeader()
1787
1728
1788 print '[Writing] Opening file: %s'%self.filename
1729 print '[Writing] Opening file: %s'%self.filename
1789
1730
1790 self.__writeFirstHeader()
1731 self.__writeFirstHeader()
1791
1732
1792 return 1
1733 return 1
1793
1734
1794 def setup(self, dataOut, path, blocksPerFile, profilesPerBlock=64, set=None, ext=None, datatype=4, verbose=True):
1735 def setup(self, dataOut, path, blocksPerFile, profilesPerBlock=64, set=None, ext=None, datatype=4):
1795 """
1736 """
1796 Setea el tipo de formato en la cual sera guardada la data y escribe el First Header
1737 Setea el tipo de formato en la cual sera guardada la data y escribe el First Header
1797
1738
1798 Inputs:
1739 Inputs:
1799 path : directory where data will be saved
1740 path : directory where data will be saved
1800 profilesPerBlock : number of profiles per block
1741 profilesPerBlock : number of profiles per block
1801 set : initial file set
1742 set : initial file set
1802 datatype : An integer number that defines data type:
1743 datatype : An integer number that defines data type:
1803 0 : int8 (1 byte)
1744 0 : int8 (1 byte)
1804 1 : int16 (2 bytes)
1745 1 : int16 (2 bytes)
1805 2 : int32 (4 bytes)
1746 2 : int32 (4 bytes)
1806 3 : int64 (8 bytes)
1747 3 : int64 (8 bytes)
1807 4 : float32 (4 bytes)
1748 4 : float32 (4 bytes)
1808 5 : double64 (8 bytes)
1749 5 : double64 (8 bytes)
1809
1750
1810 Return:
1751 Return:
1811 0 : Si no realizo un buen seteo
1752 0 : Si no realizo un buen seteo
1812 1 : Si realizo un buen seteo
1753 1 : Si realizo un buen seteo
1813 """
1754 """
1814
1755
1815 if ext == None:
1756 if ext == None:
1816 ext = self.ext
1757 ext = self.ext
1817
1758
1818 self.ext = ext.lower()
1759 self.ext = ext.lower()
1819
1760
1820 self.path = path
1761 self.path = path
1821
1762
1822 if set is None:
1763 if set is None:
1823 self.setFile = -1
1764 self.setFile = -1
1824 else:
1765 else:
1825 self.setFile = set - 1
1766 self.setFile = set - 1
1826
1767
1827 self.blocksPerFile = blocksPerFile
1768 self.blocksPerFile = blocksPerFile
1828
1769
1829 self.profilesPerBlock = profilesPerBlock
1770 self.profilesPerBlock = profilesPerBlock
1830
1771
1831 self.dataOut = dataOut
1772 self.dataOut = dataOut
1832 self.fileDate = self.dataOut.datatime.date()
1773 self.fileDate = self.dataOut.datatime.date()
1833 #By default
1774 #By default
1834 self.dtype = self.dataOut.dtype
1775 self.dtype = self.dataOut.dtype
1835
1776
1836 if datatype is not None:
1777 if datatype is not None:
1837 self.dtype = get_numpy_dtype(datatype)
1778 self.dtype = get_numpy_dtype(datatype)
1838
1779
1839 if not(self.setNextFile()):
1780 if not(self.setNextFile()):
1840 print "[Writing] There isn't a next file"
1781 print "[Writing] There isn't a next file"
1841 return 0
1782 return 0
1842
1783
1843 self.setBlockDimension()
1784 self.setBlockDimension()
1844
1785
1845 return 1
1786 return 1
1846
1787
1847 def run(self, dataOut, path, blocksPerFile, profilesPerBlock=64, set=None, ext=None, datatype=4, **kwargs):
1788 def run(self, dataOut, path, blocksPerFile, profilesPerBlock=64, set=None, ext=None, datatype=4, **kwargs):
1848
1789
1849 if not(self.isConfig):
1790 if not(self.isConfig):
1850
1791
1851 self.setup(dataOut, path, blocksPerFile, profilesPerBlock=profilesPerBlock, set=set, ext=ext, datatype=datatype, **kwargs)
1792 self.setup(dataOut, path, blocksPerFile, profilesPerBlock=profilesPerBlock, set=set, ext=ext, datatype=datatype, **kwargs)
1852 self.isConfig = True
1793 self.isConfig = True
1853
1794
1854 self.putData()
1795 self.putData()
Show file before | Show file after | Hide comments
@@ -1,848 +1,848
1 '''
1 '''
2 Created on Jul 3, 2014
2 Created on Jul 3, 2014
3
3
4 @author: roj-idl71
4 @author: roj-idl71
5 '''
5 '''
6
6
7 import os, sys
7 import os, sys
8 import time, datetime
8 import time, datetime
9 import numpy
9 import numpy
10 import fnmatch
10 import fnmatch
11 import glob
11 import glob
12 from time import sleep
12 from time import sleep
13
13
14 try:
14 try:
15 import pyfits
15 import pyfits
16 except ImportError, e:
16 except ImportError, e:
17 print "Fits data cannot be used. Install pyfits module"
17 print "Fits data cannot be used. Install pyfits module"
18
18
19 from xml.etree.ElementTree import ElementTree
19 from xml.etree.ElementTree import ElementTree
20
20
21 from jroIO_base import isRadarFolder, isNumber
21 from jroIO_base import isRadarFolder, isNumber
22 from schainpy.model.data.jrodata import Fits
22 from schainpy.model.data.jrodata import Fits
23 from schainpy.model.proc.jroproc_base import Operation, ProcessingUnit
23 from schainpy.model.proc.jroproc_base import Operation, ProcessingUnit
24
24
25 class PyFits(object):
25 class PyFits(object):
26 name=None
26 name=None
27 format=None
27 format=None
28 array =None
28 array =None
29 data =None
29 data =None
30 thdulist=None
30 thdulist=None
31 prihdr=None
31 prihdr=None
32 hdu=None
32 hdu=None
33
33
34 def __init__(self):
34 def __init__(self):
35
35
36 pass
36 pass
37
37
38 def setColF(self,name,format,array):
38 def setColF(self,name,format,array):
39 self.name=name
39 self.name=name
40 self.format=format
40 self.format=format
41 self.array=array
41 self.array=array
42 a1=numpy.array([self.array],dtype=numpy.float32)
42 a1=numpy.array([self.array],dtype=numpy.float32)
43 self.col1 = pyfits.Column(name=self.name, format=self.format, array=a1)
43 self.col1 = pyfits.Column(name=self.name, format=self.format, array=a1)
44 return self.col1
44 return self.col1
45
45
46 # def setColP(self,name,format,data):
46 # def setColP(self,name,format,data):
47 # self.name=name
47 # self.name=name
48 # self.format=format
48 # self.format=format
49 # self.data=data
49 # self.data=data
50 # a2=numpy.array([self.data],dtype=numpy.float32)
50 # a2=numpy.array([self.data],dtype=numpy.float32)
51 # self.col2 = pyfits.Column(name=self.name, format=self.format, array=a2)
51 # self.col2 = pyfits.Column(name=self.name, format=self.format, array=a2)
52 # return self.col2
52 # return self.col2
53
53
54
54
55 def writeData(self,name,format,data):
55 def writeData(self,name,format,data):
56 self.name=name
56 self.name=name
57 self.format=format
57 self.format=format
58 self.data=data
58 self.data=data
59 a2=numpy.array([self.data],dtype=numpy.float32)
59 a2=numpy.array([self.data],dtype=numpy.float32)
60 self.col2 = pyfits.Column(name=self.name, format=self.format, array=a2)
60 self.col2 = pyfits.Column(name=self.name, format=self.format, array=a2)
61 return self.col2
61 return self.col2
62
62
63 def cFImage(self,idblock,year,month,day,hour,minute,second):
63 def cFImage(self,idblock,year,month,day,hour,minute,second):
64 self.hdu= pyfits.PrimaryHDU(idblock)
64 self.hdu= pyfits.PrimaryHDU(idblock)
65 self.hdu.header.set("Year",year)
65 self.hdu.header.set("Year",year)
66 self.hdu.header.set("Month",month)
66 self.hdu.header.set("Month",month)
67 self.hdu.header.set("Day",day)
67 self.hdu.header.set("Day",day)
68 self.hdu.header.set("Hour",hour)
68 self.hdu.header.set("Hour",hour)
69 self.hdu.header.set("Minute",minute)
69 self.hdu.header.set("Minute",minute)
70 self.hdu.header.set("Second",second)
70 self.hdu.header.set("Second",second)
71 return self.hdu
71 return self.hdu
72
72
73
73
74 def Ctable(self,colList):
74 def Ctable(self,colList):
75 self.cols=pyfits.ColDefs(colList)
75 self.cols=pyfits.ColDefs(colList)
76 self.tbhdu = pyfits.new_table(self.cols)
76 self.tbhdu = pyfits.new_table(self.cols)
77 return self.tbhdu
77 return self.tbhdu
78
78
79
79
80 def CFile(self,hdu,tbhdu):
80 def CFile(self,hdu,tbhdu):
81 self.thdulist=pyfits.HDUList([hdu,tbhdu])
81 self.thdulist=pyfits.HDUList([hdu,tbhdu])
82
82
83 def wFile(self,filename):
83 def wFile(self,filename):
84 if os.path.isfile(filename):
84 if os.path.isfile(filename):
85 os.remove(filename)
85 os.remove(filename)
86 self.thdulist.writeto(filename)
86 self.thdulist.writeto(filename)
87
87
88
88
89 class ParameterConf:
89 class ParameterConf:
90 ELEMENTNAME = 'Parameter'
90 ELEMENTNAME = 'Parameter'
91 def __init__(self):
91 def __init__(self):
92 self.name = ''
92 self.name = ''
93 self.value = ''
93 self.value = ''
94
94
95 def readXml(self, parmElement):
95 def readXml(self, parmElement):
96 self.name = parmElement.get('name')
96 self.name = parmElement.get('name')
97 self.value = parmElement.get('value')
97 self.value = parmElement.get('value')
98
98
99 def getElementName(self):
99 def getElementName(self):
100 return self.ELEMENTNAME
100 return self.ELEMENTNAME
101
101
102 class Metadata(object):
102 class Metadata(object):
103
103
104 def __init__(self, filename):
104 def __init__(self, filename):
105 self.parmConfObjList = []
105 self.parmConfObjList = []
106 self.readXml(filename)
106 self.readXml(filename)
107
107
108 def readXml(self, filename):
108 def readXml(self, filename):
109 self.projectElement = None
109 self.projectElement = None
110 self.procUnitConfObjDict = {}
110 self.procUnitConfObjDict = {}
111 self.projectElement = ElementTree().parse(filename)
111 self.projectElement = ElementTree().parse(filename)
112 self.project = self.projectElement.tag
112 self.project = self.projectElement.tag
113
113
114 parmElementList = self.projectElement.getiterator(ParameterConf().getElementName())
114 parmElementList = self.projectElement.getiterator(ParameterConf().getElementName())
115
115
116 for parmElement in parmElementList:
116 for parmElement in parmElementList:
117 parmConfObj = ParameterConf()
117 parmConfObj = ParameterConf()
118 parmConfObj.readXml(parmElement)
118 parmConfObj.readXml(parmElement)
119 self.parmConfObjList.append(parmConfObj)
119 self.parmConfObjList.append(parmConfObj)
120
120
121 class FitsWriter(Operation):
121 class FitsWriter(Operation):
122 def __init__(self, **kwargs):
122 def __init__(self, **kwargs):
123 Operation.__init__(self, **kwargs)
123 Operation.__init__(self, **kwargs)
124 self.isConfig = False
124 self.isConfig = False
125 self.dataBlocksPerFile = None
125 self.dataBlocksPerFile = None
126 self.blockIndex = 0
126 self.blockIndex = 0
127 self.flagIsNewFile = 1
127 self.flagIsNewFile = 1
128 self.fitsObj = None
128 self.fitsObj = None
129 self.optchar = 'P'
129 self.optchar = 'P'
130 self.ext = '.fits'
130 self.ext = '.fits'
131 self.setFile = 0
131 self.setFile = 0
132
132
133 def setFitsHeader(self, dataOut, metadatafile=None):
133 def setFitsHeader(self, dataOut, metadatafile=None):
134
134
135 header_data = pyfits.PrimaryHDU()
135 header_data = pyfits.PrimaryHDU()
136
136
137 header_data.header['EXPNAME'] = "RADAR DATA"
137 header_data.header['EXPNAME'] = "RADAR DATA"
138 header_data.header['DATATYPE'] = "SPECTRA"
138 header_data.header['DATATYPE'] = "SPECTRA"
139 header_data.header['COMMENT'] = ""
139 header_data.header['COMMENT'] = ""
140
140
141 if metadatafile:
141 if metadatafile:
142
142
143 metadata4fits = Metadata(metadatafile)
143 metadata4fits = Metadata(metadatafile)
144
144
145 for parameter in metadata4fits.parmConfObjList:
145 for parameter in metadata4fits.parmConfObjList:
146 parm_name = parameter.name
146 parm_name = parameter.name
147 parm_value = parameter.value
147 parm_value = parameter.value
148
148
149 header_data.header[parm_name] = parm_value
149 header_data.header[parm_name] = parm_value
150
150
151 header_data.header['DATETIME'] = time.strftime("%b %d %Y %H:%M:%S", dataOut.datatime.timetuple())
151 header_data.header['DATETIME'] = time.strftime("%b %d %Y %H:%M:%S", dataOut.datatime.timetuple())
152 header_data.header['CHANNELLIST'] = str(dataOut.channelList)
152 header_data.header['CHANNELLIST'] = str(dataOut.channelList)
153 header_data.header['NCHANNELS'] = dataOut.nChannels
153 header_data.header['NCHANNELS'] = dataOut.nChannels
154 #header_data.header['HEIGHTS'] = dataOut.heightList
154 #header_data.header['HEIGHTS'] = dataOut.heightList
155 header_data.header['NHEIGHTS'] = dataOut.nHeights
155 header_data.header['NHEIGHTS'] = dataOut.nHeights
156
156
157 header_data.header['IPPSECONDS'] = dataOut.ippSeconds
157 header_data.header['IPPSECONDS'] = dataOut.ippSeconds
158 header_data.header['NCOHINT'] = dataOut.nCohInt
158 header_data.header['NCOHINT'] = dataOut.nCohInt
159 header_data.header['NINCOHINT'] = dataOut.nIncohInt
159 header_data.header['NINCOHINT'] = dataOut.nIncohInt
160 header_data.header['TIMEZONE'] = dataOut.timeZone
160 header_data.header['TIMEZONE'] = dataOut.timeZone
161 header_data.header['NBLOCK'] = self.blockIndex
161 header_data.header['NBLOCK'] = self.blockIndex
162
162
163 header_data.writeto(self.filename)
163 header_data.writeto(self.filename)
164
164
165 self.addExtension(dataOut.heightList,'HEIGHTLIST')
165 self.addExtension(dataOut.heightList,'HEIGHTLIST')
166
166
167
167
168 def setup(self, dataOut, path, dataBlocksPerFile=100, metadatafile=None):
168 def setup(self, dataOut, path, dataBlocksPerFile=100, metadatafile=None):
169
169
170 self.path = path
170 self.path = path
171 self.dataOut = dataOut
171 self.dataOut = dataOut
172 self.metadatafile = metadatafile
172 self.metadatafile = metadatafile
173 self.dataBlocksPerFile = dataBlocksPerFile
173 self.dataBlocksPerFile = dataBlocksPerFile
174
174
175 def open(self):
175 def open(self):
176 self.fitsObj = pyfits.open(self.filename, mode='update')
176 self.fitsObj = pyfits.open(self.filename, mode='update')
177
177
178
178
179 def addExtension(self, data, tagname):
179 def addExtension(self, data, tagname):
180 self.open()
180 self.open()
181 extension = pyfits.ImageHDU(data=data, name=tagname)
181 extension = pyfits.ImageHDU(data=data, name=tagname)
182 #extension.header['TAG'] = tagname
182 #extension.header['TAG'] = tagname
183 self.fitsObj.append(extension)
183 self.fitsObj.append(extension)
184 self.write()
184 self.write()
185
185
186 def addData(self, data):
186 def addData(self, data):
187 self.open()
187 self.open()
188 extension = pyfits.ImageHDU(data=data, name=self.fitsObj[0].header['DATATYPE'])
188 extension = pyfits.ImageHDU(data=data, name=self.fitsObj[0].header['DATATYPE'])
189 extension.header['UTCTIME'] = self.dataOut.utctime
189 extension.header['UTCTIME'] = self.dataOut.utctime
190 self.fitsObj.append(extension)
190 self.fitsObj.append(extension)
191 self.blockIndex += 1
191 self.blockIndex += 1
192 self.fitsObj[0].header['NBLOCK'] = self.blockIndex
192 self.fitsObj[0].header['NBLOCK'] = self.blockIndex
193
193
194 self.write()
194 self.write()
195
195
196 def write(self):
196 def write(self):
197
197
198 self.fitsObj.flush(verbose=True)
198 self.fitsObj.flush(verbose=True)
199 self.fitsObj.close()
199 self.fitsObj.close()
200
200
201
201
202 def setNextFile(self):
202 def setNextFile(self):
203
203
204 ext = self.ext
204 ext = self.ext
205 path = self.path
205 path = self.path
206
206
207 timeTuple = time.localtime( self.dataOut.utctime)
207 timeTuple = time.localtime( self.dataOut.utctime)
208 subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday)
208 subfolder = 'd%4.4d%3.3d' % (timeTuple.tm_year,timeTuple.tm_yday)
209
209
210 fullpath = os.path.join( path, subfolder )
210 fullpath = os.path.join( path, subfolder )
211 if not( os.path.exists(fullpath) ):
211 if not( os.path.exists(fullpath) ):
212 os.mkdir(fullpath)
212 os.mkdir(fullpath)
213 self.setFile = -1 #inicializo mi contador de seteo
213 self.setFile = -1 #inicializo mi contador de seteo
214 else:
214 else:
215 filesList = os.listdir( fullpath )
215 filesList = os.listdir( fullpath )
216 if len( filesList ) > 0:
216 if len( filesList ) > 0:
217 filesList = sorted( filesList, key=str.lower )
217 filesList = sorted( filesList, key=str.lower )
218 filen = filesList[-1]
218 filen = filesList[-1]
219
219
220 if isNumber( filen[8:11] ):
220 if isNumber( filen[8:11] ):
221 self.setFile = int( filen[8:11] ) #inicializo mi contador de seteo al seteo del ultimo file
221 self.setFile = int( filen[8:11] ) #inicializo mi contador de seteo al seteo del ultimo file
222 else:
222 else:
223 self.setFile = -1
223 self.setFile = -1
224 else:
224 else:
225 self.setFile = -1 #inicializo mi contador de seteo
225 self.setFile = -1 #inicializo mi contador de seteo
226
226
227 setFile = self.setFile
227 setFile = self.setFile
228 setFile += 1
228 setFile += 1
229
229
230 thisFile = '%s%4.4d%3.3d%3.3d%s' % (self.optchar,
230 thisFile = '%s%4.4d%3.3d%3.3d%s' % (self.optchar,
231 timeTuple.tm_year,
231 timeTuple.tm_year,
232 timeTuple.tm_yday,
232 timeTuple.tm_yday,
233 setFile,
233 setFile,
234 ext )
234 ext )
235
235
236 filename = os.path.join( path, subfolder, thisFile )
236 filename = os.path.join( path, subfolder, thisFile )
237
237
238 self.blockIndex = 0
238 self.blockIndex = 0
239 self.filename = filename
239 self.filename = filename
240 self.setFile = setFile
240 self.setFile = setFile
241 self.flagIsNewFile = 1
241 self.flagIsNewFile = 1
242
242
243 print 'Writing the file: %s'%self.filename
243 print 'Writing the file: %s'%self.filename
244
244
245 self.setFitsHeader(self.dataOut, self.metadatafile)
245 self.setFitsHeader(self.dataOut, self.metadatafile)
246
246
247 return 1
247 return 1
248
248
249 def writeBlock(self):
249 def writeBlock(self):
250 self.addData(self.dataOut.data_spc)
250 self.addData(self.dataOut.data_spc)
251 self.flagIsNewFile = 0
251 self.flagIsNewFile = 0
252
252
253
253
254 def __setNewBlock(self):
254 def __setNewBlock(self):
255
255
256 if self.flagIsNewFile:
256 if self.flagIsNewFile:
257 return 1
257 return 1
258
258
259 if self.blockIndex < self.dataBlocksPerFile:
259 if self.blockIndex < self.dataBlocksPerFile:
260 return 1
260 return 1
261
261
262 if not( self.setNextFile() ):
262 if not( self.setNextFile() ):
263 return 0
263 return 0
264
264
265 return 1
265 return 1
266
266
267 def writeNextBlock(self):
267 def writeNextBlock(self):
268 if not( self.__setNewBlock() ):
268 if not( self.__setNewBlock() ):
269 return 0
269 return 0
270 self.writeBlock()
270 self.writeBlock()
271 return 1
271 return 1
272
272
273 def putData(self):
273 def putData(self):
274 if self.flagIsNewFile:
274 if self.flagIsNewFile:
275 self.setNextFile()
275 self.setNextFile()
276 self.writeNextBlock()
276 self.writeNextBlock()
277
277
278 def run(self, dataOut, path, dataBlocksPerFile=100, metadatafile=None, **kwargs):
278 def run(self, dataOut, path, dataBlocksPerFile=100, metadatafile=None, **kwargs):
279 if not(self.isConfig):
279 if not(self.isConfig):
280 self.setup(dataOut, path, dataBlocksPerFile=dataBlocksPerFile, metadatafile=metadatafile, **kwargs)
280 self.setup(dataOut, path, dataBlocksPerFile=dataBlocksPerFile, metadatafile=metadatafile, **kwargs)
281 self.isConfig = True
281 self.isConfig = True
282 self.putData()
282 self.putData()
283
283
284
284
285 class FitsReader(ProcessingUnit):
285 class FitsReader(ProcessingUnit):
286
286
287 # __TIMEZONE = time.timezone
287 # __TIMEZONE = time.timezone
288
288
289 expName = None
289 expName = None
290 datetimestr = None
290 datetimestr = None
291 utc = None
291 utc = None
292 nChannels = None
292 nChannels = None
293 nSamples = None
293 nSamples = None
294 dataBlocksPerFile = None
294 dataBlocksPerFile = None
295 comments = None
295 comments = None
296 lastUTTime = None
296 lastUTTime = None
297 header_dict = None
297 header_dict = None
298 data = None
298 data = None
299 data_header_dict = None
299 data_header_dict = None
300
300
301 def __init__(self, **kwargs):
301 def __init__(self, **kwargs):
302 ProcessingUnit.__init__(self, **kwargs)
302 ProcessingUnit.__init__(self, **kwargs)
303 self.isConfig = False
303 self.isConfig = False
304 self.ext = '.fits'
304 self.ext = '.fits'
305 self.setFile = 0
305 self.setFile = 0
306 self.flagNoMoreFiles = 0
306 self.flagNoMoreFiles = 0
307 self.flagIsNewFile = 1
307 self.flagIsNewFile = 1
308 self.flagDiscontinuousBlock = None
308 self.flagDiscontinuousBlock = None
309 self.fileIndex = None
309 self.fileIndex = None
310 self.filename = None
310 self.filename = None
311 self.fileSize = None
311 self.fileSize = None
312 self.fitsObj = None
312 self.fitsObj = None
313 self.timeZone = None
313 self.timeZone = None
314 self.nReadBlocks = 0
314 self.nReadBlocks = 0
315 self.nTotalBlocks = 0
315 self.nTotalBlocks = 0
316 self.dataOut = self.createObjByDefault()
316 self.dataOut = self.createObjByDefault()
317 self.maxTimeStep = 10# deberia ser definido por el usuario usando el metodo setup()
317 self.maxTimeStep = 10# deberia ser definido por el usuario usando el metodo setup()
318 self.blockIndex = 1
318 self.blockIndex = 1
319
319
320 def createObjByDefault(self):
320 def createObjByDefault(self):
321
321
322 dataObj = Fits()
322 dataObj = Fits()
323
323
324 return dataObj
324 return dataObj
325
325
326 def isFileinThisTime(self, filename, startTime, endTime, useLocalTime=False):
326 def isFileinThisTime(self, filename, startTime, endTime, useLocalTime=False):
327 try:
327 try:
328 fitsObj = pyfits.open(filename,'readonly')
328 fitsObj = pyfits.open(filename,'readonly')
329 except:
329 except:
330 print "File %s can't be opened" %(filename)
330 print "File %s can't be opened" %(filename)
331 return None
331 return None
332
332
333 header = fitsObj[0].header
333 header = fitsObj[0].header
334 struct_time = time.strptime(header['DATETIME'], "%b %d %Y %H:%M:%S")
334 struct_time = time.strptime(header['DATETIME'], "%b %d %Y %H:%M:%S")
335 utc = time.mktime(struct_time) - time.timezone #TIMEZONE debe ser un parametro del header FITS
335 utc = time.mktime(struct_time) - time.timezone #TIMEZONE debe ser un parametro del header FITS
336
336
337 ltc = utc
337 ltc = utc
338 if useLocalTime:
338 if useLocalTime:
339 ltc -= time.timezone
339 ltc -= time.timezone
340 thisDatetime = datetime.datetime.utcfromtimestamp(ltc)
340 thisDatetime = datetime.datetime.utcfromtimestamp(ltc)
341 thisTime = thisDatetime.time()
341 thisTime = thisDatetime.time()
342
342
343 if not ((startTime <= thisTime) and (endTime > thisTime)):
343 if not ((startTime <= thisTime) and (endTime > thisTime)):
344 return None
344 return None
345
345
346 return thisDatetime
346 return thisDatetime
347
347
348 def __setNextFileOnline(self):
348 def __setNextFileOnline(self):
349 raise NotImplementedError
349 raise NotImplementedError
350
350
351 def __setNextFileOffline(self):
351 def __setNextFileOffline(self):
352 idFile = self.fileIndex
352 idFile = self.fileIndex
353
353
354 while (True):
354 while (True):
355 idFile += 1
355 idFile += 1
356 if not(idFile < len(self.filenameList)):
356 if not(idFile < len(self.filenameList)):
357 self.flagNoMoreFiles = 1
357 self.flagNoMoreFiles = 1
358 print "No more Files"
358 print "No more Files"
359 return 0
359 return 0
360
360
361 filename = self.filenameList[idFile]
361 filename = self.filenameList[idFile]
362
362
363 # if not(self.__verifyFile(filename)):
363 # if not(self.__verifyFile(filename)):
364 # continue
364 # continue
365
365
366 fileSize = os.path.getsize(filename)
366 fileSize = os.path.getsize(filename)
367 fitsObj = pyfits.open(filename,'readonly')
367 fitsObj = pyfits.open(filename,'readonly')
368 break
368 break
369
369
370 self.flagIsNewFile = 1
370 self.flagIsNewFile = 1
371 self.fileIndex = idFile
371 self.fileIndex = idFile
372 self.filename = filename
372 self.filename = filename
373 self.fileSize = fileSize
373 self.fileSize = fileSize
374 self.fitsObj = fitsObj
374 self.fitsObj = fitsObj
375 self.blockIndex = 0
375 self.blockIndex = 0
376 print "Setting the file: %s"%self.filename
376 print "Setting the file: %s"%self.filename
377
377
378 return 1
378 return 1
379
379
380 def __setValuesFromHeader(self):
380 def __setValuesFromHeader(self):
381
381
382 self.dataOut.header = self.header_dict
382 self.dataOut.header = self.header_dict
383 self.dataOut.expName = self.expName
383 self.dataOut.expName = self.expName
384
384
385 self.dataOut.timeZone = self.timeZone
385 self.dataOut.timeZone = self.timeZone
386 self.dataOut.dataBlocksPerFile = self.dataBlocksPerFile
386 self.dataOut.dataBlocksPerFile = self.dataBlocksPerFile
387 self.dataOut.comments = self.comments
387 self.dataOut.comments = self.comments
388 # self.dataOut.timeInterval = self.timeInterval
388 # self.dataOut.timeInterval = self.timeInterval
389 self.dataOut.channelList = self.channelList
389 self.dataOut.channelList = self.channelList
390 self.dataOut.heightList = self.heightList
390 self.dataOut.heightList = self.heightList
391
391
392 self.dataOut.nCohInt = self.nCohInt
392 self.dataOut.nCohInt = self.nCohInt
393 self.dataOut.nIncohInt = self.nIncohInt
393 self.dataOut.nIncohInt = self.nIncohInt
394
394
395 self.dataOut.ippSeconds = self.ippSeconds
395 self.dataOut.ippSeconds = self.ippSeconds
396
396
397 def readHeader(self):
397 def readHeader(self):
398 headerObj = self.fitsObj[0]
398 headerObj = self.fitsObj[0]
399
399
400 self.header_dict = headerObj.header
400 self.header_dict = headerObj.header
401 if 'EXPNAME' in headerObj.header.keys():
401 if 'EXPNAME' in headerObj.header.keys():
402 self.expName = headerObj.header['EXPNAME']
402 self.expName = headerObj.header['EXPNAME']
403
403
404 if 'DATATYPE' in headerObj.header.keys():
404 if 'DATATYPE' in headerObj.header.keys():
405 self.dataType = headerObj.header['DATATYPE']
405 self.dataType = headerObj.header['DATATYPE']
406
406
407 self.datetimestr = headerObj.header['DATETIME']
407 self.datetimestr = headerObj.header['DATETIME']
408 channelList = headerObj.header['CHANNELLIST']
408 channelList = headerObj.header['CHANNELLIST']
409 channelList = channelList.split('[')
409 channelList = channelList.split('[')
410 channelList = channelList[1].split(']')
410 channelList = channelList[1].split(']')
411 channelList = channelList[0].split(',')
411 channelList = channelList[0].split(',')
412 channelList = [int(ch) for ch in channelList]
412 channelList = [int(ch) for ch in channelList]
413 self.channelList = channelList
413 self.channelList = channelList
414 self.nChannels = headerObj.header['NCHANNELS']
414 self.nChannels = headerObj.header['NCHANNELS']
415 self.nHeights = headerObj.header['NHEIGHTS']
415 self.nHeights = headerObj.header['NHEIGHTS']
416 self.ippSeconds = headerObj.header['IPPSECONDS']
416 self.ippSeconds = headerObj.header['IPPSECONDS']
417 self.nCohInt = headerObj.header['NCOHINT']
417 self.nCohInt = headerObj.header['NCOHINT']
418 self.nIncohInt = headerObj.header['NINCOHINT']
418 self.nIncohInt = headerObj.header['NINCOHINT']
419 self.dataBlocksPerFile = headerObj.header['NBLOCK']
419 self.dataBlocksPerFile = headerObj.header['NBLOCK']
420 self.timeZone = headerObj.header['TIMEZONE']
420 self.timeZone = headerObj.header['TIMEZONE']
421
421
422 # self.timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt
422 # self.timeInterval = self.ippSeconds * self.nCohInt * self.nIncohInt
423
423
424 if 'COMMENT' in headerObj.header.keys():
424 if 'COMMENT' in headerObj.header.keys():
425 self.comments = headerObj.header['COMMENT']
425 self.comments = headerObj.header['COMMENT']
426
426
427 self.readHeightList()
427 self.readHeightList()
428
428
429 def readHeightList(self):
429 def readHeightList(self):
430 self.blockIndex = self.blockIndex + 1
430 self.blockIndex = self.blockIndex + 1
431 obj = self.fitsObj[self.blockIndex]
431 obj = self.fitsObj[self.blockIndex]
432 self.heightList = obj.data
432 self.heightList = obj.data
433 self.blockIndex = self.blockIndex + 1
433 self.blockIndex = self.blockIndex + 1
434
434
435 def readExtension(self):
435 def readExtension(self):
436 obj = self.fitsObj[self.blockIndex]
436 obj = self.fitsObj[self.blockIndex]
437 self.heightList = obj.data
437 self.heightList = obj.data
438 self.blockIndex = self.blockIndex + 1
438 self.blockIndex = self.blockIndex + 1
439
439
440 def setNextFile(self):
440 def setNextFile(self):
441
441
442 if self.online:
442 if self.online:
443 newFile = self.__setNextFileOnline()
443 newFile = self.__setNextFileOnline()
444 else:
444 else:
445 newFile = self.__setNextFileOffline()
445 newFile = self.__setNextFileOffline()
446
446
447 if not(newFile):
447 if not(newFile):
448 return 0
448 return 0
449
449
450 self.readHeader()
450 self.readHeader()
451 self.__setValuesFromHeader()
451 self.__setValuesFromHeader()
452 self.nReadBlocks = 0
452 self.nReadBlocks = 0
453 # self.blockIndex = 1
453 # self.blockIndex = 1
454 return 1
454 return 1
455
455
456 def __searchFilesOffLine(self,
456 def searchFilesOffLine(self,
457 path,
457 path,
458 startDate,
458 startDate,
459 endDate,
459 endDate,
460 startTime=datetime.time(0,0,0),
460 startTime=datetime.time(0,0,0),
461 endTime=datetime.time(23,59,59),
461 endTime=datetime.time(23,59,59),
462 set=None,
462 set=None,
463 expLabel='',
463 expLabel='',
464 ext='.fits',
464 ext='.fits',
465 walk=True):
465 walk=True):
466
466
467 pathList = []
467 pathList = []
468
468
469 if not walk:
469 if not walk:
470 pathList.append(path)
470 pathList.append(path)
471
471
472 else:
472 else:
473 dirList = []
473 dirList = []
474 for thisPath in os.listdir(path):
474 for thisPath in os.listdir(path):
475 if not os.path.isdir(os.path.join(path,thisPath)):
475 if not os.path.isdir(os.path.join(path,thisPath)):
476 continue
476 continue
477 if not isRadarFolder(thisPath):
477 if not isRadarFolder(thisPath):
478 continue
478 continue
479
479
480 dirList.append(thisPath)
480 dirList.append(thisPath)
481
481
482 if not(dirList):
482 if not(dirList):
483 return None, None
483 return None, None
484
484
485 thisDate = startDate
485 thisDate = startDate
486
486
487 while(thisDate <= endDate):
487 while(thisDate <= endDate):
488 year = thisDate.timetuple().tm_year
488 year = thisDate.timetuple().tm_year
489 doy = thisDate.timetuple().tm_yday
489 doy = thisDate.timetuple().tm_yday
490
490
491 matchlist = fnmatch.filter(dirList, '?' + '%4.4d%3.3d' % (year,doy) + '*')
491 matchlist = fnmatch.filter(dirList, '?' + '%4.4d%3.3d' % (year,doy) + '*')
492 if len(matchlist) == 0:
492 if len(matchlist) == 0:
493 thisDate += datetime.timedelta(1)
493 thisDate += datetime.timedelta(1)
494 continue
494 continue
495 for match in matchlist:
495 for match in matchlist:
496 pathList.append(os.path.join(path,match,expLabel))
496 pathList.append(os.path.join(path,match,expLabel))
497
497
498 thisDate += datetime.timedelta(1)
498 thisDate += datetime.timedelta(1)
499
499
500 if pathList == []:
500 if pathList == []:
501 print "Any folder was found for the date range: %s-%s" %(startDate, endDate)
501 print "Any folder was found for the date range: %s-%s" %(startDate, endDate)
502 return None, None
502 return None, None
503
503
504 print "%d folder(s) was(were) found for the date range: %s - %s" %(len(pathList), startDate, endDate)
504 print "%d folder(s) was(were) found for the date range: %s - %s" %(len(pathList), startDate, endDate)
505
505
506 filenameList = []
506 filenameList = []
507 datetimeList = []
507 datetimeList = []
508
508
509 for i in range(len(pathList)):
509 for i in range(len(pathList)):
510
510
511 thisPath = pathList[i]
511 thisPath = pathList[i]
512
512
513 fileList = glob.glob1(thisPath, "*%s" %ext)
513 fileList = glob.glob1(thisPath, "*%s" %ext)
514 fileList.sort()
514 fileList.sort()
515
515
516 for thisFile in fileList:
516 for thisFile in fileList:
517
517
518 filename = os.path.join(thisPath,thisFile)
518 filename = os.path.join(thisPath,thisFile)
519 thisDatetime = self.isFileinThisTime(filename, startTime, endTime)
519 thisDatetime = self.isFileinThisTime(filename, startTime, endTime)
520
520
521 if not(thisDatetime):
521 if not(thisDatetime):
522 continue
522 continue
523
523
524 filenameList.append(filename)
524 filenameList.append(filename)
525 datetimeList.append(thisDatetime)
525 datetimeList.append(thisDatetime)
526
526
527 if not(filenameList):
527 if not(filenameList):
528 print "Any file was found for the time range %s - %s" %(startTime, endTime)
528 print "Any file was found for the time range %s - %s" %(startTime, endTime)
529 return None, None
529 return None, None
530
530
531 print "%d file(s) was(were) found for the time range: %s - %s" %(len(filenameList), startTime, endTime)
531 print "%d file(s) was(were) found for the time range: %s - %s" %(len(filenameList), startTime, endTime)
532 print
532 print
533
533
534 for i in range(len(filenameList)):
534 for i in range(len(filenameList)):
535 print "%s -> [%s]" %(filenameList[i], datetimeList[i].ctime())
535 print "%s -> [%s]" %(filenameList[i], datetimeList[i].ctime())
536
536
537 self.filenameList = filenameList
537 self.filenameList = filenameList
538 self.datetimeList = datetimeList
538 self.datetimeList = datetimeList
539
539
540 return pathList, filenameList
540 return pathList, filenameList
541
541
542 def setup(self, path=None,
542 def setup(self, path=None,
543 startDate=None,
543 startDate=None,
544 endDate=None,
544 endDate=None,
545 startTime=datetime.time(0,0,0),
545 startTime=datetime.time(0,0,0),
546 endTime=datetime.time(23,59,59),
546 endTime=datetime.time(23,59,59),
547 set=0,
547 set=0,
548 expLabel = "",
548 expLabel = "",
549 ext = None,
549 ext = None,
550 online = False,
550 online = False,
551 delay = 60,
551 delay = 60,
552 walk = True):
552 walk = True):
553
553
554 if path == None:
554 if path == None:
555 raise ValueError, "The path is not valid"
555 raise ValueError, "The path is not valid"
556
556
557 if ext == None:
557 if ext == None:
558 ext = self.ext
558 ext = self.ext
559
559
560 if not(online):
560 if not(online):
561 print "Searching files in offline mode ..."
561 print "Searching files in offline mode ..."
562 pathList, filenameList = self.__searchFilesOffLine(path, startDate=startDate, endDate=endDate,
562 pathList, filenameList = self.searchFilesOffLine(path, startDate=startDate, endDate=endDate,
563 startTime=startTime, endTime=endTime,
563 startTime=startTime, endTime=endTime,
564 set=set, expLabel=expLabel, ext=ext,
564 set=set, expLabel=expLabel, ext=ext,
565 walk=walk)
565 walk=walk)
566
566
567 if not(pathList):
567 if not(pathList):
568 print "No *%s files into the folder %s \nfor the range: %s - %s"%(ext, path,
568 print "No *%s files into the folder %s \nfor the range: %s - %s"%(ext, path,
569 datetime.datetime.combine(startDate,startTime).ctime(),
569 datetime.datetime.combine(startDate,startTime).ctime(),
570 datetime.datetime.combine(endDate,endTime).ctime())
570 datetime.datetime.combine(endDate,endTime).ctime())
571
571
572 sys.exit(-1)
572 sys.exit(-1)
573
573
574 self.fileIndex = -1
574 self.fileIndex = -1
575 self.pathList = pathList
575 self.pathList = pathList
576 self.filenameList = filenameList
576 self.filenameList = filenameList
577
577
578 self.online = online
578 self.online = online
579 self.delay = delay
579 self.delay = delay
580 ext = ext.lower()
580 ext = ext.lower()
581 self.ext = ext
581 self.ext = ext
582
582
583 if not(self.setNextFile()):
583 if not(self.setNextFile()):
584 if (startDate!=None) and (endDate!=None):
584 if (startDate!=None) and (endDate!=None):
585 print "No files in range: %s - %s" %(datetime.datetime.combine(startDate,startTime).ctime(), datetime.datetime.combine(endDate,endTime).ctime())
585 print "No files in range: %s - %s" %(datetime.datetime.combine(startDate,startTime).ctime(), datetime.datetime.combine(endDate,endTime).ctime())
586 elif startDate != None:
586 elif startDate != None:
587 print "No files in range: %s" %(datetime.datetime.combine(startDate,startTime).ctime())
587 print "No files in range: %s" %(datetime.datetime.combine(startDate,startTime).ctime())
588 else:
588 else:
589 print "No files"
589 print "No files"
590
590
591 sys.exit(-1)
591 sys.exit(-1)
592
592
593
593
594
594
595 def readBlock(self):
595 def readBlock(self):
596 dataObj = self.fitsObj[self.blockIndex]
596 dataObj = self.fitsObj[self.blockIndex]
597
597
598 self.data = dataObj.data
598 self.data = dataObj.data
599 self.data_header_dict = dataObj.header
599 self.data_header_dict = dataObj.header
600 self.utc = self.data_header_dict['UTCTIME']
600 self.utc = self.data_header_dict['UTCTIME']
601
601
602 self.flagIsNewFile = 0
602 self.flagIsNewFile = 0
603 self.blockIndex += 1
603 self.blockIndex += 1
604 self.nTotalBlocks += 1
604 self.nTotalBlocks += 1
605 self.nReadBlocks += 1
605 self.nReadBlocks += 1
606
606
607 return 1
607 return 1
608
608
609 def __jumpToLastBlock(self):
609 def __jumpToLastBlock(self):
610 raise NotImplementedError
610 raise NotImplementedError
611
611
612 def __waitNewBlock(self):
612 def __waitNewBlock(self):
613 """
613 """
614 Return 1 si se encontro un nuevo bloque de datos, 0 de otra forma.
614 Return 1 si se encontro un nuevo bloque de datos, 0 de otra forma.
615
615
616 Si el modo de lectura es OffLine siempre retorn 0
616 Si el modo de lectura es OffLine siempre retorn 0
617 """
617 """
618 if not self.online:
618 if not self.online:
619 return 0
619 return 0
620
620
621 if (self.nReadBlocks >= self.dataBlocksPerFile):
621 if (self.nReadBlocks >= self.dataBlocksPerFile):
622 return 0
622 return 0
623
623
624 currentPointer = self.fp.tell()
624 currentPointer = self.fp.tell()
625
625
626 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
626 neededSize = self.processingHeaderObj.blockSize + self.basicHeaderSize
627
627
628 for nTries in range( self.nTries ):
628 for nTries in range( self.nTries ):
629
629
630 self.fp.close()
630 self.fp.close()
631 self.fp = open( self.filename, 'rb' )
631 self.fp = open( self.filename, 'rb' )
632 self.fp.seek( currentPointer )
632 self.fp.seek( currentPointer )
633
633
634 self.fileSize = os.path.getsize( self.filename )
634 self.fileSize = os.path.getsize( self.filename )
635 currentSize = self.fileSize - currentPointer
635 currentSize = self.fileSize - currentPointer
636
636
637 if ( currentSize >= neededSize ):
637 if ( currentSize >= neededSize ):
638 self.__rdBasicHeader()
638 self.__rdBasicHeader()
639 return 1
639 return 1
640
640
641 print "\tWaiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
641 print "\tWaiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
642 sleep( self.delay )
642 sleep( self.delay )
643
643
644
644
645 return 0
645 return 0
646
646
647 def __setNewBlock(self):
647 def __setNewBlock(self):
648
648
649 if self.online:
649 if self.online:
650 self.__jumpToLastBlock()
650 self.__jumpToLastBlock()
651
651
652 if self.flagIsNewFile:
652 if self.flagIsNewFile:
653 return 1
653 return 1
654
654
655 self.lastUTTime = self.utc
655 self.lastUTTime = self.utc
656
656
657 if self.online:
657 if self.online:
658 if self.__waitNewBlock():
658 if self.__waitNewBlock():
659 return 1
659 return 1
660
660
661 if self.nReadBlocks < self.dataBlocksPerFile:
661 if self.nReadBlocks < self.dataBlocksPerFile:
662 return 1
662 return 1
663
663
664 if not(self.setNextFile()):
664 if not(self.setNextFile()):
665 return 0
665 return 0
666
666
667 deltaTime = self.utc - self.lastUTTime
667 deltaTime = self.utc - self.lastUTTime
668
668
669 self.flagDiscontinuousBlock = 0
669 self.flagDiscontinuousBlock = 0
670
670
671 if deltaTime > self.maxTimeStep:
671 if deltaTime > self.maxTimeStep:
672 self.flagDiscontinuousBlock = 1
672 self.flagDiscontinuousBlock = 1
673
673
674 return 1
674 return 1
675
675
676
676
677 def readNextBlock(self):
677 def readNextBlock(self):
678 if not(self.__setNewBlock()):
678 if not(self.__setNewBlock()):
679 return 0
679 return 0
680
680
681 if not(self.readBlock()):
681 if not(self.readBlock()):
682 return 0
682 return 0
683
683
684 return 1
684 return 1
685
685
686 def printInfo(self):
686 def printInfo(self):
687
687
688 pass
688 pass
689
689
690 def getData(self):
690 def getData(self):
691
691
692 if self.flagNoMoreFiles:
692 if self.flagNoMoreFiles:
693 self.dataOut.flagNoData = True
693 self.dataOut.flagNoData = True
694 print 'Process finished'
694 print 'Process finished'
695 return 0
695 return 0
696
696
697 self.flagDiscontinuousBlock = 0
697 self.flagDiscontinuousBlock = 0
698 self.flagIsNewBlock = 0
698 self.flagIsNewBlock = 0
699
699
700 if not(self.readNextBlock()):
700 if not(self.readNextBlock()):
701 return 0
701 return 0
702
702
703 if self.data is None:
703 if self.data is None:
704 self.dataOut.flagNoData = True
704 self.dataOut.flagNoData = True
705 return 0
705 return 0
706
706
707 self.dataOut.data = self.data
707 self.dataOut.data = self.data
708 self.dataOut.data_header = self.data_header_dict
708 self.dataOut.data_header = self.data_header_dict
709 self.dataOut.utctime = self.utc
709 self.dataOut.utctime = self.utc
710
710
711 # self.dataOut.header = self.header_dict
711 # self.dataOut.header = self.header_dict
712 # self.dataOut.expName = self.expName
712 # self.dataOut.expName = self.expName
713 # self.dataOut.nChannels = self.nChannels
713 # self.dataOut.nChannels = self.nChannels
714 # self.dataOut.timeZone = self.timeZone
714 # self.dataOut.timeZone = self.timeZone
715 # self.dataOut.dataBlocksPerFile = self.dataBlocksPerFile
715 # self.dataOut.dataBlocksPerFile = self.dataBlocksPerFile
716 # self.dataOut.comments = self.comments
716 # self.dataOut.comments = self.comments
717 # # self.dataOut.timeInterval = self.timeInterval
717 # # self.dataOut.timeInterval = self.timeInterval
718 # self.dataOut.channelList = self.channelList
718 # self.dataOut.channelList = self.channelList
719 # self.dataOut.heightList = self.heightList
719 # self.dataOut.heightList = self.heightList
720 self.dataOut.flagNoData = False
720 self.dataOut.flagNoData = False
721
721
722 return self.dataOut.data
722 return self.dataOut.data
723
723
724 def run(self, **kwargs):
724 def run(self, **kwargs):
725
725
726 if not(self.isConfig):
726 if not(self.isConfig):
727 self.setup(**kwargs)
727 self.setup(**kwargs)
728 self.isConfig = True
728 self.isConfig = True
729
729
730 self.getData()
730 self.getData()
731
731
732 class SpectraHeisWriter(Operation):
732 class SpectraHeisWriter(Operation):
733 # set = None
733 # set = None
734 setFile = None
734 setFile = None
735 idblock = None
735 idblock = None
736 doypath = None
736 doypath = None
737 subfolder = None
737 subfolder = None
738
738
739 def __init__(self, **kwargs):
739 def __init__(self, **kwargs):
740 Operation.__init__(self, **kwargs)
740 Operation.__init__(self, **kwargs)
741 self.wrObj = PyFits()
741 self.wrObj = PyFits()
742 # self.dataOut = dataOut
742 # self.dataOut = dataOut
743 self.nTotalBlocks=0
743 self.nTotalBlocks=0
744 # self.set = None
744 # self.set = None
745 self.setFile = None
745 self.setFile = None
746 self.idblock = 0
746 self.idblock = 0
747 self.wrpath = None
747 self.wrpath = None
748 self.doypath = None
748 self.doypath = None
749 self.subfolder = None
749 self.subfolder = None
750 self.isConfig = False
750 self.isConfig = False
751
751
752 def isNumber(str):
752 def isNumber(str):
753 """
753 """
754 Chequea si el conjunto de caracteres que componen un string puede ser convertidos a un numero.
754 Chequea si el conjunto de caracteres que componen un string puede ser convertidos a un numero.
755
755
756 Excepciones:
756 Excepciones:
757 Si un determinado string no puede ser convertido a numero
757 Si un determinado string no puede ser convertido a numero
758 Input:
758 Input:
759 str, string al cual se le analiza para determinar si convertible a un numero o no
759 str, string al cual se le analiza para determinar si convertible a un numero o no
760
760
761 Return:
761 Return:
762 True : si el string es uno numerico
762 True : si el string es uno numerico
763 False : no es un string numerico
763 False : no es un string numerico
764 """
764 """
765 try:
765 try:
766 float( str )
766 float( str )
767 return True
767 return True
768 except:
768 except:
769 return False
769 return False
770
770
771 def setup(self, dataOut, wrpath):
771 def setup(self, dataOut, wrpath):
772
772
773 if not(os.path.exists(wrpath)):
773 if not(os.path.exists(wrpath)):
774 os.mkdir(wrpath)
774 os.mkdir(wrpath)
775
775
776 self.wrpath = wrpath
776 self.wrpath = wrpath
777 # self.setFile = 0
777 # self.setFile = 0
778 self.dataOut = dataOut
778 self.dataOut = dataOut
779
779
780 def putData(self):
780 def putData(self):
781 name= time.localtime( self.dataOut.utctime)
781 name= time.localtime( self.dataOut.utctime)
782 ext=".fits"
782 ext=".fits"
783
783
784 if self.doypath == None:
784 if self.doypath == None:
785 self.subfolder = 'F%4.4d%3.3d_%d' % (name.tm_year,name.tm_yday,time.mktime(datetime.datetime.now().timetuple()))
785 self.subfolder = 'F%4.4d%3.3d_%d' % (name.tm_year,name.tm_yday,time.mktime(datetime.datetime.now().timetuple()))
786 self.doypath = os.path.join( self.wrpath, self.subfolder )
786 self.doypath = os.path.join( self.wrpath, self.subfolder )
787 os.mkdir(self.doypath)
787 os.mkdir(self.doypath)
788
788
789 if self.setFile == None:
789 if self.setFile == None:
790 # self.set = self.dataOut.set
790 # self.set = self.dataOut.set
791 self.setFile = 0
791 self.setFile = 0
792 # if self.set != self.dataOut.set:
792 # if self.set != self.dataOut.set:
793 ## self.set = self.dataOut.set
793 ## self.set = self.dataOut.set
794 # self.setFile = 0
794 # self.setFile = 0
795
795
796 #make the filename
796 #make the filename
797 thisFile = 'D%4.4d%3.3d_%3.3d%s' % (name.tm_year,name.tm_yday,self.setFile,ext)
797 thisFile = 'D%4.4d%3.3d_%3.3d%s' % (name.tm_year,name.tm_yday,self.setFile,ext)
798
798
799 filename = os.path.join(self.wrpath,self.subfolder, thisFile)
799 filename = os.path.join(self.wrpath,self.subfolder, thisFile)
800
800
801 idblock = numpy.array([self.idblock],dtype="int64")
801 idblock = numpy.array([self.idblock],dtype="int64")
802 header=self.wrObj.cFImage(idblock=idblock,
802 header=self.wrObj.cFImage(idblock=idblock,
803 year=time.gmtime(self.dataOut.utctime).tm_year,
803 year=time.gmtime(self.dataOut.utctime).tm_year,
804 month=time.gmtime(self.dataOut.utctime).tm_mon,
804 month=time.gmtime(self.dataOut.utctime).tm_mon,
805 day=time.gmtime(self.dataOut.utctime).tm_mday,
805 day=time.gmtime(self.dataOut.utctime).tm_mday,
806 hour=time.gmtime(self.dataOut.utctime).tm_hour,
806 hour=time.gmtime(self.dataOut.utctime).tm_hour,
807 minute=time.gmtime(self.dataOut.utctime).tm_min,
807 minute=time.gmtime(self.dataOut.utctime).tm_min,
808 second=time.gmtime(self.dataOut.utctime).tm_sec)
808 second=time.gmtime(self.dataOut.utctime).tm_sec)
809
809
810 c=3E8
810 c=3E8
811 deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
811 deltaHeight = self.dataOut.heightList[1] - self.dataOut.heightList[0]
812 freq=numpy.arange(-1*self.dataOut.nHeights/2.,self.dataOut.nHeights/2.)*(c/(2*deltaHeight*1000))
812 freq=numpy.arange(-1*self.dataOut.nHeights/2.,self.dataOut.nHeights/2.)*(c/(2*deltaHeight*1000))
813
813
814 colList = []
814 colList = []
815
815
816 colFreq=self.wrObj.setColF(name="freq", format=str(self.dataOut.nFFTPoints)+'E', array=freq)
816 colFreq=self.wrObj.setColF(name="freq", format=str(self.dataOut.nFFTPoints)+'E', array=freq)
817
817
818 colList.append(colFreq)
818 colList.append(colFreq)
819
819
820 nchannel=self.dataOut.nChannels
820 nchannel=self.dataOut.nChannels
821
821
822 for i in range(nchannel):
822 for i in range(nchannel):
823 col = self.wrObj.writeData(name="PCh"+str(i+1),
823 col = self.wrObj.writeData(name="PCh"+str(i+1),
824 format=str(self.dataOut.nFFTPoints)+'E',
824 format=str(self.dataOut.nFFTPoints)+'E',
825 data=10*numpy.log10(self.dataOut.data_spc[i,:]))
825 data=10*numpy.log10(self.dataOut.data_spc[i,:]))
826
826
827 colList.append(col)
827 colList.append(col)
828
828
829 data=self.wrObj.Ctable(colList=colList)
829 data=self.wrObj.Ctable(colList=colList)
830
830
831 self.wrObj.CFile(header,data)
831 self.wrObj.CFile(header,data)
832
832
833 self.wrObj.wFile(filename)
833 self.wrObj.wFile(filename)
834
834
835 #update the setFile
835 #update the setFile
836 self.setFile += 1
836 self.setFile += 1
837 self.idblock += 1
837 self.idblock += 1
838
838
839 return 1
839 return 1
840
840
841 def run(self, dataOut, **kwargs):
841 def run(self, dataOut, **kwargs):
842
842
843 if not(self.isConfig):
843 if not(self.isConfig):
844
844
845 self.setup(dataOut, **kwargs)
845 self.setup(dataOut, **kwargs)
846 self.isConfig = True
846 self.isConfig = True
847
847
848 self.putData()
848 self.putData()
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