##// END OF EJS Templates
schain-jc
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@@ -0,0 +1,108
1 ## CHANGELOG:
2
3 ### 2.3
4 * Added high order function `multiSchain` for multiprocessing scripts.
5 * Added two new Processing Units `PublishData` and `ReceiverData` for receiving and sending dataOut through multiple ways (tcp, ipc, inproc).
6 * Added a new graphics Processing Unit `PlotterReceiver`. It is decoupled from normal processing sequence with support for data generated by multiprocessing scripts.
7 * Added support for sending realtime graphic to web server.
8 * XML command `schain` is now `schain --xml`.
9 * Added a CLI tool named `schain`.
10 * Scripts templates can be now generated with `schain generate`.
11 * Now it is possible to search Processing Units and Operations with `schain search [module]` to get the right name and its allowed parameters.
12 * Added suggestions when parameters are poorly written.
13 * `Controller.start()` now runs in a different process than the process calling it.
14 * Added `schainpy.utils.log` for log standarization.
15 * Running script on online mode no longer ignores date and hour. Issue #1109.
16 * Added support for receving voltage data directly from JARS (tcp, ipc).
17 * Updated README for compatibility with MAC OS GUI installation.
18 * Setup now installs numpy.
19
20 ### 2.2.6
21 * Graphics generated by the GUI are now the same as generated by scripts. Issue #1074.
22 * Added support for C extensions.
23 * Function `hildebrand_sehkon` optimized with a C wrapper.
24 * Numpy version updated.
25 * Migration to GIT.
26
27 ### 2.2.5:
28 * splitProfiles and combineProfiles modules were added to VoltageProc and Signal Chain GUI.
29 * nProfiles of USRP data (hdf5) is the number of profiles thera are in one second.
30 * jroPlotter works directly with data objects instead of dictionaries
31 * script "schain" was added to Signal Chain installer
32
33 ### 2.2.4.1:
34 * jroIO_usrp.py is update to read Sandra's data
35 * decimation in Spectra and RTI plots is always enabled.
36 * time* window option added to GUI
37
38 ### 2.2.4:
39 * jroproc_spectra_lags.py added to schainpy
40 * Bug fixed in schainGUI: ProcUnit was created with the same id in some cases.
41 * Bug fixed in jroHeaderIO: Header size validation.
42
43 ### 2.2.3.1:
44 * Filtering block by time has been added.
45 * Bug fixed plotting RTI, CoherenceMap and others using xmin and xmax parameters. The first day worked
46 properly but the next days did not.
47
48 ### 2.2.3:
49 * Bug fixed in GUI: Error getting(reading) Code value
50 * Bug fixed in GUI: Flip option always needs channelList field
51 * Bug fixed in jrodata: when one branch modified a value in "dataOut" (example: dataOut.code) this value
52 was modified for every branch (because this was a reference). It was modified in data.copy()
53 * Bug fixed in jroproc_voltage.profileSelector(): rangeList replaces to profileRangeList.
54
55 ### 2.2.2:
56 * VoltageProc: ProfileSelector, Reshape, Decoder with nTxs!=1 and getblock=True was tested
57 * Rawdata and testRawdata.py added to Signal Chain project
58
59 ### 2.2.1:
60 * Bugs fixed in GUI
61 * Views were improved in GUI
62 * Support to MST* ISR experiments
63 * Bug fixed getting noise using hyldebrant. (minimum number of points > 20%)
64 * handleError added to jroplotter.py
65
66 ### 2.2.0:
67 * GUI: use of external plotter
68 * Compatible with matplotlib 1.5.0
69
70 ### 2.1.5:
71 * serializer module added to Signal Chain
72 * jroplotter.py added to Signal Chain
73
74 ### 2.1.4.2:
75 * A new Plotter Class was added
76 * Project.start() does not accept filename as a parameter anymore
77
78 ### 2.1.4.1:
79 * Send notifications when an error different to ValueError is detected
80
81 ### 2.1.4:
82 * Sending error notifications to signal chain administrator
83 * Login to email server added
84
85 ### 2.1.3.3:
86 * Colored Button Icons were added to GUI
87
88 ### 2.1.3.2:
89 * GUI: user interaction enhanced
90 * controller_api.py: Safe access to ControllerThead
91
92 ### 2.1.3.1:
93 * GUI: every icon were resized
94 * jroproc_voltage.py: Print a message when "Read from code" option is selected and the code is not defined inside data file
95
96 ### 2.1.3:
97 * jroplot_heispectra.py: SpectraHeisScope was not showing the right channels
98 * jroproc_voltage.py: Bug fixed selecting profiles (self.nProfiles took a wrong value),
99 Bug fixed selecting heights by block (selecting profiles instead heights)
100 * jroproc_voltage.py: New feature added: decoding data by block using FFT.
101 * jroIO_heispectra.py: Bug fixed in FitsReader. Using local Fits instance instead schainpy.mode.data.jrodata.Fits.
102 * jroIO_heispectra.py: Channel index list does not exist.
103
104 ### 2.1.2:
105 * jroutils_ftp.py: Bug fixed, Any error sending file stopped the Server Thread
106 Server thread opens and closes remote server each time file list is sent
107 * jroplot_spectra.py: Noise path was not being created when noise data is saved.
108 * jroIO_base.py: startTime can be greater than endTime. Example: SpreadF [18:00 * 07:00] No newline at end of file
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@@ -100,10 +100,20 ENV/
100 # eclipse
100 # eclipse
101 .project
101 .project
102 .pydevproject
102 .pydevproject
103 <<<<<<< HEAD
103
104
104 # vscode
105 # vscode
105
106
106 .vscode
107 .vscode
107
108
108 schaingui/node_modules/
109 schaingui/node_modules/
109 schainpy/scripts/ No newline at end of file
110 schainpy/scripts/
111 =======
112 .svn/
113 *.png
114 *.pyc
115 schainpy/scripts
116 .vscode
117 schaingui/node_modules
118 trash
119 >>>>>>> master
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@@ -6,24 +6,40 Signal Chain (SCh) is a radar data processing library developed using [Python](w
6
6
7 ## Installation
7 ## Installation
8
8
9 Install system dependencies, download the latest stable release from [svn](http://jro-dev.igp.gob.pe/svn/jro_soft/schain/Releases/) e.g. schainpy-2.2.5.tar.gz. and install it as a normal python package.
9 Install system dependencies, clone the latest version from [git](http://jro-dev.igp.gob.pe/rhodecode/schain/) and install it as a normal python package.
10
10
11 ### Linux based system
11 ```
12 ```
12 $ sudo apt-get install python-pip python-dev gfortran libpng-dev freetype* libblas-dev liblapack-dev libatlas-base-dev python-qt4 python-tk libssl-dev libhdf5-dev
13 $ sudo apt-get install python-pip python-dev gfortran libpng-dev freetype* libblas-dev liblapack-dev libatlas-base-dev python-qt4 python-tk libssl-dev libhdf5-dev
13 $ tar xvzf schainpy-2.2.5.tar.gz
14 $ sudo pip install numpy
14 $ cd schainpy-2.2.5
15 $ git clone http://jro-dev.igp.gob.pe/rhodecode/schain/
16 $ cd schain
15 $ sudo pip install ./
17 $ sudo pip install ./
16 ```
17
18 **Its recommended to install schain in a virtual environment**
19
18
20 ```
19 ```
20 **It is recommended to install schain in a virtual environment**
21 ```
21 $ sudo pip install virtualenv
22 $ sudo pip install virtualenv
22 $ virtualenv /path/to/virtual --system-site-packages
23 $ virtualenv /path/to/virtual --system-site-packages
23 $ source /path/to/virtual/bin/activate
24 $ source /path/to/virtual/bin/activate
24 (virtual) $ cd schainpy-2.2.5
25 (virtual) $ cd schain
25 (virtual) $ pip install ./
26 (virtual) $ pip install ./
27
28 ```
29
30 ### MAC Os
26 ```
31 ```
32 $ brew install cartr/qt4/pyqt
33 $ git clone http://jro-dev.igp.gob.pe/rhodecode/schain/
34 $ cd schain
35 $ pip install ./
36 ```
37
38 if ```pip install ./``` does not work, install a proper python enviroment, and repeat the steps.
39 ```
40 $ brew install python
41 ```
42
27
43
28 ## First Script
44 ## First Script
29
45
@@ -128,4 +144,4 op.addParameter(name='wintitle', value='RTI', format='str')
128
144
129 controller.start()
145 controller.start()
130
146
131 ```
147 ``` No newline at end of file
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@@ -4,4 +4,5 Created on Feb 7, 2012
4 @author $Author$
4 @author $Author$
5 @version $Id$
5 @version $Id$
6 '''
6 '''
7 __version__ = "2.3" No newline at end of file
7
8 __version__ = "2.3"
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@@ -326,10 +326,10 class OperationConf():
326 def getParameterValue(self, parameterName):
326 def getParameterValue(self, parameterName):
327
327
328 parameterObj = self.getParameterObj(parameterName)
328 parameterObj = self.getParameterObj(parameterName)
329
329
330 # if not parameterObj:
330 # if not parameterObj:
331 # return None
331 # return None
332
332
333 value = parameterObj.getValue()
333 value = parameterObj.getValue()
334
334
335 return value
335 return value
@@ -647,11 +647,11 class ProcUnitConf():
647 def printattr(self):
647 def printattr(self):
648
648
649 print "%s[%s]: name = %s, datatype = %s, inputId = %s" %(self.ELEMENTNAME,
649 print "%s[%s]: name = %s, datatype = %s, inputId = %s" %(self.ELEMENTNAME,
650 self.id,
650 self.id,
651 self.name,
651 self.name,
652 self.datatype,
652 self.datatype,
653 self.inputId)
653 self.inputId)
654
654
655 for opConfObj in self.opConfObjList:
655 for opConfObj in self.opConfObjList:
656 opConfObj.printattr()
656 opConfObj.printattr()
657
657
@@ -706,13 +706,13 class ProcUnitConf():
706 sts = self.procUnitObj.call(opType = opConfObj.type,
706 sts = self.procUnitObj.call(opType = opConfObj.type,
707 opName = opConfObj.name,
707 opName = opConfObj.name,
708 opId = opConfObj.id,
708 opId = opConfObj.id,
709 )
709 **kwargs)
710
710
711 # total_time = time.time() - ini
711 # total_time = time.time() - ini
712 #
712 #
713 # if total_time > 0.002:
713 # if total_time > 0.002:
714 # print "%s::%s took %f seconds" %(self.name, opConfObj.name, total_time)
714 # print "%s::%s took %f seconds" %(self.name, opConfObj.name, total_time)
715
715
716 is_ok = is_ok or sts
716 is_ok = is_ok or sts
717
717
718 return is_ok
718 return is_ok
@@ -858,18 +858,18 class ReadUnitConf(ProcUnitConf):
858 opObj.addParameter(name=key, value=value, format=type(value).__name__)
858 opObj.addParameter(name=key, value=value, format=type(value).__name__)
859
859
860 return opObj
860 return opObj
861
861
862 # def makeXml(self, projectElement):
862 # def makeXml(self, projectElement):
863 #
863 #
864 # procUnitElement = SubElement(projectElement, self.ELEMENTNAME)
864 # procUnitElement = SubElement(projectElement, self.ELEMENTNAME)
865 # procUnitElement.set('id', str(self.id))
865 # procUnitElement.set('id', str(self.id))
866 # procUnitElement.set('name', self.name)
866 # procUnitElement.set('name', self.name)
867 # procUnitElement.set('datatype', self.datatype)
867 # procUnitElement.set('datatype', self.datatype)
868 # procUnitElement.set('inputId', str(self.inputId))
868 # procUnitElement.set('inputId', str(self.inputId))
869 #
869 #
870 # for opConfObj in self.opConfObjList:
870 # for opConfObj in self.opConfObjList:
871 # opConfObj.makeXml(procUnitElement)
871 # opConfObj.makeXml(procUnitElement)
872
872
873 def readXml(self, upElement):
873 def readXml(self, upElement):
874
874
875 self.id = upElement.get('id')
875 self.id = upElement.get('id')
@@ -1111,8 +1111,8 class Project():
1111
1111
1112 self.id = self.projectElement.get('id')
1112 self.id = self.projectElement.get('id')
1113 self.name = self.projectElement.get('name')
1113 self.name = self.projectElement.get('name')
1114 self.description = self.projectElement.get('description')
1114 self.description = self.projectElement.get('description')
1115
1115
1116 readUnitElementList = self.projectElement.iter(ReadUnitConf().getElementName())
1116 readUnitElementList = self.projectElement.iter(ReadUnitConf().getElementName())
1117
1117
1118 for readUnitElement in readUnitElementList:
1118 for readUnitElement in readUnitElementList:
@@ -1142,8 +1142,8 class Project():
1142 def printattr(self):
1142 def printattr(self):
1143
1143
1144 print "Project[%s]: name = %s, description = %s" %(self.id,
1144 print "Project[%s]: name = %s, description = %s" %(self.id,
1145 self.name,
1145 self.name,
1146 self.description)
1146 self.description)
1147
1147
1148 for procUnitConfObj in self.procUnitConfObjDict.values():
1148 for procUnitConfObj in self.procUnitConfObjDict.values():
1149 procUnitConfObj.printattr()
1149 procUnitConfObj.printattr()
@@ -1180,9 +1180,9 class Project():
1180 import socket
1180 import socket
1181
1181
1182 err = traceback.format_exception(sys.exc_info()[0],
1182 err = traceback.format_exception(sys.exc_info()[0],
1183 sys.exc_info()[1],
1183 sys.exc_info()[1],
1184 sys.exc_info()[2])
1184 sys.exc_info()[2])
1185
1185
1186 print "***** Error occurred in %s *****" %(procUnitConfObj.name)
1186 print "***** Error occurred in %s *****" %(procUnitConfObj.name)
1187 print "***** %s" %err[-1]
1187 print "***** %s" %err[-1]
1188
1188
@@ -1213,10 +1213,10 class Project():
1213
1213
1214 adminObj = schainpy.admin.SchainNotify()
1214 adminObj = schainpy.admin.SchainNotify()
1215 adminObj.sendAlert(message=message,
1215 adminObj.sendAlert(message=message,
1216 subject=subject,
1216 subject=subject,
1217 subtitle=subtitle,
1217 subtitle=subtitle,
1218 filename=self.filename)
1218 filename=self.filename)
1219
1219
1220 def isPaused(self):
1220 def isPaused(self):
1221 return 0
1221 return 0
1222
1222
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@@ -14,8 +14,8 class ControllerThread(threading.Thread, Project):
14 self.setDaemon(True)
14 self.setDaemon(True)
15
15
16 self.lock = threading.Lock()
16 self.lock = threading.Lock()
17 self.control = {'stop':False, 'pause':False}
17 self.control = { 'stop':False, 'pause':False }
18
18
19 def __del__(self):
19 def __del__(self):
20
20
21 self.control['stop'] = True
21 self.control['stop'] = True
@@ -90,7 +90,7 class ControllerThread(threading.Thread, Project):
90 continue
90 continue
91
91
92 if thisOpObj.name in plotterList:
92 if thisOpObj.name in plotterList:
93 thisOpObj.type = "plotter"
93 thisOpObj.type = "other"
94
94
95 def setPlotterQueue(self, plotter_queue):
95 def setPlotterQueue(self, plotter_queue):
96
96
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@@ -292,11 +292,9 class JROData(GenericData):
292 return fmax
292 return fmax
293
293
294 def getFmax(self):
294 def getFmax(self):
295
296 PRF = 1./(self.ippSeconds * self.nCohInt)
295 PRF = 1./(self.ippSeconds * self.nCohInt)
297
296
298 fmax = PRF
297 fmax = PRF
299
300 return fmax
298 return fmax
301
299
302 def getVmax(self):
300 def getVmax(self):
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@@ -24,8 +24,8 class SpectraPlot(Figure):
24 self.isConfig = False
24 self.isConfig = False
25 self.__nsubplots = 1
25 self.__nsubplots = 1
26
26
27 self.WIDTH = 250
27 self.WIDTH = 1000
28 self.HEIGHT = 250
28 self.HEIGHT = 1000
29 self.WIDTHPROF = 120
29 self.WIDTHPROF = 120
30 self.HEIGHTPROF = 0
30 self.HEIGHTPROF = 0
31 self.counter_imagwr = 0
31 self.counter_imagwr = 0
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@@ -124,7 +124,7 class PlotManager():
124 subtitle = "%s:\n" %(name)
124 subtitle = "%s:\n" %(name)
125 subtitle += "Hostname: %s\n" %socket.gethostbyname(socket.gethostname())
125 subtitle += "Hostname: %s\n" %socket.gethostbyname(socket.gethostname())
126 subtitle += "Working directory: %s\n" %os.path.abspath("./")
126 subtitle += "Working directory: %s\n" %os.path.abspath("./")
127 # subtitle += "Configuration file: %s\n" %self.filename
127 # subtitle += "Configuration file: %s\n" %self.filename
128 subtitle += "Time: %s\n" %str(datetime.datetime.now())
128 subtitle += "Time: %s\n" %str(datetime.datetime.now())
129
129
130 adminObj = schainpy.admin.SchainNotify()
130 adminObj = schainpy.admin.SchainNotify()
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@@ -625,7 +625,7 class JRODataReader(JRODataIO):
625 dateList, pathList = self.findDatafiles(path, startDate, endDate, expLabel, ext, walk, include_path=True)
625 dateList, pathList = self.findDatafiles(path, startDate, endDate, expLabel, ext, walk, include_path=True)
626
626
627 if dateList == []:
627 if dateList == []:
628 # print "[Reading] Date range selected invalid [%s - %s]: No *%s files in %s)" %(startDate, endDate, ext, path)
628 # print "[Reading] Date range selected invalid [%s - %s]: No *%s files in %s)" %(startDate, endDate, ext, path)
629 return None, None
629 return None, None
630
630
631 if len(dateList) > 1:
631 if len(dateList) > 1:
@@ -637,8 +637,8 class JRODataReader(JRODataIO):
637 datetimeList = []
637 datetimeList = []
638
638
639 for thisPath in pathList:
639 for thisPath in pathList:
640 # thisPath = pathList[pathDict[file]]
640 # thisPath = pathList[pathDict[file]]
641
641
642 fileList = glob.glob1(thisPath, "*%s" %ext)
642 fileList = glob.glob1(thisPath, "*%s" %ext)
643 fileList.sort()
643 fileList.sort()
644
644
@@ -767,7 +767,7 class JRODataReader(JRODataIO):
767 idFile += 1
767 idFile += 1
768 if not(idFile < len(self.filenameList)):
768 if not(idFile < len(self.filenameList)):
769 self.flagNoMoreFiles = 1
769 self.flagNoMoreFiles = 1
770 # print "[Reading] No more Files"
770 # print "[Reading] No more Files"
771 return 0
771 return 0
772
772
773 filename = self.filenameList[idFile]
773 filename = self.filenameList[idFile]
@@ -785,7 +785,7 class JRODataReader(JRODataIO):
785 self.fileSize = fileSize
785 self.fileSize = fileSize
786 self.fp = fp
786 self.fp = fp
787
787
788 # print "[Reading] Setting the file: %s"%self.filename
788 # print "[Reading] Setting the file: %s"%self.filename
789
789
790 return 1
790 return 1
791
791
@@ -868,14 +868,14 class JRODataReader(JRODataIO):
868 if self.fp != None: self.fp.close()
868 if self.fp != None: self.fp.close()
869 self.fp = open(fullfilename, 'rb')
869 self.fp = open(fullfilename, 'rb')
870 self.flagNoMoreFiles = 0
870 self.flagNoMoreFiles = 0
871 # print '[Reading] Setting the file: %s' % fullfilename
871 # print '[Reading] Setting the file: %s' % fullfilename
872 else:
872 else:
873 self.fileSize = 0
873 self.fileSize = 0
874 self.filename = None
874 self.filename = None
875 self.flagIsNewFile = 0
875 self.flagIsNewFile = 0
876 self.fp = None
876 self.fp = None
877 self.flagNoMoreFiles = 1
877 self.flagNoMoreFiles = 1
878 # print '[Reading] No more files to read'
878 # print '[Reading] No more files to read'
879
879
880 return fileOk_flag
880 return fileOk_flag
881
881
@@ -929,7 +929,7 class JRODataReader(JRODataIO):
929 return 1
929 return 1
930
930
931 if self.fileSize == self.fileSizeByHeader:
931 if self.fileSize == self.fileSizeByHeader:
932 # self.flagEoF = True
932 # self.flagEoF = True
933 return 0
933 return 0
934
934
935 print "[Reading] Waiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
935 print "[Reading] Waiting %0.2f seconds for the next block, try %03d ..." % (self.delay, nTries+1)
@@ -983,13 +983,13 class JRODataReader(JRODataIO):
983 else:
983 else:
984 self.fp.seek(self.fp.tell() - neededsize)
984 self.fp.seek(self.fp.tell() - neededsize)
985 break
985 break
986
986
987 # csize = self.fileSize - self.fp.tell()
987 # csize = self.fileSize - self.fp.tell()
988 # neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize
988 # neededsize = self.processingHeaderObj.blockSize + self.basicHeaderSize
989 # factor = int(csize/neededsize)
989 # factor = int(csize/neededsize)
990 # if factor > 0:
990 # if factor > 0:
991 # self.fp.seek(self.fp.tell() + factor*neededsize)
991 # self.fp.seek(self.fp.tell() + factor*neededsize)
992
992
993 self.flagIsNewFile = 0
993 self.flagIsNewFile = 0
994 self.__isFirstTimeOnline = 0
994 self.__isFirstTimeOnline = 0
995
995
@@ -997,10 +997,10 class JRODataReader(JRODataIO):
997 #if self.server is None:
997 #if self.server is None:
998 if self.fp == None:
998 if self.fp == None:
999 return 0
999 return 0
1000
1000
1001 # if self.online:
1001 # if self.online:
1002 # self.__jumpToLastBlock()
1002 # self.__jumpToLastBlock()
1003
1003
1004 if self.flagIsNewFile:
1004 if self.flagIsNewFile:
1005 self.lastUTTime = self.basicHeaderObj.utc
1005 self.lastUTTime = self.basicHeaderObj.utc
1006 return 1
1006 return 1
@@ -1094,8 +1094,8 class JRODataReader(JRODataIO):
1094 self.dtype = datatype_str
1094 self.dtype = datatype_str
1095 #self.ippSeconds = 2 * 1000 * self.radarControllerHeaderObj.ipp / self.c
1095 #self.ippSeconds = 2 * 1000 * self.radarControllerHeaderObj.ipp / self.c
1096 self.fileSizeByHeader = self.processingHeaderObj.dataBlocksPerFile * self.processingHeaderObj.blockSize + self.firstHeaderSize + self.basicHeaderSize*(self.processingHeaderObj.dataBlocksPerFile - 1)
1096 self.fileSizeByHeader = self.processingHeaderObj.dataBlocksPerFile * self.processingHeaderObj.blockSize + self.firstHeaderSize + self.basicHeaderSize*(self.processingHeaderObj.dataBlocksPerFile - 1)
1097 # self.dataOut.channelList = numpy.arange(self.systemHeaderObj.numChannels)
1097 # self.dataOut.channelList = numpy.arange(self.systemHeaderObj.numChannels)
1098 # self.dataOut.channelIndexList = numpy.arange(self.systemHeaderObj.numChannels)
1098 # self.dataOut.channelIndexList = numpy.arange(self.systemHeaderObj.numChannels)
1099 self.getBlockDimension()
1099 self.getBlockDimension()
1100
1100
1101 def __verifyFile(self, filename, msgFlag=True):
1101 def __verifyFile(self, filename, msgFlag=True):
@@ -1340,47 +1340,14 class JRODataReader(JRODataIO):
1340 return
1340 return
1341
1341
1342 self.fileIndex = -1
1342 self.fileIndex = -1
1343 self.pathList = pathList
1343 self.pathList = []
1344 self.filenameList = filenameList
1344 self.filenameList = []
1345 file_name = os.path.basename(filenameList[-1])
1345 return
1346 basename, ext = os.path.splitext(file_name)
1346
1347 last_set = int(basename[-3:])
1347 # self.getBasicHeader()
1348
1348
1349 self.online = online
1349 if last_set != None:
1350 self.realtime = realtime
1350 self.dataOut.last_block = last_set * self.processingHeaderObj.dataBlocksPerFile + self.basicHeaderObj.dataBlock
1351 self.delay = delay
1352 ext = ext.lower()
1353 self.ext = ext
1354 self.getByBlock = getblock
1355 self.nTxs = nTxs
1356 self.startTime = startTime
1357 self.endTime = endTime
1358
1359 #Added-----------------
1360 self.selBlocksize = blocksize
1361 self.selBlocktime = blocktime
1362
1363 # Verbose-----------
1364 self.verbose = verbose
1365 self.warnings = warnings
1366
1367 if not(self.setNextFile()):
1368 if (startDate!=None) and (endDate!=None):
1369 print "[Reading] No files in range: %s - %s" %(datetime.datetime.combine(startDate,startTime).ctime(), datetime.datetime.combine(endDate,endTime).ctime())
1370 elif startDate != None:
1371 print "[Reading] No files in range: %s" %(datetime.datetime.combine(startDate,startTime).ctime())
1372 else:
1373 print "[Reading] No files"
1374
1375 self.fileIndex = -1
1376 self.pathList = []
1377 self.filenameList = []
1378 return
1379
1380 # self.getBasicHeader()
1381
1382 if last_set != None:
1383 self.dataOut.last_block = last_set * self.processingHeaderObj.dataBlocksPerFile + self.basicHeaderObj.dataBlock
1384 return
1351 return
1385
1352
1386 def getBasicHeader(self):
1353 def getBasicHeader(self):
Show file before | Show file after | Hide comments
@@ -55,6 +55,7 class DigitalRFReader(ProcessingUnit):
55 self.__nCode = None
55 self.__nCode = None
56 self.__nBaud = None
56 self.__nBaud = None
57 self.__code = None
57 self.__code = None
58 self.dtype = None
58
59
59 def close(self):
60 def close(self):
60 print 'Average of writing to digital rf format is ', self.oldAverage * 1000
61 print 'Average of writing to digital rf format is ', self.oldAverage * 1000
@@ -73,13 +74,30 class DigitalRFReader(ProcessingUnit):
73 ippSeconds = 1.0*self.__nSamples/self.__sample_rate
74 ippSeconds = 1.0*self.__nSamples/self.__sample_rate
74
75
75 nProfiles = 1.0/ippSeconds # Number of profiles in one second
76 nProfiles = 1.0/ippSeconds # Number of profiles in one second
76
77
77 self.dataOut.radarControllerHeaderObj = RadarControllerHeader(self.__radarControllerHeader)
78 try:
78
79 self.dataOut.radarControllerHeaderObj = RadarControllerHeader(self.__radarControllerHeader)
79 self.dataOut.systemHeaderObj = SystemHeader(self.__systemHeader)
80 except:
80
81 self.dataOut.radarControllerHeaderObj = RadarControllerHeader(
82 txA=0,
83 txB=0,
84 nWindows=1,
85 nHeights=self.__nSamples,
86 firstHeight=self.__firstHeigth,
87 deltaHeight=self.__deltaHeigth,
88 codeType=self.__codeType,
89 nCode=self.__nCode, nBaud=self.__nBaud,
90 code = self.__code)
91
92 try:
93 self.dataOut.systemHeaderObj = SystemHeader(self.__systemHeader)
94 except:
95 self.dataOut.systemHeaderObj = SystemHeader(nSamples=self.__nSamples,
96 nProfiles=nProfiles,
97 nChannels=len(self.__channelList),
98 adcResolution=14)
81 self.dataOut.type = "Voltage"
99 self.dataOut.type = "Voltage"
82
100
83 self.dataOut.data = None
101 self.dataOut.data = None
84
102
85 self.dataOut.dtype = self.dtype
103 self.dataOut.dtype = self.dtype
@@ -112,15 +130,19 class DigitalRFReader(ProcessingUnit):
112
130
113 self.dataOut.errorCount = 0
131 self.dataOut.errorCount = 0
114
132
115 self.dataOut.nCohInt = self.fixed_metadata_dict['nCohInt']
133 try:
134 self.dataOut.nCohInt = self.fixed_metadata_dict.get('nCohInt', 1)
116
135
117 self.dataOut.flagDecodeData = self.fixed_metadata_dict['flagDecodeData'] # asumo que la data esta decodificada
136 self.dataOut.flagDecodeData = self.fixed_metadata_dict['flagDecodeData'] # asumo que la data esta decodificada
118
137
119 self.dataOut.flagDeflipData = self.fixed_metadata_dict['flagDeflipData'] # asumo que la data esta sin flip
138 self.dataOut.flagDeflipData = self.fixed_metadata_dict['flagDeflipData'] # asumo que la data esta sin flip
120
139
121 self.dataOut.flagShiftFFT = self.fixed_metadata_dict['flagShiftFFT']
140 self.dataOut.flagShiftFFT = self.fixed_metadata_dict['flagShiftFFT']
122
141
123 self.dataOut.useLocalTime = self.fixed_metadata_dict['useLocalTime']
142 self.dataOut.useLocalTime = self.fixed_metadata_dict['useLocalTime']
143 except:
144 pass
145
124
146
125 self.dataOut.ippSeconds = ippSeconds
147 self.dataOut.ippSeconds = ippSeconds
126
148
@@ -237,35 +259,29 class DigitalRFReader(ProcessingUnit):
237 top_properties = self.digitalReadObj.get_properties(channelNameList[channelList[0]])
259 top_properties = self.digitalReadObj.get_properties(channelNameList[channelList[0]])
238
260
239
261
240
241
242
243
244 self.__num_subchannels = top_properties['num_subchannels']
262 self.__num_subchannels = top_properties['num_subchannels']
245 self.__sample_rate = 1.0 * top_properties['sample_rate_numerator'] / top_properties['sample_rate_denominator']
263 self.__sample_rate = 1.0 * top_properties['sample_rate_numerator'] / top_properties['sample_rate_denominator']
246
247 # self.__samples_per_file = top_properties['samples_per_file'][0]
264 # self.__samples_per_file = top_properties['samples_per_file'][0]
248 self.__deltaHeigth = 1e6*0.15/self.__sample_rate ## why 0.15?
265 self.__deltaHeigth = 1e6*0.15/self.__sample_rate ## why 0.15?
249
266
250 this_metadata_file = self.digitalReadObj.get_digital_metadata(channelNameList[channelList[0]])
267 this_metadata_file = self.digitalReadObj.get_digital_metadata(channelNameList[channelList[0]])
251 metadata_bounds = this_metadata_file.get_bounds()
268 metadata_bounds = this_metadata_file.get_bounds()
252 self.fixed_metadata_dict = this_metadata_file.read(metadata_bounds[0])[metadata_bounds[0]] ## GET FIRST HEADER
269 self.fixed_metadata_dict = this_metadata_file.read(metadata_bounds[0])[metadata_bounds[0]] ## GET FIRST HEADER
253 self.__processingHeader = self.fixed_metadata_dict['processingHeader']
270
254 self.__radarControllerHeader = self.fixed_metadata_dict['radarControllerHeader']
271 try:
255 self.__systemHeader = self.fixed_metadata_dict['systemHeader']
272 self.__processingHeader = self.fixed_metadata_dict['processingHeader']
256 self.dtype = cPickle.loads(self.fixed_metadata_dict['dtype'])
273 self.__radarControllerHeader = self.fixed_metadata_dict['radarControllerHeader']
274 self.__systemHeader = self.fixed_metadata_dict['systemHeader']
275 self.dtype = cPickle.loads(self.fixed_metadata_dict['dtype'])
276 except:
277 pass
278
257
279
258 self.__frequency = None
280 self.__frequency = None
259
281
260 try:
282 self.__frequency = self.fixed_metadata_dict.get('frequency', 1)
261 self.__frequency = self.fixed_metadata_dict['frequency']
262 except:
263 self.__frequency = None
264
283
265 try:
284 self.__timezone = self.fixed_metadata_dict.get('timezone', 300)
266 self.__timezone = self.fixed_metadata_dict['timezone'] * 60
267 except:
268 self.__timezone = 0
269
285
270
286
271 try:
287 try:
@@ -284,11 +300,15 class DigitalRFReader(ProcessingUnit):
284 nBaud = 1
300 nBaud = 1
285 code = numpy.ones((nCode, nBaud), dtype=numpy.int)
301 code = numpy.ones((nCode, nBaud), dtype=numpy.int)
286
302
287 if codeType:
303 try:
288 nCode = self.__radarControllerHeader['nCode']
304 if codeType:
289 nBaud = self.__radarControllerHeader['nBaud']
305 nCode = self.__radarControllerHeader['nCode']
290 code = self.__radarControllerHeader['code']
306 nBaud = self.__radarControllerHeader['nBaud']
291
307 code = self.__radarControllerHeader['code']
308 except:
309 pass
310
311
292 if not ippKm:
312 if not ippKm:
293 try:
313 try:
294 # seconds to km
314 # seconds to km
@@ -296,6 +316,7 class DigitalRFReader(ProcessingUnit):
296 except:
316 except:
297 ippKm = None
317 ippKm = None
298 ####################################################
318 ####################################################
319 self.__ippKm = ippKm
299 startUTCSecond = None
320 startUTCSecond = None
300 endUTCSecond = None
321 endUTCSecond = None
301
322
@@ -336,7 +357,7 class DigitalRFReader(ProcessingUnit):
336 self.profileIndex = 0
357 self.profileIndex = 0
337 self.i= 0
358 self.i= 0
338 self.__delay = delay
359 self.__delay = delay
339 self.__ippKm = ippKm
360
340 self.__codeType = codeType
361 self.__codeType = codeType
341 self.__nCode = nCode
362 self.__nCode = nCode
342 self.__nBaud = nBaud
363 self.__nBaud = nBaud
@@ -587,6 +608,7 class DigitalRFWriter(Operation):
587 Operation.__init__(self, **kwargs)
608 Operation.__init__(self, **kwargs)
588 self.metadata_dict = {}
609 self.metadata_dict = {}
589 self.dataOut = None
610 self.dataOut = None
611 self.dtype = None
590
612
591 def setHeader(self):
613 def setHeader(self):
592
614
Show file before | Show file after | Hide comments
@@ -109,7 +109,7 class SpectraProc(ProcessingUnit):
109
109
110 if self.dataIn.type == "Spectra":
110 if self.dataIn.type == "Spectra":
111 self.dataOut.copy(self.dataIn)
111 self.dataOut.copy(self.dataIn)
112 # self.__selectPairs(pairsList)
112 # self.__selectPairs(pairsList)
113 return True
113 return True
114
114
115 if self.dataIn.type == "Voltage":
115 if self.dataIn.type == "Voltage":
@@ -878,7 +878,6 class IncohInt(Operation):
878 return self.__initime, avgdata_spc, avgdata_cspc, avgdata_dc
878 return self.__initime, avgdata_spc, avgdata_cspc, avgdata_dc
879
879
880 def run(self, dataOut, n=None, timeInterval=None, overlapping=False):
880 def run(self, dataOut, n=None, timeInterval=None, overlapping=False):
881
882 if n==1:
881 if n==1:
883 return
882 return
884
883
Show file before | Show file after | Hide comments
@@ -32,9 +32,7 class Remote(Thread):
32 None
32 None
33
33
34 Written by:
34 Written by:
35
35 "Miguel Urco":mailto:miguel.urco@jro.igp.gob.pe Jun. 03, 2015
36 "Miguel Urco":mailto:miguel.urco@jro.igp.gob.pe Jun. 03, 2015
37
38 """
36 """
39
37
40 server = None
38 server = None
@@ -168,13 +166,13 class Remote(Thread):
168 return 0
166 return 0
169
167
170 self.mutex.acquire()
168 self.mutex.acquire()
171 # init = time.time()
169 # init = time.time()
172 #
170 #
173 # while(self.bussy):
171 # while(self.bussy):
174 # sleep(0.1)
172 # sleep(0.1)
175 # if time.time() - init > 2*self.period:
173 # if time.time() - init > 2*self.period:
176 # return 0
174 # return 0
177
175
178 self.fileList = fileList
176 self.fileList = fileList
179 self.mutex.release()
177 self.mutex.release()
180 return 1
178 return 1
@@ -197,8 +195,8 class Remote(Thread):
197
195
198 if self.stopFlag:
196 if self.stopFlag:
199 break
197 break
200
198
201 # self.bussy = True
199 # self.bussy = True
202 self.mutex.acquire()
200 self.mutex.acquire()
203
201
204 print "[Remote Server] Opening %s" %self.__server
202 print "[Remote Server] Opening %s" %self.__server
@@ -400,21 +398,21 class SSHClient(Remote):
400 def open(self, server, username, password, remotefolder, port=22):
398 def open(self, server, username, password, remotefolder, port=22):
401
399
402 """
400 """
403 This method is used to set SSH parameters and establish a connection to a remote server
401 This method is used to set SSH parameters and establish a connection to a remote server
404
402
405 Inputs:
403 Inputs:
406 server - remote server IP Address
404 server - remote server IP Address
407
405
408 username - remote server Username
406 username - remote server Username
409
407
410 password - remote server password
408 password - remote server password
411
409
412 remotefolder - remote server current working directory
410 remotefolder - remote server current working directory
413
411
414 Return: void
412 Return: void
415
413
416 Affects:
414 Affects:
417 self.status - in case of error or fail connection this parameter is set to 0 else 1
415 self.status - in case of error or fail connection this parameter is set to 0 else 1
418
416
419 """
417 """
420 import socket
418 import socket
@@ -440,7 +438,7 class SSHClient(Remote):
440 try:
438 try:
441 sshClientObj.connect(server, username=username, password=password, port=port)
439 sshClientObj.connect(server, username=username, password=password, port=port)
442 except paramiko.AuthenticationException, e:
440 except paramiko.AuthenticationException, e:
443 # print "SSH username or password are incorrect: %s"
441 # print "SSH username or password are incorrect: %s"
444 print "[SSH Server]:", e
442 print "[SSH Server]:", e
445 return 0
443 return 0
446 except SSHException, e:
444 except SSHException, e:
@@ -474,7 +472,7 class SSHClient(Remote):
474
472
475 def close(self):
473 def close(self):
476 """
474 """
477 Close connection to remote server
475 Close connection to remote server
478 """
476 """
479 if not self.status:
477 if not self.status:
480 return 0
478 return 0
@@ -484,13 +482,13 class SSHClient(Remote):
484
482
485 def __execute(self, command):
483 def __execute(self, command):
486 """
484 """
487 __execute a command on remote server
485 __execute a command on remote server
488
486
489 Input:
487 Input:
490 command - Exmaple 'ls -l'
488 command - Exmaple 'ls -l'
491
489
492 Return:
490 Return:
493 0 in error case else 1
491 0 in error case else 1
494 """
492 """
495 if not self.status:
493 if not self.status:
496 return 0
494 return 0
@@ -509,13 +507,13 class SSHClient(Remote):
509
507
510 def mkdir(self, remotefolder):
508 def mkdir(self, remotefolder):
511 """
509 """
512 mkdir is used to make a new directory in remote server
510 mkdir is used to make a new directory in remote server
513
511
514 Input:
512 Input:
515 remotefolder - directory name
513 remotefolder - directory name
516
514
517 Return:
515 Return:
518 0 in error case else 1
516 0 in error case else 1
519 """
517 """
520
518
521 command = 'mkdir %s' %remotefolder
519 command = 'mkdir %s' %remotefolder
@@ -530,16 +528,16 class SSHClient(Remote):
530
528
531 def cd(self, remotefolder):
529 def cd(self, remotefolder):
532 """
530 """
533 cd is used to change remote working directory on server
531 cd is used to change remote working directory on server
534
532
535 Input:
533 Input:
536 remotefolder - current working directory
534 remotefolder - current working directory
537
535
538 Affects:
536 Affects:
539 self.remotefolder
537 self.remotefolder
540
538
541 Return:
539 Return:
542 0 in case of error else 1
540 0 in case of error else 1
543 """
541 """
544 if not self.status:
542 if not self.status:
545 return 0
543 return 0
@@ -582,8 +580,8 class SendToServer(ProcessingUnit):
582 ProcessingUnit.__init__(self, **kwargs)
580 ProcessingUnit.__init__(self, **kwargs)
583
581
584 self.isConfig = False
582 self.isConfig = False
585 self.clientObj = None
583 self.clientObj = None
586
584
587 def setup(self, server, username, password, remotefolder, localfolder, ext='.png', period=60, protocol='ftp', **kwargs):
585 def setup(self, server, username, password, remotefolder, localfolder, ext='.png', period=60, protocol='ftp', **kwargs):
588
586
589 self.clientObj = None
587 self.clientObj = None
@@ -638,18 +636,20 class SendToServer(ProcessingUnit):
638 return fullfilenameList
636 return fullfilenameList
639
637
640 def run(self, **kwargs):
638 def run(self, **kwargs):
641
642 if not self.isConfig:
639 if not self.isConfig:
643 self.init = time.time()
640 self.init = time.time()
644 self.setup(**kwargs)
641 self.setup(**kwargs)
645 self.isConfig = True
642 self.isConfig = True
646
643
644 if not self.clientObj.is_alive():
645 print "[Remote Server]: Restarting connection "
646 self.setup(**kwargs)
647
647 if time.time() - self.init >= self.period:
648 if time.time() - self.init >= self.period:
648 fullfilenameList = self.findFiles()
649 fullfilenameList = self.findFiles()
649
650
650 if self.clientObj.updateFileList(fullfilenameList):
651 if self.clientObj.updateFileList(fullfilenameList):
651 print "[Remote Server]: Sending the next files ", str(fullfilenameList)
652 print "[Remote Server]: Sending the next files ", str(fullfilenameList)
652
653 self.init = time.time()
653 self.init = time.time()
654
654
655 def close(self):
655 def close(self):
@@ -705,9 +705,9 class FTP(object):
705 try:
705 try:
706 self.ftp = ftplib.FTP(self.server)
706 self.ftp = ftplib.FTP(self.server)
707 self.ftp.login(self.username,self.password)
707 self.ftp.login(self.username,self.password)
708 self.ftp.cwd(self.remotefolder)
708 self.ftp.cwd(self.remotefolder)
709 # print 'Connect to FTP Server: Successfully'
709 # print 'Connect to FTP Server: Successfully'
710
710
711 except ftplib.all_errors:
711 except ftplib.all_errors:
712 print 'Error FTP Service'
712 print 'Error FTP Service'
713 self.status = 1
713 self.status = 1
@@ -738,7 +738,7 class FTP(object):
738 name, ext = os.path.splitext(f)
738 name, ext = os.path.splitext(f)
739 if ext != '':
739 if ext != '':
740 self.fileList.append(f)
740 self.fileList.append(f)
741 # print 'filename: %s - size: %d'%(f,self.ftp.size(f))
741 # print 'filename: %s - size: %d'%(f,self.ftp.size(f))
742
742
743 def parmsByDefault(self):
743 def parmsByDefault(self):
744 server = 'jro-app.igp.gob.pe'
744 server = 'jro-app.igp.gob.pe'
Show file before | Show file after | Hide comments
@@ -1,1 +1,1
1 <Project description="Testing USRP data reader" id="191" name="test01"><ReadUnit datatype="Voltage" id="1911" inputId="0" name="VoltageReader"><Operation id="19111" name="run" priority="1" type="self"><Parameter format="str" id="191111" name="datatype" value="Voltage" /><Parameter format="str" id="191112" name="path" value="/home/nanosat/data/John" /><Parameter format="date" id="191113" name="startDate" value="2000/07/03" /><Parameter format="date" id="191114" name="endDate" value="2017/07/03" /><Parameter format="time" id="191115" name="startTime" value="00:00:00" /><Parameter format="time" id="191116" name="endTime" value="23:59:59" /><Parameter format="int" id="191118" name="blockTime" value="100" /><Parameter format="int" id="191119" name="walk" value="0" /><Parameter format="int" id="191120" name="online" value="0" /></Operation></ReadUnit><ProcUnit datatype="VoltageProc" id="1912" inputId="1911" name="VoltageProc"><Operation id="19121" name="run" priority="1" type="self" /><Operation id="19122" name="Decoder" priority="2" type="external"><Parameter format="intlist" id="191221" name="code" value="1,-1,-1,1,-1" /><Parameter format="int" id="191222" name="nCode" value="5" /><Parameter format="int" id="191223" name="nBaud" value="1" /></Operation></ProcUnit></Project> No newline at end of file
1 <Project description="Claire" id="002" name="script02"><ReadUnit datatype="VoltageReader" id="21" inputId="0" name="VoltageReader"><Operation id="211" name="run" priority="1" type="self"><Parameter format="str" id="2111" name="datatype" value="VoltageReader" /><Parameter format="str" id="2112" name="path" value="/media/nanosat/0BDE10E00BDE10E0/CLAIRE" /><Parameter format="date" id="2113" name="startDate" value="2017/07/26" /><Parameter format="date" id="2114" name="endDate" value="2017/07/26" /><Parameter format="time" id="2115" name="startTime" value="15:00:00" /><Parameter format="time" id="2116" name="endTime" value="16:00:00" /><Parameter format="int" id="2118" name="delay" value="30" /><Parameter format="int" id="2119" name="walk" value="1" /><Parameter format="int" id="2120" name="online" value="0" /></Operation><Operation id="212" name="printNumberOfBlock" priority="2" type="self" /></ReadUnit><ProcUnit datatype="VoltageProc" id="22" inputId="21" name="VoltageProc"><Operation id="221" name="run" priority="1" type="self" /></ProcUnit><ProcUnit datatype="SpectraProc" id="23" inputId="22" name="SpectraProc"><Operation id="231" name="run" priority="1" type="self"><Parameter format="int" id="2311" name="nFFTPoints" value="128" /><Parameter format="int" id="2312" name="nProfiles" value="128" /><Parameter format="pairslist" id="2313" name="pairsList" value="(0,1),(0,2),(1,2)" /></Operation><Operation id="232" name="setRadarFrequency" priority="2" type="self"><Parameter format="float" id="2321" name="frequency" value="445000000.0" /></Operation><Operation id="233" name="IncohInt" priority="3" type="other"><Parameter format="float" id="2331" name="timeInterval" value="128" /></Operation><Operation id="234" name="removeDC" priority="4" type="self"><Parameter format="int" id="2341" name="mode" value="2" /></Operation><Operation id="235" name="SpectraPlot" priority="5" type="external"><Parameter format="int" id="2351" name="id" value="235" /><Parameter format="str" id="2352" name="wintitle" value="SpectraPlot" /><Parameter format="str" id="2353" name="xaxis" value="frequency" /><Parameter format="float" id="2354" name="zmin" value="15.0" /><Parameter format="float" id="2355" name="zmax" value="50.0" /><Parameter format="int" id="2356" name="exp_code" value="21" /><Parameter format="int" id="2357" name="ftp_wei" value="0" /><Parameter format="int" id="2358" name="plot_pos" value="0" /></Operation></ProcUnit></Project> No newline at end of file
Show file before | Show file after | Hide comments
@@ -5,54 +5,57 Created on Jul 16, 2014
5 @author: Miguel Urco
5 @author: Miguel Urco
6 """
6 """
7
7
8 from schainpy import __version__
9 from setuptools import setup, Extension
8 from setuptools import setup, Extension
9 from setuptools.command.build_ext import build_ext as _build_ext
10 from schainpy import __version__
11
12 class build_ext(_build_ext):
13 def finalize_options(self):
14 _build_ext.finalize_options(self)
15 # Prevent numpy from thinking it is still in its setup process:
16 __builtins__.__NUMPY_SETUP__ = False
17 import numpy
18 self.include_dirs.append(numpy.get_include())
19
10
20
11 setup(name="schainpy",
21 setup(name="schainpy",
12 version=__version__,
22 version=__version__,
13 description="Python tools to read, write and process Jicamarca data",
23 description="Python tools to read, write and process Jicamarca data",
14 author="Miguel Urco",
24 author="Miguel Urco",
15 author_email="miguel.urco@jro.igp.gob.pe",
25 author_email="miguel.urco@jro.igp.gob.pe",
16 url="http://jro.igp.gob.pe",
26 url="http://jro.igp.gob.pe",
17 packages={'schainpy',
27 packages = {'schainpy',
18 'schainpy.model',
28 'schainpy.model',
19 'schainpy.model.data',
29 'schainpy.model.data',
20 'schainpy.model.graphics',
30 'schainpy.model.graphics',
21 'schainpy.model.io',
31 'schainpy.model.io',
22 'schainpy.model.proc',
32 'schainpy.model.proc',
23 'schainpy.model.serializer',
33 'schainpy.model.serializer',
24 'schainpy.model.utils',
34 'schainpy.model.utils',
25 'schainpy.gui',
35 'schainpy.gui',
26 'schainpy.gui.figures',
36 'schainpy.gui.figures',
27 'schainpy.gui.viewcontroller',
37 'schainpy.gui.viewcontroller',
28 'schainpy.gui.viewer',
38 'schainpy.gui.viewer',
29 'schainpy.gui.viewer.windows'},
39 'schainpy.gui.viewer.windows'},
30 ext_package='schainpy',
40 ext_package='schainpy',
31 py_modules=[''],
41 py_modules=[''],
32 package_data={'': ['schain.conf.template'],
42 package_data={'': ['schain.conf.template'],
33 'schainpy.gui.figures': ['*.png', '*.jpg'],
43 'schainpy.gui.figures': ['*.png','*.jpg'],
34 },
44 },
35 include_package_data=False,
45 include_package_data=False,
36 entry_points={
46 scripts =['schainpy/gui/schainGUI',
37 'console_scripts': [
47 'schainpy/scripts/schain'],
38 'schain = schaincli.cli:main',
48 ext_modules=[
39 ],
49 Extension("cSchain", ["schainpy/model/proc/extensions.c"]
40 },
50 )],
41 scripts=['schainpy/gui/schainGUI'],
51 cmdclass={'build_ext':build_ext},
42 ext_modules=[Extension("cSchain", ["schainpy/model/proc/extensions.c"], include_dirs=[numpy.get_include()])],
52 setup_requires=["numpy >= 1.11.2"],
43 install_requires=[
53 install_requires=[
44 "scipy >= 0.14.0",
54 "scipy >= 0.14.0",
45 "h5py >= 2.2.1",
55 "h5py >= 2.2.1",
46 "matplotlib >= 1.4.2",
56 "matplotlib >= 1.4.2",
47 "pyfits >= 3.4",
57 "pyfits >= 3.4",
48 "numpy >= 1.11.2",
58 "paho-mqtt >= 1.2",
49 "paramiko >= 2.1.2",
59 "zmq",
50 "paho-mqtt >= 1.2",
60 ],
51 "zmq",
52 "fuzzywuzzy",
53 "click",
54 "colorama",
55 "python-Levenshtein"
56 ],
57 )
61 )
58
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