schain-jc Commit - r1107:0e8d1b4cd150

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r1107:0e8d1b4cd150

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schainpy/model/io/julIO_param.py created 644 +343 0

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	1	'''
	2	Created on Set 10, 2017
	3
	4	@author: Juan C. Espinoza
	5	'''
	6
	7
	8	import os
	9	import sys
	10	import time
	11	import glob
	12	import datetime
	13
	14	import numpy
	15
	16	from schainpy.model.proc.jroproc_base import ProcessingUnit
	17	from schainpy.model.data.jrodata import Parameters
	18	from schainpy.model.io.jroIO_base import JRODataReader, isNumber
	19	from schainpy.utils import log
	20
	21	FILE_HEADER_STRUCTURE = numpy.dtype([
	22	('year', 'f'),
	23	('doy', 'f'),
	24	('nint', 'f'),
	25	('navg', 'f'),
	26	('fh', 'f'),
	27	('dh', 'f'),
	28	('nheights', 'f'),
	29	('ipp', 'f')
	30	])
	31
	32	REC_HEADER_STRUCTURE = numpy.dtype([
	33	('magic', 'f'),
	34	('hours', 'f'),
	35	('interval', 'f'),
	36	('h0', 'f'),
	37	('nheights', 'f'),
	38	('snr1', 'f'),
	39	('snr2', 'f'),
	40	('snr', 'f'),
	41	])
	42
	43	DATA_STRUCTURE = numpy.dtype([
	44	('range', '<u4'),
	45	('status', '<u4'),
	46	('zonal', '<f4'),
	47	('meridional', '<f4'),
	48	('vertical', '<f4'),
	49	('zonal_a', '<f4'),
	50	('meridional_a', '<f4'),
	51	('corrected_fading', '<f4'), # seconds
	52	('uncorrected_fading', '<f4'), # seconds
	53	('time_diff', '<f4'),
	54	('major_axis', '<f4'),
	55	('axial_ratio', '<f4'),
	56	('orientation', '<f4'),
	57	('sea_power', '<u4'),
	58	('sea_algorithm', '<u4')
	59	])
	60
	61
	62	class JULIAParamReader(JRODataReader, ProcessingUnit):
	63	'''
	64	Julia data (eej, spf, 150km) *.dat files
	65	'''
	66
	67	ext = '.dat'
	68
	69	def __init__(self, **kwargs):
	70
	71	ProcessingUnit.__init__(self, **kwargs)
	72
	73	self.dataOut = Parameters()
	74	self.counter_records = 0
	75	self.flagNoMoreFiles = 0
	76	self.isConfig = False
	77	self.filename = None
	78	self.clockpulse = 0.15
	79	self.kd = 213.6
	80
	81	def setup(self,
	82	path=None,
	83	startDate=None,
	84	endDate=None,
	85	ext=None,
	86	startTime=datetime.time(0, 0, 0),
	87	endTime=datetime.time(23, 59, 59),
	88	timezone=0,
	89	format=None,
	90	**kwargs):
	91
	92	self.path = path
	93	self.startDate = startDate
	94	self.endDate = endDate
	95	self.startTime = startTime
	96	self.endTime = endTime
	97	self.datatime = datetime.datetime(1900, 1, 1)
	98	self.format = format
	99
	100	if self.path is None:
	101	raise ValueError, "The path is not valid"
	102
	103	if ext is None:
	104	ext = self.ext
	105
	106	self.search_files(self.path, startDate, endDate, ext)
	107	self.timezone = timezone
	108	self.fileIndex = 0
	109
	110	if not self.fileList:
	111	log.warning('There is no files matching these date in the folder: {}'.format(
	112	path), self.name)
	113
	114	self.setNextFile()
	115
	116	def search_files(self, path, startDate, endDate, ext):
	117	'''
	118	Searching for BLTR rawdata file in path
	119	Creating a list of file to proces included in [startDate,endDate]
	120
	121	Input:
	122	path - Path to find BLTR rawdata files
	123	startDate - Select file from this date
	124	enDate - Select file until this date
	125	ext - Extension of the file to read
	126	'''
	127
	128	log.success('Searching files in {} '.format(path), self.name)
	129	fileList0 = glob.glob1(path, '{}*{}'.format(self.format.upper(), ext))
	130	fileList0.sort()
	131
	132	self.fileList = []
	133	self.dateFileList = []
	134
	135	for thisFile in fileList0:
	136	year = thisFile[2:4]
	137	if not isNumber(year):
	138	continue
	139
	140	month = thisFile[4:6]
	141	if not isNumber(month):
	142	continue
	143
	144	day = thisFile[6:8]
	145	if not isNumber(day):
	146	continue
	147
	148	year, month, day = int(year), int(month), int(day)
	149	dateFile = datetime.date(year+2000, month, day)
	150
	151	if (startDate > dateFile) or (endDate < dateFile):
	152	continue
	153
	154	self.fileList.append(thisFile)
	155	self.dateFileList.append(dateFile)
	156
	157	return
	158
	159	def setNextFile(self):
	160
	161	file_id = self.fileIndex
	162
	163	if file_id == len(self.fileList):
	164	log.success('No more files in the folder', self.name)
	165	self.flagNoMoreFiles = 1
	166	return 0
	167
	168	log.success('Opening {}'.format(self.fileList[file_id]), self.name)
	169	filename = os.path.join(self.path, self.fileList[file_id])
	170
	171	dirname, name = os.path.split(filename)
	172	self.siteFile = name.split('.')[0]
	173	if self.filename is not None:
	174	self.fp.close()
	175	self.filename = filename
	176	self.fp = open(self.filename, 'rb')
	177
	178	self.header_file = numpy.fromfile(self.fp, FILE_HEADER_STRUCTURE, 1)
	179	yy = self.header_file['year'] - 1900 * (self.header_file['year'] > 3000)
	180	self.year = int(yy + 1900 * (yy < 1000))
	181	self.doy = int(self.header_file['doy'])
	182	self.dH = round(self.header_file['dh'], 2)
	183	self.ipp = round(self.header_file['ipp'], 2)
	184	self.sizeOfFile = os.path.getsize(self.filename)
	185	self.counter_records = 0
	186	self.flagIsNewFile = 0
	187	self.fileIndex += 1
	188
	189	return 1
	190
	191	def readNextBlock(self):
	192
	193	while True:
	194	if not self.readBlock():
	195	self.flagIsNewFile = 1
	196	if not self.setNextFile():
	197	return 0
	198
	199	if (self.datatime < datetime.datetime.combine(self.startDate, self.startTime)) or \
	200	(self.datatime > datetime.datetime.combine(self.endDate, self.endTime)):
	201	log.warning(
	202	'Reading Record No. {} -> {} [Skipping]'.format(
	203	self.counter_records,
	204	self.datatime.ctime()),
	205	self.name)
	206	continue
	207	break
	208
	209	log.log('Reading Record No. {} -> {}'.format(
	210	self.counter_records,
	211	self.datatime.ctime()), self.name)
	212
	213	return 1
	214
	215	def readBlock(self):
	216
	217	pointer = self.fp.tell()
	218	heights, dt = self.readHeader()
	219	self.fp.seek(pointer)
	220	buffer_h = []
	221	buffer_d = []
	222	while True:
	223	pointer = self.fp.tell()
	224	if pointer == self.sizeOfFile:
	225	return 0
	226	heights, datatime = self.readHeader()
	227	if dt == datatime:
	228	buffer_h.append(heights)
	229	buffer_d.append(self.readData(len(heights)))
	230	continue
	231	self.fp.seek(pointer)
	232	break
	233
	234	if dt.date() > self.datatime.date():
	235	self.flagDiscontinuousBlock = 1
	236	self.datatime = dt
	237	self.time = (dt - datetime.datetime(1970, 1, 1)).total_seconds() + time.timezone
	238	self.heights = numpy.concatenate(buffer_h)
	239	self.buffer = numpy.zeros((5, len(self.heights))) + numpy.nan
	240	self.buffer[0, :] = numpy.concatenate([buf[0] for buf in buffer_d])
	241	self.buffer[1, :] = numpy.concatenate([buf[1] for buf in buffer_d])
	242	self.buffer[2, :] = numpy.concatenate([buf[2] for buf in buffer_d])
	243	self.buffer[3, :] = numpy.concatenate([buf[3] for buf in buffer_d])
	244	self.buffer[4, :] = numpy.concatenate([buf[4] for buf in buffer_d])
	245
	246	self.counter_records += 1
	247
	248	return 1
	249
	250	def readHeader(self):
	251	'''
	252	Parse recordHeader
	253	'''
	254
	255	self.header_rec = numpy.fromfile(self.fp, REC_HEADER_STRUCTURE, 1)
	256	self.interval = self.header_rec['interval']
	257	if self.header_rec['magic'] == 888.:
	258	self.header_rec['h0'] = round(self.header_rec['h0'], 2)
	259	nheights = int(self.header_rec['nheights'])
	260	hours = float(self.header_rec['hours'][0])
	261	heights = numpy.arange(nheights) * self.dH + self.header_rec['h0']
	262	datatime = datetime.datetime(self.year, 1, 1) + datetime.timedelta(days=self.doy-1, hours=hours)
	263	return heights, datatime
	264	else:
	265	return False
	266
	267	def readData(self, N):
	268	'''
	269	Parse data
	270	'''
	271
	272	buffer = numpy.fromfile(self.fp, 'f', 8*N).reshape(N, 8)
	273
	274	pow0 = buffer[:, 0]
	275	pow1 = buffer[:, 1]
	276	acf0 = (buffer[:,2] + buffer[:,3]*1j) / pow0
	277	acf1 = (buffer[:,4] + buffer[:,5]*1j) / pow1
	278	dccf = (buffer[:,6] + buffer[:,7]1j) / (pow0pow1)
	279
	280	### SNR
	281	sno = (pow0 + pow1 - self.header_rec['snr']) / self.header_rec['snr']
	282	sno10 = numpy.log10(sno)
	283	# dsno = 1.0 / numpy.sqrt(self.header_file['nint'] * self.header_file['navg']) * (1 + (1 / sno))
	284
	285	### Vertical Drift
	286	sp = numpy.sqrt(numpy.abs(acf0)*numpy.abs(acf1))
	287	sp[numpy.where(numpy.abs(sp) >= 1.0)] = numpy.sqrt(0.9999)
	288
	289	vzo = -numpy.arctan2(acf0.imag + acf1.imag,acf0.real + acf1.real)1.5E51.5/(self.ipp*numpy.pi)
	290	dvzo = numpy.sqrt(1.0 - spsp)0.3381.5E5/(numpy.sqrt(self.header_file['nint']self.header_file['navg'])spself.ipp)
	291	err = numpy.where(dvzo <= 0.1)
	292	dvzo[err] = 0.1
	293
	294	#Zonal Drifts
	295	dt = self.header_file['nint']*self.ipp / 1.5E5
	296	coh = numpy.sqrt(numpy.abs(dccf))
	297	err = numpy.where(coh >= 1.0)
	298	coh[err] = numpy.sqrt(0.99999)
	299
	300	err = numpy.where(coh <= 0.1)
	301	coh[err] = numpy.sqrt(0.1)
	302
	303	vxo = numpy.arctan2(dccf.imag, dccf.real)self.header_rec['h0']1.0E3/(self.kd*dt)
	304	dvxo = numpy.sqrt(1.0 - cohcoh)self.header_rec['h0']1.0E3/(numpy.sqrt(self.header_file['nint']self.header_file['navg'])cohself.kd*dt)
	305
	306	err = numpy.where(dvxo <= 0.1)
	307	dvxo[err] = 0.1
	308
	309	return vzo, dvzo, vxo, dvxo, sno10
	310
	311	def set_output(self):
	312	'''
	313	Storing data from databuffer to dataOut object
	314	'''
	315
	316	self.dataOut.data_SNR = self.buffer[4].reshape(1, -1)
	317	self.dataOut.heightList = self.heights
	318	self.dataOut.data_param = self.buffer[0:4,]
	319	self.dataOut.utctimeInit = self.time
	320	self.dataOut.utctime = self.time
	321	self.dataOut.useLocalTime = True
	322	self.dataOut.paramInterval = self.interval
	323	self.dataOut.timezone = self.timezone
	324	self.dataOut.sizeOfFile = self.sizeOfFile
	325	self.dataOut.flagNoData = False
	326	self.dataOut.flagDiscontinuousBlock = self.flagDiscontinuousBlock
	327
	328	def getData(self):
	329	'''
	330	Storing data from databuffer to dataOut object
	331	'''
	332	if self.flagNoMoreFiles:
	333	self.dataOut.flagNoData = True
	334	log.success('No file left to process', self.name)
	335	return 0
	336
	337	if not self.readNextBlock():
	338	self.dataOut.flagNoData = True
	339	return 0
	340
	341	self.set_output()
	342
	343	return 1

schainpy/CHANGELOG.md +3 0

             ## CHANGELOG:
             ### 2.3
+            * Added support for Madrigal formats (reading/writing).
+            * Added support for reading BLTR parameters (*.sswma).
+            * Added support for reading Julia format (*.dat).
             * Added high order function `MPProject` for multiprocessing scripts.
             * Added two new Processing Units `PublishData` and `ReceiverData` for receiving and sending dataOut through multiple ways (tcp, ipc, inproc).
             * Added a new graphics Processing Unit `PlotterReceiver`. It is decoupled from normal processing sequence with support for data generated by multiprocessing scripts.
             * Added support for sending realtime graphic to web server.
             * GUI command `schain` is now `schainGUI`.
             * Added a CLI tool named `schain`.
             	* Scripts templates can be now generated with `schain generate`.
             	* Now it is possible to search Processing Units and Operations with `schain search [module]` to get the right name and its allowed parameters.
             	* `schain xml` to run xml scripts.
             * Added suggestions when parameters are poorly written.
             * `Controller.start()` now runs in a different process than the process calling it.
             * Added `schainpy.utils.log` for log standarization.
             * Running script on online mode no longer ignores date and hour. Issue #1109.
             * Added support for receving voltage data directly from JARS (tcp, ipc).
             * Updated README for MAC OS GUI installation.
             * Setup now installs numpy.
             ### 2.2.6
             * Graphics generated by the GUI are now the same as generated by scripts. Issue #1074.
             * Added support for C extensions.
             * Function `hildebrand_sehkon` optimized with a C wrapper.
             * Numpy version updated.
             * Migration to GIT.
             ### 2.2.5:
             * splitProfiles and combineProfiles modules were added to VoltageProc and Signal Chain GUI.
             * nProfiles of USRP data (hdf5) is the number of profiles thera are in one second.
             * jroPlotter works directly with data objects instead of dictionaries
             * script "schain" was added to Signal Chain installer
             ### 2.2.4.1:
             * jroIO_usrp.py is update to read Sandra's data
             * decimation in Spectra and RTI plots is always enabled.
             * time* window option added to GUI
             ### 2.2.4:
             * jroproc_spectra_lags.py added to schainpy
             * Bug fixed in schainGUI: ProcUnit was created with the same id in some cases.
             * Bug fixed in jroHeaderIO: Header size validation.
             ### 2.2.3.1:
             * Filtering block by time has been added.
             * Bug fixed plotting RTI, CoherenceMap and others using xmin and xmax parameters. The first day worked
             properly but the next days did not.
             ### 2.2.3:
             * Bug fixed in GUI: Error getting(reading) Code value
             * Bug fixed in GUI: Flip option always needs channelList field
             * Bug fixed in jrodata: when one branch modified a value in "dataOut" (example: dataOut.code) this value
             was modified for every branch (because this was a reference). It was modified in data.copy()
             * Bug fixed in jroproc_voltage.profileSelector(): rangeList replaces to profileRangeList.
             ### 2.2.2:
             * VoltageProc: ProfileSelector, Reshape, Decoder with nTxs!=1 and getblock=True was tested
             * Rawdata and testRawdata.py added to Signal Chain project
             ### 2.2.1:
             * Bugs fixed in GUI
             * Views were improved in GUI
             * Support to MST* ISR experiments
             * Bug fixed getting noise using hyldebrant. (minimum number of points > 20%)
             * handleError added to jroplotter.py
             ### 2.2.0:
             * GUI: use of external plotter
             * Compatible with matplotlib 1.5.0
             ### 2.1.5:
             * serializer module added to Signal Chain
             * jroplotter.py added to Signal Chain
             ### 2.1.4.2:
             * A new Plotter Class was added
             * Project.start() does not accept filename as a parameter anymore
             ### 2.1.4.1:
             * Send notifications when an error different to ValueError is detected
             ### 2.1.4:
             * Sending error notifications to signal chain administrator
             * Login to email server added
             ### 2.1.3.3:
             * Colored Button Icons were added to GUI
             ### 2.1.3.2:
             * GUI: user interaction enhanced
             * controller_api.py: Safe access to ControllerThead
             ### 2.1.3.1:
             * GUI: every icon were resized
             * jroproc_voltage.py: Print a message when "Read from code" option is selected and the code is not defined inside data file
             ### 2.1.3:
             * jroplot_heispectra.py: SpectraHeisScope was not showing the right channels
             * jroproc_voltage.py: Bug fixed selecting profiles (self.nProfiles took a wrong value),
             					 Bug fixed selecting heights by block (selecting profiles instead heights)
             * jroproc_voltage.py: New feature added: decoding data by block using FFT.
             * jroIO_heispectra.py: Bug fixed in FitsReader. Using local Fits instance instead schainpy.mode.data.jrodata.Fits.
             * jroIO_heispectra.py: Channel index list does not exist.
             ### 2.1.2:
             * jroutils_ftp.py: Bug fixed, Any error sending file stopped the Server Thread
             				  Server thread opens and closes remote server each time file list is sent
             * jroplot_spectra.py: Noise path was not being created when noise data is saved.
             * jroIO_base.py: startTime can be greater than endTime. Example: SpreadF [18:00 *  07:00]

schainpy/model/graphics/jroplot_data.py +11 -8

             import os
             import time
             import glob
             import datetime
             from multiprocessing import Process
             import zmq
             import numpy
             import matplotlib
             import matplotlib.pyplot as plt
             from mpl_toolkits.axes_grid1 import make_axes_locatable
             from matplotlib.ticker import FuncFormatter, LinearLocator, MultipleLocator
             from schainpy.model.proc.jroproc_base import Operation
             from schainpy.utils import log
             jet_values = matplotlib.pyplot.get_cmap('jet', 100)(numpy.arange(100))[10:90]
             blu_values = matplotlib.pyplot.get_cmap(
                 'seismic_r', 20)(numpy.arange(20))[10:15]
             ncmap = matplotlib.colors.LinearSegmentedColormap.from_list(
                 'jro', numpy.vstack((blu_values, jet_values)))
             matplotlib.pyplot.register_cmap(cmap=ncmap)
             CMAPS = [plt.get_cmap(s) for s in ('jro', 'jet', 'RdBu_r', 'seismic')]
             def figpause(interval):
                 backend = plt.rcParams['backend']
                 if backend in matplotlib.rcsetup.interactive_bk:
                     figManager = matplotlib._pylab_helpers.Gcf.get_active()
                     if figManager is not None:
                         canvas = figManager.canvas
                         if canvas.figure.stale:
                             canvas.draw()
                         canvas.start_event_loop(interval)
                         return
             class PlotData(Operation, Process):
                 '''
                 Base class for Schain plotting operations
                 '''
                 CODE = 'Figure'
                 colormap = 'jro'
                 bgcolor = 'white'
                 CONFLATE = False
                 __MAXNUMX = 80
                 __missing = 1E30
                 __attrs__ = ['show', 'save', 'xmin', 'xmax', 'ymin', 'ymax', 'zmin', 'zmax',
                              'zlimits', 'xlabel', 'ylabel', 'xaxis','cb_label', 'title',
                              'colorbar', 'bgcolor', 'width', 'height', 'localtime', 'oneFigure',
                              'showprofile', 'decimation']
                 def __init__(self, **kwargs):
                     Operation.__init__(self, plot=True, **kwargs)
                     Process.__init__(self)
                     self.kwargs['code'] = self.CODE
                     self.mp = False
                     self.data = None
                     self.isConfig = False
                     self.figures = []
                     self.axes = []
                     self.cb_axes = []
                     self.localtime = kwargs.pop('localtime', True)
                     self.show = kwargs.get('show', True)
                     self.save = kwargs.get('save', False)
                     self.colormap = kwargs.get('colormap', self.colormap)
                     self.colormap_coh = kwargs.get('colormap_coh', 'jet')
                     self.colormap_phase = kwargs.get('colormap_phase', 'RdBu_r')
                     self.colormaps = kwargs.get('colormaps', None)
                     self.bgcolor = kwargs.get('bgcolor', self.bgcolor)
                     self.showprofile = kwargs.get('showprofile', False)
                     self.title = kwargs.get('wintitle', self.CODE.upper())
                     self.cb_label = kwargs.get('cb_label', None)
                     self.cb_labels = kwargs.get('cb_labels', None)
                     self.xaxis = kwargs.get('xaxis', 'frequency')
                     self.zmin = kwargs.get('zmin', None)
                     self.zmax = kwargs.get('zmax', None)
                     self.zlimits = kwargs.get('zlimits', None)
                     self.xmin = kwargs.get('xmin', None)
                     self.xmax = kwargs.get('xmax', None)
                     self.xrange = kwargs.get('xrange', 24)
                     self.ymin = kwargs.get('ymin', None)
                     self.ymax = kwargs.get('ymax', None)
                     self.xlabel = kwargs.get('xlabel', None)
                     self.__MAXNUMY = kwargs.get('decimation', 200)
                     self.showSNR = kwargs.get('showSNR', False)
                     self.oneFigure = kwargs.get('oneFigure', True)
                     self.width = kwargs.get('width', None)
                     self.height = kwargs.get('height', None)
                     self.colorbar = kwargs.get('colorbar', True)
                     self.factors = kwargs.get('factors', [1, 1, 1, 1, 1, 1, 1, 1])
-                    self.titles = ['' for __ in range(16)]
+                    self.titles = kwargs.get('titles', [])
                     self.polar = False
                 def __fmtTime(self, x, pos):
                     '''
                     '''
                     return '{}'.format(self.getDateTime(x).strftime('%H:%M'))
                 def __setup(self):
                     '''
                     Common setup for all figures, here figures and axes are created
                     '''
                     if self.CODE not in self.data:
                         raise ValueError(log.error('Missing data for {}'.format(self.CODE),
                                                    self.name))
                     self.setup()
                     self.time_label = 'LT' if self.localtime else 'UTC'
                     if self.data.localtime:
                         self.getDateTime = datetime.datetime.fromtimestamp
                     else:
                         self.getDateTime = datetime.datetime.utcfromtimestamp
                     if self.width is None:
                         self.width = 8
                     self.figures = []
                     self.axes = []
                     self.cb_axes = []
                     self.pf_axes = []
                     self.cmaps = []
                     size = '15%' if self.ncols == 1 else '30%'
                     pad = '4%' if self.ncols == 1 else '8%'
                     if self.oneFigure:
                         if self.height is None:
                             self.height = 1.4 * self.nrows + 1
                         fig = plt.figure(figsize=(self.width, self.height),
                                          edgecolor='k',
                                          facecolor='w')
                         self.figures.append(fig)
                         for n in range(self.nplots):
                             ax = fig.add_subplot(self.nrows, self.ncols,
                                                  n + 1, polar=self.polar)
                             ax.tick_params(labelsize=8)
                             ax.firsttime = True
                             ax.index = 0
                             ax.press = None
                             self.axes.append(ax)
                             if self.showprofile:
                                 cax = self.__add_axes(ax, size=size, pad=pad)
                                 cax.tick_params(labelsize=8)
                                 self.pf_axes.append(cax)
                     else:
                         if self.height is None:
                             self.height = 3
                         for n in range(self.nplots):
                             fig = plt.figure(figsize=(self.width, self.height),
                                              edgecolor='k',
                                              facecolor='w')
                             ax = fig.add_subplot(1, 1, 1, polar=self.polar)
                             ax.tick_params(labelsize=8)
                             ax.firsttime = True
                             ax.index = 0
                             ax.press = None
                             self.figures.append(fig)
                             self.axes.append(ax)
                             if self.showprofile:
                                 cax = self.__add_axes(ax, size=size, pad=pad)
                                 cax.tick_params(labelsize=8)
                                 self.pf_axes.append(cax)
                     for n in range(self.nrows):
                         if self.colormaps is not None:
                             cmap = plt.get_cmap(self.colormaps[n])
                         else:
                             cmap = plt.get_cmap(self.colormap)
                         cmap.set_bad(self.bgcolor, 1.)
                         self.cmaps.append(cmap)
                     for fig in self.figures:
                         fig.canvas.mpl_connect('key_press_event', self.OnKeyPress)
                         fig.canvas.mpl_connect('scroll_event', self.OnBtnScroll)
                         fig.canvas.mpl_connect('button_press_event', self.onBtnPress)
                         fig.canvas.mpl_connect('motion_notify_event', self.onMotion)
                         fig.canvas.mpl_connect('button_release_event', self.onBtnRelease)
                         if self.show:
                             fig.show()
                 def OnKeyPress(self, event):
                     '''
                     Event for pressing keys (up, down) change colormap
                     '''
                     ax = event.inaxes
                     if ax in self.axes:
                         if event.key == 'down':
                             ax.index += 1
                         elif event.key == 'up':
                             ax.index -= 1
                         if ax.index < 0:
                             ax.index = len(CMAPS) - 1
                         elif ax.index == len(CMAPS):
                             ax.index = 0
                         cmap = CMAPS[ax.index]
                         ax.cbar.set_cmap(cmap)
                         ax.cbar.draw_all()
                         ax.plt.set_cmap(cmap)
                         ax.cbar.patch.figure.canvas.draw()
                         self.colormap = cmap.name
                 def OnBtnScroll(self, event):
                     '''
                     Event for scrolling, scale figure
                     '''
                     cb_ax = event.inaxes
                     if cb_ax in [ax.cbar.ax for ax in self.axes if ax.cbar]:
                         ax = [ax for ax in self.axes if cb_ax == ax.cbar.ax][0]
                         pt = ax.cbar.ax.bbox.get_points()[:, 1]
                         nrm = ax.cbar.norm
                         vmin, vmax, p0, p1, pS = (
                             nrm.vmin, nrm.vmax, pt[0], pt[1], event.y)
                         scale = 2 if event.step == 1 else 0.5
                         point = vmin + (vmax - vmin) / (p1 - p0) * (pS - p0)
                         ax.cbar.norm.vmin = point - scale * (point - vmin)
                         ax.cbar.norm.vmax = point - scale * (point - vmax)
                         ax.plt.set_norm(ax.cbar.norm)
                         ax.cbar.draw_all()
                         ax.cbar.patch.figure.canvas.draw()
                 def onBtnPress(self, event):
                     '''
                     Event for mouse button press
                     '''
                     cb_ax = event.inaxes
                     if cb_ax is None:
                         return
                     if cb_ax in [ax.cbar.ax for ax in self.axes if ax.cbar]:
                         cb_ax.press = event.x, event.y
                     else:
                         cb_ax.press = None
                 def onMotion(self, event):
                     '''
                     Event for move inside colorbar
                     '''
                     cb_ax = event.inaxes
                     if cb_ax is None:
                         return
                     if cb_ax not in [ax.cbar.ax for ax in self.axes if ax.cbar]:
                         return
                     if cb_ax.press is None:
                         return
                     ax = [ax for ax in self.axes if cb_ax == ax.cbar.ax][0]
                     xprev, yprev = cb_ax.press
                     dx = event.x - xprev
                     dy = event.y - yprev
                     cb_ax.press = event.x, event.y
                     scale = ax.cbar.norm.vmax - ax.cbar.norm.vmin
                     perc = 0.03
                     if event.button == 1:
                         ax.cbar.norm.vmin -= (perc * scale) * numpy.sign(dy)
                         ax.cbar.norm.vmax -= (perc * scale) * numpy.sign(dy)
                     elif event.button == 3:
                         ax.cbar.norm.vmin -= (perc * scale) * numpy.sign(dy)
                         ax.cbar.norm.vmax += (perc * scale) * numpy.sign(dy)
                     ax.cbar.draw_all()
                     ax.plt.set_norm(ax.cbar.norm)
                     ax.cbar.patch.figure.canvas.draw()
                 def onBtnRelease(self, event):
                     '''
                     Event for mouse button release
                     '''
                     cb_ax = event.inaxes
                     if cb_ax is not None:
                         cb_ax.press = None
                 def __add_axes(self, ax, size='30%', pad='8%'):
                     '''
                     Add new axes to the given figure
                     '''
                     divider = make_axes_locatable(ax)
                     nax = divider.new_horizontal(size=size, pad=pad)
                     ax.figure.add_axes(nax)
                     return nax
                     self.setup()
                 def setup(self):
                     '''
                     This method should be implemented in the child class, the following
                     attributes should be set:
                     self.nrows: number of rows
                     self.ncols: number of cols
                     self.nplots: number of plots (channels or pairs)
                     self.ylabel: label for Y axes
                     self.titles: list of axes title
                     '''
                     raise(NotImplementedError, 'Implement this method in child class')
                 def fill_gaps(self, x_buffer, y_buffer, z_buffer):
                     '''
                     Create a masked array for missing data
                     '''
                     if x_buffer.shape[0] < 2:
                         return x_buffer, y_buffer, z_buffer
                     deltas = x_buffer[1:] - x_buffer[0:-1]
                     x_median = numpy.median(deltas)
                     index = numpy.where(deltas > 5 * x_median)
                     if len(index[0]) != 0:
                         z_buffer[::, index[0], ::] = self.__missing
                         z_buffer = numpy.ma.masked_inside(z_buffer,
 .99 * self.__missing,
 .01 * self.__missing)
                     return x_buffer, y_buffer, z_buffer
                 def decimate(self):
                     # dx = int(len(self.x)/self.__MAXNUMX) + 1
                     dy = int(len(self.y) / self.__MAXNUMY) + 1
                     # x = self.x[::dx]
                     x = self.x
                     y = self.y[::dy]
                     z = self.z[::, ::, ::dy]
                     return x, y, z
                 def format(self):
                     '''
                     Set min and max values, labels, ticks and titles
                     '''
                     if self.xmin is None:
                         xmin = self.min_time
                     else:
                         if self.xaxis is 'time':
                             dt = self.getDateTime(self.min_time)
                             xmin = (dt.replace(hour=int(self.xmin), minute=0, second=0) -
                                     datetime.datetime(1970, 1, 1)).total_seconds()
                             if self.data.localtime:
                                 xmin += time.timezone
                         else:
                             xmin = self.xmin
                     if self.xmax is None:
                         xmax = xmin + self.xrange * 60 * 60
                     else:
                         if self.xaxis is 'time':
                             dt = self.getDateTime(self.max_time)
                             xmax = (dt.replace(hour=int(self.xmax), minute=59, second=59) -
                                     datetime.datetime(1970, 1, 1) + datetime.timedelta(seconds=1)).total_seconds()
                             if self.data.localtime:
                                 xmax += time.timezone
                         else:
                             xmax = self.xmax
                     ymin = self.ymin if self.ymin else numpy.nanmin(self.y)
                     ymax = self.ymax if self.ymax else numpy.nanmax(self.y)
                     Y = numpy.array([10, 20, 50, 100, 200, 500, 1000, 2000])
                     i = 1 if numpy.where(ymax-ymin < Y)[0][0] < 0 else numpy.where(ymax-ymin < Y)[0][0]
                     ystep = Y[i] / 5
                     for n, ax in enumerate(self.axes):
                         if ax.firsttime:
                             ax.set_facecolor(self.bgcolor)
                             ax.yaxis.set_major_locator(MultipleLocator(ystep))
                             if self.xaxis is 'time':
                                 ax.xaxis.set_major_formatter(FuncFormatter(self.__fmtTime))
                                 ax.xaxis.set_major_locator(LinearLocator(9))
                             if self.xlabel is not None:
                                 ax.set_xlabel(self.xlabel)
                             ax.set_ylabel(self.ylabel)
                             ax.firsttime = False
                             if self.showprofile:
                                 self.pf_axes[n].set_ylim(ymin, ymax)
                                 self.pf_axes[n].set_xlim(self.zmin, self.zmax)
                                 self.pf_axes[n].set_xlabel('dB')
                                 self.pf_axes[n].grid(b=True, axis='x')
                                 [tick.set_visible(False)
                                  for tick in self.pf_axes[n].get_yticklabels()]
                             if self.colorbar:
                                 ax.cbar = plt.colorbar(
                                     ax.plt, ax=ax, fraction=0.05, pad=0.02, aspect=10)
                                 ax.cbar.ax.tick_params(labelsize=8)
                                 ax.cbar.ax.press = None
                                 if self.cb_label:
                                     ax.cbar.set_label(self.cb_label, size=8)
                                 elif self.cb_labels:
                                     ax.cbar.set_label(self.cb_labels[n], size=8)
                             else:
                                 ax.cbar = None
                         if not self.polar:
                             ax.set_xlim(xmin, xmax)
                             ax.set_ylim(ymin, ymax)
                             ax.set_title('{} - {} {}'.format(
                                 self.titles[n],
                                 self.getDateTime(self.max_time).strftime('%H:%M:%S'),
                                 self.time_label),
                                 size=8)
                         else:
                             ax.set_title('{}'.format(self.titles[n]), size=8)
                             ax.set_ylim(0, 90)
                             ax.set_yticks(numpy.arange(0, 90, 20))
                             ax.yaxis.labelpad = 40
                 def __plot(self):
                     '''
                     '''
                     log.success('Plotting', self.name)
                     self.plot()
                     self.format()
                     for n, fig in enumerate(self.figures):
                         if self.nrows == 0 or self.nplots == 0:
                             log.warning('No data', self.name)
                             fig.text(0.5, 0.5, 'No Data', fontsize='large', ha='center')
                             fig.canvas.manager.set_window_title(self.CODE)
                             continue
                         fig.tight_layout()
                         fig.canvas.manager.set_window_title('{} - {}'.format(self.title,
                                                                              self.getDateTime(self.max_time).strftime('%Y/%m/%d')))
-                        # fig.canvas.draw()
+                        fig.canvas.draw()
                         if self.save and self.data.ended:
                             channels = range(self.nrows)
                             if self.oneFigure:
                                 label = ''
                             else:
                                 label = '_{}'.format(channels[n])
                             figname = os.path.join(
                                 self.save,
                                 '{}{}_{}.png'.format(
                                     self.CODE,
                                     label,
-                                    self.getDateTime(self.saveTime).strftime('%y%m%d_%H%M%S')
+                                    self.getDateTime(self.saveTime).strftime(
+                                        '%y%m%d_%H%M%S'),
                                 )
                             )
                             log.log('Saving figure: {}'.format(figname), self.name)
                             fig.savefig(figname)
                 def plot(self):
                     '''
                     '''
                     raise(NotImplementedError, 'Implement this method in child class')
                 def run(self):
                     log.success('Starting', self.name)
                     context = zmq.Context()
                     receiver = context.socket(zmq.SUB)
                     receiver.setsockopt(zmq.SUBSCRIBE, '')
                     receiver.setsockopt(zmq.CONFLATE, self.CONFLATE)
                     if 'server' in self.kwargs['parent']:
                         receiver.connect(
                             'ipc:///tmp/{}.plots'.format(self.kwargs['parent']['server']))
                     else:
                         receiver.connect("ipc:///tmp/zmq.plots")
                     while True:
                         try:
                             self.data = receiver.recv_pyobj(flags=zmq.NOBLOCK)
                             if self.data.localtime and self.localtime:
                                 self.times = self.data.times
                             elif self.data.localtime and not self.localtime:
                                 self.times = self.data.times + time.timezone
                             elif not self.data.localtime and self.localtime:
                                 self.times = self.data.times - time.timezone
                             else:
                                 self.times = self.data.times
                             self.min_time = self.times[0]
                             self.max_time = self.times[-1]
                             if self.isConfig is False:
                                 self.__setup()
                                 self.isConfig = True
                             self.__plot()
                         except zmq.Again as e:
                             log.log('Waiting for data...')
                             if self.data:
                                 figpause(self.data.throttle)
                             else:
                                 time.sleep(2)
                 def close(self):
                     if self.data:
                         self.__plot()
             class PlotSpectraData(PlotData):
                 '''
                 Plot for Spectra data
                 '''
                 CODE = 'spc'
                 colormap = 'jro'
                 def setup(self):
                     self.nplots = len(self.data.channels)
                     self.ncols = int(numpy.sqrt(self.nplots) + 0.9)
                     self.nrows = int((1.0 * self.nplots / self.ncols) + 0.9)
                     self.width = 3.4 * self.ncols
                     self.height = 3 * self.nrows
                     self.cb_label = 'dB'
                     if self.showprofile:
                         self.width += 0.8 * self.ncols
                     self.ylabel = 'Range [Km]'
                 def plot(self):
                     if self.xaxis == "frequency":
                         x = self.data.xrange[0]
                         self.xlabel = "Frequency (kHz)"
                     elif self.xaxis == "time":
                         x = self.data.xrange[1]
                         self.xlabel = "Time (ms)"
                     else:
                         x = self.data.xrange[2]
                         self.xlabel = "Velocity (m/s)"
                     if self.CODE == 'spc_mean':
                         x = self.data.xrange[2]
                         self.xlabel = "Velocity (m/s)"
                     self.titles = []
                     y = self.data.heights
                     self.y = y
                     z = self.data['spc']
                     for n, ax in enumerate(self.axes):
                         noise = self.data['noise'][n][-1]
                         if self.CODE == 'spc_mean':
                             mean = self.data['mean'][n][-1]
                         if ax.firsttime:
                             self.xmax = self.xmax if self.xmax else numpy.nanmax(x)
                             self.xmin = self.xmin if self.xmin else -self.xmax
                             self.zmin = self.zmin if self.zmin else numpy.nanmin(z)
                             self.zmax = self.zmax if self.zmax else numpy.nanmax(z)
                             ax.plt = ax.pcolormesh(x, y, z[n].T,
                                                    vmin=self.zmin,
                                                    vmax=self.zmax,
                                                    cmap=plt.get_cmap(self.colormap)
                                                    )
                             if self.showprofile:
                                 ax.plt_profile = self.pf_axes[n].plot(
                                     self.data['rti'][n][-1], y)[0]
                                 ax.plt_noise = self.pf_axes[n].plot(numpy.repeat(noise, len(y)), y,
                                                                     color="k", linestyle="dashed", lw=1)[0]
                             if self.CODE == 'spc_mean':
                                 ax.plt_mean = ax.plot(mean, y, color='k')[0]
                         else:
                             ax.plt.set_array(z[n].T.ravel())
                             if self.showprofile:
                                 ax.plt_profile.set_data(self.data['rti'][n][-1], y)
                                 ax.plt_noise.set_data(numpy.repeat(noise, len(y)), y)
                             if self.CODE == 'spc_mean':
                                 ax.plt_mean.set_data(mean, y)
                         self.titles.append('CH {}: {:3.2f}dB'.format(n, noise))
                         self.saveTime = self.max_time
             class PlotCrossSpectraData(PlotData):
                 CODE = 'cspc'
                 zmin_coh = None
                 zmax_coh = None
                 zmin_phase = None
                 zmax_phase = None
                 def setup(self):
                     self.ncols = 4
                     self.nrows = len(self.data.pairs)
                     self.nplots = self.nrows * 4
                     self.width = 3.4 * self.ncols
                     self.height = 3 * self.nrows
                     self.ylabel = 'Range [Km]'
                     self.showprofile = False
                 def plot(self):
                     if self.xaxis == "frequency":
                         x = self.data.xrange[0]
                         self.xlabel = "Frequency (kHz)"
                     elif self.xaxis == "time":
                         x = self.data.xrange[1]
                         self.xlabel = "Time (ms)"
                     else:
                         x = self.data.xrange[2]
                         self.xlabel = "Velocity (m/s)"
                     self.titles = []
                     y = self.data.heights
                     self.y = y
                     spc = self.data['spc']
                     cspc = self.data['cspc']
                     for n in range(self.nrows):
                         noise = self.data['noise'][n][-1]
                         pair = self.data.pairs[n]
                         ax = self.axes[4 * n]
                         ax3 = self.axes[4 * n + 3]
                         if ax.firsttime:
                             self.xmax = self.xmax if self.xmax else numpy.nanmax(x)
                             self.xmin = self.xmin if self.xmin else -self.xmax
                             self.zmin = self.zmin if self.zmin else numpy.nanmin(spc)
                             self.zmax = self.zmax if self.zmax else numpy.nanmax(spc)
                             ax.plt = ax.pcolormesh(x, y, spc[pair[0]].T,
                                                    vmin=self.zmin,
                                                    vmax=self.zmax,
                                                    cmap=plt.get_cmap(self.colormap)
                                                    )
                         else:
                             ax.plt.set_array(spc[pair[0]].T.ravel())
                         self.titles.append('CH {}: {:3.2f}dB'.format(n, noise))
                         ax = self.axes[4 * n + 1]
                         if ax.firsttime:
                             ax.plt = ax.pcolormesh(x, y, spc[pair[1]].T,
                                                    vmin=self.zmin,
                                                    vmax=self.zmax,
                                                    cmap=plt.get_cmap(self.colormap)
                                                    )
                         else:
                             ax.plt.set_array(spc[pair[1]].T.ravel())
                         self.titles.append('CH {}: {:3.2f}dB'.format(n, noise))
                         out = cspc[n] / numpy.sqrt(spc[pair[0]] * spc[pair[1]])
                         coh = numpy.abs(out)
                         phase = numpy.arctan2(out.imag, out.real) * 180 / numpy.pi
                         ax = self.axes[4 * n + 2]
                         if ax.firsttime:
                             ax.plt = ax.pcolormesh(x, y, coh.T,
                                                    vmin=0,
                                                    vmax=1,
                                                    cmap=plt.get_cmap(self.colormap_coh)
                                                    )
                         else:
                             ax.plt.set_array(coh.T.ravel())
                         self.titles.append(
                             'Coherence Ch{} * Ch{}'.format(pair[0], pair[1]))
                         ax = self.axes[4 * n + 3]
                         if ax.firsttime:
                             ax.plt = ax.pcolormesh(x, y, phase.T,
                                                    vmin=-180,
                                                    vmax=180,
                                                    cmap=plt.get_cmap(self.colormap_phase)
                                                    )
                         else:
                             ax.plt.set_array(phase.T.ravel())
                         self.titles.append('Phase CH{} * CH{}'.format(pair[0], pair[1]))
                         self.saveTime = self.max_time
             class PlotSpectraMeanData(PlotSpectraData):
                 '''
                 Plot for Spectra and Mean
                 '''
                 CODE = 'spc_mean'
                 colormap = 'jro'
             class PlotRTIData(PlotData):
                 '''
                 Plot for RTI data
                 '''
                 CODE = 'rti'
                 colormap = 'jro'
                 def setup(self):
                     self.xaxis = 'time'
                     self.ncols = 1
                     self.nrows = len(self.data.channels)
                     self.nplots = len(self.data.channels)
                     self.ylabel = 'Range [Km]'
                     self.cb_label = 'dB'
                     self.titles = ['{} Channel {}'.format(
                         self.CODE.upper(), x) for x in range(self.nrows)]
                 def plot(self):
                     self.x = self.times
                     self.y = self.data.heights
                     self.z = self.data[self.CODE]
                     self.z = numpy.ma.masked_invalid(self.z)
                     for n, ax in enumerate(self.axes):
                         x, y, z = self.fill_gaps(*self.decimate())
                         self.zmin = self.zmin if self.zmin else numpy.min(self.z)
                         self.zmax = self.zmax if self.zmax else numpy.max(self.z)
                         if ax.firsttime:
                             ax.plt = ax.pcolormesh(x, y, z[n].T,
                                                    vmin=self.zmin,
                                                    vmax=self.zmax,
                                                    cmap=plt.get_cmap(self.colormap)
                                                    )
                             if self.showprofile:
                                 ax.plot_profile = self.pf_axes[n].plot(
                                     self.data['rti'][n][-1], self.y)[0]
                                 ax.plot_noise = self.pf_axes[n].plot(numpy.repeat(self.data['noise'][n][-1], len(self.y)), self.y,
                                                                      color="k", linestyle="dashed", lw=1)[0]
                         else:
                             ax.collections.remove(ax.collections[0])
                             ax.plt = ax.pcolormesh(x, y, z[n].T,
                                                    vmin=self.zmin,
                                                    vmax=self.zmax,
                                                    cmap=plt.get_cmap(self.colormap)
                                                    )
                             if self.showprofile:
                                 ax.plot_profile.set_data(self.data['rti'][n][-1], self.y)
                                 ax.plot_noise.set_data(numpy.repeat(
                                     self.data['noise'][n][-1], len(self.y)), self.y)
                     self.saveTime = self.min_time
             class PlotCOHData(PlotRTIData):
                 '''
                 Plot for Coherence data
                 '''
                 CODE = 'coh'
                 def setup(self):
                     self.xaxis = 'time'
                     self.ncols = 1
                     self.nrows = len(self.data.pairs)
                     self.nplots = len(self.data.pairs)
                     self.ylabel = 'Range [Km]'
                     if self.CODE == 'coh':
                         self.cb_label = ''
                         self.titles = [
                             'Coherence Map Ch{} * Ch{}'.format(x[0], x[1]) for x in self.data.pairs]
                     else:
                         self.cb_label = 'Degrees'
                         self.titles = [
                             'Phase Map Ch{} * Ch{}'.format(x[0], x[1]) for x in self.data.pairs]
             class PlotPHASEData(PlotCOHData):
                 '''
                 Plot for Phase map data
                 '''
                 CODE = 'phase'
                 colormap = 'seismic'
             class PlotNoiseData(PlotData):
                 '''
                 Plot for noise
                 '''
                 CODE = 'noise'
                 def setup(self):
                     self.xaxis = 'time'
                     self.ncols = 1
                     self.nrows = 1
                     self.nplots = 1
                     self.ylabel = 'Intensity [dB]'
                     self.titles = ['Noise']
                     self.colorbar = False
                 def plot(self):
                     x = self.times
                     xmin = self.min_time
                     xmax = xmin + self.xrange * 60 * 60
                     Y = self.data[self.CODE]
                     if self.axes[0].firsttime:
                         for ch in self.data.channels:
                             y = Y[ch]
                             self.axes[0].plot(x, y, lw=1, label='Ch{}'.format(ch))
                         plt.legend()
                     else:
                         for ch in self.data.channels:
                             y = Y[ch]
                             self.axes[0].lines[ch].set_data(x, y)
                     self.ymin = numpy.nanmin(Y) - 5
                     self.ymax = numpy.nanmax(Y) + 5
                     self.saveTime = self.min_time
             class PlotSNRData(PlotRTIData):
                 '''
                 Plot for SNR Data
                 '''
                 CODE = 'snr'
                 colormap = 'jet'
             class PlotDOPData(PlotRTIData):
                 '''
                 Plot for DOPPLER Data
                 '''
                 CODE = 'dop'
                 colormap = 'jet'
             class PlotSkyMapData(PlotData):
                 '''
                 Plot for meteors detection data
                 '''
                 CODE = 'param'
                 def setup(self):
                     self.ncols = 1
                     self.nrows = 1
                     self.width = 7.2
                     self.height = 7.2
                     self.nplots = 1
                     self.xlabel = 'Zonal Zenith Angle (deg)'
                     self.ylabel = 'Meridional Zenith Angle (deg)'
                     self.polar = True
                     self.ymin = -180
                     self.ymax = 180
                     self.colorbar = False
                 def plot(self):
                     arrayParameters = numpy.concatenate(self.data['param'])
                     error = arrayParameters[:, -1]
                     indValid = numpy.where(error == 0)[0]
                     finalMeteor = arrayParameters[indValid, :]
                     finalAzimuth = finalMeteor[:, 3]
                     finalZenith = finalMeteor[:, 4]
                     x = finalAzimuth * numpy.pi / 180
                     y = finalZenith
                     ax = self.axes[0]
                     if ax.firsttime:
                         ax.plot = ax.plot(x, y, 'bo', markersize=5)[0]
                     else:
                         ax.plot.set_data(x, y)
                     dt1 = self.getDateTime(self.min_time).strftime('%y/%m/%d %H:%M:%S')
                     dt2 = self.getDateTime(self.max_time).strftime('%y/%m/%d %H:%M:%S')
                     title = 'Meteor Detection Sky Map\n %s - %s \n Number of events: %5.0f\n' % (dt1,
                                                                                                  dt2,
                                                                                                  len(x))
                     self.titles[0] = title
                     self.saveTime = self.max_time
             class PlotParamData(PlotRTIData):
                 '''
                 Plot for data_param object
                 '''
                 CODE = 'param'
                 colormap = 'seismic'
                 def setup(self):
                     self.xaxis = 'time'
                     self.ncols = 1
                     self.nrows = self.data.shape(self.CODE)[0]
                     self.nplots = self.nrows
                     if self.showSNR:
                         self.nrows += 1
                         self.nplots += 1
                     self.ylabel = 'Height [Km]'
-                    self.titles = self.data.parameters \
+                    if not self.titles:
-                        if self.data.parameters else ['Param {}'.format(x) for x in xrange(self.nrows)]
+                        self.titles = self.data.parameters \
-                    if self.showSNR:
+                            if self.data.parameters else ['Param {}'.format(x) for x in xrange(self.nrows)]
-                        self.titles.append('SNR')
+                        if self.showSNR:
+                            self.titles.append('SNR')
                 def plot(self):
                     self.data.normalize_heights()
                     self.x = self.times
                     self.y = self.data.heights
                     if self.showSNR:
                         self.z = numpy.concatenate(
                             (self.data[self.CODE], self.data['snr'])
                         )
                     else:
                         self.z = self.data[self.CODE]
                     self.z = numpy.ma.masked_invalid(self.z)
                     for n, ax in enumerate(self.axes):
                         x, y, z = self.fill_gaps(*self.decimate())
                         self.zmax = self.zmax if self.zmax is not None else numpy.max(
                             self.z[n])
                         self.zmin = self.zmin if self.zmin is not None else numpy.min(
                             self.z[n])
                         if ax.firsttime:
                             if self.zlimits is not None:
                                 self.zmin, self.zmax = self.zlimits[n]
                             ax.plt = ax.pcolormesh(x, y, z[n].T * self.factors[n],
                                                    vmin=self.zmin,
                                                    vmax=self.zmax,
                                                    cmap=self.cmaps[n]
                                                    )
                         else:
                             if self.zlimits is not None:
                                 self.zmin, self.zmax = self.zlimits[n]
                             ax.collections.remove(ax.collections[0])
                             ax.plt = ax.pcolormesh(x, y, z[n].T * self.factors[n],
                                                    vmin=self.zmin,
                                                    vmax=self.zmax,
                                                    cmap=self.cmaps[n]
                                                    )
                     self.saveTime = self.min_time
             class PlotOutputData(PlotParamData):
                 '''
                 Plot data_output object
                 '''
                 CODE = 'output'
                 colormap = 'seismic'

schainpy/model/io/__init__.py +1 0

             '''
             $Author: murco $
             $Id: JRODataIO.py 169 2012-11-19 21:57:03Z murco $
             '''
             from jroIO_voltage import *
             from jroIO_spectra import *
             from jroIO_heispectra import *
             from jroIO_usrp import *
             from jroIO_digitalRF import *
             from jroIO_kamisr import *
             from jroIO_param import *
             from jroIO_hf import *
             from jroIO_madrigal import *
             from bltrIO_param import *
             from jroIO_bltr import *
             from jroIO_mira35c import *
+            from julIO_param import *
  No newline at end of file

schainpy/model/utils/jroutils_publish.py +4 -5

             '''
             @author: Juan C. Espinoza
             '''
             import time
             import json
             import numpy
             import paho.mqtt.client as mqtt
             import zmq
             import datetime
             from zmq.utils.monitor import recv_monitor_message
             from functools import wraps
             from threading import Thread
             from multiprocessing import Process
             from schainpy.model.proc.jroproc_base import Operation, ProcessingUnit
             from schainpy.model.data.jrodata import JROData
             from schainpy.utils import log
             MAXNUMX = 100
             MAXNUMY = 100
             class PrettyFloat(float):
                 def __repr__(self):
                     return '%.2f' % self
             def roundFloats(obj):
                 if isinstance(obj, list):
                     return map(roundFloats, obj)
                 elif isinstance(obj, float):
                     return round(obj, 2)
             def decimate(z, MAXNUMY):
                 dy = int(len(z[0])/MAXNUMY) + 1
                 return z[::, ::dy]
             class throttle(object):
                 '''
                 Decorator that prevents a function from being called more than once every
                 time period.
                 To create a function that cannot be called more than once a minute, but
                 will sleep until it can be called:
                 @throttle(minutes=1)
                 def foo():
                   pass
                 for i in range(10):
                   foo()
                   print "This function has run %s times." % i
                 '''
                 def __init__(self, seconds=0, minutes=0, hours=0):
                     self.throttle_period = datetime.timedelta(
                         seconds=seconds, minutes=minutes, hours=hours
                     )
                     self.time_of_last_call = datetime.datetime.min
                 def __call__(self, fn):
                     @wraps(fn)
                     def wrapper(*args, **kwargs):
                         coerce = kwargs.pop('coerce', None)
                         if coerce:
                             self.time_of_last_call = datetime.datetime.now()
                             return fn(*args, **kwargs)
                         else:
                             now = datetime.datetime.now()
                             time_since_last_call = now - self.time_of_last_call
                             time_left = self.throttle_period - time_since_last_call
                             if time_left > datetime.timedelta(seconds=0):
                                 return
                         self.time_of_last_call = datetime.datetime.now()
                         return fn(*args, **kwargs)
                     return wrapper
             class Data(object):
                 '''
                 Object to hold data to be plotted
                 '''
                 def __init__(self, plottypes, throttle_value):
                     self.plottypes = plottypes
                     self.throttle = throttle_value
                     self.ended = False
                     self.localtime = False
                     self.__times = []
                     self.__heights = []
                 def __str__(self):
                     dum = ['{}{}'.format(key, self.shape(key)) for key in self.data]
                     return 'Data[{}][{}]'.format(';'.join(dum), len(self.__times))
                 def __len__(self):
                     return len(self.__times)
                 def __getitem__(self, key):
                     if key not in self.data:
                         raise KeyError(log.error('Missing key: {}'.format(key)))
                     if 'spc' in key:
                         ret = self.data[key]
                     else:
                         ret = numpy.array([self.data[key][x] for x in self.times])
                         if ret.ndim > 1:
                             ret = numpy.swapaxes(ret, 0, 1)
                     return ret
                 def __contains__(self, key):
                     return key in self.data
                 def setup(self):
                     '''
                     Configure object
                     '''
                     self.ended = False
                     self.data = {}
                     self.__times = []
                     self.__heights = []
                     self.__all_heights = set()
                     for plot in self.plottypes:
                         if 'snr' in plot:
                             plot = 'snr'
                         self.data[plot] = {}
                 def shape(self, key):
                     '''
                     Get the shape of the one-element data for the given key
                     '''
                     if len(self.data[key]):
                         if 'spc' in key:
                             return self.data[key].shape
                         return self.data[key][self.__times[0]].shape
                     return (0,)
-                def update(self, dataOut):
+                def update(self, dataOut, tm):
                     '''
                     Update data object with new dataOut
                     '''
-                    tm = dataOut.utctime
                     if tm in self.__times:
                         return
                     self.parameters = getattr(dataOut, 'parameters', [])
                     self.pairs = dataOut.pairsList
                     self.channels = dataOut.channelList
                     self.interval = dataOut.getTimeInterval()
                     self.localtime = dataOut.useLocalTime
                     if 'spc' in self.plottypes or 'cspc' in self.plottypes:
                         self.xrange = (dataOut.getFreqRange(1)/1000., dataOut.getAcfRange(1), dataOut.getVelRange(1))
                     self.__heights.append(dataOut.heightList)
                     self.__all_heights.update(dataOut.heightList)
                     self.__times.append(tm)
                     for plot in self.plottypes:
                         if plot == 'spc':
                             z = dataOut.data_spc/dataOut.normFactor
                             self.data[plot] = 10*numpy.log10(z)
                         if plot == 'cspc':
                             self.data[plot] = dataOut.data_cspc
                         if plot == 'noise':
                             self.data[plot][tm] = 10*numpy.log10(dataOut.getNoise()/dataOut.normFactor)
                         if plot == 'rti':
                             self.data[plot][tm] = dataOut.getPower()
                         if plot == 'snr_db':
                             self.data['snr'][tm] = dataOut.data_SNR
                         if plot == 'snr':
                             self.data[plot][tm] = 10*numpy.log10(dataOut.data_SNR)
                         if plot == 'dop':
                             self.data[plot][tm] = 10*numpy.log10(dataOut.data_DOP)
                         if plot == 'mean':
                             self.data[plot][tm] = dataOut.data_MEAN
                         if plot == 'std':
                             self.data[plot][tm] = dataOut.data_STD
                         if plot == 'coh':
                             self.data[plot][tm] = dataOut.getCoherence()
                         if plot == 'phase':
                             self.data[plot][tm] = dataOut.getCoherence(phase=True)
                         if plot == 'output':
                             self.data[plot][tm] = dataOut.data_output
                         if plot == 'param':
                             self.data[plot][tm] = dataOut.data_param
                 def normalize_heights(self):
                     '''
                     Ensure same-dimension of the data for different heighList
                     '''
                     H = numpy.array(list(self.__all_heights))
                     H.sort()
                     for key in self.data:
                         shape = self.shape(key)[:-1] + H.shape
                         for tm, obj in self.data[key].items():
                             h = self.__heights[self.__times.index(tm)]
                             if H.size == h.size:
                                 continue
                             index = numpy.where(numpy.in1d(H, h))[0]
                             dummy = numpy.zeros(shape) + numpy.nan
                             if len(shape) == 2:
                                 dummy[:, index] = obj
                             else:
                                 dummy[index] = obj
                             self.data[key][tm] = dummy
                     self.__heights = [H for tm in self.__times]
                 def jsonify(self, decimate=False):
                     '''
                     Convert data to json
                     '''
                     ret = {}
                     tm = self.times[-1]
                     for key, value in self.data:
                         if key in ('spc', 'cspc'):
                             ret[key] = roundFloats(self.data[key].to_list())
                         else:
                             ret[key] = roundFloats(self.data[key][tm].to_list())
                     ret['timestamp'] = tm
                     ret['interval'] = self.interval
                 @property
                 def times(self):
                     '''
                     Return the list of times of the current data
                     '''
                     ret = numpy.array(self.__times)
                     ret.sort()
                     return ret
                 @property
                 def heights(self):
                     '''
                     Return the list of heights of the current data
                     '''
                     return numpy.array(self.__heights[-1])
             class PublishData(Operation):
                 '''
                 Operation to send data over zmq.
                 '''
                 __attrs__ = ['host', 'port', 'delay', 'zeromq', 'mqtt', 'verbose']
                 def __init__(self, **kwargs):
                     """Inicio."""
                     Operation.__init__(self, **kwargs)
                     self.isConfig = False
                     self.client = None
                     self.zeromq = None
                     self.mqtt = None
                 def on_disconnect(self, client, userdata, rc):
                     if rc != 0:
                         log.warning('Unexpected disconnection.')
                     self.connect()
                 def connect(self):
                     log.warning('trying to connect')
                     try:
                         self.client.connect(
                             host=self.host,
                             port=self.port,
                             keepalive=60*10,
                             bind_address='')
                         self.client.loop_start()
                         # self.client.publish(
                         #     self.topic + 'SETUP',
                         #     json.dumps(setup),
                         #     retain=True
                         #     )
                     except:
                         log.error('MQTT Conection error.')
                         self.client = False
                 def setup(self, port=1883, username=None, password=None, clientId="user", zeromq=1, verbose=True, **kwargs):
                     self.counter = 0
                     self.topic = kwargs.get('topic', 'schain')
                     self.delay = kwargs.get('delay', 0)
                     self.plottype = kwargs.get('plottype', 'spectra')
                     self.host = kwargs.get('host', "10.10.10.82")
                     self.port = kwargs.get('port', 3000)
                     self.clientId = clientId
                     self.cnt = 0
                     self.zeromq = zeromq
                     self.mqtt = kwargs.get('plottype', 0)
                     self.client = None
                     self.verbose = verbose
                     setup = []
                     if mqtt is 1:
                         self.client = mqtt.Client(
                             client_id=self.clientId + self.topic + 'SCHAIN',
                             clean_session=True)
                         self.client.on_disconnect = self.on_disconnect
                         self.connect()
                         for plot in self.plottype:
                             setup.append({
                                 'plot': plot,
                                 'topic': self.topic + plot,
                                 'title': getattr(self, plot + '_' + 'title', False),
                                 'xlabel': getattr(self, plot + '_' + 'xlabel', False),
                                 'ylabel': getattr(self, plot + '_' + 'ylabel', False),
                                 'xrange': getattr(self, plot + '_' + 'xrange', False),
                                 'yrange': getattr(self, plot + '_' + 'yrange', False),
                                 'zrange': getattr(self, plot + '_' + 'zrange', False),
                             })
                     if zeromq is 1:
                         context = zmq.Context()
                         self.zmq_socket = context.socket(zmq.PUSH)
                         server = kwargs.get('server', 'zmq.pipe')
                         if 'tcp://' in server:
                             address = server
                         else:
                             address = 'ipc:///tmp/%s' % server
                         self.zmq_socket.connect(address)
                         time.sleep(1)
                 def publish_data(self):
                     self.dataOut.finished = False
                     if self.mqtt is 1:
                         yData = self.dataOut.heightList[:2].tolist()
                         if self.plottype == 'spectra':
                             data = getattr(self.dataOut, 'data_spc')
                             z = data/self.dataOut.normFactor
                             zdB = 10*numpy.log10(z)
                             xlen, ylen = zdB[0].shape
                             dx = int(xlen/MAXNUMX) + 1
                             dy = int(ylen/MAXNUMY) + 1
                             Z = [0 for i in self.dataOut.channelList]
                             for i in self.dataOut.channelList:
                                 Z[i] = zdB[i][::dx, ::dy].tolist()
                             payload = {
                                 'timestamp': self.dataOut.utctime,
                                 'data': roundFloats(Z),
                                 'channels': ['Ch %s' % ch for ch in self.dataOut.channelList],
                                 'interval': self.dataOut.getTimeInterval(),
                                 'type': self.plottype,
                                 'yData': yData
                             }
                         elif self.plottype in ('rti', 'power'):
                             data = getattr(self.dataOut, 'data_spc')
                             z = data/self.dataOut.normFactor
                             avg = numpy.average(z, axis=1)
                             avgdB = 10*numpy.log10(avg)
                             xlen, ylen = z[0].shape
                             dy = numpy.floor(ylen/self.__MAXNUMY) + 1
                             AVG = [0 for i in self.dataOut.channelList]
                             for i in self.dataOut.channelList:
                                 AVG[i] = avgdB[i][::dy].tolist()
                             payload = {
                                 'timestamp': self.dataOut.utctime,
                                 'data': roundFloats(AVG),
                                 'channels': ['Ch %s' % ch for ch in self.dataOut.channelList],
                                 'interval': self.dataOut.getTimeInterval(),
                                 'type': self.plottype,
                                 'yData': yData
                             }
                         elif self.plottype == 'noise':
                             noise = self.dataOut.getNoise()/self.dataOut.normFactor
                             noisedB = 10*numpy.log10(noise)
                             payload = {
                                 'timestamp': self.dataOut.utctime,
                                 'data': roundFloats(noisedB.reshape(-1, 1).tolist()),
                                 'channels': ['Ch %s' % ch for ch in self.dataOut.channelList],
                                 'interval': self.dataOut.getTimeInterval(),
                                 'type': self.plottype,
                                 'yData': yData
                             }
                         elif self.plottype == 'snr':
                             data = getattr(self.dataOut, 'data_SNR')
                             avgdB = 10*numpy.log10(data)
                             ylen = data[0].size
                             dy = numpy.floor(ylen/self.__MAXNUMY) + 1
                             AVG = [0 for i in self.dataOut.channelList]
                             for i in self.dataOut.channelList:
                                 AVG[i] = avgdB[i][::dy].tolist()
                             payload = {
                                 'timestamp': self.dataOut.utctime,
                                 'data': roundFloats(AVG),
                                 'channels': ['Ch %s' % ch for ch in self.dataOut.channelList],
                                 'type': self.plottype,
                                 'yData': yData
                             }
                         else:
                             print "Tipo de grafico invalido"
                             payload = {
                                 'data': 'None',
                                 'timestamp': 'None',
                                 'type': None
                             }
                         self.client.publish(self.topic + self.plottype, json.dumps(payload), qos=0)
                     if self.zeromq is 1:
                         if self.verbose:
                             log.log(
                                 'Sending {} - {}'.format(self.dataOut.type, self.dataOut.datatime),
                                 self.name
                             )
                         self.zmq_socket.send_pyobj(self.dataOut)
                 def run(self, dataOut, **kwargs):
                     self.dataOut = dataOut
                     if not self.isConfig:
                         self.setup(**kwargs)
                         self.isConfig = True
                     self.publish_data()
                     time.sleep(self.delay)
                 def close(self):
                     if self.zeromq is 1:
                         self.dataOut.finished = True
                         self.zmq_socket.send_pyobj(self.dataOut)
                         time.sleep(0.1)
                         self.zmq_socket.close()
                     if self.client:
                         self.client.loop_stop()
                         self.client.disconnect()
             class ReceiverData(ProcessingUnit):
                 __attrs__ = ['server']
                 def __init__(self, **kwargs):
                     ProcessingUnit.__init__(self, **kwargs)
                     self.isConfig = False
                     server = kwargs.get('server', 'zmq.pipe')
                     if 'tcp://' in server:
                         address = server
                     else:
                         address = 'ipc:///tmp/%s' % server
                     self.address = address
                     self.dataOut = JROData()
                 def setup(self):
                     self.context = zmq.Context()
                     self.receiver = self.context.socket(zmq.PULL)
                     self.receiver.bind(self.address)
                     time.sleep(0.5)
                     log.success('ReceiverData from {}'.format(self.address))
                 def run(self):
                     if not self.isConfig:
                         self.setup()
                         self.isConfig = True
                     self.dataOut = self.receiver.recv_pyobj()
                     log.log('{} - {}'.format(self.dataOut.type,
                                              self.dataOut.datatime.ctime(),),
                             'Receiving')
             class PlotterReceiver(ProcessingUnit, Process):
                 throttle_value = 5
                 __attrs__ = ['server', 'plottypes', 'realtime', 'localtime', 'throttle']
                 def __init__(self, **kwargs):
                     ProcessingUnit.__init__(self, **kwargs)
                     Process.__init__(self)
                     self.mp = False
                     self.isConfig = False
                     self.isWebConfig = False
                     self.connections = 0
                     server = kwargs.get('server', 'zmq.pipe')
                     plot_server = kwargs.get('plot_server', 'zmq.web')
                     if 'tcp://' in server:
                         address = server
                     else:
                         address = 'ipc:///tmp/%s' % server
                     if 'tcp://' in plot_server:
                         plot_address = plot_server
                     else:
                         plot_address = 'ipc:///tmp/%s' % plot_server
                     self.address = address
                     self.plot_address = plot_address
                     self.plottypes = [s.strip() for s in kwargs.get('plottypes', 'rti').split(',')]
                     self.realtime = kwargs.get('realtime', False)
                     self.localtime = kwargs.get('localtime', True)
                     self.throttle_value = kwargs.get('throttle', 5)
                     self.sendData = self.initThrottle(self.throttle_value)
                     self.dates = []
                     self.setup()
                 def setup(self):
                     self.data = Data(self.plottypes, self.throttle_value)
                     self.isConfig = True
                 def event_monitor(self, monitor):
                     events = {}
                     for name in dir(zmq):
                         if name.startswith('EVENT_'):
                             value = getattr(zmq, name)
                             events[value] = name
                     while monitor.poll():
                         evt = recv_monitor_message(monitor)
                         if evt['event'] == 32:
                             self.connections += 1
                         if evt['event'] == 512:
                             pass
                         evt.update({'description': events[evt['event']]})
                         if evt['event'] == zmq.EVENT_MONITOR_STOPPED:
                             break
                     monitor.close()
                     print('event monitor thread done!')
                 def initThrottle(self, throttle_value):
                     @throttle(seconds=throttle_value)
                     def sendDataThrottled(fn_sender, data):
                         fn_sender(data)
                     return sendDataThrottled
                 def send(self, data):
                     log.success('Sending {}'.format(data), self.name)
                     self.sender.send_pyobj(data)
                 def run(self):
                     log.success(
                         'Starting from {}'.format(self.address),
                         self.name
                     )
                     self.context = zmq.Context()
                     self.receiver = self.context.socket(zmq.PULL)
                     self.receiver.bind(self.address)
                     monitor = self.receiver.get_monitor_socket()
                     self.sender = self.context.socket(zmq.PUB)
                     if self.realtime:
                         self.sender_web = self.context.socket(zmq.PUB)
                         self.sender_web.connect(self.plot_address)
                         time.sleep(1)
                     if 'server' in self.kwargs:
                         self.sender.bind("ipc:///tmp/{}.plots".format(self.kwargs['server']))
                     else:
                         self.sender.bind("ipc:///tmp/zmq.plots")
                     time.sleep(2)
                     t = Thread(target=self.event_monitor, args=(monitor,))
                     t.start()
                     while True:
                         dataOut = self.receiver.recv_pyobj()
                         if not dataOut.flagNoData:
                             if dataOut.type == 'Parameters':
                                 tm = dataOut.utctimeInit
                             else:
                                 tm = dataOut.utctime
                             if dataOut.useLocalTime:
                                 if not self.localtime:
                                     tm += time.timezone
                                 dt = datetime.datetime.fromtimestamp(tm).date()
                             else:
                                 if self.localtime:
                                     tm -= time.timezone
                                 dt = datetime.datetime.utcfromtimestamp(tm).date()
                             coerce = False
                             if dt not in self.dates:
                                 if self.data:
                                     self.data.ended = True
                                     self.send(self.data)
                                     coerce = True
                                 self.data.setup()
                                 self.dates.append(dt)
-                            self.data.update(dataOut)
+                            self.data.update(dataOut, tm)
                         if dataOut.finished is True:
                             self.connections -= 1
                             if self.connections == 0 and dt in self.dates:
                                 self.data.ended = True
                                 self.send(self.data)
                                 self.data.setup()
                         else:
                             if self.realtime:
                                 self.send(self.data)
                                 # self.sender_web.send_string(self.data.jsonify())
                             else:
                                 self.sendData(self.send, self.data, coerce=coerce)
                                 coerce = False
                     return
                 def sendToWeb(self):
                     if not self.isWebConfig:
                         context = zmq.Context()
                         sender_web_config = context.socket(zmq.PUB)
                         if 'tcp://' in self.plot_address:
                             dum, address, port = self.plot_address.split(':')
                             conf_address = '{}:{}:{}'.format(dum, address, int(port)+1)
                         else:
                             conf_address = self.plot_address + '.config'
                         sender_web_config.bind(conf_address)
                         time.sleep(1)
                         for kwargs in self.operationKwargs.values():
                             if 'plot' in kwargs:
                                 log.success('[Sending] Config data to web for {}'.format(kwargs['code'].upper()))
                                 sender_web_config.send_string(json.dumps(kwargs))
                         self.isWebConfig = True

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g 0-9	Goto bookmarked items from 0-9
n r	New repository page
n g	New gist page

	Repositories
g s	Goto summary page
g c	Goto changelog page
g f	Goto files page
g F	Goto files page with file search activated
g p	Goto pull requests page
g o	Goto repository settings
g O	Goto repository access permissions settings
t s	Toggle sidebar on some pages