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1 | ''' | |||
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2 | Created on Nov 9, 2016 | |||
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3 | ||||
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4 | @author: roj- LouVD | |||
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5 | ''' | |||
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6 | ||||
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7 | ||||
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8 | import os | |||
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9 | import sys | |||
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10 | import time | |||
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11 | import glob | |||
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12 | import datetime | |||
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13 | import numpy | |||
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14 | ||||
|
15 | from schainpy.model.proc.jroproc_base import ProcessingUnit | |||
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16 | from schainpy.model.data.jrodata import Parameters | |||
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17 | from schainpy.model.io.jroIO_base import JRODataReader, isNumber | |||
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18 | ||||
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19 | FILE_HEADER_STRUCTURE = numpy.dtype([ | |||
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20 | ('FMN', '<u4'), | |||
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21 | ('nrec', '<u4'), | |||
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22 | ('fr_offset', '<u4'), | |||
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23 | ('id', '<u4'), | |||
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24 | ('site', 'u1', (32,)) | |||
|
25 | ]) | |||
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26 | ||||
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27 | REC_HEADER_STRUCTURE = numpy.dtype([ | |||
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28 | ('rmn', '<u4'), | |||
|
29 | ('rcounter', '<u4'), | |||
|
30 | ('nr_offset', '<u4'), | |||
|
31 | ('tr_offset', '<u4'), | |||
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32 | ('time', '<u4'), | |||
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33 | ('time_msec', '<u4'), | |||
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34 | ('tag', 'u1', (32,)), | |||
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35 | ('comments', 'u1', (32,)), | |||
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36 | ('lat', '<f4'), | |||
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37 | ('lon', '<f4'), | |||
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38 | ('gps_status', '<u4'), | |||
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39 | ('freq', '<u4'), | |||
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40 | ('freq0', '<u4'), | |||
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41 | ('nchan', '<u4'), | |||
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42 | ('delta_r', '<u4'), | |||
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43 | ('nranges', '<u4'), | |||
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44 | ('r0', '<u4'), | |||
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45 | ('prf', '<u4'), | |||
|
46 | ('ncoh', '<u4'), | |||
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47 | ('npoints', '<u4'), | |||
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48 | ('polarization', '<i4'), | |||
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49 | ('rx_filter', '<u4'), | |||
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50 | ('nmodes', '<u4'), | |||
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51 | ('dmode_index', '<u4'), | |||
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52 | ('dmode_rngcorr', '<u4'), | |||
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53 | ('nrxs', '<u4'), | |||
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54 | ('acf_length', '<u4'), | |||
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55 | ('acf_lags', '<u4'), | |||
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56 | ('sea_to_atmos', '<f4'), | |||
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57 | ('sea_notch', '<u4'), | |||
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58 | ('lh_sea', '<u4'), | |||
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59 | ('hh_sea', '<u4'), | |||
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60 | ('nbins_sea', '<u4'), | |||
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61 | ('min_snr', '<f4'), | |||
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62 | ('min_cc', '<f4'), | |||
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63 | ('max_time_diff', '<f4') | |||
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64 | ]) | |||
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65 | ||||
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66 | DATA_STRUCTURE = numpy.dtype([ | |||
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67 | ('range', '<u4'), | |||
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68 | ('status', '<u4'), | |||
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69 | ('zonal', '<f4'), | |||
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70 | ('meridional', '<f4'), | |||
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71 | ('vertical', '<f4'), | |||
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72 | ('zonal_a', '<f4'), | |||
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73 | ('meridional_a', '<f4'), | |||
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74 | ('corrected_fading', '<f4'), # seconds | |||
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75 | ('uncorrected_fading', '<f4'), # seconds | |||
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76 | ('time_diff', '<f4'), | |||
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77 | ('major_axis', '<f4'), | |||
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78 | ('axial_ratio', '<f4'), | |||
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79 | ('orientation', '<f4'), | |||
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80 | ('sea_power', '<u4'), | |||
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81 | ('sea_algorithm', '<u4') | |||
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82 | ]) | |||
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83 | ||||
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84 | class BLTRParamReader(JRODataReader, ProcessingUnit): | |||
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85 | ''' | |||
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86 | Boundary Layer and Tropospheric Radar (BLTR) reader, Wind velocities and SNR from *.sswma files | |||
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87 | ''' | |||
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88 | ||||
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89 | ext = '.sswma' | |||
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90 | ||||
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91 | def __init__(self, **kwargs): | |||
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92 | ||||
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93 | ProcessingUnit.__init__(self , **kwargs) | |||
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94 | ||||
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95 | self.dataOut = Parameters() | |||
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96 | self.counter_records = 0 | |||
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97 | self.flagNoMoreFiles = 0 | |||
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98 | self.isConfig = False | |||
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99 | self.filename = None | |||
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100 | ||||
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101 | def setup(self, | |||
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102 | path=None, | |||
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103 | startDate=None, | |||
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104 | endDate=None, | |||
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105 | ext=None, | |||
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106 | startTime=datetime.time(0, 0, 0), | |||
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107 | endTime=datetime.time(23, 59, 59), | |||
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108 | timezone=0, | |||
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109 | status_value=0, | |||
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110 | **kwargs): | |||
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111 | ||||
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112 | self.path = path | |||
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113 | self.startTime = startTime | |||
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114 | self.endTime = endTime | |||
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115 | self.status_value = status_value | |||
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116 | ||||
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117 | if self.path is None: | |||
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118 | raise ValueError, "The path is not valid" | |||
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119 | ||||
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120 | if ext is None: | |||
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121 | ext = self.ext | |||
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122 | ||||
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123 | self.search_files(self.path, startDate, endDate, ext) | |||
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124 | self.timezone = timezone | |||
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125 | self.fileIndex = 0 | |||
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126 | ||||
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127 | if not self.fileList: | |||
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128 | raise Warning, "There is no files matching these date in the folder: %s. \n Check 'startDate' and 'endDate' "%(path) | |||
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129 | ||||
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130 | self.setNextFile() | |||
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131 | ||||
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132 | def search_files(self, path, startDate, endDate, ext): | |||
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133 | ''' | |||
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134 | Searching for BLTR rawdata file in path | |||
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135 | Creating a list of file to proces included in [startDate,endDate] | |||
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136 | ||||
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137 | Input: | |||
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138 | path - Path to find BLTR rawdata files | |||
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139 | startDate - Select file from this date | |||
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140 | enDate - Select file until this date | |||
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141 | ext - Extension of the file to read | |||
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142 | ||||
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143 | ''' | |||
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144 | ||||
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145 | print 'Searching file in %s ' % (path) | |||
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146 | foldercounter = 0 | |||
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147 | fileList0 = glob.glob1(path, "*%s" % ext) | |||
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148 | fileList0.sort() | |||
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149 | ||||
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150 | self.fileList = [] | |||
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151 | self.dateFileList = [] | |||
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152 | ||||
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153 | for thisFile in fileList0: | |||
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154 | year = thisFile[-14:-10] | |||
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155 | if not isNumber(year): | |||
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156 | continue | |||
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157 | ||||
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158 | month = thisFile[-10:-8] | |||
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159 | if not isNumber(month): | |||
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160 | continue | |||
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161 | ||||
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162 | day = thisFile[-8:-6] | |||
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163 | if not isNumber(day): | |||
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164 | continue | |||
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165 | ||||
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166 | year, month, day = int(year), int(month), int(day) | |||
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167 | dateFile = datetime.date(year, month, day) | |||
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168 | ||||
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169 | if (startDate > dateFile) or (endDate < dateFile): | |||
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170 | continue | |||
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171 | ||||
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172 | self.fileList.append(thisFile) | |||
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173 | self.dateFileList.append(dateFile) | |||
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174 | ||||
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175 | return | |||
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176 | ||||
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177 | def setNextFile(self): | |||
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178 | ||||
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179 | file_id = self.fileIndex | |||
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180 | ||||
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181 | if file_id == len(self.fileList): | |||
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182 | print '\nNo more files in the folder' | |||
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183 | print 'Total number of file(s) read : {}'.format(self.fileIndex + 1) | |||
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184 | self.flagNoMoreFiles = 1 | |||
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185 | return 0 | |||
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186 | ||||
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187 | print '\n[Setting file] (%s) ...' % self.fileList[file_id] | |||
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188 | filename = os.path.join(self.path, self.fileList[file_id]) | |||
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189 | ||||
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190 | dirname, name = os.path.split(filename) | |||
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191 | self.siteFile = name.split('.')[0] # 'peru2' ---> Piura - 'peru1' ---> Huancayo or Porcuya | |||
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192 | if self.filename is not None: | |||
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193 | self.fp.close() | |||
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194 | self.filename = filename | |||
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195 | self.fp = open(self.filename, 'rb') | |||
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196 | self.header_file = numpy.fromfile(self.fp, FILE_HEADER_STRUCTURE, 1) | |||
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197 | self.nrecords = self.header_file['nrec'][0] | |||
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198 | self.sizeOfFile = os.path.getsize(self.filename) | |||
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199 | self.counter_records = 0 | |||
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200 | self.flagIsNewFile = 0 | |||
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201 | self.fileIndex += 1 | |||
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202 | ||||
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203 | return 1 | |||
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204 | ||||
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205 | def readNextBlock(self): | |||
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206 | ||||
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207 | while True: | |||
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208 | if self.counter_records == self.nrecords: | |||
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209 | self.flagIsNewFile = 1 | |||
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210 | if not self.setNextFile(): | |||
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211 | return 0 | |||
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212 | ||||
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213 | self.readBlock() | |||
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214 | ||||
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215 | if (self.datatime.time() < self.startTime) or (self.datatime.time() > self.endTime): | |||
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216 | print "[Reading] Record No. %d/%d -> %s [Skipping]" %( | |||
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217 | self.counter_records, | |||
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218 | self.nrecords, | |||
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219 | self.datatime.ctime()) | |||
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220 | continue | |||
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221 | break | |||
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222 | ||||
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223 | print "[Reading] Record No. %d/%d -> %s" %( | |||
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224 | self.counter_records, | |||
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225 | self.nrecords, | |||
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226 | self.datatime.ctime()) | |||
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227 | ||||
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228 | return 1 | |||
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229 | ||||
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230 | def readBlock(self): | |||
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231 | ||||
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232 | pointer = self.fp.tell() | |||
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233 | header_rec = numpy.fromfile(self.fp, REC_HEADER_STRUCTURE, 1) | |||
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234 | self.nchannels = header_rec['nchan'][0]/2 | |||
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235 | self.kchan = header_rec['nrxs'][0] | |||
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236 | self.nmodes = header_rec['nmodes'][0] | |||
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237 | self.nranges = header_rec['nranges'][0] | |||
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238 | self.fp.seek(pointer) | |||
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239 | self.height = numpy.empty((self.nmodes, self.nranges)) | |||
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240 | self.snr = numpy.empty((self.nmodes, self.nchannels, self.nranges)) | |||
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241 | self.buffer = numpy.empty((self.nmodes, 3, self.nranges)) | |||
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242 | ||||
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243 | for mode in range(self.nmodes): | |||
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244 | self.readHeader() | |||
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245 | data = self.readData() | |||
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246 | self.height[mode] = (data[0] - self.correction) / 1000. | |||
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247 | self.buffer[mode] = data[1] | |||
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248 | self.snr[mode] = data[2] | |||
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249 | ||||
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250 | self.counter_records = self.counter_records + self.nmodes | |||
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251 | ||||
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252 | return | |||
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253 | ||||
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254 | def readHeader(self): | |||
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255 | ''' | |||
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256 | RecordHeader of BLTR rawdata file | |||
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257 | ''' | |||
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258 | ||||
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259 | header_structure = numpy.dtype( | |||
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260 | REC_HEADER_STRUCTURE.descr + [ | |||
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261 | ('antenna_coord', 'f4', (2, self.nchannels)), | |||
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262 | ('rx_gains', 'u4', (self.nchannels,)), | |||
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263 | ('rx_analysis', 'u4', (self.nchannels,)) | |||
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264 | ] | |||
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265 | ) | |||
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266 | ||||
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267 | self.header_rec = numpy.fromfile(self.fp, header_structure, 1) | |||
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268 | self.lat = self.header_rec['lat'][0] | |||
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269 | self.lon = self.header_rec['lon'][0] | |||
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270 | self.delta = self.header_rec['delta_r'][0] | |||
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271 | self.correction = self.header_rec['dmode_rngcorr'][0] | |||
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272 | self.imode = self.header_rec['dmode_index'][0] | |||
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273 | self.antenna = self.header_rec['antenna_coord'] | |||
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274 | self.rx_gains = self.header_rec['rx_gains'] | |||
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275 | self.time1 = self.header_rec['time'][0] | |||
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276 | tseconds = self.header_rec['time'][0] | |||
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277 | local_t1 = time.localtime(tseconds) | |||
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278 | self.year = local_t1.tm_year | |||
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279 | self.month = local_t1.tm_mon | |||
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280 | self.day = local_t1.tm_mday | |||
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281 | self.t = datetime.datetime(self.year, self.month, self.day) | |||
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282 | self.datatime = datetime.datetime.utcfromtimestamp(self.time1) | |||
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283 | ||||
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284 | def readData(self): | |||
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285 | ''' | |||
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286 | Reading and filtering data block record of BLTR rawdata file, filtering is according to status_value. | |||
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287 | ||||
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288 | Input: | |||
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289 | status_value - Array data is set to NAN for values that are not equal to status_value | |||
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290 | ||||
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291 | ''' | |||
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292 | ||||
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293 | data_structure = numpy.dtype( | |||
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294 | DATA_STRUCTURE.descr + [ | |||
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295 | ('rx_saturation', 'u4', (self.nchannels,)), | |||
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296 | ('chan_offset', 'u4', (2 * self.nchannels,)), | |||
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297 | ('rx_amp', 'u4', (self.nchannels,)), | |||
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298 | ('rx_snr', 'f4', (self.nchannels,)), | |||
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299 | ('cross_snr', 'f4', (self.kchan,)), | |||
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300 | ('sea_power_relative', 'f4', (self.kchan,))] | |||
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301 | ) | |||
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302 | ||||
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303 | data = numpy.fromfile(self.fp, data_structure, self.nranges) | |||
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304 | ||||
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305 | height = data['range'] | |||
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306 | winds = numpy.array((data['zonal'], data['meridional'], data['vertical'])) | |||
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307 | snr = data['rx_snr'].T | |||
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308 | ||||
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309 | winds[numpy.where(winds == -9999.)] = numpy.nan | |||
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310 | winds[:, numpy.where(data['status'] != self.status_value)] = numpy.nan | |||
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311 | snr[numpy.where(snr == -9999.)] = numpy.nan | |||
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312 | snr[:, numpy.where(data['status'] != self.status_value)] = numpy.nan | |||
|
313 | snr = numpy.power(10, snr / 10) | |||
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314 | ||||
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315 | return height, winds, snr | |||
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316 | ||||
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317 | def set_output(self): | |||
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318 | ''' | |||
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319 | Storing data from databuffer to dataOut object | |||
|
320 | ''' | |||
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321 | ||||
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322 | self.dataOut.time1 = self.time1 | |||
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323 | self.dataOut.data_SNR = self.snr | |||
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324 | self.dataOut.height= self.height | |||
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325 | self.dataOut.data_output = self.buffer | |||
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326 | self.dataOut.utctimeInit = self.time1 | |||
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327 | self.dataOut.utctime = self.dataOut.utctimeInit | |||
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328 | self.dataOut.counter_records = self.counter_records | |||
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329 | self.dataOut.nrecords = self.nrecords | |||
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330 | self.dataOut.useLocalTime = False | |||
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331 | self.dataOut.paramInterval = 157 | |||
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332 | self.dataOut.timezone = self.timezone | |||
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333 | self.dataOut.site = self.siteFile | |||
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334 | self.dataOut.nrecords = self.nrecords | |||
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335 | self.dataOut.sizeOfFile = self.sizeOfFile | |||
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336 | self.dataOut.lat = self.lat | |||
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337 | self.dataOut.lon = self.lon | |||
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338 | self.dataOut.channelList = range(self.nchannels) | |||
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339 | self.dataOut.kchan = self.kchan | |||
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340 | # self.dataOut.nHeights = self.nranges | |||
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341 | self.dataOut.delta = self.delta | |||
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342 | self.dataOut.correction = self.correction | |||
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343 | self.dataOut.nmodes = self.nmodes | |||
|
344 | self.dataOut.imode = self.imode | |||
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345 | self.dataOut.antenna = self.antenna | |||
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346 | self.dataOut.rx_gains = self.rx_gains | |||
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347 | self.dataOut.flagNoData = False | |||
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348 | ||||
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349 | def getData(self): | |||
|
350 | ''' | |||
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351 | Storing data from databuffer to dataOut object | |||
|
352 | ''' | |||
|
353 | if self.flagNoMoreFiles: | |||
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354 | self.dataOut.flagNoData = True | |||
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355 | print 'No file left to process' | |||
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356 | return 0 | |||
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357 | ||||
|
358 | if not(self.readNextBlock()): | |||
|
359 | self.dataOut.flagNoData = True | |||
|
360 | return 0 | |||
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361 | ||||
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362 | self.set_output() | |||
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363 | ||||
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364 | return 1 |
@@ -0,0 +1,375 | |||||
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1 | ''' | |||
|
2 | Created on Aug 1, 2017 | |||
|
3 | ||||
|
4 | @author: Juan C. Espinoza | |||
|
5 | ''' | |||
|
6 | ||||
|
7 | import os | |||
|
8 | import sys | |||
|
9 | import time | |||
|
10 | import datetime | |||
|
11 | ||||
|
12 | import numpy | |||
|
13 | ||||
|
14 | from schainpy.model.proc.jroproc_base import ProcessingUnit, Operation | |||
|
15 | from schainpy.model.data.jrodata import Parameters | |||
|
16 | from schainpy.model.data.jroheaderIO import RadarControllerHeader, SystemHeader | |||
|
17 | from schainpy.model.graphics.jroplot_parameters import WindProfilerPlot | |||
|
18 | from schainpy.model.io.jroIO_base import * | |||
|
19 | ||||
|
20 | try: | |||
|
21 | import madrigal | |||
|
22 | import madrigal.cedar | |||
|
23 | from madrigal.cedar import MadrigalCatalogRecord | |||
|
24 | except: | |||
|
25 | print 'You should install "madrigal library" module if you want to read/write Madrigal data' | |||
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26 | ||||
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27 | ||||
|
28 | class MADWriter(Operation): | |||
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29 | ||||
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30 | def __init__(self): | |||
|
31 | ||||
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32 | Operation.__init__(self) | |||
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33 | self.dataOut = Parameters() | |||
|
34 | self.path = None | |||
|
35 | self.dataOut = None | |||
|
36 | self.flagIsNewFile=1 | |||
|
37 | self.ext = ".hdf5" | |||
|
38 | ||||
|
39 | return | |||
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40 | ||||
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41 | def run(self, dataOut, path , modetowrite,**kwargs): | |||
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42 | ||||
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43 | if self.flagIsNewFile: | |||
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44 | flagdata = self.setup(dataOut, path, modetowrite) | |||
|
45 | ||||
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46 | self.putData() | |||
|
47 | return | |||
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48 | ||||
|
49 | def setup(self, dataOut, path, modetowrite): | |||
|
50 | ''' | |||
|
51 | Recovering data to write in new *.hdf5 file | |||
|
52 | Inputs: | |||
|
53 | modew -- mode to write (1 or 2) | |||
|
54 | path -- destination path | |||
|
55 | ||||
|
56 | ''' | |||
|
57 | ||||
|
58 | self.im = modetowrite-1 | |||
|
59 | if self.im!=0 and self.im!=1: | |||
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60 | raise ValueError, 'Check "modetowrite" value. Must be egual to 1 or 2, "{}" is not valid. '.format(modetowrite) | |||
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61 | ||||
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62 | self.dataOut = dataOut | |||
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63 | self.nmodes = self.dataOut.nmodes | |||
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64 | self.nchannels = self.dataOut.nchannels | |||
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65 | self.lat = self.dataOut.lat | |||
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66 | self.lon = self.dataOut.lon | |||
|
67 | self.hcm = 3 | |||
|
68 | self.thisDate = self.dataOut.utctimeInit | |||
|
69 | self.year = self.dataOut.year | |||
|
70 | self.month = self.dataOut.month | |||
|
71 | self.day = self.dataOut.day | |||
|
72 | self.path = path | |||
|
73 | ||||
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74 | self.flagIsNewFile = 0 | |||
|
75 | ||||
|
76 | return 1 | |||
|
77 | ||||
|
78 | def setFile(self): | |||
|
79 | ''' | |||
|
80 | - Determining the file name for each mode of operation | |||
|
81 | kinst - Kind of Instrument (mnemotic) | |||
|
82 | kindat - Kind of Data (mnemotic) | |||
|
83 | ||||
|
84 | - Creating a cedarObject | |||
|
85 | ||||
|
86 | ''' | |||
|
87 | lat_piura = -5.17 | |||
|
88 | lat_huancayo = -12.04 | |||
|
89 | lat_porcuya = -5.8 | |||
|
90 | ||||
|
91 | if '%2.2f' % self.lat == '%2.2f' % lat_piura: | |||
|
92 | self.instMnemonic = 'pbr' | |||
|
93 | ||||
|
94 | elif '%2.2f' % self.lat == '%2.2f' % lat_huancayo: | |||
|
95 | self.instMnemonic = 'hbr' | |||
|
96 | ||||
|
97 | elif '%2.2f' % self.lat == '%2.2f' % lat_porcuya: | |||
|
98 | self.instMnemonic = 'obr' | |||
|
99 | else: raise Warning, "The site of file read doesn't match any site known. Only file from Huancayo, Piura and Porcuya can be processed.\n Check the file " | |||
|
100 | ||||
|
101 | mode = ['_mode1','_mode2'] | |||
|
102 | ||||
|
103 | self.hdf5filename = '%s%4.4d%2.2d%2.2d%s%s' % (self.instMnemonic, | |||
|
104 | self.year, | |||
|
105 | self.month, | |||
|
106 | self.day, | |||
|
107 | mode[self.im], | |||
|
108 | self.ext) | |||
|
109 | ||||
|
110 | self.fullname=os.path.join(self.path,self.hdf5filename) | |||
|
111 | ||||
|
112 | if os.path.isfile(self.fullname) : | |||
|
113 | print "Destination path '%s' already exists. Previous file deleted. " %self.fullname | |||
|
114 | os.remove(self.fullname) | |||
|
115 | ||||
|
116 | # Identify kinst and kindat | |||
|
117 | InstName = self.hdf5filename[0:3] | |||
|
118 | KinstList = [1000, 1001, 1002] | |||
|
119 | KinstId = {'pbr':0, 'hbr':1, 'obr':2} # pbr:piura, hbr:huancayo, obr:porcuya | |||
|
120 | KindatList = [1600, 1601] # mode 1, mode 2 | |||
|
121 | self.type = KinstId[InstName] | |||
|
122 | self.kinst = KinstList[self.type] | |||
|
123 | self.kindat = KindatList[self.im] | |||
|
124 | ||||
|
125 | try: | |||
|
126 | self.cedarObj = madrigal.cedar.MadrigalCedarFile(self.fullname, True) | |||
|
127 | except ValueError, message: | |||
|
128 | print '[Error]: Impossible to create a cedar object with "madrigal.cedar.MadrigalCedarFile" ' | |||
|
129 | return | |||
|
130 | ||||
|
131 | return 1 | |||
|
132 | ||||
|
133 | def writeBlock(self): | |||
|
134 | ''' | |||
|
135 | - Selecting mode of operation: | |||
|
136 | ||||
|
137 | bltr high resolution mode 1 - Low Atmosphere (0 - 3km) // bltr high resolution mode 2 - High Atmosphere (0 - 10km) | |||
|
138 | msnr - Average Signal Noise Ratio in dB | |||
|
139 | hcm - 3 km | |||
|
140 | ||||
|
141 | - Filling the cedarObject by a block: each array data entry is assigned a code that defines the parameter to write to the file | |||
|
142 | ||||
|
143 | GDLATR - Reference geod latitude (deg) | |||
|
144 | GDLONR - Reference geographic longitude (deg) | |||
|
145 | GDLAT2 - Geodetic latitude of second inst (deg) | |||
|
146 | GLON2 - Geographic longitude of second inst (deg) | |||
|
147 | ||||
|
148 | GDALT - Geodetic altitude (height) (km) | |||
|
149 | SNL - Log10 (signal to noise ratio) | |||
|
150 | VN1P2 - Neutral wind in direction 1 (eastward) (m/s), ie zonal wind | |||
|
151 | VN2P2 - Neutral wind in direction 2 (northward) (m/s), ie meridional wind | |||
|
152 | EL2 - Ending elevation angle (deg), ie vertical wind | |||
|
153 | ||||
|
154 | Other parameters: /madrigal3/metadata/parcodes.tab | |||
|
155 | ||||
|
156 | ''' | |||
|
157 | ||||
|
158 | self.z_zon = self.dataOut.data_output[0,:,:] | |||
|
159 | self.z_mer =self.dataOut.data_output[1,:,:] | |||
|
160 | self.z_ver = self.dataOut.data_output[2,:,:] | |||
|
161 | ||||
|
162 | if self.im == 0: | |||
|
163 | h_select = numpy.where(numpy.bitwise_and(self.dataOut.height[0, :] >= 0., self.dataOut.height[0, :] <= self.hcm, numpy.isfinite(self.dataOut.height[0, :]))) | |||
|
164 | else: | |||
|
165 | h_select = numpy.where(numpy.bitwise_and(self.dataOut.height[0, :] >= 0., self.dataOut.height[0, :] < 20, numpy.isfinite(self.dataOut.height[0, :]))) | |||
|
166 | ||||
|
167 | ht = h_select[0] | |||
|
168 | ||||
|
169 | self.o_height = self.dataOut.height[self.im, ht] | |||
|
170 | self.o_zon = self.z_zon[ht, self.im] | |||
|
171 | self.o_mer = self.z_mer[ht, self.im] | |||
|
172 | self.o_ver = self.z_ver[ht, self.im] | |||
|
173 | o_snr = self.dataOut.data_SNR[ :, :, self.im] | |||
|
174 | ||||
|
175 | o_snr = o_snr[ht, :] | |||
|
176 | ||||
|
177 | ndiv = numpy.nansum((numpy.isfinite(o_snr)), 1) | |||
|
178 | ndiv = ndiv.astype(float) | |||
|
179 | ||||
|
180 | sel_div = numpy.where(ndiv == 0.) | |||
|
181 | ndiv[sel_div] = numpy.nan | |||
|
182 | ||||
|
183 | if self.nchannels > 1: | |||
|
184 | msnr = numpy.nansum(o_snr, axis=1) | |||
|
185 | else: | |||
|
186 | msnr = o_snr | |||
|
187 | ||||
|
188 | try: | |||
|
189 | self.msnr = 10 * numpy.log10(msnr / ndiv) | |||
|
190 | except ZeroDivisionError: | |||
|
191 | self.msnr = 10 * numpy.log10(msnr /1) | |||
|
192 | print 'Number of division (ndiv) egal to 1 by default. Check SNR' | |||
|
193 | ||||
|
194 | time_t = time.gmtime(self.dataOut.time1) | |||
|
195 | year = time_t.tm_year | |||
|
196 | month = time_t.tm_mon | |||
|
197 | day = time_t.tm_mday | |||
|
198 | hour = time_t.tm_hour | |||
|
199 | minute = time_t.tm_min | |||
|
200 | second = time_t.tm_sec | |||
|
201 | timedate_0 = datetime.datetime(year, month, day, hour, minute, second) | |||
|
202 | ||||
|
203 | # 1d parameters | |||
|
204 | GDLATR = self.lat | |||
|
205 | GDLONR = self.lon | |||
|
206 | GDLAT2 = self.lat | |||
|
207 | GLON2 = self.lon | |||
|
208 | ||||
|
209 | # 2d parameters | |||
|
210 | GDALT = self.o_height | |||
|
211 | ||||
|
212 | SNL = self.msnr | |||
|
213 | VN1P2 = self.o_zon | |||
|
214 | VN2P2 = self.o_mer | |||
|
215 | EL2 = self.o_ver | |||
|
216 | NROW = len(self.o_height) | |||
|
217 | ||||
|
218 | startTime = timedate_0 | |||
|
219 | endTime = startTime | |||
|
220 | self.dataRec = madrigal.cedar.MadrigalDataRecord(self.kinst, | |||
|
221 | self.kindat, | |||
|
222 | startTime.year, | |||
|
223 | startTime.month, | |||
|
224 | startTime.day, | |||
|
225 | startTime.hour, | |||
|
226 | startTime.minute, | |||
|
227 | startTime.second, | |||
|
228 | 0, | |||
|
229 | endTime.year, | |||
|
230 | endTime.month, | |||
|
231 | endTime.day, | |||
|
232 | endTime.hour, | |||
|
233 | endTime.minute, | |||
|
234 | endTime.second, | |||
|
235 | 0, | |||
|
236 | ('gdlatr', 'gdlonr', 'gdlat2', 'glon2'), | |||
|
237 | ('gdalt', 'snl', 'vn1p2', 'vn2p2', 'el2'), | |||
|
238 | NROW, ind2DList=['gdalt']) | |||
|
239 | ||||
|
240 | # Setting 1d values | |||
|
241 | self.dataRec.set1D('gdlatr', GDLATR) | |||
|
242 | self.dataRec.set1D('gdlonr', GDLONR) | |||
|
243 | self.dataRec.set1D('gdlat2', GDLAT2) | |||
|
244 | self.dataRec.set1D('glon2', GLON2) | |||
|
245 | ||||
|
246 | # Setting 2d values | |||
|
247 | for n in range(self.o_height.shape[0]): | |||
|
248 | self.dataRec.set2D('gdalt', n, GDALT[n]) | |||
|
249 | self.dataRec.set2D('snl', n, SNL[n]) | |||
|
250 | self.dataRec.set2D('vn1p2', n, VN1P2[n]) | |||
|
251 | self.dataRec.set2D('vn2p2', n, VN2P2[n]) | |||
|
252 | self.dataRec.set2D('el2', n, EL2[n]) | |||
|
253 | ||||
|
254 | # Appending new data record | |||
|
255 | ''' | |||
|
256 | [MADRIGAL3]There are two ways to write to a MadrigalCedarFile. Either this method (write) is called after all the | |||
|
257 | records have been appended to the MadrigalCedarFile, or dump is called after a certain number of records are appended, | |||
|
258 | and then at the end dump is called a final time if there were any records not yet dumped, followed by addArray. | |||
|
259 | ''' | |||
|
260 | ||||
|
261 | self.cedarObj.append(self.dataRec) | |||
|
262 | print ' [Writing] records {} (mode {}).'.format(self.dataOut.counter_records,self.im+1) | |||
|
263 | self.cedarObj.dump() | |||
|
264 | ||||
|
265 | ||||
|
266 | ||||
|
267 | ||||
|
268 | def setHeader(self): | |||
|
269 | ''' | |||
|
270 | - Creating self.catHeadObj | |||
|
271 | - Adding information catalog | |||
|
272 | - Writing file header | |||
|
273 | ||||
|
274 | ''' | |||
|
275 | self.catHeadObj = madrigal.cedar.CatalogHeaderCreator(self.fullname) | |||
|
276 | kindatDesc, comments, analyst, history, principleInvestigator = self._info_BLTR() | |||
|
277 | ||||
|
278 | self.catHeadObj.createCatalog(principleInvestigator="Jarjar", | |||
|
279 | expPurpose='characterize the atmospheric dynamics in this region where frequently it happens the El Nino', | |||
|
280 | sciRemarks="http://madrigal3.haystack.mit.edu/static/CEDARMadrigalHdf5Format.pdf") | |||
|
281 | ||||
|
282 | self.catHeadObj.createHeader(kindatDesc, analyst, comments, history) | |||
|
283 | ||||
|
284 | self.catHeadObj.write() | |||
|
285 | ||||
|
286 | print '[File created] path: %s' % (self.fullname) | |||
|
287 | ||||
|
288 | def putData(self): | |||
|
289 | ||||
|
290 | if self.dataOut.flagNoData: | |||
|
291 | return 0 | |||
|
292 | ||||
|
293 | if self.dataOut.counter_records == 1: | |||
|
294 | self.setFile() | |||
|
295 | print '[Writing] Setting new hdf5 file for the mode {}'.format(self.im+1) | |||
|
296 | ||||
|
297 | if self.dataOut.counter_records <= self.dataOut.nrecords: | |||
|
298 | self.writeBlock() | |||
|
299 | ||||
|
300 | ||||
|
301 | if self.dataOut.counter_records == self.dataOut.nrecords: | |||
|
302 | self.cedarObj.addArray() | |||
|
303 | ||||
|
304 | self.setHeader() | |||
|
305 | self.flagIsNewFile = 1 | |||
|
306 | ||||
|
307 | def _info_BLTR(self): | |||
|
308 | ||||
|
309 | kindatDesc = '''--This header is for KINDAT = %d''' % self.kindat | |||
|
310 | history = None | |||
|
311 | analyst = '''Jarjar''' | |||
|
312 | principleInvestigator = ''' | |||
|
313 | Jarjar | |||
|
314 | Radio Observatorio de Jicamarca | |||
|
315 | Instituto Geofisico del Peru | |||
|
316 | ||||
|
317 | ''' | |||
|
318 | if self.type == 1: | |||
|
319 | comments = ''' | |||
|
320 | ||||
|
321 | --These data are provided by two Boundary Layer and Tropospheric Radar (BLTR) deployed at two different locations at Peru(GMT-5), one of them at Piura(5.17 S, 80.64W) and another located at Huancayo (12.04 S, 75.32 W). | |||
|
322 | ||||
|
323 | --The purpose of conducting these observations is to measure wind in the differents levels of height, this radar makes measurements the Zonal(U), Meridional(V) and Vertical(W) wind velocities component in northcoast from Peru. And the main purpose of these mensurations is to characterize the atmospheric dynamics in this region where frequently it happens the 'El Nino Phenomenon' | |||
|
324 | ||||
|
325 | --In Kindat = 1600, contains information of wind velocities component since 0 Km to 3 Km. | |||
|
326 | ||||
|
327 | --In Kindat = 1601, contains information of wind velocities component since 0 Km to 10 Km. | |||
|
328 | ||||
|
329 | --The Huancayo-BLTR is a VHF Profiler Radar System is a 3 channel coherent receiver pulsed radar utilising state-of-the-art software and computing techniques to acquire, decode, and translate signals obtained from partial reflection echoes in the troposphere, lower stratosphere and mesosphere. It uses an array of three horizontal spaced and vertically directed receiving antennas. The data is recorded thirty seconds, averaged to one minute mean values of Height, Zonal, Meridional and Vertical wind. | |||
|
330 | ||||
|
331 | --The Huancayo-BLTR was installed in January 2010. This instrument was designed and constructed by Genesis Soft Pty. Ltd. Is constituted by three groups of spaced antennas (distributed) forming an isosceles triangle. | |||
|
332 | ||||
|
333 | ||||
|
334 | Station _______ Geographic Coord ______ Geomagnetic Coord | |||
|
335 | ||||
|
336 | _______________ Latitude _ Longitude __ Latitude _ Longitude | |||
|
337 | ||||
|
338 | Huancayo (HUA) __12.04 S ___ 75.32 W _____ -12.05 ____ 352.85 | |||
|
339 | Piura (PIU) _____ 5.17 S ___ 80.64 W ______ 5.18 ____ 350.93 | |||
|
340 | ||||
|
341 | WIND OBSERVATIONS | |||
|
342 | ||||
|
343 | --To obtain wind the BLTR uses Spaced Antenna technique (e.g., Briggs 1984). The scatter and reflection it still provided by variations in the refractive index as in the Doppler method(Gage and Basley,1978; Balsley and Gage 1982; Larsen and Rottger 1982), but instead of using the Doppler shift to derive the velocity components, the cross-correlation between signals in an array of three horizontally spaced and vertically directed receiving antennas is used. | |||
|
344 | ||||
|
345 | ...................................................................... | |||
|
346 | For more information, consult the following references: | |||
|
347 | - Balsley, B. B., and K. S. Gage., On the use of radars for operational wind profiling, Bull. Amer. Meteor.Soc.,63, 1009-1018, 1982. | |||
|
348 | ||||
|
349 | - Briggs, B. H., The analysis of spaced sensor data by correations techniques, Handbook for MAP, Vol. 13, SCOTEP Secretariat, University of Illinois, Urbana, 166-186, 1984. | |||
|
350 | ||||
|
351 | - Gage, K. S., and B.B. Balsley., Doppler radar probing of the clear atmosphere, Bull. Amer. Meteor.Soc., 59, 1074-1093, 1978. | |||
|
352 | ||||
|
353 | - Larsen, M. F., The Spaced Antenna Technique for Radar Wind Profiling, Journal of Atm. and Ocean. Technology. , Vol.6, 920-937, 1989. | |||
|
354 | ||||
|
355 | - Larsen, M. F., A method for single radar voracity measurements?, Handbook for MAP,SCOSTEP Secretariat, University of the Illinois, Urban, in press, 1989. | |||
|
356 | ...................................................................... | |||
|
357 | ||||
|
358 | ACKNOWLEDGEMENTS: | |||
|
359 | ||||
|
360 | --The Piura and Huancayo BLTR are part of the network of instruments operated by the Jicamarca Radio Observatory. | |||
|
361 | ||||
|
362 | --The Jicamarca Radio Observatory is a facility of the Instituto Geofisico del Peru operated with support from the NSF Cooperative Agreement ATM-0432565 through Cornell University | |||
|
363 | ||||
|
364 | ...................................................................... | |||
|
365 | ||||
|
366 | Further questions and comments should be addressed to: | |||
|
367 | Radio Observatorio de Jicamarca | |||
|
368 | Instituto Geofisico del Peru | |||
|
369 | Lima, Peru | |||
|
370 | Web URL: http://jro.igp.gob.pe | |||
|
371 | ...................................................................... | |||
|
372 | ''' | |||
|
373 | ||||
|
374 | return kindatDesc, comments, analyst, history, principleInvestigator | |||
|
375 |
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@@ -13,7 +13,7 from jroIO_kamisr import * | |||||
13 | from jroIO_param import * |
|
13 | from jroIO_param import * | |
14 | from jroIO_hf import * |
|
14 | from jroIO_hf import * | |
15 |
|
15 | |||
|
16 | from bltrIO_param import * | |||
16 | from jroIO_bltr import * |
|
17 | from jroIO_bltr import * | |
17 | from jroIO_mira35c import * |
|
18 | from jroIO_mira35c import * | |
18 | from io_bltr_block import * |
|
|||
19 |
|
19 |
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|
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|
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@@ -11,7 +11,6 import numpy | |||||
11 | import fnmatch |
|
11 | import fnmatch | |
12 | import inspect |
|
12 | import inspect | |
13 | import time, datetime |
|
13 | import time, datetime | |
14 | #import h5py |
|
|||
15 | import traceback |
|
14 | import traceback | |
16 |
|
15 | |||
17 | try: |
|
16 | try: | |
@@ -1058,10 +1057,10 class JRODataReader(JRODataIO): | |||||
1058 |
|
1057 | |||
1059 | break |
|
1058 | break | |
1060 |
|
1059 | |||
1061 |
|
|
1060 | if self.verbose: | |
1062 |
|
|
1061 | print "[Reading] Block No. %d/%d -> %s" %(self.nReadBlocks, | |
1063 |
|
|
1062 | self.processingHeaderObj.dataBlocksPerFile, | |
1064 |
|
|
1063 | self.dataOut.datatime.ctime()) | |
1065 | return 1 |
|
1064 | return 1 | |
1066 |
|
1065 | |||
1067 | def __readFirstHeader(self): |
|
1066 | def __readFirstHeader(self): |
1 | NO CONTENT: modified file, binary diff hidden |
|
NO CONTENT: modified file, binary diff hidden |
@@ -10,10 +10,9 import matplotlib.pyplot as plt | |||||
10 |
|
10 | |||
11 | import pylab as plb |
|
11 | import pylab as plb | |
12 | from scipy.optimize import curve_fit |
|
12 | from scipy.optimize import curve_fit | |
13 | from scipy import asarray as ar,exp |
|
13 | from scipy import asarray as ar, exp | |
14 | from scipy import stats |
|
14 | from scipy import stats | |
15 |
|
15 | |||
16 | from duplicity.path import Path |
|
|||
17 | from numpy.ma.core import getdata |
|
16 | from numpy.ma.core import getdata | |
18 |
|
17 | |||
19 | SPEED_OF_LIGHT = 299792458 |
|
18 | SPEED_OF_LIGHT = 299792458 | |
@@ -427,7 +426,7 class RecordHeaderBLTR(Header): | |||||
427 | return 1 |
|
426 | return 1 | |
428 |
|
427 | |||
429 |
|
428 | |||
430 | class BLTRReader (ProcessingUnit, FileHeaderBLTR, RecordHeaderBLTR, JRODataReader): |
|
429 | class BLTRSpectraReader (ProcessingUnit, FileHeaderBLTR, RecordHeaderBLTR, JRODataReader): | |
431 |
|
430 | |||
432 | path = None |
|
431 | path = None | |
433 | startDate = None |
|
432 | startDate = None | |
@@ -456,7 +455,7 class BLTRReader (ProcessingUnit, FileHeaderBLTR, RecordHeaderBLTR, JRODataReade | |||||
456 | #Eliminar de la base la herencia |
|
455 | #Eliminar de la base la herencia | |
457 | ProcessingUnit.__init__(self, **kwargs) |
|
456 | ProcessingUnit.__init__(self, **kwargs) | |
458 |
|
457 | |||
459 |
|
|
458 | #self.isConfig = False | |
460 |
|
459 | |||
461 | #self.pts2read_SelfSpectra = 0 |
|
460 | #self.pts2read_SelfSpectra = 0 | |
462 | #self.pts2read_CrossSpectra = 0 |
|
461 | #self.pts2read_CrossSpectra = 0 | |
@@ -1151,43 +1150,5 class BLTRReader (ProcessingUnit, FileHeaderBLTR, RecordHeaderBLTR, JRODataReade | |||||
1151 |
|
1150 | |||
1152 |
|
1151 | |||
1153 |
|
1152 | |||
1154 | class BLTRWriter(ProcessingUnit): |
|
1153 | ||
1155 | ''' |
|
|||
1156 | classdocs |
|
|||
1157 | ''' |
|
|||
1158 |
|
||||
1159 | def __init__(self): |
|
|||
1160 | ''' |
|
|||
1161 | Constructor |
|
|||
1162 | ''' |
|
|||
1163 | self.dataOut = None |
|
|||
1164 |
|
||||
1165 | self.isConfig = False |
|
|||
1166 |
|
||||
1167 | def setup(self, dataIn, path, blocksPerFile, set=0, ext=None): |
|
|||
1168 | ''' |
|
|||
1169 | In this method we should set all initial parameters. |
|
|||
1170 |
|
||||
1171 | Input: |
|
|||
1172 | dataIn : Input data will also be outputa data |
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1173 |
|
||||
1174 | ''' |
|
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1175 | self.dataOut = dataIn |
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1176 |
|
||||
1177 | self.isConfig = True |
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1178 |
|
||||
1179 | return |
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1180 |
|
||||
1181 | def run(self, dataIn, **kwargs): |
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|||
1182 | ''' |
|
|||
1183 | This method will be called many times so here you should put all your code |
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|||
1184 |
|
||||
1185 | Inputs: |
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1186 |
|
||||
1187 | dataIn : object with the data |
|
|||
1188 |
|
||||
1189 | ''' |
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1190 |
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1191 | if not self.isConfig: |
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1192 | self.setup(dataIn, **kwargs) |
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1193 |
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1154 |
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@@ -13,7 +13,6 from scipy.optimize import curve_fit | |||||
13 | from scipy import asarray as ar,exp |
|
13 | from scipy import asarray as ar,exp | |
14 | from scipy import stats |
|
14 | from scipy import stats | |
15 |
|
15 | |||
16 | from duplicity.path import Path |
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17 | from numpy.ma.core import getdata |
|
16 | from numpy.ma.core import getdata | |
18 |
|
17 | |||
19 | SPEED_OF_LIGHT = 299792458 |
|
18 | SPEED_OF_LIGHT = 299792458 |
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@@ -19,56 +19,44 import matplotlib.pyplot as plt | |||||
19 | from matplotlib.mlab import griddata |
|
19 | from matplotlib.mlab import griddata | |
20 |
|
20 | |||
21 |
|
21 | |||
22 |
|
22 | class BLTRParametersProc(ProcessingUnit): | ||
23 |
|
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24 | class BLTRProcess(ProcessingUnit): |
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25 | isConfig = False |
|
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26 | ''' |
|
23 | ''' | |
27 |
Processing unit for BLTR |
|
24 | Processing unit for BLTR parameters data (winds) | |
28 |
|
25 | |||
29 | Inputs: |
|
26 | Inputs: | |
30 | self.dataOut.nmodes - Number of operation modes |
|
27 | self.dataOut.nmodes - Number of operation modes | |
31 | self.dataOut.nchannels - Number of channels |
|
28 | self.dataOut.nchannels - Number of channels | |
32 | self.dataOut.nranges - Number of ranges |
|
29 | self.dataOut.nranges - Number of ranges | |
33 |
|
30 | |||
34 | self.dataOut.data_SNR - SNR array |
|
31 | self.dataOut.data_SNR - SNR array | |
35 | self.dataOut.data_output - Zonal, Vertical and Meridional velocity array |
|
32 | self.dataOut.data_output - Zonal, Vertical and Meridional velocity array | |
36 | self.dataOut.height - Height array (km) |
|
33 | self.dataOut.height - Height array (km) | |
37 | self.dataOut.time - Time array (seconds) |
|
34 | self.dataOut.time - Time array (seconds) | |
38 |
|
35 | |||
39 | self.dataOut.fileIndex -Index of the file currently read |
|
36 | self.dataOut.fileIndex -Index of the file currently read | |
40 | self.dataOut.lat - Latitude coordinate of BLTR location |
|
37 | self.dataOut.lat - Latitude coordinate of BLTR location | |
41 |
|
38 | |||
42 | self.dataOut.doy - Experiment doy (number of the day in the current year) |
|
39 | self.dataOut.doy - Experiment doy (number of the day in the current year) | |
43 | self.dataOut.month - Experiment month |
|
40 | self.dataOut.month - Experiment month | |
44 | self.dataOut.day - Experiment day |
|
41 | self.dataOut.day - Experiment day | |
45 | self.dataOut.year - Experiment year |
|
42 | self.dataOut.year - Experiment year | |
46 | ''' |
|
43 | ''' | |
47 |
|
44 | |||
48 |
def __init__(self, **kwargs): |
|
45 | def __init__(self, **kwargs): | |
49 | ''' |
|
46 | ''' | |
50 | Inputs: None |
|
47 | Inputs: None | |
51 |
|
||||
52 | ''' |
|
48 | ''' | |
53 | ProcessingUnit.__init__(self, **kwargs) |
|
49 | ProcessingUnit.__init__(self, **kwargs) | |
54 | self.dataOut = Parameters() |
|
50 | self.dataOut = Parameters() | |
55 |
|
51 | |||
56 | # Filters |
|
52 | def run (self, mode): | |
57 | snr_val = None |
|
53 | ''' | |
58 | value = None |
|
54 | ''' | |
59 | svalue2 = None |
|
|||
60 | method = None |
|
|||
61 | factor = None |
|
|||
62 | filter = None |
|
|||
63 | npoints = None |
|
|||
64 | status_value = None |
|
|||
65 | width = None |
|
|||
66 | self.flagfirstmode = 0 |
|
|||
67 |
|
||||
68 | def run (self): |
|
|||
69 | if self.dataIn.type == "Parameters": |
|
55 | if self.dataIn.type == "Parameters": | |
70 | self.dataOut.copy(self.dataIn) |
|
56 | self.dataOut.copy(self.dataIn) | |
71 |
|
57 | |||
|
58 | self.dataOut.data_output = self.dataOut.data_output[mode] | |||
|
59 | self.dataOut.heightList = self.dataOut.height[mode] | |||
72 |
|
60 | |||
73 | def TimeSelect(self): |
|
61 | def TimeSelect(self): | |
74 | ''' |
|
62 | ''' |
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