jroheaderIO.py
875 lines
| 29.3 KiB
| text/x-python
|
PythonLexer
Daniel Valdez
|
r487 | ''' | |
| $Author: murco $ | |||
| $Id: JROHeaderIO.py 151 2012-10-31 19:00:51Z murco $ | |||
| ''' | |||
Ivan Valdez
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r798 | import sys | |
|
Daniel Valdez
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r487 | import numpy | |
| import copy | |||
| import datetime | |||
Jose Chavez
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r980 | import inspect | |
|
Daniel Valdez
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r487 | ||
Miguel Valdez
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r616 | SPEED_OF_LIGHT = 299792458 | |
| SPEED_OF_LIGHT = 3e8 | |||
|
Daniel Valdez
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r487 | BASIC_STRUCTURE = numpy.dtype([ | |
| ('nSize','<u4'), | |||
| ('nVersion','<u2'), | |||
| ('nDataBlockId','<u4'), | |||
| ('nUtime','<u4'), | |||
| ('nMilsec','<u2'), | |||
| ('nTimezone','<i2'), | |||
| ('nDstflag','<i2'), | |||
| ('nErrorCount','<u4') | |||
| ]) | |||
| SYSTEM_STRUCTURE = numpy.dtype([ | |||
| ('nSize','<u4'), | |||
| ('nNumSamples','<u4'), | |||
| ('nNumProfiles','<u4'), | |||
| ('nNumChannels','<u4'), | |||
| ('nADCResolution','<u4'), | |||
| ('nPCDIOBusWidth','<u4'), | |||
| ]) | |||
| RADAR_STRUCTURE = numpy.dtype([ | |||
| ('nSize','<u4'), | |||
| ('nExpType','<u4'), | |||
| ('nNTx','<u4'), | |||
| ('fIpp','<f4'), | |||
| ('fTxA','<f4'), | |||
| ('fTxB','<f4'), | |||
| ('nNumWindows','<u4'), | |||
| ('nNumTaus','<u4'), | |||
| ('nCodeType','<u4'), | |||
| ('nLine6Function','<u4'), | |||
| ('nLine5Function','<u4'), | |||
| ('fClock','<f4'), | |||
| ('nPrePulseBefore','<u4'), | |||
| ('nPrePulseAfter','<u4'), | |||
| ('sRangeIPP','<a20'), | |||
| ('sRangeTxA','<a20'), | |||
| ('sRangeTxB','<a20'), | |||
| ]) | |||
| SAMPLING_STRUCTURE = numpy.dtype([('h0','<f4'),('dh','<f4'),('nsa','<u4')]) | |||
| PROCESSING_STRUCTURE = numpy.dtype([ | |||
| ('nSize','<u4'), | |||
| ('nDataType','<u4'), | |||
| ('nSizeOfDataBlock','<u4'), | |||
| ('nProfilesperBlock','<u4'), | |||
| ('nDataBlocksperFile','<u4'), | |||
| ('nNumWindows','<u4'), | |||
| ('nProcessFlags','<u4'), | |||
| ('nCoherentIntegrations','<u4'), | |||
| ('nIncoherentIntegrations','<u4'), | |||
| ('nTotalSpectra','<u4') | |||
| ]) | |||
| class Header(object): | |||
| def __init__(self): | |||
|
Miguel Valdez
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r684 | raise NotImplementedError | |
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Daniel Valdez
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r487 | ||
| def copy(self): | |||
| return copy.deepcopy(self) | |||
| def read(self): | |||
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Miguel Valdez
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r684 | raise NotImplementedError | |
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Daniel Valdez
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r487 | ||
| def write(self): | |||
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Miguel Valdez
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r684 | raise NotImplementedError | |
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Jose Chavez
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r980 | ||
| def getAllowedArgs(self): | |||
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Jose Chavez
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r981 | args = inspect.getargspec(self.__init__).args | |
| try: | |||
| args.remove('self') | |||
| except: | |||
| pass | |||
| return args | |||
| def getAsDict(self): | |||
| args = self.getAllowedArgs() | |||
| asDict = {} | |||
| for x in args: | |||
| asDict[x] = self[x] | |||
| return asDict | |||
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Daniel Valdez
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r487 | ||
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Jose Chavez
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r981 | def __getitem__(self, name): | |
| return getattr(self, name) | |||
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Daniel Valdez
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r487 | def printInfo(self): | |
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Miguel Valdez
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r672 | message = "#"*50 + "\n" | |
| message += self.__class__.__name__.upper() + "\n" | |||
| message += "#"*50 + "\n" | |||
|
Miguel Valdez
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r728 | keyList = self.__dict__.keys() | |
| keyList.sort() | |||
| for key in keyList: | |||
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Miguel Valdez
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r672 | message += "%s = %s" %(key, self.__dict__[key]) + "\n" | |
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Miguel Valdez
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r728 | ||
| if "size" not in keyList: | |||
| attr = getattr(self, "size") | |||
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Miguel Valdez
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r672 | ||
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Miguel Valdez
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r728 | if attr: | |
| message += "%s = %s" %("size", attr) + "\n" | |||
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Miguel Valdez
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r672 | print message | |
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Miguel Valdez
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r568 | ||
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Daniel Valdez
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r487 | class BasicHeader(Header): | |
| size = None | |||
| version = None | |||
| dataBlock = None | |||
| utc = None | |||
| ltc = None | |||
| miliSecond = None | |||
| timeZone = None | |||
| dstFlag = None | |||
| errorCount = None | |||
| datatime = None | |||
|
Jose Chavez
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r980 | structure = BASIC_STRUCTURE | |
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Daniel Valdez
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r487 | __LOCALTIME = None | |
| def __init__(self, useLocalTime=True): | |||
| self.size = 24 | |||
| self.version = 0 | |||
| self.dataBlock = 0 | |||
| self.utc = 0 | |||
| self.miliSecond = 0 | |||
| self.timeZone = 0 | |||
| self.dstFlag = 0 | |||
| self.errorCount = 0 | |||
| self.useLocalTime = useLocalTime | |||
| def read(self, fp): | |||
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Miguel Valdez
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r684 | ||
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José Chávez
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r975 | self.length = 0 | |
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Daniel Valdez
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r487 | try: | |
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José Chávez
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r963 | if hasattr(fp, 'read'): | |
| header = numpy.fromfile(fp, BASIC_STRUCTURE,1) | |||
| else: | |||
| header = numpy.fromstring(fp, BASIC_STRUCTURE,1) | |||
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Daniel Valdez
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r487 | except Exception, e: | |
| print "BasicHeader: " | |||
| print e | |||
| return 0 | |||
|
José Chávez
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r975 | ||
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Miguel Valdez
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r684 | self.size = int(header['nSize'][0]) | |
| self.version = int(header['nVersion'][0]) | |||
| self.dataBlock = int(header['nDataBlockId'][0]) | |||
| self.utc = int(header['nUtime'][0]) | |||
| self.miliSecond = int(header['nMilsec'][0]) | |||
| self.timeZone = int(header['nTimezone'][0]) | |||
| self.dstFlag = int(header['nDstflag'][0]) | |||
| self.errorCount = int(header['nErrorCount'][0]) | |||
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Miguel Valdez
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r803 | ||
| if self.size < 24: | |||
| return 0 | |||
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José Chávez
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r975 | ||
| self.length = header.nbytes | |||
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Daniel Valdez
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r487 | return 1 | |
| def write(self, fp): | |||
| headerTuple = (self.size,self.version,self.dataBlock,self.utc,self.miliSecond,self.timeZone,self.dstFlag,self.errorCount) | |||
| header = numpy.array(headerTuple, BASIC_STRUCTURE) | |||
| header.tofile(fp) | |||
| return 1 | |||
| def get_ltc(self): | |||
| return self.utc - self.timeZone*60 | |||
| def set_ltc(self, value): | |||
| self.utc = value + self.timeZone*60 | |||
| def get_datatime(self): | |||
| return datetime.datetime.utcfromtimestamp(self.ltc) | |||
| ltc = property(get_ltc, set_ltc) | |||
| datatime = property(get_datatime) | |||
| class SystemHeader(Header): | |||
| size = None | |||
| nSamples = None | |||
| nProfiles = None | |||
| nChannels = None | |||
| adcResolution = None | |||
| pciDioBusWidth = None | |||
|
Jose Chavez
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r980 | structure = SYSTEM_STRUCTURE | |
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Jose Chavez
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r981 | def __init__(self, nSamples=0, nProfiles=0, nChannels=0, adcResolution=14, pciDioBusWidth=0): | |
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Miguel Valdez
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r568 | ||
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Daniel Valdez
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r487 | self.size = 24 | |
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Miguel Valdez
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r568 | self.nSamples = nSamples | |
| self.nProfiles = nProfiles | |||
| self.nChannels = nChannels | |||
| self.adcResolution = adcResolution | |||
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Jose Chavez
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r981 | self.pciDioBusWidth = pciDioBusWidth | |
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Jose Chavez
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r980 | ||
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Daniel Valdez
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r487 | def read(self, fp): | |
|
José Chávez
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r975 | self.length = 0 | |
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Daniel Valdez
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r487 | try: | |
|
José Chávez
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r975 | startFp = fp.tell() | |
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Daniel Valdez
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r487 | except Exception, e: | |
|
José Chávez
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r975 | startFp = None | |
| pass | |||
| try: | |||
| if hasattr(fp, 'read'): | |||
| header = numpy.fromfile(fp, SYSTEM_STRUCTURE,1) | |||
| else: | |||
| header = numpy.fromstring(fp, SYSTEM_STRUCTURE,1) | |||
| except Exception, e: | |||
| print "System Header: " + str(e) | |||
|
Daniel Valdez
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r487 | return 0 | |
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Miguel Valdez
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r684 | self.size = header['nSize'][0] | |
| self.nSamples = header['nNumSamples'][0] | |||
| self.nProfiles = header['nNumProfiles'][0] | |||
| self.nChannels = header['nNumChannels'][0] | |||
| self.adcResolution = header['nADCResolution'][0] | |||
| self.pciDioBusWidth = header['nPCDIOBusWidth'][0] | |||
|
Miguel Valdez
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r624 | ||
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r975 | if startFp is not None: | |
| endFp = self.size + startFp | |||
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Miguel Valdez
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r624 | ||
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José Chávez
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r975 | if fp.tell() > endFp: | |
| sys.stderr.write("Warning %s: Size value read from System Header is lower than it has to be\n" %fp.name) | |||
| return 0 | |||
| if fp.tell() < endFp: | |||
| sys.stderr.write("Warning %s: Size value read from System Header size is greater than it has to be\n" %fp.name) | |||
| return 0 | |||
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Miguel Valdez
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r803 | ||
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José Chávez
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r975 | self.length = header.nbytes | |
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Daniel Valdez
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r487 | return 1 | |
| def write(self, fp): | |||
| headerTuple = (self.size,self.nSamples,self.nProfiles,self.nChannels,self.adcResolution,self.pciDioBusWidth) | |||
| header = numpy.array(headerTuple,SYSTEM_STRUCTURE) | |||
| header.tofile(fp) | |||
| return 1 | |||
| class RadarControllerHeader(Header): | |||
| expType = None | |||
| nTx = None | |||
| ipp = None | |||
| txA = None | |||
| txB = None | |||
| nWindows = None | |||
| numTaus = None | |||
| codeType = None | |||
| line6Function = None | |||
| line5Function = None | |||
| fClock = None | |||
| prePulseBefore = None | |||
|
Jose Chavez
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r981 | prePulseAfter = None | |
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Daniel Valdez
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r487 | rangeIpp = None | |
| rangeTxA = None | |||
| rangeTxB = None | |||
|
Jose Chavez
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r980 | structure = RADAR_STRUCTURE | |
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Miguel Valdez
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r616 | __size = None | |
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Daniel Valdez
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r487 | ||
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Miguel Valdez
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r568 | def __init__(self, expType=2, nTx=1, | |
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Jose Chavez
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r981 | ipp=None, txA=0, txB=0, | |
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Miguel Valdez
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r568 | nWindows=None, nHeights=None, firstHeight=None, deltaHeight=None, | |
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Miguel Valdez
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r616 | numTaus=0, line6Function=0, line5Function=0, fClock=None, | |
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Miguel Valdez
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r568 | prePulseBefore=0, prePulseAfter=0, | |
| codeType=0, nCode=0, nBaud=0, code=None, | |||
| flip1=0, flip2=0): | |||
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Miguel Valdez
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r728 | # self.size = 116 | |
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Miguel Valdez
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r568 | self.expType = expType | |
| self.nTx = nTx | |||
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Jose Chavez
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r981 | self.ipp = ipp | |
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Miguel Valdez
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r568 | self.txA = txA | |
| self.txB = txB | |||
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Jose Chavez
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r981 | self.rangeIpp = ipp | |
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Miguel Valdez
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r568 | self.rangeTxA = txA | |
| self.rangeTxB = txB | |||
| self.nWindows = nWindows | |||
| self.numTaus = numTaus | |||
| self.codeType = codeType | |||
| self.line6Function = line6Function | |||
| self.line5Function = line5Function | |||
| self.fClock = fClock | |||
| self.prePulseBefore = prePulseBefore | |||
|
Jose Chavez
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r981 | self.prePulseAfter = prePulseAfter | |
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Miguel Valdez
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r568 | ||
| self.nHeights = nHeights | |||
| self.firstHeight = firstHeight | |||
| self.deltaHeight = deltaHeight | |||
| self.samplesWin = nHeights | |||
| self.nCode = nCode | |||
| self.nBaud = nBaud | |||
| self.code = code | |||
| self.flip1 = flip1 | |||
| self.flip2 = flip2 | |||
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Daniel Valdez
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r487 | ||
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Miguel Valdez
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r584 | self.code_size = int(numpy.ceil(self.nBaud/32.))*self.nCode*4 | |
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Daniel Valdez
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r487 | # self.dynamic = numpy.array([],numpy.dtype('byte')) | |
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Miguel Valdez
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r616 | if self.fClock is None and self.deltaHeight is not None: | |
| self.fClock = 0.15/(deltaHeight*1e-6) #0.15Km / (height * 1u) | |||
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Daniel Valdez
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r487 | ||
| def read(self, fp): | |||
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José Chávez
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r975 | self.length = 0 | |
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Miguel Valdez
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r684 | try: | |
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José Chávez
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r975 | startFp = fp.tell() | |
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Miguel Valdez
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r684 | except Exception, e: | |
|
José Chávez
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r975 | startFp = None | |
| pass | |||
| try: | |||
| if hasattr(fp, 'read'): | |||
| header = numpy.fromfile(fp, RADAR_STRUCTURE,1) | |||
| else: | |||
| header = numpy.fromstring(fp, RADAR_STRUCTURE,1) | |||
| self.length += header.nbytes | |||
| except Exception, e: | |||
| print "RadarControllerHeader: " + str(e) | |||
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Miguel Valdez
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r684 | return 0 | |
|
Miguel Valdez
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r624 | ||
| size = int(header['nSize'][0]) | |||
| self.expType = int(header['nExpType'][0]) | |||
| self.nTx = int(header['nNTx'][0]) | |||
| self.ipp = float(header['fIpp'][0]) | |||
| self.txA = float(header['fTxA'][0]) | |||
| self.txB = float(header['fTxB'][0]) | |||
| self.nWindows = int(header['nNumWindows'][0]) | |||
| self.numTaus = int(header['nNumTaus'][0]) | |||
| self.codeType = int(header['nCodeType'][0]) | |||
| self.line6Function = int(header['nLine6Function'][0]) | |||
| self.line5Function = int(header['nLine5Function'][0]) | |||
| self.fClock = float(header['fClock'][0]) | |||
| self.prePulseBefore = int(header['nPrePulseBefore'][0]) | |||
|
Jose Chavez
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r981 | self.prePulseAfter = int(header['nPrePulseAfter'][0]) | |
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Miguel Valdez
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r624 | self.rangeIpp = header['sRangeIPP'][0] | |
| self.rangeTxA = header['sRangeTxA'][0] | |||
| self.rangeTxB = header['sRangeTxB'][0] | |||
|
José Chávez
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r975 | try: | |
| if hasattr(fp, 'read'): | |||
| samplingWindow = numpy.fromfile(fp, SAMPLING_STRUCTURE, self.nWindows) | |||
| else: | |||
| samplingWindow = numpy.fromstring(fp[self.length:], SAMPLING_STRUCTURE, self.nWindows) | |||
| self.length += samplingWindow.nbytes | |||
| except Exception, e: | |||
| print "RadarControllerHeader: " + str(e) | |||
| return 0 | |||
|
Miguel Valdez
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r624 | self.nHeights = int(numpy.sum(samplingWindow['nsa'])) | |
| self.firstHeight = samplingWindow['h0'] | |||
| self.deltaHeight = samplingWindow['dh'] | |||
| self.samplesWin = samplingWindow['nsa'] | |||
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José Chávez
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r975 | ||
| try: | |||
| if hasattr(fp, 'read'): | |||
| self.Taus = numpy.fromfile(fp, '<f4', self.numTaus) | |||
| else: | |||
| self.Taus = numpy.fromstring(fp[self.length:], '<f4', self.numTaus) | |||
| self.length += self.Taus.nbytes | |||
| except Exception, e: | |||
| print "RadarControllerHeader: " + str(e) | |||
| return 0 | |||
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Miguel Valdez
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r624 | ||
| self.code_size = 0 | |||
| if self.codeType != 0: | |||
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Daniel Valdez
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r487 | ||
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José Chávez
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r975 | try: | |
| if hasattr(fp, 'read'): | |||
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José Chávez
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r992 | self.nCode = numpy.fromfile(fp, '<u4', 1)[0] | |
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José Chávez
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r975 | self.length += self.nCode.nbytes | |
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José Chávez
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r992 | self.nBaud = numpy.fromfile(fp, '<u4', 1)[0] | |
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José Chávez
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r975 | self.length += self.nBaud.nbytes | |
| else: | |||
| self.nCode = numpy.fromstring(fp[self.length:], '<u4', 1)[0] | |||
| self.length += self.nCode.nbytes | |||
| self.nBaud = numpy.fromstring(fp[self.length:], '<u4', 1)[0] | |||
| self.length += self.nBaud.nbytes | |||
| except Exception, e: | |||
| print "RadarControllerHeader: " + str(e) | |||
|
José Chávez
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r992 | return 0 | |
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Miguel Valdez
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r624 | code = numpy.empty([self.nCode,self.nBaud],dtype='i1') | |
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José Chávez
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r975 | ||
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Miguel Valdez
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r624 | for ic in range(self.nCode): | |
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José Chávez
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r975 | try: | |
| if hasattr(fp, 'read'): | |||
| temp = numpy.fromfile(fp,'u4', int(numpy.ceil(self.nBaud/32.))) | |||
| else: | |||
| temp = numpy.fromstring(fp,'u4', int(numpy.ceil(self.nBaud/32.))) | |||
| self.length += temp.nbytes | |||
| except Exception, e: | |||
| print "RadarControllerHeader: " + str(e) | |||
| return 0 | |||
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Miguel Valdez
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r624 | for ib in range(self.nBaud-1,-1,-1): | |
| code[ic,ib] = temp[ib/32]%2 | |||
| temp[ib/32] = temp[ib/32]/2 | |||
| self.code = 2.0*code - 1.0 | |||
| self.code_size = int(numpy.ceil(self.nBaud/32.))*self.nCode*4 | |||
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Miguel Valdez
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r584 | ||
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Miguel Valdez
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r616 | # if self.line5Function == RCfunction.FLIP: | |
| # self.flip1 = numpy.fromfile(fp,'<u4',1) | |||
Alexander Valdez
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r725 | # | |
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Miguel Valdez
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r616 | # if self.line6Function == RCfunction.FLIP: | |
| # self.flip2 = numpy.fromfile(fp,'<u4',1) | |||
|
José Chávez
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r975 | if startFp is not None: | |
| endFp = size + startFp | |||
|
Miguel Valdez
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r728 | ||
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José Chávez
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r975 | if fp.tell() != endFp: | |
| # fp.seek(endFp) | |||
| print "%s: Radar Controller Header size is not consistent: from data [%d] != from header field [%d]" %(fp.name, fp.tell()-startFp, size) | |||
| # return 0 | |||
| if fp.tell() > endFp: | |||
| sys.stderr.write("Warning %s: Size value read from Radar Controller header is lower than it has to be\n" %fp.name) | |||
| # return 0 | |||
| if fp.tell() < endFp: | |||
| sys.stderr.write("Warning %s: Size value read from Radar Controller header is greater than it has to be\n" %fp.name) | |||
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Miguel Valdez
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r728 | ||
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José Chávez
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r975 | ||
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Daniel Valdez
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r487 | return 1 | |
| def write(self, fp): | |||
|
Miguel Valdez
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r616 | ||
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Daniel Valdez
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r487 | headerTuple = (self.size, | |
| self.expType, | |||
| self.nTx, | |||
| self.ipp, | |||
| self.txA, | |||
| self.txB, | |||
| self.nWindows, | |||
| self.numTaus, | |||
| self.codeType, | |||
| self.line6Function, | |||
| self.line5Function, | |||
| self.fClock, | |||
| self.prePulseBefore, | |||
|
Jose Chavez
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r981 | self.prePulseAfter, | |
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Daniel Valdez
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r487 | self.rangeIpp, | |
| self.rangeTxA, | |||
| self.rangeTxB) | |||
| header = numpy.array(headerTuple,RADAR_STRUCTURE) | |||
| header.tofile(fp) | |||
|
Miguel Valdez
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r568 | sampleWindowTuple = (self.firstHeight,self.deltaHeight,self.samplesWin) | |
| samplingWindow = numpy.array(sampleWindowTuple,SAMPLING_STRUCTURE) | |||
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Daniel Valdez
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r487 | samplingWindow.tofile(fp) | |
| if self.numTaus > 0: | |||
| self.Taus.tofile(fp) | |||
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Alexander Valdez
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r556 | if self.codeType !=0: | |
| nCode = numpy.array(self.nCode, '<u4') | |||
| nCode.tofile(fp) | |||
| nBaud = numpy.array(self.nBaud, '<u4') | |||
| nBaud.tofile(fp) | |||
| code1 = (self.code + 1.0)/2. | |||
|
Daniel Valdez
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r487 | ||
Juan C. Espinoza
|
r1112 | for ic in range(self.nCode): | |
| tempx = numpy.zeros(int(numpy.ceil(self.nBaud/32.))) | |||
|
Alexander Valdez
|
r556 | start = 0 | |
| end = 32 | |||
| for i in range(len(tempx)): | |||
| code_selected = code1[ic,start:end] | |||
| for j in range(len(code_selected)-1,-1,-1): | |||
| if code_selected[j] == 1: | |||
| tempx[i] = tempx[i] + 2**(len(code_selected)-1-j) | |||
| start = start + 32 | |||
| end = end + 32 | |||
| tempx = tempx.astype('u4') | |||
| tempx.tofile(fp) | |||
|
Daniel Valdez
|
r487 | ||
|
Miguel Valdez
|
r616 | # if self.line5Function == RCfunction.FLIP: | |
| # self.flip1.tofile(fp) | |||
| # | |||
| # if self.line6Function == RCfunction.FLIP: | |||
| # self.flip2.tofile(fp) | |||
|
Daniel Valdez
|
r487 | ||
| return 1 | |||
| def get_ippSeconds(self): | |||
| ''' | |||
| ''' | |||
|
Miguel Valdez
|
r616 | ippSeconds = 2.0 * 1000 * self.ipp / SPEED_OF_LIGHT | |
|
Daniel Valdez
|
r487 | ||
| return ippSeconds | |||
| def set_ippSeconds(self, ippSeconds): | |||
| ''' | |||
| ''' | |||
|
Miguel Valdez
|
r616 | self.ipp = ippSeconds * SPEED_OF_LIGHT / (2.0*1000) | |
| return | |||
| def get_size(self): | |||
| self.__size = 116 + 12*self.nWindows + 4*self.numTaus | |||
| if self.codeType != 0: | |||
| self.__size += 4 + 4 + 4*self.nCode*numpy.ceil(self.nBaud/32.) | |||
| return self.__size | |||
| def set_size(self, value): | |||
|
Miguel Valdez
|
r728 | raise IOError, "size is a property and it cannot be set, just read" | |
|
Daniel Valdez
|
r487 | ||
| return | |||
| ippSeconds = property(get_ippSeconds, set_ippSeconds) | |||
|
Miguel Valdez
|
r616 | size = property(get_size, set_size) | |
|
Daniel Valdez
|
r487 | ||
| class ProcessingHeader(Header): | |||
|
Miguel Valdez
|
r624 | # size = None | |
|
Daniel Valdez
|
r487 | dtype = None | |
| blockSize = None | |||
| profilesPerBlock = None | |||
| dataBlocksPerFile = None | |||
| nWindows = None | |||
| processFlags = None | |||
| nCohInt = None | |||
| nIncohInt = None | |||
| totalSpectra = None | |||
|
Jose Chavez
|
r980 | structure = PROCESSING_STRUCTURE | |
|
Daniel Valdez
|
r487 | flag_dc = None | |
| flag_cspc = None | |||
|
Jose Chavez
|
r980 | def __init__(self, dtype=0, blockSize=0, profilesPerBlock=0, dataBlocksPerFile=0, nWindows=0,processFlags=0, nCohInt=0, | |
| nIncohInt=0, totalSpectra=0, nHeights=0, firstHeight=0, deltaHeight=0, samplesWin=0, spectraComb=0, nCode=0, | |||
| code=0, nBaud=None, shif_fft=False, flag_dc=False, flag_cspc=False, flag_decode=False, flag_deflip=False | |||
| ): | |||
|
Miguel Valdez
|
r568 | ||
|
Miguel Valdez
|
r624 | # self.size = 0 | |
|
Jose Chavez
|
r980 | self.dtype = dtype | |
| self.blockSize = blockSize | |||
|
Daniel Valdez
|
r487 | self.profilesPerBlock = 0 | |
| self.dataBlocksPerFile = 0 | |||
| self.nWindows = 0 | |||
| self.processFlags = 0 | |||
| self.nCohInt = 0 | |||
| self.nIncohInt = 0 | |||
| self.totalSpectra = 0 | |||
| self.nHeights = 0 | |||
| self.firstHeight = 0 | |||
| self.deltaHeight = 0 | |||
| self.samplesWin = 0 | |||
| self.spectraComb = 0 | |||
|
Miguel Valdez
|
r624 | self.nCode = None | |
| self.code = None | |||
| self.nBaud = None | |||
|
Daniel Valdez
|
r487 | self.shif_fft = False | |
| self.flag_dc = False | |||
| self.flag_cspc = False | |||
|
Miguel Valdez
|
r624 | self.flag_decode = False | |
| self.flag_deflip = False | |||
|
José Chávez
|
r975 | self.length = 0 | |
|
Jose Chavez
|
r980 | ||
|
Daniel Valdez
|
r487 | def read(self, fp): | |
|
José Chávez
|
r975 | self.length = 0 | |
| try: | |||
| startFp = fp.tell() | |||
| except Exception, e: | |||
| startFp = None | |||
| pass | |||
|
Miguel Valdez
|
r624 | ||
|
Miguel Valdez
|
r684 | try: | |
|
José Chávez
|
r975 | if hasattr(fp, 'read'): | |
| header = numpy.fromfile(fp, PROCESSING_STRUCTURE, 1) | |||
| else: | |||
| header = numpy.fromstring(fp, PROCESSING_STRUCTURE, 1) | |||
| self.length += header.nbytes | |||
|
Miguel Valdez
|
r684 | except Exception, e: | |
|
José Chávez
|
r975 | print "ProcessingHeader: " + str(e) | |
|
Miguel Valdez
|
r684 | return 0 | |
|
Miguel Valdez
|
r624 | ||
| size = int(header['nSize'][0]) | |||
|
Daniel Valdez
|
r487 | self.dtype = int(header['nDataType'][0]) | |
| self.blockSize = int(header['nSizeOfDataBlock'][0]) | |||
| self.profilesPerBlock = int(header['nProfilesperBlock'][0]) | |||
| self.dataBlocksPerFile = int(header['nDataBlocksperFile'][0]) | |||
| self.nWindows = int(header['nNumWindows'][0]) | |||
| self.processFlags = header['nProcessFlags'] | |||
| self.nCohInt = int(header['nCoherentIntegrations'][0]) | |||
| self.nIncohInt = int(header['nIncoherentIntegrations'][0]) | |||
| self.totalSpectra = int(header['nTotalSpectra'][0]) | |||
|
José Chávez
|
r975 | try: | |
| if hasattr(fp, 'read'): | |||
| samplingWindow = numpy.fromfile(fp, SAMPLING_STRUCTURE, self.nWindows) | |||
| else: | |||
| samplingWindow = numpy.fromstring(fp[self.length:], SAMPLING_STRUCTURE, self.nWindows) | |||
| self.length += samplingWindow.nbytes | |||
| except Exception, e: | |||
| print "ProcessingHeader: " + str(e) | |||
| return 0 | |||
|
Daniel Valdez
|
r487 | ||
|
Miguel Valdez
|
r568 | self.nHeights = int(numpy.sum(samplingWindow['nsa'])) | |
| self.firstHeight = float(samplingWindow['h0'][0]) | |||
| self.deltaHeight = float(samplingWindow['dh'][0]) | |||
| self.samplesWin = samplingWindow['nsa'][0] | |||
|
Miguel Valdez
|
r624 | ||
|
José Chávez
|
r975 | ||
| try: | |||
| if hasattr(fp, 'read'): | |||
| self.spectraComb = numpy.fromfile(fp, 'u1', 2*self.totalSpectra) | |||
| else: | |||
| self.spectraComb = numpy.fromstring(fp[self.length:], 'u1', 2*self.totalSpectra) | |||
| self.length += self.spectraComb.nbytes | |||
| except Exception, e: | |||
| print "ProcessingHeader: " + str(e) | |||
| return 0 | |||
|
Daniel Valdez
|
r487 | ||
|
Miguel Valdez
|
r624 | if ((self.processFlags & PROCFLAG.DEFINE_PROCESS_CODE) == PROCFLAG.DEFINE_PROCESS_CODE): | |
| self.nCode = int(numpy.fromfile(fp,'<u4',1)) | |||
| self.nBaud = int(numpy.fromfile(fp,'<u4',1)) | |||
| self.code = numpy.fromfile(fp,'<f4',self.nCode*self.nBaud).reshape(self.nCode,self.nBaud) | |||
|
Daniel Valdez
|
r487 | ||
|
Miguel Valdez
|
r624 | if ((self.processFlags & PROCFLAG.EXP_NAME_ESP) == PROCFLAG.EXP_NAME_ESP): | |
| exp_name_len = int(numpy.fromfile(fp,'<u4',1)) | |||
| exp_name = numpy.fromfile(fp,'u1',exp_name_len+1) | |||
|
Daniel Valdez
|
r487 | if ((self.processFlags & PROCFLAG.SHIFT_FFT_DATA) == PROCFLAG.SHIFT_FFT_DATA): | |
| self.shif_fft = True | |||
| else: | |||
| self.shif_fft = False | |||
|
Miguel Valdez
|
r624 | ||
|
Daniel Valdez
|
r487 | if ((self.processFlags & PROCFLAG.SAVE_CHANNELS_DC) == PROCFLAG.SAVE_CHANNELS_DC): | |
| self.flag_dc = True | |||
|
Miguel Valdez
|
r624 | else: | |
| self.flag_dc = False | |||
| if ((self.processFlags & PROCFLAG.DECODE_DATA) == PROCFLAG.DECODE_DATA): | |||
| self.flag_decode = True | |||
| else: | |||
| self.flag_decode = False | |||
|
Daniel Valdez
|
r487 | ||
|
Miguel Valdez
|
r624 | if ((self.processFlags & PROCFLAG.DEFLIP_DATA) == PROCFLAG.DEFLIP_DATA): | |
| self.flag_deflip = True | |||
| else: | |||
| self.flag_deflip = False | |||
|
Daniel Valdez
|
r487 | nChannels = 0 | |
| nPairs = 0 | |||
| pairList = [] | |||
| for i in range( 0, self.totalSpectra*2, 2 ): | |||
| if self.spectraComb[i] == self.spectraComb[i+1]: | |||
| nChannels = nChannels + 1 #par de canales iguales | |||
| else: | |||
| nPairs = nPairs + 1 #par de canales diferentes | |||
| pairList.append( (self.spectraComb[i], self.spectraComb[i+1]) ) | |||
| self.flag_cspc = False | |||
| if nPairs > 0: | |||
| self.flag_cspc = True | |||
|
Miguel Valdez
|
r624 | ||
|
José Chávez
|
r975 | ||
| if startFp is not None: | |||
| endFp = size + startFp | |||
| if fp.tell() > endFp: | |||
| sys.stderr.write("Warning: Processing header size is lower than it has to be") | |||
| return 0 | |||
| if fp.tell() < endFp: | |||
| sys.stderr.write("Warning: Processing header size is greater than it is considered") | |||
|
Daniel Valdez
|
r487 | ||
| return 1 | |||
| def write(self, fp): | |||
|
Miguel Valdez
|
r624 | #Clear DEFINE_PROCESS_CODE | |
Julio Valdez
|
r704 | self.processFlags = self.processFlags & (~PROCFLAG.DEFINE_PROCESS_CODE) | |
|
Miguel Valdez
|
r568 | ||
|
Daniel Valdez
|
r487 | headerTuple = (self.size, | |
| self.dtype, | |||
| self.blockSize, | |||
| self.profilesPerBlock, | |||
| self.dataBlocksPerFile, | |||
| self.nWindows, | |||
| self.processFlags, | |||
| self.nCohInt, | |||
| self.nIncohInt, | |||
| self.totalSpectra) | |||
| header = numpy.array(headerTuple,PROCESSING_STRUCTURE) | |||
| header.tofile(fp) | |||
| if self.nWindows != 0: | |||
| sampleWindowTuple = (self.firstHeight,self.deltaHeight,self.samplesWin) | |||
| samplingWindow = numpy.array(sampleWindowTuple,SAMPLING_STRUCTURE) | |||
| samplingWindow.tofile(fp) | |||
| if self.totalSpectra != 0: | |||
|
Miguel Valdez
|
r624 | # spectraComb = numpy.array([],numpy.dtype('u1')) | |
|
Daniel Valdez
|
r487 | spectraComb = self.spectraComb | |
| spectraComb.tofile(fp) | |||
|
Miguel Valdez
|
r778 | # if self.processFlags & PROCFLAG.DEFINE_PROCESS_CODE == PROCFLAG.DEFINE_PROCESS_CODE: | |
| # nCode = numpy.array([self.nCode], numpy.dtype('u4')) #Probar con un dato que almacene codigo, hasta el momento no se hizo la prueba | |||
| # nCode.tofile(fp) | |||
| # | |||
| # nBaud = numpy.array([self.nBaud], numpy.dtype('u4')) | |||
| # nBaud.tofile(fp) | |||
| # | |||
| # code = self.code.reshape(self.nCode*self.nBaud) | |||
| # code = code.astype(numpy.dtype('<f4')) | |||
| # code.tofile(fp) | |||
|
Daniel Valdez
|
r487 | ||
| return 1 | |||
|
Miguel Valdez
|
r624 | def get_size(self): | |
| self.__size = 40 + 12*self.nWindows + 2*self.totalSpectra | |||
|
Miguel Valdez
|
r778 | # if self.processFlags & PROCFLAG.DEFINE_PROCESS_CODE == PROCFLAG.DEFINE_PROCESS_CODE: | |
|
Miguel Valdez
|
r624 | # self.__size += 4 + 4 + 4*self.nCode*numpy.ceil(self.nBaud/32.) | |
|
Miguel Valdez
|
r778 | # self.__size += 4 + 4 + 4 * self.nCode * self.nBaud | |
|
Miguel Valdez
|
r624 | ||
| return self.__size | |||
| def set_size(self, value): | |||
|
Miguel Valdez
|
r728 | raise IOError, "size is a property and it cannot be set, just read" | |
|
Miguel Valdez
|
r624 | ||
| return | |||
| size = property(get_size, set_size) | |||
|
Daniel Valdez
|
r487 | class RCfunction: | |
| NONE=0 | |||
| FLIP=1 | |||
| CODE=2 | |||
| SAMPLING=3 | |||
| LIN6DIV256=4 | |||
| SYNCHRO=5 | |||
| class nCodeType: | |||
| NONE=0 | |||
| USERDEFINE=1 | |||
| BARKER2=2 | |||
| BARKER3=3 | |||
| BARKER4=4 | |||
| BARKER5=5 | |||
| BARKER7=6 | |||
| BARKER11=7 | |||
| BARKER13=8 | |||
| AC128=9 | |||
| COMPLEMENTARYCODE2=10 | |||
| COMPLEMENTARYCODE4=11 | |||
| COMPLEMENTARYCODE8=12 | |||
| COMPLEMENTARYCODE16=13 | |||
| COMPLEMENTARYCODE32=14 | |||
| COMPLEMENTARYCODE64=15 | |||
| COMPLEMENTARYCODE128=16 | |||
| CODE_BINARY28=17 | |||
| class PROCFLAG: | |||
|
Miguel Valdez
|
r616 | ||
|
Daniel Valdez
|
r487 | COHERENT_INTEGRATION = numpy.uint32(0x00000001) | |
| DECODE_DATA = numpy.uint32(0x00000002) | |||
| SPECTRA_CALC = numpy.uint32(0x00000004) | |||
| INCOHERENT_INTEGRATION = numpy.uint32(0x00000008) | |||
| POST_COHERENT_INTEGRATION = numpy.uint32(0x00000010) | |||
| SHIFT_FFT_DATA = numpy.uint32(0x00000020) | |||
| DATATYPE_CHAR = numpy.uint32(0x00000040) | |||
| DATATYPE_SHORT = numpy.uint32(0x00000080) | |||
| DATATYPE_LONG = numpy.uint32(0x00000100) | |||
| DATATYPE_INT64 = numpy.uint32(0x00000200) | |||
| DATATYPE_FLOAT = numpy.uint32(0x00000400) | |||
| DATATYPE_DOUBLE = numpy.uint32(0x00000800) | |||
| DATAARRANGE_CONTIGUOUS_CH = numpy.uint32(0x00001000) | |||
| DATAARRANGE_CONTIGUOUS_H = numpy.uint32(0x00002000) | |||
| DATAARRANGE_CONTIGUOUS_P = numpy.uint32(0x00004000) | |||
| SAVE_CHANNELS_DC = numpy.uint32(0x00008000) | |||
| DEFLIP_DATA = numpy.uint32(0x00010000) | |||
| DEFINE_PROCESS_CODE = numpy.uint32(0x00020000) | |||
| ACQ_SYS_NATALIA = numpy.uint32(0x00040000) | |||
| ACQ_SYS_ECHOTEK = numpy.uint32(0x00080000) | |||
| ACQ_SYS_ADRXD = numpy.uint32(0x000C0000) | |||
| ACQ_SYS_JULIA = numpy.uint32(0x00100000) | |||
| ACQ_SYS_XXXXXX = numpy.uint32(0x00140000) | |||
| EXP_NAME_ESP = numpy.uint32(0x00200000) | |||
| CHANNEL_NAMES_ESP = numpy.uint32(0x00400000) | |||
| OPERATION_MASK = numpy.uint32(0x0000003F) | |||
| DATATYPE_MASK = numpy.uint32(0x00000FC0) | |||
| DATAARRANGE_MASK = numpy.uint32(0x00007000) | |||
|
Miguel Valdez
|
r616 | ACQ_SYS_MASK = numpy.uint32(0x001C0000) | |
| dtype0 = numpy.dtype([('real','<i1'),('imag','<i1')]) | |||
| dtype1 = numpy.dtype([('real','<i2'),('imag','<i2')]) | |||
| dtype2 = numpy.dtype([('real','<i4'),('imag','<i4')]) | |||
| dtype3 = numpy.dtype([('real','<i8'),('imag','<i8')]) | |||
| dtype4 = numpy.dtype([('real','<f4'),('imag','<f4')]) | |||
| dtype5 = numpy.dtype([('real','<f8'),('imag','<f8')]) | |||
| NUMPY_DTYPE_LIST = [dtype0, dtype1, dtype2, dtype3, dtype4, dtype5] | |||
| PROCFLAG_DTYPE_LIST = [PROCFLAG.DATATYPE_CHAR, | |||
| PROCFLAG.DATATYPE_SHORT, | |||
| PROCFLAG.DATATYPE_LONG, | |||
| PROCFLAG.DATATYPE_INT64, | |||
| PROCFLAG.DATATYPE_FLOAT, | |||
| PROCFLAG.DATATYPE_DOUBLE] | |||
| DTYPE_WIDTH = [1, 2, 4, 8, 4, 8] | |||
| def get_dtype_index(numpy_dtype): | |||
| index = None | |||
| for i in range(len(NUMPY_DTYPE_LIST)): | |||
| if numpy_dtype == NUMPY_DTYPE_LIST[i]: | |||
| index = i | |||
| break | |||
| return index | |||
| def get_numpy_dtype(index): | |||
| return NUMPY_DTYPE_LIST[index] | |||
| def get_procflag_dtype(index): | |||
| return PROCFLAG_DTYPE_LIST[index] | |||
| def get_dtype_width(index): | |||
| return DTYPE_WIDTH[index] |