schain-jc Files · schainpy/model/serializer/test/DynamicYAML.py

Python 2to3, Spectra (all operations) working

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             DynamicYAML.py
        
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        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
      '''

      Module containing YAML Loader and Dumper for DynamicObjects

      as well as built-in data types (numpy, PrecisionTime, datetime, Binary, ...)

      $Id$

      '''

      import yaml

      import OrderedYAML

      import DynamicObject

      import binascii

      import numpy as np

      import PrecisionTime

      import Lookup

      import pysvn

      def load_defn(source, rev='head', repo=""):

          """ Import YAML definition(s) from given 'source' SVN location

          with specific revision number 'rev'. Returns a dict of the object

          names -> class object instances.

          NOTE: Object defns with same name & revision number will conflict /

          cause issues (regardless of svn location). """

          client = pysvn.Client()

          if rev == 'head':

              #yaml = client.cat(source)

              rev = client.info(repo).revision.number

          if source.startswith('http'):

              yaml = client.cat("%s?p=%d"%(source, rev))

          else:

              pysvn_rev = pysvn.Revision(pysvn.opt_revision_kind.number, rev)

              yaml = client.cat(source, pysvn_rev)

          revision_dict = {\

                    "__revision_number": rev,

                    "__revision_id": 'unknown',

                    "__revision_source": source,

                    "__revision_tag": 'unknown'}

          return DynamicObject.Factory(yaml=yaml, revision_dict=revision_dict).classes

      class Loader(OrderedYAML.Loader):

          def __init__(self, stream):

              OrderedYAML.Loader.__init__(self, stream)

          def construct_object(self, node, deep=False):

              """ Unresolved tags on mapping nodes come from un-imported YAML definitions - import it """

              resolved = node.tag in self.yaml_constructors

              resolved = resolved or any([node.tag.startswith(x) for x in self.yaml_multi_constructors])

              if isinstance(node, yaml.nodes.MappingNode) and not resolved:

                  data = self.construct_mapping(self, node)

                  self.constructed_objects[node] = data

                  del self.recursive_objects[node]

        George Yong
    
Python 2to3, Spectra (all operations) working

              r1167
            
                  if '__revision_source' in data:

        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
                      # TODO: Handle password authentication

                      client = pysvn.Client()

                      source = data['__revision_source']

                      if source.startswith('http'):

                          rev = data['__revision_number']

                          defn = client.cat("%s?p=%d"%(source, rev))

                      else:

                          rev = pysvn.Revision(pysvn.opt_revision_kind.number, data['__revision_number'])

                          defn = client.cat(source, revision=rev)

                      DynamicObject.Factory(yaml=defn) # Register the object

                      constructor = self.yaml_constructors["%s.%s"%(data['__revision_name'], data['__revision_number'])]

                      return constructor(node)

                  else:

                      raise Exception("Cannot load object with tag '%s' - cannot find YAML object definition (no __revision_source included)")

              else:

                  return yaml.Loader.construct_object(self, node, deep=deep)

      class Dumper(OrderedYAML.Dumper):

          def __init__(self, stream, *args, **kwargs):

              OrderedYAML.Dumper.__init__(self, stream, *args, **kwargs)

          def represent_dynamic_object(self, obj):

              """

              Override the !!python/object:__main__.xxx syntax with

              !ObjectName.zzz where zzz is the revision number of the Object obj

              """

              state = {}

        George Yong
    
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              r1167
            
              state.update(list(obj.__dict__.items()))

              state.update(list(obj.__class__.meta_attributes.items()))

        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
              name = obj.getObjectName() # obj.__class__.__name__

              revision = obj.getRevisionNumber()

        George Yong
    
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              r1167
            
              return self.represent_mapping('!%s.%s' % (name, revision), state)

        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
      # Dtypes to be stored as hex in YAML streams / strings

      hex_dtypes = ['float', 'complex', 'half', 'single', 'double']

      # Register hex constructors for the numpy / built-in dtypes:

      dtypes = Lookup.numpy_dtypes

      # Inverse lookup for accessing tags given a class instance:

        George Yong
    
Python 2to3, Spectra (all operations) working

              r1167
            
      cls_dtypes = dict([(v,k) for (k,v) in list(dtypes.items())])

        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
      # Representer for numpy arrays:

      def ndarray_representer(dumper, obj):

          #if isinstance(obj, np.ndarray):

          tag = 'dtype.'+obj.dtype.type.__name__

          hexlify = any([x in tag for x in hex_dtypes])

          np_ary = obj

          #hex_ary = np.empty(np_ary.shape, dtype=yaml.nodes.ScalarNode)

          np_flat, hex_flat = np_ary.flat, [] #hex_ary.flat

        George Yong
    
Python 2to3, Spectra (all operations) working

              r1167
            
          hex_flat.append(dumper.represent_sequence('tag:yaml.org,2002:seq', list(np_ary.shape), flow_style=True))

        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
          if hexlify:

              lst = []

              for i in range(len(np_flat)):

        George Yong
    
Python 2to3, Spectra (all operations) working

              r1167
            
                  value = '%s'%(np_flat[i],)

                  node = dumper.represent_scalar('tag:yaml.org,2002:str', value, style='')

        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
                  lst.append(node)

        George Yong
    
Python 2to3, Spectra (all operations) working

              r1167
            
              hex_flat.append(yaml.nodes.SequenceNode('tag:yaml.org,2002:seq', lst, flow_style=True))

        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
              lst = []

          for i in range(len(np_flat)):

        George Yong
    
Python 2to3, Spectra (all operations) working

              r1167
            
              if hexlify: value = '%s'%(binascii.hexlify(np_flat[i]),)

              else: value = '%s'%(np_flat[i],)

              node = dumper.represent_scalar('tag:yaml.org,2002:str', value, style='')

        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
              if hexlify: lst.append(node)

              else: hex_flat.append(node)

        George Yong
    
Python 2to3, Spectra (all operations) working

              r1167
            
          if hexlify: hex_flat.append(yaml.nodes.SequenceNode('tag:yaml.org,2002:seq', lst, flow_style=True))

          return yaml.nodes.SequenceNode('!%s'%(tag,), hex_flat, flow_style=True)

        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
      Dumper.add_representer(np.ndarray, ndarray_representer)

      # Constructor for ndarrays with arbitrary (specified) dtype:

      def ndarray_constructor(loader, node, dtype, hexlify=False):

          shape = loader.construct_sequence(node.value.pop(0))

          np_ary = np.empty(shape, dtype=dtype)

          np_flat = np_ary.flat # Flat iterator

          if hexlify:

              node.value[1].tag = node.tag

              node = node.value[1] # only look at hexlified values

          for i in range(len(node.value)):

              # Over-ride the 'tag:yaml.org,2002:str' tag with correct data type

              node.value[i].tag = node.tag

              value = loader.construct_object(node.value[i])

              #if hexlify:

              #    value = binascii.unhexlify(value)

              #    value = np.frombuffer(value, dtype=dtype)

              np_flat[i] = value

          return np_ary

      class __dtype_con:

          def __init__(self, tag):

              # Whether or not to convert to hex:

              hexlify = any([x in tag for x in hex_dtypes])

              dtype = dtypes[tag]

              # Mutable list containing constructor & representer info

              self.fncn_attributes = [tag, hexlify, dtype]

              def dtype_constructor(loader, node):

                  tag, hexlify, dtype = self.fncn_attributes

                  if isinstance(node, yaml.nodes.SequenceNode):

                      return ndarray_constructor(loader, node, dtype, hexlify=hexlify)

                  else: # isinstance(node, yaml.nodes.ScalarNode):

                      value = loader.construct_scalar(node)

                      dtype = dtypes[node.tag[1:]]

                      if hexlify:

                          value = binascii.unhexlify(value)

                          value = np.frombuffer(value, dtype=dtype)[0]

                      else:

                          value = dtype(value)

                      return value

              def dtype_representer(dumper, obj):

                  tag, hexlify, dtype = self.fncn_attributes

                  if isinstance(obj, float): obj = np.float64(obj)

        George Yong
    
Python 2to3, Spectra (all operations) working

              r1167
            
                  if hexlify: value = '%s'%(binascii.hexlify(obj),)

                  else: value = '%s'%(obj,)

                  try: tag = '!%s'%(cls_dtypes[obj.__class__]) # 'dtype.'+obj.__class__.__name__ # bullshit...

        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
                  except KeyError: tag = ''

                  node = dumper.represent_scalar(tag, value, style='')

                  return node

              self.dtype_constructor = dtype_constructor

              self.dtype_representer = dtype_representer

        George Yong
    
Python 2to3, Spectra (all operations) working

              r1167
            
      keys = [x for x in list(dtypes.keys()) if x != 'dtype.int' and x != 'dtype.bool']

      print(keys)

        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
      n = len(keys)

        George Yong
    
Python 2to3, Spectra (all operations) working

              r1167
            
      print(n)

        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
      i=0

      for tag in keys:

          dtype = __dtype_con(tag)

          dtype_constructor = dtype.dtype_constructor

          dtype_representer = dtype.dtype_representer

        George Yong
    
Python 2to3, Spectra (all operations) working

              r1167
            
          Loader.add_constructor('!%s'%(tag,), dtype_constructor)

        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
          Dumper.add_representer(dtypes[tag], dtype_representer)

      # Precision time constructors & representers:

      def ns_rep(dumper, obj):

          state = {'second': obj.__dict__['second'], 'nanosecond': obj.__dict__['nanosecond']}

        George Yong
    
Python 2to3, Spectra (all operations) working

              r1167
            
          return dumper.represent_mapping('!timestamp_ns', state)

        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
      def ps_rep(dumper, obj):

          state = {'second': obj.__dict__['second'], 'picosecond': obj.__dict__['picosecond']}

        George Yong
    
Python 2to3, Spectra (all operations) working

              r1167
            
          return dumper.represent_mapping('!timestamp_ps', state)

        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
      def ns_con(loader, node): return PrecisionTime.nsTime(**loader.construct_mapping(node))

      def ps_con(loader, node): return PrecisionTime.psTime(**loader.construct_mapping(node))

      Dumper.add_representer(PrecisionTime.nsTime, ns_rep)

      Dumper.add_representer(PrecisionTime.psTime, ps_rep)

        George Yong
    
Python 2to3, Spectra (all operations) working

              r1167
            
      Loader.add_constructor('!timestamp_ns', ns_con)

      Loader.add_constructor('!timestamp_nanosecond', ns_con)

      Loader.add_constructor('!timestamp_ps', ps_con)

      Loader.add_constructor('!timestamp_picosecond', ps_con)

        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
      # Binary object constructor & representer:

        George Yong
    
Python 2to3, Spectra (all operations) working

              r1167
            
      def bin_rep(dumper, obj): return dumper.represent_mapping('!binary', obj.__dict__)

        Miguel Valdez
    
Merge with branch schain_julia_drifts from rev. 803 to 995....

              r568
            
      def bin_con(loader, node): return DynamicObject.Binary(**loader.construct_mapping(node))

      Dumper.add_representer(DynamicObject.Binary, bin_rep)

        George Yong
    
Python 2to3, Spectra (all operations) working

              r1167
            
      Loader.add_constructor('!binary', bin_con)

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Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568	'''
		Module containing YAML Loader and Dumper for DynamicObjects
		as well as built-in data types (numpy, PrecisionTime, datetime, Binary, ...)

		$Id$
		'''

		import yaml
		import OrderedYAML
		import DynamicObject
		import binascii
		import numpy as np
		import PrecisionTime
		import Lookup
		import pysvn

		def load_defn(source, rev='head', repo=""):
		""" Import YAML definition(s) from given 'source' SVN location
		with specific revision number 'rev'. Returns a dict of the object
		names -> class object instances.

		NOTE: Object defns with same name & revision number will conflict /
		cause issues (regardless of svn location). """
		client = pysvn.Client()

		if rev == 'head':
		#yaml = client.cat(source)
		rev = client.info(repo).revision.number

		if source.startswith('http'):
		yaml = client.cat("%s?p=%d"%(source, rev))
		else:
		pysvn_rev = pysvn.Revision(pysvn.opt_revision_kind.number, rev)
		yaml = client.cat(source, pysvn_rev)

		revision_dict = {\
		"__revision_number": rev,
		"__revision_id": 'unknown',
		"__revision_source": source,
		"__revision_tag": 'unknown'}

		return DynamicObject.Factory(yaml=yaml, revision_dict=revision_dict).classes

		class Loader(OrderedYAML.Loader):

		def __init__(self, stream):
		OrderedYAML.Loader.__init__(self, stream)

		def construct_object(self, node, deep=False):
		""" Unresolved tags on mapping nodes come from un-imported YAML definitions - import it """
		resolved = node.tag in self.yaml_constructors
		resolved = resolved or any([node.tag.startswith(x) for x in self.yaml_multi_constructors])
		if isinstance(node, yaml.nodes.MappingNode) and not resolved:
		data = self.construct_mapping(self, node)
		self.constructed_objects[node] = data
		del self.recursive_objects[node]
George Yong Python 2to3, Spectra (all operations) working	r1167	if '__revision_source' in data:
Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568	# TODO: Handle password authentication
		client = pysvn.Client()
		source = data['__revision_source']
		if source.startswith('http'):
		rev = data['__revision_number']
		defn = client.cat("%s?p=%d"%(source, rev))
		else:
		rev = pysvn.Revision(pysvn.opt_revision_kind.number, data['__revision_number'])
		defn = client.cat(source, revision=rev)
		DynamicObject.Factory(yaml=defn) # Register the object

		constructor = self.yaml_constructors["%s.%s"%(data['__revision_name'], data['__revision_number'])]
		return constructor(node)
		else:
		raise Exception("Cannot load object with tag '%s' - cannot find YAML object definition (no __revision_source included)")
		else:
		return yaml.Loader.construct_object(self, node, deep=deep)

		class Dumper(OrderedYAML.Dumper):

		def __init__(self, stream, args, *kwargs):
		OrderedYAML.Dumper.__init__(self, stream, args, *kwargs)

		def represent_dynamic_object(self, obj):
		"""
		Override the !!python/object:__main__.xxx syntax with
		!ObjectName.zzz where zzz is the revision number of the Object obj
		"""

		state = {}
George Yong Python 2to3, Spectra (all operations) working	r1167	state.update(list(obj.__dict__.items()))
		state.update(list(obj.__class__.meta_attributes.items()))
Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568	name = obj.getObjectName() # obj.__class__.__name__
		revision = obj.getRevisionNumber()
George Yong Python 2to3, Spectra (all operations) working	r1167	return self.represent_mapping('!%s.%s' % (name, revision), state)
Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568
		# Dtypes to be stored as hex in YAML streams / strings
		hex_dtypes = ['float', 'complex', 'half', 'single', 'double']

		# Register hex constructors for the numpy / built-in dtypes:
		dtypes = Lookup.numpy_dtypes

		# Inverse lookup for accessing tags given a class instance:
George Yong Python 2to3, Spectra (all operations) working	r1167	cls_dtypes = dict([(v,k) for (k,v) in list(dtypes.items())])
Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568
		# Representer for numpy arrays:
		def ndarray_representer(dumper, obj):
		#if isinstance(obj, np.ndarray):
		tag = 'dtype.'+obj.dtype.type.__name__
		hexlify = any([x in tag for x in hex_dtypes])
		np_ary = obj
		#hex_ary = np.empty(np_ary.shape, dtype=yaml.nodes.ScalarNode)
		np_flat, hex_flat = np_ary.flat, [] #hex_ary.flat
George Yong Python 2to3, Spectra (all operations) working	r1167	hex_flat.append(dumper.represent_sequence('tag:yaml.org,2002:seq', list(np_ary.shape), flow_style=True))
Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568	if hexlify:
		lst = []
		for i in range(len(np_flat)):
George Yong Python 2to3, Spectra (all operations) working	r1167	value = '%s'%(np_flat[i],)
		node = dumper.represent_scalar('tag:yaml.org,2002:str', value, style='')
Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568	lst.append(node)
George Yong Python 2to3, Spectra (all operations) working	r1167	hex_flat.append(yaml.nodes.SequenceNode('tag:yaml.org,2002:seq', lst, flow_style=True))
Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568	lst = []
		for i in range(len(np_flat)):
George Yong Python 2to3, Spectra (all operations) working	r1167	if hexlify: value = '%s'%(binascii.hexlify(np_flat[i]),)
		else: value = '%s'%(np_flat[i],)
		node = dumper.represent_scalar('tag:yaml.org,2002:str', value, style='')
Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568	if hexlify: lst.append(node)
		else: hex_flat.append(node)
George Yong Python 2to3, Spectra (all operations) working	r1167	if hexlify: hex_flat.append(yaml.nodes.SequenceNode('tag:yaml.org,2002:seq', lst, flow_style=True))
		return yaml.nodes.SequenceNode('!%s'%(tag,), hex_flat, flow_style=True)
Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568	Dumper.add_representer(np.ndarray, ndarray_representer)

		# Constructor for ndarrays with arbitrary (specified) dtype:
		def ndarray_constructor(loader, node, dtype, hexlify=False):
		shape = loader.construct_sequence(node.value.pop(0))
		np_ary = np.empty(shape, dtype=dtype)
		np_flat = np_ary.flat # Flat iterator
		if hexlify:
		node.value[1].tag = node.tag
		node = node.value[1] # only look at hexlified values
		for i in range(len(node.value)):
		# Over-ride the 'tag:yaml.org,2002:str' tag with correct data type
		node.value[i].tag = node.tag
		value = loader.construct_object(node.value[i])
		#if hexlify:
		# value = binascii.unhexlify(value)
		# value = np.frombuffer(value, dtype=dtype)
		np_flat[i] = value
		return np_ary

		class __dtype_con:

		def __init__(self, tag):
		# Whether or not to convert to hex:
		hexlify = any([x in tag for x in hex_dtypes])
		dtype = dtypes[tag]

		# Mutable list containing constructor & representer info
		self.fncn_attributes = [tag, hexlify, dtype]

		def dtype_constructor(loader, node):
		tag, hexlify, dtype = self.fncn_attributes
		if isinstance(node, yaml.nodes.SequenceNode):
		return ndarray_constructor(loader, node, dtype, hexlify=hexlify)
		else: # isinstance(node, yaml.nodes.ScalarNode):
		value = loader.construct_scalar(node)
		dtype = dtypes[node.tag[1:]]
		if hexlify:
		value = binascii.unhexlify(value)
		value = np.frombuffer(value, dtype=dtype)[0]
		else:
		value = dtype(value)
		return value

		def dtype_representer(dumper, obj):
		tag, hexlify, dtype = self.fncn_attributes
		if isinstance(obj, float): obj = np.float64(obj)
George Yong Python 2to3, Spectra (all operations) working	r1167	if hexlify: value = '%s'%(binascii.hexlify(obj),)
		else: value = '%s'%(obj,)
		try: tag = '!%s'%(cls_dtypes[obj.__class__]) # 'dtype.'+obj.__class__.__name__ # bullshit...
Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568	except KeyError: tag = ''
		node = dumper.represent_scalar(tag, value, style='')
		return node

		self.dtype_constructor = dtype_constructor
		self.dtype_representer = dtype_representer

George Yong Python 2to3, Spectra (all operations) working	r1167	keys = [x for x in list(dtypes.keys()) if x != 'dtype.int' and x != 'dtype.bool']
		print(keys)
Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568
		n = len(keys)
George Yong Python 2to3, Spectra (all operations) working	r1167	print(n)
Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568	i=0

		for tag in keys:
		dtype = __dtype_con(tag)
		dtype_constructor = dtype.dtype_constructor
		dtype_representer = dtype.dtype_representer
George Yong Python 2to3, Spectra (all operations) working	r1167	Loader.add_constructor('!%s'%(tag,), dtype_constructor)
Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568	Dumper.add_representer(dtypes[tag], dtype_representer)

		# Precision time constructors & representers:
		def ns_rep(dumper, obj):
		state = {'second': obj.__dict__['second'], 'nanosecond': obj.__dict__['nanosecond']}
George Yong Python 2to3, Spectra (all operations) working	r1167	return dumper.represent_mapping('!timestamp_ns', state)
Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568	def ps_rep(dumper, obj):
		state = {'second': obj.__dict__['second'], 'picosecond': obj.__dict__['picosecond']}
George Yong Python 2to3, Spectra (all operations) working	r1167	return dumper.represent_mapping('!timestamp_ps', state)
Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568	def ns_con(loader, node): return PrecisionTime.nsTime(**loader.construct_mapping(node))
		def ps_con(loader, node): return PrecisionTime.psTime(**loader.construct_mapping(node))

		Dumper.add_representer(PrecisionTime.nsTime, ns_rep)
		Dumper.add_representer(PrecisionTime.psTime, ps_rep)
George Yong Python 2to3, Spectra (all operations) working	r1167	Loader.add_constructor('!timestamp_ns', ns_con)
		Loader.add_constructor('!timestamp_nanosecond', ns_con)
		Loader.add_constructor('!timestamp_ps', ps_con)
		Loader.add_constructor('!timestamp_picosecond', ps_con)
Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568
		# Binary object constructor & representer:
George Yong Python 2to3, Spectra (all operations) working	r1167	def bin_rep(dumper, obj): return dumper.represent_mapping('!binary', obj.__dict__)
Miguel Valdez Merge with branch schain_julia_drifts from rev. 803 to 995....	r568	def bin_con(loader, node): return DynamicObject.Binary(**loader.construct_mapping(node))
		Dumper.add_representer(DynamicObject.Binary, bin_rep)
George Yong Python 2to3, Spectra (all operations) working	r1167	Loader.add_constructor('!binary', bin_con)