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#!/bin/sh
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#
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# This script installs the entire Madrigal database.
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# Use -c to skip conversion from Madrigal 2->3 files
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#
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# See the latest documentation at http://madrigal.haystack.mit.edu/madrigal/admin.html
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# for the latest installation instructions
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#
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# $Id: installMadrigal 7342 2021-03-29 13:53:30Z brideout $
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function timer()
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{
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if [[ $# -eq 0 ]]; then
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echo $(date '+%s')
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else
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local stime=$1
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etime=$(date '+%s')
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if [[ -z "$stime" ]]; then stime=$etime; fi
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dt=$((etime - stime))
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ds=$((dt % 60))
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dm=$(((dt / 60) % 60))
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dh=$((dt / 3600))
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printf '%d:%02d:%02d' $dh $dm $ds
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fi
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}
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tmr=$(timer)
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# verify we are indeed in the right pwd
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if [ ! -f installMadrigal ]
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then
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echo "You must run this script from the MADROOT directory"
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exit -1
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fi
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# if MADROOT is set, be sure it matches PWD
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if [ "$MADROOT" != "" ]
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then
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if [ $MADROOT != $PWD ]
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then
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echo "Environmental variable MADROOT = $MADROOT does not match PWD = $PWD"
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exit -1
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fi
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else
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export MADROOT=$PWD
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fi
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# test that h5repack installed
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path_to_executable=$(which h5repack)
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if [ -x "$path_to_executable" ] ; then
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echo "h5repack installed"
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else
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echo "h5repack needs to be installed"
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exit -1
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fi
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# check whether test experiments have been installed
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if [[ (! -f experiments/1998/mlh/20jan98/mil980120g.002 ) && ( ! -f experiments/1998/mlh/20jan98/mil980120g.002.hdf5) && ( ! -f experiments/1998/mlh/20jan98/mlh980120g.002.hdf5) ]]
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then
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echo "The standard test data must be installed before installing Madrigal"
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echo "See install instructions at http://madrigal.haystack.mit.edu/madrigal/ad_install.html"
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echo "Standard test experiments can be found at http://madrigal.haystack.mit.edu/madrigal/madDownload.html"
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exit -1
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fi
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# check if should convert to Madrigal3
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convert=1
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if [ $# -gt 0 ]
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then
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for arg in $@
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do
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if [ $arg = "-c" ]
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then
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convert=0
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fi
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done
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fi
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echo "Testing that all required python modules are already installed in the default python 3"
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$MADROOT/bin/python testRequirements.py
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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echo "Installing Madrigal in $MADROOT"
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# verify correctness of madrigal.cfg
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if [ ! -f madrigal.cfg ]
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then
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echo
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echo "madrigal.cfg must be created first by copying madrigal.cfg.template and editing as needed"
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exit -1
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else
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$MADROOT/bin/python checkConfig.py
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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fi
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# Set all file permissions to owner and group write
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echo "********** setPermissions **********"
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$MADROOT/bin/python setPermissions.py
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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echo "********** configureSource **********"
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$MADROOT/bin/python configureSource.py
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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# Compile the Libraries and Programs
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# ----------------------------------
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cd source
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echo "********** rebuilding dist with autotools **********"
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aclocal
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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autoconf
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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libtoolize
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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autoheader
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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automake --add-missing
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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echo "********** ./configure **********"
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./configure --prefix=$MADROOT FFLAGS=-std=legacy
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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echo "********** make clean **********"
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make clean
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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echo "********** make **********"
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make
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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echo "********** make check **********"
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make check
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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echo "********** make install **********"
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make install
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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cd ..
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echo "********** configureScripts **********"
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$MADROOT/bin/python configureScripts.py
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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echo "********** Installing bootstrap calendar **********"
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cd source/madpy/djangoMad/bootstrap_calendar/dist
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rm -rf django-bootstrap-calendar-0.1.0
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tar -xzf django-bootstrap-calendar-0.1.0.tar.gz
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cd django-bootstrap-calendar-0.1.0
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$MADROOT/bin/python setup.py install
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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cd ../../../../../..
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echo "********** Installing madrigal python library **********"
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cd source/madpy
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rm -f -r build
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$MADROOT/bin/python setup.py install
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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rm -f -r build
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echo "********** Installing madrigalWeb python library **********"
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cd madrigalWeb
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rm -f -r build
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$MADROOT/bin/python setup.py install
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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cd ../../..
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echo "********** Verifying this site is set to at least 3 in siteTab.txt **********"
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$MADROOT/bin/python source/madpy/scripts/bin/checkSiteIs3.py
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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# Install Experiments
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# -------------------
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echo "********** configureExperiments **********"
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chmod +x configureExperiments
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./configureExperiments
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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# Update metadata
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# -------------------
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echo "********** Updating metadata tables **********"
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chmod +x -R bin/
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bin/updateMaster
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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echo "********** The following script will create all the summary and hdf5 files needed **********"
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bin/rebuildInstParmTab.py
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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if [ $convert = 1 ]
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then
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bin/convertToMadrigal3.py --numCPU=2
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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fi
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# Test the Libraries and Programs
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echo "********** Testing installation **********"
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# ------------------------------
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bin/testGeolib
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if [ $? -ne 0 ]
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then
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exit -1
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fi
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echo "--diff testGeolib.out source/madf/geolib/testGeolib.out.rock"
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diff testGeolib.out source/madf/geolib/testGeolib.out.rock
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echo "running test on Madrigal web services..."
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bin/python source/madpy/madrigalWeb/madrigalWeb/examples/testMadrigalWebServices.py
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echo "checking whether the web server needs extra configuration"
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bin/python source/madpy/scripts/bin/testWebConfig.py
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# Install complete
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# ---------------------
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echo ""
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printf 'Elapsed time: %s\n' $(timer $tmr)
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echo "Madrigal installation complete"
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