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DATABASES » madrigal
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Merge branch 'master' of http://10.10.110.76:3050/DATABASES/madrigal
jespinoza -
r5:47eb9060873d merge
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@@ -639,6 +639,11 class SingleExpPlotsForm(django.forms.Form):
639 required=False)
639 required=False)
640
640
641 '''get_params2 retrieves a list of 1d and 2d parameters of type 1 hdf5 files'''
641 '''get_params2 retrieves a list of 1d and 2d parameters of type 1 hdf5 files'''
642
643 def check_mnemonic(s):
644
645 return s.replace('+', '%2b')
646
642 def get_params1(args, kwargs, madExpObj, madWebObj):
647 def get_params1(args, kwargs, madExpObj, madWebObj):
643
648
644 expID = getSelection('experiment_list', args, kwargs)
649 expID = getSelection('experiment_list', args, kwargs)
@@ -649,47 +654,13 def get_params1(args, kwargs, madExpObj, madWebObj):
649 basename = firsttuple[0]
654 basename = firsttuple[0]
650 fullFilename = os.path.join(expDir, basename)
655 fullFilename = os.path.join(expDir, basename)
651 f = h5py.File(fullFilename, "r")
656 f = h5py.File(fullFilename, "r")
652 data = f[list(f.keys())[0]]
657
653 array = data[list(data.keys())[0]]
658 data = f['Data']
654
659
655 param1d = array[list(array.keys())[0]]
660 choices1d = [(check_mnemonic(x[0].decode().lower()), x[1].decode()) for x in data['Array Layout']['1D Parameters']['Data Parameters']]
656 param2d = array[list(array.keys())[1]]
661 choices2d = [(check_mnemonic(x[0].decode().lower()), x[1].decode()) for x in data['Array Layout']['2D Parameters']['Data Parameters']]
657 paramch1d = list(param1d.keys())
662 choices = [[('0', 'Select Parameter')] + choices1d, [('0', 'Select Parameter')] + choices2d]
658 paramch2d = list(param2d.keys())
663 f.close()
659
660 dataparameters = param1d[list(param1d.keys())[0]]
661 paramch_mn_bin = list(dataparameters['mnemonic'])
662 paramch_bin = list(dataparameters['description'])
663 paramch_mn = list()
664 paramch = list()
665
666 for i in range(len(paramch_bin)):
667 paramch_mn.append(paramch_mn_bin[i].decode("utf-8"))
668 paramch.append(paramch_bin[i].decode("utf-8"))
669
670 choices1d = ['Select parameter']
671 for ch in paramch1d[1:]:
672 aux = paramch[paramch_mn.index(ch.upper())]
673 choices1d.append(aux)
674
675
676 dataparameters = param2d[list(param2d.keys())[0]]
677 paramch_mn_bin = list(dataparameters['mnemonic'])
678 paramch_mn = list()
679 paramch_bin = list(dataparameters['description'])
680 paramch = list()
681
682 for i in range(len(paramch_bin)):
683 paramch_mn.append(paramch_mn_bin[i].decode("utf-8"))
684 paramch.append(paramch_bin[i].decode("utf-8"))
685
686 choices2d = ['Select parameter']
687 for ch in paramch2d[1:]:
688 aux = paramch[paramch_mn.index(ch.upper())]
689 choices2d.append(aux)
690
691
692 choices = [choices1d,choices2d]
693 return choices
664 return choices
694
665
695
666
@@ -704,21 +675,9 def get_params2(args, kwargs, madExpObj, madWebObj):
704 basename = firsttuple[0]
675 basename = firsttuple[0]
705 fullFilename = os.path.join(expDir, basename)
676 fullFilename = os.path.join(expDir, basename)
706 f = h5py.File(fullFilename, "r")
677 f = h5py.File(fullFilename, "r")
707
678 parameters = [(x[0].decode().lower(), x[1].decode()) for x in f['Metadata']['Data Parameters']]
708 metadata = f[list(f.keys())[1]]
679 f.close()
709 table = metadata[list(metadata.keys())[0]]
680 return [('0', 'Select Parameter')] + parameters
710 param_mn_bin = list(table['mnemonic'])
711 param_mn = list()
712 for p in param_mn_bin:
713 param_mn.append(p.decode("utf"))
714
715 index = param_mn.index('UT2_UNIX')
716 params = list(table['description'])
717 choices = ['Select parameter']
718 for p in params[index+1:]:
719 choices.append(p.decode("utf-8"))
720
721 return choices
722
681
723
682
724 class SingleExpPlotsSelectionForm(django.forms.Form):
683 class SingleExpPlotsSelectionForm(django.forms.Form):
@@ -750,28 +709,14 class SingleExpPlotsSelectionForm(django.forms.Form):
750 choices = get_params1(args, kwargs, madExpObj, madWebObj)
709 choices = get_params1(args, kwargs, madExpObj, madWebObj)
751 params1d = choices[0]
710 params1d = choices[0]
752 params2d = choices[1]
711 params2d = choices[1]
753
712 self.fields['param_list1d'] = django.forms.ChoiceField(widget = django.forms.Select(), choices=params1d, label="1D Parameters", required=False)
754 index = list(range(len(params1d)))
713 self.fields['param_list2d'] = django.forms.ChoiceField(widget = django.forms.Select(), choices=params2d, label="2D Parameters", required=False)
755 paramchoices1d = list(zip(index, params1d))
756
757
758 index = list(range(len(params2d)))
759 paramchoices2d = list(zip(index, params2d))
760
761
762 self.fields['param_list2d'] = django.forms.ChoiceField(widget = django.forms.Select(), choices=paramchoices2d, label="2D Parameters", required=False)
763
714
764 else:
715 else:
765 params1d = get_params2(args, kwargs, madExpObj, madWebObj)
716 params1d = get_params2(args, kwargs, madExpObj, madWebObj)
766 #if params1d[0] == 'ut2_unix':
717 self.fields['param_list1d'] = django.forms.ChoiceField(widget = django.forms.Select(), choices=params1d, label="1D Parameters", required=False)
767 # params1d[0] = 'Select parameter'
768 index = list(range(len(params1d)))
769 paramchoices1d = list(zip(index, params1d))
770
771 self.fields['param_list1d'] = django.forms.ChoiceField(widget = django.forms.Select(), choices=paramchoices1d, label="1D Parameters", required=False)
772
718
773
719
774
775 class SingleExpDownloadAsIsForm(django.forms.Form):
720 class SingleExpDownloadAsIsForm(django.forms.Form):
776 """SingleExpDownloadAsIsForm is a Form class for the download as is field in the Single Experiment interface.
721 """SingleExpDownloadAsIsForm is a Form class for the download as is field in the Single Experiment interface.
777 Use this because its faster to create than the full SingleExpDefaultForm
722 Use this because its faster to create than the full SingleExpDefaultForm
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@@ -11,6 +11,7
11 {% block title %}Show Madrigal experiment{% endblock %}
11 {% block title %}Show Madrigal experiment{% endblock %}
12
12
13 {% block extra_head %}
13 {% block extra_head %}
14 <script src="https://cdn.plot.ly/plotly-latest.min.js"></script>
14 <script>
15 <script>
15
16
16 function changeFile (select) {
17 function changeFile (select) {
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@@ -363,8 +363,8 def show_plots(request):
363
363
364 def view_plot(request):
364 def view_plot(request):
365
365
366 param1d = int(request.GET.get('param1d','0'))
366 param1d = request.GET.get('param1d', 0)
367 param2d = int(request.GET.get('param2d','0'))
367 param2d = request.GET.get('param2d', 0)
368
368
369 madDB = madrigal.metadata.MadrigalDB()
369 madDB = madrigal.metadata.MadrigalDB()
370 madWebObj = madrigal.ui.web.MadrigalWeb(madDB)
370 madWebObj = madrigal.ui.web.MadrigalWeb(madDB)
@@ -384,40 +384,22 def view_plot(request):
384
384
385 # Get the data
385 # Get the data
386
386
387 data = f[list(f.keys())[0]]
387 data = f['Data']
388
388
389 if 'Array Layout' in list(data.keys()):
389 if 'Array Layout' in data:
390 array = data[list(data.keys())[0]]
390 array = data['Array Layout']
391 timestamps = array[list(array.keys())[4]]
391 datatime = [datetime.datetime.fromtimestamp(t) for t in array['timestamps']]
392 datatime = [datetime.datetime.fromtimestamp(t) for t in list(timestamps)]
392 yrange = array['gdalt']
393
394 range = array[list(array.keys())[3]]
395 datarange = list(range)
396
397
393
398 if param1d==0:
394 if param1d==0:
399 parameters_2d = array[list(array.keys())[1]]
395 plot = plot_heatmap(datatime, yrange, array['2D Parameters'][param2d], param2d)
400 paramname = list(parameters_2d.keys())[param2d]
401 param = parameters_2d[list(parameters_2d.keys())[param2d]]
402 dataparam = list(param)
403 plot = plot_heatmap(datatime,datarange,dataparam,paramname)
404
405 else:
396 else:
406 parameters_1d = array[list(array.keys())[0]]
397 plot = plot_scatter(datatime, array['1D Parameters'][param1d], param1d)
407 paramname = list(parameters_1d.keys())[param1d]
408 param = parameters_1d[list(parameters_1d.keys())[param1d]]
409 dataparam = list(param)
410 plot = plot_scatter(datatime,dataparam,paramname)
411
398
412 else:
399 else:
413 table = data[list(data.keys())[0]]
400 table = data['Table Layout']
414 a = list(table.dtype.fields.keys())
401 datatime = [datetime.datetime.fromtimestamp(t) for t in table['ut2_unix']]
415 index = a.index('ut2_unix')
402 plot = plot_scatter(datatime,table[param1d],param1d)
416 v = a[index:]
417 paramname = v[param1d]
418 dataparam = list(table[paramname])
419 datatime = [datetime.datetime.fromtimestamp(t) for t in list(table['ut2_unix'])]
420 plot = plot_scatter(datatime,dataparam,paramname)
421
403
422 return HttpResponse(plot)
404 return HttpResponse(plot)
423
405
@@ -468,7 +450,7 def plot_scatter(datatime,dataparam,paramname):
468
450
469
451
470 def plot_heatmap(datatime,datarange,dataparam,paramname):
452 def plot_heatmap(datatime,datarange,dataparam,paramname):
471 if (numpy.isnan(dataparam).all()):
453 if (numpy.all(numpy.isnan(dataparam))):
472 plot = "There is no valid data available for this plot"
454 plot = "There is no valid data available for this plot"
473 else:
455 else:
474 fig = go.Figure()
456 fig = go.Figure()
@@ -506,7 +488,7 def plot_heatmap(datatime,datarange,dataparam,paramname):
506 ]),
488 ]),
507 type = "dropdown",
489 type = "dropdown",
508 direction="down",
490 direction="down",
509 pad={"r": 10, "t": 10},
491 pad={"r": 10, "t": -10},
510 showactive=True,
492 showactive=True,
511 x=0.1,
493 x=0.1,
512 xanchor="left",
494 xanchor="left",
@@ -527,21 +509,22 def plot_heatmap(datatime,datarange,dataparam,paramname):
527 ),
509 ),
528 ]),
510 ]),
529 direction="down",
511 direction="down",
530 pad={"r": 10, "t": 10},
512 pad={"r": 10, "t": -10},
531 showactive=True,
513 showactive=True,
532 x=0.32,
514 x=0.32,
533 xanchor="left",
515 xanchor="left",
534 y=1.05,
516 y=1.05,
535 yanchor="top"
517 yanchor="top"
536 ),
518 ),
519
537 ]
520 ]
538 )
521 )
539
522
540 fig.update_layout(
523 fig.update_layout(
541 annotations=[
524 annotations=[
542 dict(text="Colorscale", showarrow=False,
525 dict(text="Colorscale", showarrow=False,
543 x=0, xref="paper", y=1.03, yref="paper", align="left"),
526 x=0, xref="paper", y=1.05, yref="paper", align="left"),
544 dict(text="Lines", x=0.25, xref="paper", y=1.03, yref="paper",
527 dict(text="Lines", x=0.25, xref="paper", y=1.05, yref="paper",
545 showarrow=False)
528 showarrow=False)
546 ]
529 ]
547 )
530 )
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